RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12101
(105 letters)
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA,
protein-DNA complex, transcription factor, BZIP, C/EBP;
1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A
1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B
1nwq_A
Length = 78
Score = 51.4 bits (123), Expect = 2e-10
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56
AV++SR K++++ ET +V +L EN+ L++K++ LSRELS L+NLF
Sbjct: 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 51.1 bits (122), Expect = 4e-10
Identities = 23/49 (46%), Positives = 37/49 (75%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++++ ET +V +L EN+ L++K++ LSRELS L+NLF
Sbjct: 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 45.9 bits (109), Expect = 2e-08
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58
A + R + R T ++L+ E L+ +I L +E L+ + AH
Sbjct: 12 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex,
transcription/DNA complex; 2.20A {Homo sapiens} SCOP:
h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 44.3 bits (105), Expect = 1e-07
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58
A +SR + + E+V LK +N L +L +++ LK + H
Sbjct: 12 AASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH 62
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 42.0 bits (99), Expect = 8e-07
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54
A R R K R + + +L+ +N+ L+E+ L++E+ +LK+L
Sbjct: 13 AATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo
sapiens} SCOP: h.1.3.1
Length = 61
Score = 40.0 bits (94), Expect = 4e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57
A RSR K ++ Q ++ L + N L+ ++ +L E++ LK L LA
Sbjct: 11 AAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.006
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 29/86 (33%)
Query: 34 NDMLEEKIKILSREL-----SFLKNLFLAHAG-----STNGIDMDD-----IDLESLLAD 78
+D EE L R+L + +L A +D + +++ L +
Sbjct: 167 DDYFEE----L-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 79 AVDTPPSVPCTSSRSNY-NSSSLSTP 103
+TP +Y S +S P
Sbjct: 222 PSNTPD--------KDYLLSIPISCP 239
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA
complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Length = 55
Score = 29.3 bits (66), Expect = 0.052
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELS 49
+A + SR K + + RV L+ +N L E++K L S
Sbjct: 11 EAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 30.0 bits (67), Expect = 0.056
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53
RVK + +E ++ +L+ E + L + + EL L++
Sbjct: 47 GYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93
>2wt7_B Transcription factor MAFB; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 29.6 bits (66), Expect = 0.069
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53
+ R K + +L + + L++++ L+RE K
Sbjct: 37 GYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 27.5 bits (61), Expect = 0.23
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELS 49
A +RSR + + ++ ++V +L ++N LE ++ L + +
Sbjct: 20 AARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.8 bits (62), Expect = 0.67
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 2 AEPYLQAVKRSRVKSRI--KTQETMERVNKLKTENDMLEEKIKILSREL 48
A YLQ R + R K + V + K + LE KI L R++
Sbjct: 889 AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl
protease, glycoprotein, hydrolase, membrane,
transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo
sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A*
2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A*
3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A
2zhs_A 2zhr_A 2zhu_A ...
Length = 395
Score = 26.4 bits (58), Expect = 1.8
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 84 PSVPCTSSRSNYNSSSLST 102
+ P Y ST
Sbjct: 50 GAAPHPFLHRYYQRQLSST 68
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET:
TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A*
3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A*
2va7_A* 2va5_A* 2va6_A*
Length = 455
Score = 26.5 bits (58), Expect = 2.2
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 84 PSVPCTSSRSNYNSSSLST 102
+ P Y ST
Sbjct: 103 GAAPHPFLHRYYQRQLSST 121
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.3 bits (58), Expect = 2.3
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 6 LQAVKRSRVKSRIKTQETM----ERVNKLKTENDMLEEKIKILSRELS 49
LQ K + K ++ + ++ NKL E +LEE++ L+ L+
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Score = 24.8 bits (54), Expect = 7.2
Identities = 7/47 (14%), Positives = 22/47 (46%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53
Q +++ + K ++ + E++ +L+ + L+ ++ EL
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO;
3.10A {Homo sapiens}
Length = 383
Score = 26.3 bits (58), Expect = 2.3
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 84 PSVPCTSSRSNYNSSSLST 102
P + + +++ ST
Sbjct: 42 AGTPHSYIDTYFDTERSST 60
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 2.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 59 AGSTNGIDMDDIDLESLLA 77
A GI+++ ID +S A
Sbjct: 574 AIPEQGIELEHIDSKSEFA 592
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 25.8 bits (57), Expect = 3.0
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54
KS ++ + + N K + K EL + ++
Sbjct: 64 KSLLEKKRDFTKSNNDKISIKSKYDDFK---NELQIITDI 100
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 24.9 bits (55), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 37 LEEKIKILSRELSFLKNLF 55
LE K++ L E++FLK L
Sbjct: 88 LERKVESLQEEIAFLKKLH 106
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 24.1 bits (53), Expect = 5.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 37 LEEKIKILSRELSFLKNL 54
LE K++ L E++FLK L
Sbjct: 68 LERKVESLQEEIAFLKKL 85
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 25.3 bits (55), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 50 FLKNLFLAHAGSTNGIDMDDIDL 72
LKNL L+ + IDMD ID+
Sbjct: 426 LLKNLALSGFRQIHVIDMDTIDV 448
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 24.5 bits (54), Expect = 5.5
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 25 ERVNKLKTENDMLEEKIKILS-RELSFLKNLF 55
++V L+ +N +L +++ L + S L +L+
Sbjct: 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLY 54
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 24.9 bits (54), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 50 FLKNLFLAHAGSTNGIDMDDIDL 72
LKNL L+ + IDMD ID+
Sbjct: 55 LLKNLALSGFRQIHVIDMDTIDV 77
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo
sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 25.1 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 50 FLKNLFLAHAGSTNGIDMDDIDL 72
LKNL L + ID+D ID+
Sbjct: 32 LLKNLVLTGFSHIDLIDLDTIDV 54
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo
helical reconstruction, de novo protein; HET: PHI;
2.31A {Synthetic}
Length = 28
Score = 22.8 bits (48), Expect = 8.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 27 VNKLKTENDMLEEKIKILSRELSFLK 52
++ L+ END LE+KI L ++++ LK
Sbjct: 2 IDALEFENDALEQKIAALKQKIASLK 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.125 0.332
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,436,438
Number of extensions: 74498
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 42
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)