RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12101
         (105 letters)



>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor
          protein-binding protein 1, APPBP1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 529

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 51 LKNLFLAHAGSTNGIDMDDIDLESL 75
          LKNL L   GS   ID + +  E  
Sbjct: 41 LKNLVLPGIGSFTIIDGNQVSGEDA 65


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 23.0 bits (49), Expect = 4.9
 Identities = 6/34 (17%), Positives = 17/34 (50%)

Query: 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54
          ++ ++ +  L+  N  L+++   L   +   K+L
Sbjct: 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79


>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
           (Hansenula polymorpha) [TaxId: 4905]}
          Length = 436

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 79  AVDTPPSVPCTSSRSN 94
            +D  PS   T+S + 
Sbjct: 418 GLDIQPSYAMTTSEAK 433


>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
           (Escherichia coli K-12) [TaxId: 83333]}
          Length = 467

 Score = 23.8 bits (50), Expect = 5.8
 Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 3/47 (6%)

Query: 11  RSRVKSRIKT---QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54
               +        Q   + +  L  +    +EK+ +L     +   +
Sbjct: 421 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEI 467


>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 387

 Score = 23.8 bits (50), Expect = 6.4
 Identities = 4/19 (21%), Positives = 5/19 (26%)

Query: 84  PSVPCTSSRSNYNSSSLST 102
            + P       Y     ST
Sbjct: 43  GAAPHPFLHRYYQRQLSST 61


>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl
          carrier protein, ACT ACP {Streptomyces coelicolor,
          A3(2) [TaxId: 1902]}
          Length = 86

 Score = 22.6 bits (48), Expect = 8.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 51 LKNLFLAHAGSTNGIDMDDIDLESLLAD 78
          L+   +  AG T+G D+    L+    D
Sbjct: 10 LRRALVECAGETDGTDLSGDFLDLRFED 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.125    0.332 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,915
Number of extensions: 13499
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 13
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.6 bits)