BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12107
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 151/296 (51%), Gaps = 45/296 (15%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV---HPDI 96
F +L + + ISP+D+ LPYSSGTTG+PKGV L+H ++ Q V +P++
Sbjct: 159 FSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 97 VNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP 156
H S++ +L VLP FHIY N I+ + G ++ +PKF + + + KYK
Sbjct: 219 YFH------SEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKV 272
Query: 157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
+I VVP +++ +A P + L+S+R + G AP K L D + K + + QGY
Sbjct: 273 SIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA--RLGQGY 330
Query: 217 GMTETSP----CTLYTR--FAIPEAKLGST----------------------------GQ 242
GMTE P C + + F I G+ G
Sbjct: 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390
Query: 243 LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+M GYL + EAT T+D EGWLHTGD+ Y D+D +IVDR KELIK KG QVAP
Sbjct: 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 446
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 137/267 (51%), Gaps = 37/267 (13%)
Query: 62 AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYG 121
A++ SSG+TG+PKGV+L+H N V C P N I DT+ +L+V+PF H +G
Sbjct: 227 ALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQI-IPDTA---ILTVIPFHHGFG 282
Query: 122 FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA 181
L + G ++ + +F E ++ + YK +VP+L F A V L+
Sbjct: 283 MFTTLG-YLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLS 341
Query: 182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT---RFAIPEA--- 235
++ E+ G AP K + + ++ + IRQGYG+TET+ + T R P A
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAIIITPRGRDDKPGACGK 399
Query: 236 ------------------------KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVA 271
+L G ++M GY+ N EAT +D +GWLH+GD+A
Sbjct: 400 VVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIA 459
Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
YYD+DGYF+IVDR K LIK KG QV P
Sbjct: 460 YYDKDGYFFIVDRLKSLIKYKGYQVPP 486
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
+E++ QV K+L GGVKF++ +P+ GK+ +++
Sbjct: 531 QEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIR 571
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 154/306 (50%), Gaps = 46/306 (15%)
Query: 32 DKSKNIFGFKQL---VTSQ-PPDFQ----LPKISPND--LAMLPYSSGTTGVPKGVKLSH 81
D + GF+ + VTS PP F +P+ D +A++ SSG+TG+PKGV L H
Sbjct: 158 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
AV P N I DT+ +LSV+PF H +G L ++ G ++ + +
Sbjct: 218 RALAVRFSHARDPIFGNQI-APDTA---ILSVVPFHHGFGMFTTLGY-LISGFRVVLMYR 272
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
F E ++ + YK +VP+L FLA + L+++ E+ G AP +K + +
Sbjct: 273 FEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 332
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAK------------- 236
++ IRQGYG+TET+ L T +P EAK
Sbjct: 333 AKRFHLPG--IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 390
Query: 237 ----LGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
L G ++M GY+ N EAT +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 391 QRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 450
Query: 293 GNQVAP 298
G QVAP
Sbjct: 451 GCQVAP 456
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK 334
KE++ +QV KKL GGV F++ +P+ GK+ +++ KK
Sbjct: 501 KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 549
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 142/281 (50%), Gaps = 45/281 (16%)
Query: 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV---HPDIVNHIPTSDTSQETVL 111
+ISP+D+ LPYSSGTTG+PKGV L+H ++ Q V +P++ H S + +L
Sbjct: 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFH------SDDVIL 274
Query: 112 SVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
VLP FHIY N I+ + G ++ +PKF +E + + K T+ +VP ++L +A
Sbjct: 275 CVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK 334
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP-------- 223
L+SIR V GAAP K L D K + + QGYGMTE P
Sbjct: 335 SSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKF--PNAKLGQGYGMTEAGPVLAMSLGF 392
Query: 224 -----------CTLYTRFA---IPEAKLGST------------GQLVMLGYLKNEEATKE 257
C R A I + G + G +M GYL N AT E
Sbjct: 393 AKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAE 452
Query: 258 TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T+D +GWLHTGD+ D+D +IVDR KELIK KG QVAP
Sbjct: 453 TIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 283 DRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
D K+ + QV YK++ V F E+IP+ P+GK+LR +L+
Sbjct: 538 DDVKQFVS---KQVVFYKRI-NKVFFTESIPKAPSGKILRKDLR 577
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 50/290 (17%)
Query: 48 PPDFQLPKIS------PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
PP FQ +A++ SSG+TG+PKGV+L+H N P N +
Sbjct: 175 PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV- 233
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
+ VL+V+PF H +G L ++ G ++ + KF ET+++ + YK T + +
Sbjct: 234 ---SPGTAVLTVVPFHHGFGMFTTLGY-LICGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
VP+L L + L+++ E+ G AP +K + + ++ +RQGYG+TET
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTET 347
Query: 222 SPCTLYTRFAIPEA--KLGSTGQLV-------------------------------MLGY 248
+ + T PE K G++G++V M GY
Sbjct: 348 TSAIIIT----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ N EATKE +D EGWLHTGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKV 320
KE++ +QV+ K+L GGV+F++ +P+ GK+
Sbjct: 498 KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 50/290 (17%)
Query: 48 PPDFQLPKIS------PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
PP FQ +A++ SSG+TG+PKGV+L+H N P N +
Sbjct: 175 PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV- 233
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
+ VL+V+PF H +G L ++ G ++ + KF ET+++ + YK T + +
Sbjct: 234 ---SPGTAVLTVVPFHHGFGMFTTLGY-LICGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
VP+L L + L+++ E+ G AP +K + + ++ +RQGYG+TET
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTET 347
Query: 222 SPCTLYTRFAIPEA--KLGSTGQLV-------------------------------MLGY 248
+ + T PE K G++G++V M GY
Sbjct: 348 TSAIIIT----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ N EATKE +D EGWLHTGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKV 320
KE++ +QV+ K+L GGV+F++ +P+ GK+
Sbjct: 498 KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 46/306 (15%)
Query: 32 DKSKNIFGFKQL---VTSQ-PPDFQLPKISPND------LAMLPYSSGTTGVPKGVKLSH 81
D + GF+ + VTS PP F P +A++ SSG+TG+PKGV L H
Sbjct: 153 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
V P N I DT+ +LSV+PF H +G L ++ G ++ + +
Sbjct: 213 RTACVRFSHARDPIFGNQI-IPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR 267
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
F E ++ + YK +VP+L F A + L+++ E+ G AP +K + +
Sbjct: 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 327
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAKL-----GST---- 240
++ IRQGYG+TET+ L T +P EAK+ G T
Sbjct: 328 AKRFHLPG--IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385
Query: 241 --------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
G ++M GY+ N EAT +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 445
Query: 293 GNQVAP 298
G QVAP
Sbjct: 446 GYQVAP 451
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK 334
KE++ +QV KKL GGV F++ +P+ GK+ +++ KK
Sbjct: 496 KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 544
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 46/306 (15%)
Query: 32 DKSKNIFGFKQL---VTSQ-PPDFQLPKISPND------LAMLPYSSGTTGVPKGVKLSH 81
D + GF+ + VTS PP F P +A++ SSG+TG+PKGV L H
Sbjct: 153 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
V P N I DT+ +LSV+PF H +G L ++ G ++ + +
Sbjct: 213 RTACVRFSHARDPIFGNQI-IPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR 267
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
F E ++ + YK +VP+L F A + L+++ E+ G AP +K + +
Sbjct: 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 327
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAKL-----GST---- 240
++ IRQGYG+TET+ L T +P EAK+ G T
Sbjct: 328 AKRFHLPG--IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385
Query: 241 --------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
G ++M GY+ N EAT +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 445
Query: 293 GNQVAP 298
G QVAP
Sbjct: 446 GYQVAP 451
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK 334
KE++ +QV KKL GGV F++ +P+ GK+ +++ KK
Sbjct: 496 KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 544
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 50/290 (17%)
Query: 48 PPDFQLPKIS------PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
PP +Q +A++ SSG+TG+PKGV+L+H N P N +
Sbjct: 175 PPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV- 233
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
+ VL+V+PF H +G L ++ G ++ + KF ET+++ + YK T + +
Sbjct: 234 ---SPGTAVLTVVPFHHGFGMFTTLGY-LICGFRVVMLTKFDEETFLKTLQDYKCTNVIL 289
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
VP+L L + L+++ E+ G AP +K + + ++ +RQGYG+TET
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTET 347
Query: 222 SPCTLYTRFAIPEA--KLGSTGQLV-------------------------------MLGY 248
+ + T PE K G++G++V M GY
Sbjct: 348 TSAIIIT----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ N EATKE +D EGWLHTGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKV 320
KE++ +QV+ K+L GGV+F++ +P+ GK+
Sbjct: 498 KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 46/306 (15%)
Query: 32 DKSKNIFGFKQL---VTSQ-PPDFQLPKISPND------LAMLPYSSGTTGVPKGVKLSH 81
D + GF+ + VTS PP F P +A++ SSG+TG+PKGV L H
Sbjct: 158 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
V P N I DT+ +LSV+PF H +G L ++ G ++ + +
Sbjct: 218 RTACVRFSHARDPIFGNQI-IPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR 272
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
F E ++ + YK +VP+L F A + L+++ E+ G AP +K + +
Sbjct: 273 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 332
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAKL-----GST---- 240
++ IRQGYG+TET+ L T +P EAK+ G T
Sbjct: 333 AKRFHLPG--IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 390
Query: 241 --------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
G ++M GY+ N EAT +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 391 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 450
Query: 293 GNQVAP 298
G QVAP
Sbjct: 451 GYQVAP 456
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK 334
KE++ +QV KKL GGV F++ +P+ GK+ +++ KK
Sbjct: 501 KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 549
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 50/275 (18%)
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
+ Y++GTTG+PKGV SH ++ + +V+ T+ + ++ VL V+P FH+ +
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLH---SLAASLVDG--TALSEKDVVLPVVPMFHVNAWC 235
Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
++ ++ P+ P + +E T VP++ L LA + T L ++
Sbjct: 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL 295
Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT--------------- 228
R + G + A +SLI +F +R + +RQGYG+TETSP +
Sbjct: 296 RRLVVGGSAAPRSLIARF----ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 351
Query: 229 ---------------RFAIPEAK--------LGST---GQLVMLGYLKNEEATKETVDSE 262
R A E + LG G + GY NEEAT+ + +
Sbjct: 352 TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 411
Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
G+ TGD+A +DE+GY I DR K+LIK G ++
Sbjct: 412 GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWIS 446
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 141/317 (44%), Gaps = 55/317 (17%)
Query: 25 IVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPN-DLAMLPYSSGTTGVPKGVKLSHNN 83
VVGGE + ++ S DF+ K++P D+A++PY+ GTTG PKGV L+H N
Sbjct: 151 FVVGGE------VNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFN 204
Query: 84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT 143
A N Q + T + +T++ P FH F G++N+ + G + F
Sbjct: 205 LAANALQLA-------VATGLSHXDTIVGCXPXFHSAEF-GLVNLXVTVGNEYVVXGXFN 256
Query: 144 PETYIECVVKYKPTILFVVPSLLLFLAS--HPAVTPEHLASIREVTCGAAPATKSLIDKF 201
E E + KYK T + VP L L + + + ++ GA P +L++K
Sbjct: 257 QEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKL 316
Query: 202 ----KQKVQREDITIRQGYGMTETSPCTL---------YTRFAIP--------------- 233
+K + Q +G TE P T +P
Sbjct: 317 LKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGR 376
Query: 234 EAKLGSTGQLVML------GYLKNEEATKET--VDSEG--WLHTGDVAYYDEDGYFYIVD 283
E +G +G++V+ GY K E+ +E D +G + TGDV + DE+G+ + D
Sbjct: 377 ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQD 436
Query: 284 RTKELIKVKGNQVAPYK 300
R KE+IK KG +AP++
Sbjct: 437 RVKEVIKYKGYTIAPFE 453
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 44/270 (16%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS-QETVLSVLPFF 117
+D + Y+SGTTG PKGV +H + VH + T D ++ +L LP F
Sbjct: 170 DDNLFIMYTSGTTGHPKGVVHTH--------ESVHSAASSWASTIDVRYRDRLLLPLPMF 221
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
H+ ++ M G+ +I++P+F +V+ + I VP++L F+ P
Sbjct: 222 HVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE 280
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET---------------- 221
R G AP ++LI + K +I + QGY +TE+
Sbjct: 281 LDAPDFRYFITGGAPMPEALIKIYAAK----NIEVVQGYALTESCGGGTLLLSEDALRKA 336
Query: 222 ---SPCTLYTRFAIP----------EAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG 268
T++T A+ E ++ +++ Y EAT++ D+ GW TG
Sbjct: 337 GSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTG 395
Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
D+ D++GY YI DR K++I G V P
Sbjct: 396 DIGEIDDEGYLYIKDRLKDMIISGGENVYP 425
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 112/269 (41%), Gaps = 41/269 (15%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+DLA + Y+SGTTG KG LSH+N A N V D P + ++ LP +H
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+G NV + I +PKF P+ ++ + T+L VP+ L P +T E
Sbjct: 208 THGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFYTRLLQSPRLTKE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
R G+AP L D ++ + + + YG TET+ T
Sbjct: 266 TTGHXRLFISGSAPL---LADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAK----LGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
+ R PE G G + V GY + E TK +G+ TGD
Sbjct: 323 GPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ DE GY +I+ R K+L+ G V P
Sbjct: 383 LGKIDERGYVHILGRGKDLVITGGFNVYP 411
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+DLA + Y+SGTTG G LSH+N A N V D P + ++ LP +H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+G NV + MI +P F P+ ++ + + T+L VP+ L P +T E
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQSPRLTXE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
+R G+AP L D ++ + + YGMTET+ T
Sbjct: 266 TTGHMRLFISGSAPL---LADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAKL----GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
+ R PE G G + V GY + E T +G+ TGD
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
+ DE GY +I+ R +L+ G V P +
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXE 413
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+DLA + Y+SGTTG G LSH+N A N V D P + ++ LP +H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+G NV + MI +P F P+ ++ + + T+L VP+ L P +T E
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQSPRLTXE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
+R G+AP L D ++ + + YGMTET+ T
Sbjct: 266 TTGHMRLFISGSAPL---LADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAKL----GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
+ R PE G G + V GY + E T +G+ TGD
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
+ DE GY +I+ R +L+ G V P +
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXE 413
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+DLA + Y+SGTTG G LSH+N A N V D P + ++ LP +H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+G NV + MI +P F P+ ++ + + T+L VP+ L P +T E
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQSPRLTXE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
+R G+AP L D ++ + + YGMTET+ T
Sbjct: 266 TTGHMRLFISGSAPL---LADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAKL----GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
+ R PE G G + V GY + E T +G+ TGD
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
+ DE GY +I+ R +L+ G V P +
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXE 413
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 44/255 (17%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS-QETVLSVLPFF 117
+D + Y+SGTTG PKGV +H + VH + T D ++ +L LP F
Sbjct: 156 DDNLFIMYTSGTTGHPKGVVHTH--------ESVHSAASSWASTIDVRYRDRLLLPLPMF 207
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
H+ ++ M G+ +I++P+F +V+ + I VP++L F+ P
Sbjct: 208 HVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE 266
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET---------------- 221
R G AP ++LI + K +I + QGY +TE+
Sbjct: 267 LDAPDFRYFITGGAPMPEALIKIYAAK----NIEVVQGYALTESCGGGTLLLSEDALRKA 322
Query: 222 ---SPCTLYTRFAIP----------EAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG 268
T++T A+ E ++ +++ Y EAT++ D+ GW TG
Sbjct: 323 GSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTG 381
Query: 269 DVAYYDEDGYFYIVD 283
D+ D++GY YI D
Sbjct: 382 DIGEIDDEGYLYIKD 396
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 130/327 (39%), Gaps = 51/327 (15%)
Query: 5 PQLLEVGTK----IGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
P ++ GT + LP+ G D S FK L + P F P+ D
Sbjct: 104 PSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP--FSAPEFGAAD 161
Query: 61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
++ +++ G P+G +S N + V + T + L +LP FH+
Sbjct: 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRL-------TEADVNLGMLPLFHVT 214
Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
G G++ + G + KF P + +K T++ +L + A P L
Sbjct: 215 GL-GLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQL 271
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---------- 230
AS+R VT P T I++F+ + T +G +ETS + + +
Sbjct: 272 ASLRAVTGLDTPET---IERFEATC--PNATFWATFGQSETSGLSTFAPYRDRPKSAGRP 326
Query: 231 ------AIPEAKL-----GSTGQLVMLG------YLKNEEATKETVDSEGWLHTGDVAYY 273
A+ +A+ G G++V+ G Y N AT+ GW HTGD+ +
Sbjct: 327 LFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRF 385
Query: 274 DEDGYFYIVDRT--KELIKVKGNQVAP 298
D DGY + R KELIK G V P
Sbjct: 386 DADGYLFYAGRAPEKELIKTGGENVYP 412
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 64/327 (19%)
Query: 10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSG 69
+ ++ + LP + IV G +++ + L T +P +LP++ +D+A L S G
Sbjct: 140 LARQVQSKLPTLKNIIVAG----EAEEFLPLEDLHT-EP--VKLPEVKSSDVAFLQLSGG 192
Query: 70 TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GILN 127
+TG+ K + +H++ +L++ V ++H L+ LP H Y + G+L
Sbjct: 193 STGLSKLIPRTHDDYIYSLKRSVEVCWLDH-------STVYLAALPMAHNYPLSSPGVLG 245
Query: 128 VVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVT 187
V + G ++ P +P+ + + K TI +VP L + + + L+S++ +
Sbjct: 246 V-LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304
Query: 188 CGAAPATKSLIDKFKQKVQRE-----DITIRQGYGMTETSPCTLYTRFAIPE-------- 234
G A KF + R T++Q +GM E YTR PE
Sbjct: 305 VGGA--------KFSAEAARRVKAVFGCTLQQVFGMAEG--LVNYTRLDDPEEIIVNTQG 354
Query: 235 ------------------AKLGSTGQLV------MLGYLKNEEATKETVDSEGWLHTGDV 270
K G TG L+ + GY K EE + +G+ TGD+
Sbjct: 355 KPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVA 297
DGY + R K+ I G +VA
Sbjct: 415 VRLTRDGYIVVEGRAKDQINRGGEKVA 441
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 64/327 (19%)
Query: 10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSG 69
+ ++ + LP + IV G +++ + L T +P +LP++ +D+A L S G
Sbjct: 140 LARQVQSKLPTLKNIIVAG----EAEEFLPLEDLHT-EP--VKLPEVKSSDVAFLQLSGG 192
Query: 70 TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GILN 127
+TG+ K + +H++ +L++ V ++H L+ LP H Y + G+L
Sbjct: 193 STGLSKLIPRTHDDYIYSLKRSVEVCWLDH-------STVYLAALPXAHNYPLSSPGVLG 245
Query: 128 VVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVT 187
V + G ++ P +P+ + + K TI +VP L + + L+S++ +
Sbjct: 246 V-LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQ 304
Query: 188 CGAAPATKSLIDKFKQKVQRE-----DITIRQGYGMTETSPCTLYTRFAIPE-------- 234
G A KF + R T++Q +G E YTR PE
Sbjct: 305 VGGA--------KFSAEAARRVKAVFGCTLQQVFGXAEG--LVNYTRLDDPEEIIVNTQG 354
Query: 235 ------------------AKLGSTGQLV------MLGYLKNEEATKETVDSEGWLHTGDV 270
K G TG L+ + GY K EE + +G+ TGD+
Sbjct: 355 KPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVA 297
DGY + R K+ I G +VA
Sbjct: 415 VRLTRDGYIVVEGRAKDQINRGGEKVA 441
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 48/270 (17%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
+D+A + ++SGTTG K V + N A+ ++ + D DT+ LSVLP
Sbjct: 163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-------RDTNW---LSVLP 212
Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
+HI G + +L V+ G + + KF E + + + T + +VP L +L
Sbjct: 213 IYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH 271
Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-------SPCTLYT 228
P +L +++ G A + ++I+ Q ++ I +GMTET +P L+
Sbjct: 272 EPYNL---QKILLGGAKLSATMIETALQY----NLPIYNSFGMTETCSQFLTATPEMLHA 324
Query: 229 R---FAIPEA---------------KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDV 270
R +P A +L G VM GYL + T G+ +TGD+
Sbjct: 325 RPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDI 382
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
A D +GY I DR K+LI G + PY+
Sbjct: 383 AEIDHEGYVMIYDRRKDLIISGGENIYPYQ 412
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 48/285 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
P + P+ P A + Y+SGTTG+PK A+ ++ ++ +
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + I +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q + E + I YG TE +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI---YGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
+LY R E ++ G G+L++ +GYL E
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPE 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
AT E + +GW T DVA + +G I+ R ++I G + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 48/285 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
P + P+ P A + Y+SGTTG+PK A+ ++ ++ +
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q + E + GYG TE +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN---GYGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
+LY R E ++ G G+L++ +GYL +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
AT E + +GW T DVA + +G I+ R ++I G + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 48/285 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
P + P+ P A + Y+SGTTG+PK A+ ++ ++ +
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q + E + I YG TE +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI---YGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
+LY R E ++ G G+L++ +GYL +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
AT E + +GW T DVA + +G I+ R ++I G + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 118/285 (41%), Gaps = 48/285 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
P + P+ P A + Y+SGTTG+PK A+ ++ ++ +
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q + E + I YG TE
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI---YGTTEAM- 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
+LY R E ++ G G+L++ +GYL +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
AT E + +GW T DVA + +G I+ R ++I G + P
Sbjct: 371 ATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHP 414
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 119/314 (37%), Gaps = 72/314 (22%)
Query: 50 DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
D L + PND+A L Y+SG+T P+GV ++H NL H D + P +
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISH-DGIKLRPG-----DR 219
Query: 110 VLSVLPFFHIYGFNGIL--NVVMMYGMHMITIPKFT--PETYIECVVKYKPTILFVVP-- 163
+S LPF+H G G L V + + F P +++ + K + T+ P
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFG 279
Query: 164 -SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ---KVQREDITIRQGYGMT 219
L + + L+ R GA P + + +F + +V ++ T YG+
Sbjct: 280 YELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLA 339
Query: 220 ETSPCTLYTRFA--------------------IPEAKLGSTGQLVMLG--------YLKN 251
E + ++ A P A+ + V G ++N
Sbjct: 340 ENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN 399
Query: 252 E---------------------------EATKETVDSEGWLHTGDVAYYDEDGYFYIVDR 284
E + +++ + + GWL TGD+ Y DGY Y+ R
Sbjct: 400 EAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGR 458
Query: 285 TKELIKVKGNQVAP 298
K+LI ++G + P
Sbjct: 459 IKDLIIIRGRNIWP 472
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 48/285 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
P + P+ P A + Y+SGTTG+PK A+ ++ ++ +
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q + E + YG TE +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN---AYGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
+LY R E ++ G G+L++ +GYL +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
AT E + +GW T DVA + +G I+ R ++I G + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 48/285 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
P + P+ P A + Y+SGTTG+PK A+ ++ ++ +
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFXSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL + P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q + E + I YG TE +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI---YGTTE-AX 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
+LY R E ++ G G+L++ +GYL +
Sbjct: 311 NSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
AT E + +GW T DVA + +G I+ R + I G + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHP 414
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 115/306 (37%), Gaps = 60/306 (19%)
Query: 42 QLVTSQPPDFQLPKISP--------------------NDLAMLPYSSGTTGVPKGVKLSH 81
QL+ SQP + + P+++P +D+A YSSG+TG PKG +H
Sbjct: 147 QLIVSQPRESE-PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH 205
Query: 82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
N E P + + V S F YG L + G I + +
Sbjct: 206 ANLYWTAELYAKPIL------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259
Query: 142 F-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDK 200
T + +V+++PT+ + VP+L + P + +IR T + + ++
Sbjct: 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGER 319
Query: 201 FKQKVQREDITIRQGYGMTETSPCTLYTR-------------------------FAIPEA 235
F E I G G TE L R A+P+
Sbjct: 320 FTAHFGCE---ILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDG 376
Query: 236 KLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
++G G + Y N E ++ T E W+ +GD +G + R+ +++KV
Sbjct: 377 EVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVS 435
Query: 293 GNQVAP 298
G V+P
Sbjct: 436 GQYVSP 441
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 63/318 (19%)
Query: 27 VGGEHDKSKNIFGFKQLVTSQPPDFQLP----KISPNDLAMLPYSSGTTGVPKGVKLSHN 82
VGG D + F++ + P F+ P D+ ++ +SSGT G PK V+ H+
Sbjct: 191 VGG--DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVE--HD 246
Query: 83 NC-------AVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH 135
N Q V D +++ + V L YG V +Y
Sbjct: 247 NTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKL-----YGQWIAGCAVFVYDYD 301
Query: 136 MITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATK 195
+F + +E KY T P++ FL ++ + ++++ P
Sbjct: 302 -----RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNP 355
Query: 196 SLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE--------------------- 234
+ ++F ++ I + +G+G TET + P+
Sbjct: 356 EVFNRF---LEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGR 412
Query: 235 -AKLGSTGQLVM-----------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIV 282
++G G++V+ + Y K+ E T+ET +G+ HTGD+A+ DEDGY + V
Sbjct: 413 LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471
Query: 283 DRTKELIKVKGNQVAPYK 300
R ++IK G +V P++
Sbjct: 472 GRADDIIKTSGYKVGPFE 489
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 111/275 (40%), Gaps = 50/275 (18%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
D A++ Y+SGTTG PKG + A L+ T ++ ++ LP FH
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALAD-------AWQWTGEDVLVQGLPLFH 207
Query: 119 IYGFNGILNVV--MMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT 176
++G +L ++ + G + + +F+ E + T+LF VP++ +A
Sbjct: 208 VHGL--VLGILGPLRRGGSVRHLGRFSTEGAARE-LNDGATMLFGVPTMYHRIAETLPAD 264
Query: 177 PE---HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT-------- 225
PE LA R + G+A ++ R I + YGMTET T
Sbjct: 265 PELAKALAGARLLVSGSAALPVHDHERIAAATGRRVI---ERYGMTETLMNTSVRADGEP 321
Query: 226 ---------------LYTRFAIPEAKLG--STGQLVMLG------YLKNEEATKETVDSE 262
L P A L S G++ + G YL +AT +
Sbjct: 322 RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381
Query: 263 GWLHTGDVAYYDEDGYFYIVDR-TKELIKVKGNQV 296
G+ TGD+A D DGY IV R +LIK G ++
Sbjct: 382 GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 114/280 (40%), Gaps = 65/280 (23%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSH---NNCAVNLEQCVHPDIVNHIP--TSDTSQETVLSVL 114
DLA + Y+SGTTG PKG L H +N V E ++ + I S + +V +
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM- 241
Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTP-ETYIECVVKYKPTILFVVPSLLLFLASHP 173
F +L +Y + TI F E YI + + T++ + P+ ++ L
Sbjct: 242 -------FMALLTGASLYIILKDTINDFVKFEQYIN---QKEITVITLPPTYVVHL---- 287
Query: 174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY------ 227
PE + SI+ + + + SL++K+K+KV T YG TET+ C
Sbjct: 288 --DPERILSIQTLITAGSATSPSLVNKWKEKV-----TYINAYGPTETTICATTWVATKE 340
Query: 228 --------------TRFAIPEAKL-----GSTGQLVM------LGYLKNEEATKET---- 258
T+ I + L G G+L + GY K E T +
Sbjct: 341 TIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN 400
Query: 259 --VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
V E TGD A + DG + R +K++G++V
Sbjct: 401 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV 440
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 111/289 (38%), Gaps = 56/289 (19%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
P D+A + Y+SGTTG PKGV + H N L P + + S + +
Sbjct: 170 PGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA--PSVFDF---SGDDRWLLFHS 224
Query: 114 LPF-FHIYGFNGILNVVMMYGMHMITIPKF---TPETYIECVVKYKPTILFVVPSLLLFL 169
L F F ++ G + G ++ +P + TPE Y+ ++ T++ P+ L L
Sbjct: 225 LSFDFSVWEIWGAFST----GAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLAL 280
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM----------- 218
++ +R V G T ++ + + + + GYG+
Sbjct: 281 TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEE 340
Query: 219 -TET---SPCTLYTRFAIP------------EAKLGSTGQLVMLG------YLKNEEATK 256
TE ++ R A+P + G TG+L + G YL+ E T
Sbjct: 341 ITEAYLAQDASIIGR-ALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTA 399
Query: 257 E---------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
E T +S + TGD+ DG F R IK++G ++
Sbjct: 400 EKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRI 448
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTS-DTSQET 109
+Q I ND+A L Y+SG+T PKGV +SH+N NL N I TS + ET
Sbjct: 159 WQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNL---------NKIFTSFHXNDET 209
Query: 110 VL-SVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTI 158
++ S LP H G G + + G+ I F+ P ++++ + KYK TI
Sbjct: 210 IIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATI 263
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 47/273 (17%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+++A S G+TG PK + +HN+ ++ +N S +L LP H
Sbjct: 191 DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-------SNTRLLCALPAPH 243
Query: 119 IYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT 176
+ + G L V+ G ++ P P + +++ + +VPS ++ A
Sbjct: 244 NFMLSSPGALGVLHAGGC-VVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY 302
Query: 177 PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF------ 230
+ + S++ + G A +SL +Q + + ++Q +GM E YTR
Sbjct: 303 KDQIQSLKLLQVGGASFPESLA---RQVPEVLNCKLQQVFGMAEG--LVNYTRLDDSDEQ 357
Query: 231 -----------------------AIPEAKLG---STGQLVMLGYLKNEEATKETVDSEGW 264
+PE ++G + G GY ++ E + D + +
Sbjct: 358 IFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
++GD+ DG +V R K+ I G ++A
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIA 450
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 55/288 (19%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVL 114
+ D L Y+SG+TG PKGV+ H+ L ++ T DT QE V +
Sbjct: 259 VDSEDPLFLLYTSGSTGAPKGVQ--HSTAGYLLGA-----LLTMRYTFDTHQEDVFFTAG 311
Query: 115 PFFHIYGFNGILNVVMMYGMHMITI------PKFTPETYIECVVKYKPTILFVVPSLLLF 168
I G ++ ++YG + P ++ Y + + ++K T +V P+ L
Sbjct: 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS--RYWDIIDEHKVTQFYVAPTALRL 369
Query: 169 L--ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--- 223
L A + L S+R + P + + + +K+ + +I I Y TE+
Sbjct: 370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429
Query: 224 -------------CTLYTRFAIPEAKLG-STGQLVMLGYLKNEEATKETVDS-------- 261
+ F I L +TG+ + + + A K S
Sbjct: 430 TPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKN 489
Query: 262 ------------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
G+ TGD A D+DGY +I+ R +++ V G++++
Sbjct: 490 HDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLS 537
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94 PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
P + + T+D T S L +YG +M+ +P + TP + V
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
K++ IL+ P+ + L A+ +S+R + P + + +K+ +E
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
+ + TET + E K GS + V + NE +E V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ W +GD A DEDGY++I R +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 119/305 (39%), Gaps = 56/305 (18%)
Query: 29 GEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNL 88
GEH+ + + DF +++A S GTTG PK + +HN+ ++
Sbjct: 161 GEHN-------LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV 213
Query: 89 EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GILNVVMMYGMHMITIPKFTPET 146
+ V +I T Q L +P H Y + G L V + G ++ +
Sbjct: 214 RRSV--EICQF-----TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT-VVLAADPSATL 265
Query: 147 YIECVVKYKPTILFVVP-SLLLFL-ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQK 204
+ K++ + +VP ++ L+L A + LAS++ + G A + +L + +
Sbjct: 266 CFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325
Query: 205 VQREDITIRQGYGMTETSPCTLYTRFA-----------------------------IPEA 235
+ ++Q +GM E YTR +P+
Sbjct: 326 I---GCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQG 380
Query: 236 KLG---STGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
++G + G GY K+ + D+ G+ +GD+ D +GY + R K+ I
Sbjct: 381 EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG 440
Query: 293 GNQVA 297
G ++A
Sbjct: 441 GEKIA 445
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 66/333 (19%)
Query: 9 EVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
EV T + + P+ R ++V FK+L+ + + + + ++S
Sbjct: 159 EVDT-VASECPSLRIKLLV--SEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTS 215
Query: 69 GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
GT+G+PK + S+++ + + D + + + I ILN+
Sbjct: 216 GTSGLPKMAEHSYSSLGLKAKM-------------DAGWTGLQASDIMWTISDTGWILNI 262
Query: 129 VMM----YGMHMIT----IPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE-- 178
+ + + T +PKF P ++ + Y + P + L + +
Sbjct: 263 LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFP 322
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLYTRFAIPEAKL 237
HL + VT G + ++L + Q + IR+ YG TET C + I +
Sbjct: 323 HLQNC--VTVGESLLPETLENWRAQT----GLDIRESYGQTETGLTCMVSKTMKIKPGYM 376
Query: 238 GSTGQL--------------------------------VMLGYLKNEEATKETVDSEGWL 265
G+ + GY+ N + T + + WL
Sbjct: 377 GTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL 436
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GD DEDGYF + R ++I G ++ P
Sbjct: 437 -LGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 66/333 (19%)
Query: 9 EVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
EV T + + P+ R ++V FK+L+ + + + + ++S
Sbjct: 159 EVDT-VASECPSLRIKLLV--SEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTS 215
Query: 69 GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
GT+G+PK + S+++ + + D + + + I ILN+
Sbjct: 216 GTSGLPKMAEHSYSSLGLKAKM-------------DAGWTGLQASDIMWTISDTGWILNI 262
Query: 129 VMM----YGMHMIT----IPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE-- 178
+ + + T +PKF P ++ + Y + P + L + +
Sbjct: 263 LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFP 322
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLYTRFAIPEAKL 237
HL + VT G + ++L + Q + IR+ YG TET C + I +
Sbjct: 323 HLQNC--VTVGESLLPETLENWRAQT----GLDIRESYGQTETGLTCMVSKTMKIKPGYM 376
Query: 238 GSTGQL--------------------------------VMLGYLKNEEATKETVDSEGWL 265
G+ + GY+ N + T + + WL
Sbjct: 377 GTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL 436
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GD DEDGYF + R ++I G ++ P
Sbjct: 437 -LGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 99/289 (34%), Gaps = 64/289 (22%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNN-CAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
+ P D+A + ++SG+TG PKGV H L Q D P E L
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ----DYAGFGP-----DEVFLQCS 261
Query: 115 PF-FHIYGFNGILNVVMMYGMHMITIPKFTPE--TYIECVVKYKPTILFVVPSLLLFLAS 171
P + +G L +++G + P+ E V ++ T+L + SL FL
Sbjct: 262 PVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
PE +R G PA+ + K +R+ +R G G T A
Sbjct: 320 E---VPEAFEGVRYAITGGEPASVPHV----AKARRDHPALRLGNGYGPAESMGFTTHHA 372
Query: 232 IPEAKL----------------------------GSTGQLVML------GYLKNEEATKE 257
+ L G+ G+L + GY+ T E
Sbjct: 373 VVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAE 432
Query: 258 TV--------DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
E TGD+A DG V R + +K++G +V P
Sbjct: 433 RFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEP 481
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 21/176 (11%)
Query: 62 AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV--NHIPTSDTSQETVLSVLPFFHI 119
A L Y+SG+T P GV SH N VN EQ + IP +++ ++S LPF+H
Sbjct: 186 AYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSA---LVSWLPFYHD 242
Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPT------ILFVVPSLLLFLASHP 173
G + ++ G + +P ++++ ++ P+ LA+
Sbjct: 243 XGLVIGICAPILGGYPAVLT---SPVSFLQRPARWXHLXASDFHAFSAAPNFAFELAARR 299
Query: 174 AVTPE----HLASIREVTCGAAPATKSLIDKFKQKVQR---EDITIRQGYGMTETS 222
+ L +I + G+ + I +F + R ++ IR YG+ E +
Sbjct: 300 TTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEAT 355
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 62 AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV--NHIPTSDTSQETVLSVLPFFHI 119
A L Y+SG+T P GV +SH N VN EQ + + IP +++ ++S LPF+H
Sbjct: 186 AYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSA---LVSWLPFYHD 242
Query: 120 YGF 122
G
Sbjct: 243 MGL 245
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 110/282 (39%), Gaps = 55/282 (19%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
I PND A + Y+SGTTG PKG +H N ++ V+++ SD Q+T LSV
Sbjct: 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKH------VDYMAFSD--QDTFLSVSN 655
Query: 116 F-FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTILFVVPSLLLFL-- 169
+ F + F+ M+ +I + T E + +++ ++F +L L
Sbjct: 656 YAFDAFTFD--FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTD 713
Query: 170 ------------------ASHPAVT-------PEHLASIREVTCGAAPATKSLIDKFKQK 204
AS P V P L + T G AT ++
Sbjct: 714 AGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773
Query: 205 VQR----EDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETV- 259
+ + I+ Y + E S + A+ E L +G V GY+ + TKE
Sbjct: 774 ISSLPIGKPISNASVYILNEQSQLQPFG--AVGE--LCISGMGVSKGYVNRADLTKEKFI 829
Query: 260 -----DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
E TGD+A + DG R + +K++G+++
Sbjct: 830 ENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRI 871
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 70/189 (37%), Gaps = 22/189 (11%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNN-CAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
+ P D+A + ++SG+TG PKGV H L Q D P E L
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ----DYAGFGP-----DEVFLQCS 261
Query: 115 PF-FHIYGFNGILNVVMMYGMHMITIPKFTPE--TYIECVVKYKPTILFVVPSLLLFLAS 171
P + +G L +++G + P+ E V ++ T+L + SL FL
Sbjct: 262 PVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
PE +R G PA+ + K +R+ +R G G T A
Sbjct: 320 E---VPEAFEGVRYAITGGEPASVPHV----AKARRDHPALRLGNGYGPAESMGFTTHHA 372
Query: 232 IPEAKLGST 240
+ L T
Sbjct: 373 VVAGDLSGT 381
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 106/283 (37%), Gaps = 62/283 (21%)
Query: 58 PNDL-AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTS----DTSQETVLS 112
P +L A L Y+SG+TG PKGV++S +N + + I N P S + L+
Sbjct: 173 PENLDAYLLYTSGSTGTPKGVRVSRHNLS-SFSDAWGKLIGNVAPKSLELGGVGKFLCLA 231
Query: 113 VLPF-FHIYGFNGILNVVMMYGMHMITIPKFT-----PETYIECVVKYKPTILFVVPSLL 166
F HI G + +G+ +T + + P T+ E V + +VPSLL
Sbjct: 232 SRAFDVHI----GEXFLAWRFGLCAVTGERLSXLDDLPRTFRELGVTHAG----IVPSLL 283
Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRED-ITIRQGYGMTETSPCT 225
+ PE + + G T + +Q D + + YG TE +
Sbjct: 284 ----DQTGLVPEDAPHLVYLGVGGEKXTP----RTQQIWSSSDRVALVNVYGPTEVTIGC 335
Query: 226 LYTRFAIPEA-------------------------KLGSTGQLVMLGYLK-----NEEAT 255
R +P++ K G G+LV+ G L N
Sbjct: 336 SAGRI-LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDA 394
Query: 256 KETVDSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
K D G TGD+ D D + R E +KV+G ++
Sbjct: 395 KGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRL 437
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 66 YSSGTTGVPKGVKLSHNNC 84
++SGTTG PKGV++SH+N
Sbjct: 152 FTSGTTGQPKGVQISHDNL 170
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 240 TGQLVMLGYLKNEEATKE---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
TG V GYL N E T E T + HTGD+ ED R IK G ++
Sbjct: 354 TGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRI 413
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 20 NFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSG---TTGVPKG 76
+F+ +V+ G DK+ ++ LV + Q S D ++ +S T K
Sbjct: 111 SFQDGVVISGSWDKTAKVWKEGSLVY----NLQAHNASVWDAKVVSFSENKFLTASADKT 166
Query: 77 VKLSHNNCAVNLEQCVHPDIVNHIPTSD 104
+KL N+ + +H D+V H+ D
Sbjct: 167 IKLWQNDKVIKTFSGIHNDVVRHLAVVD 194
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 221 TSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEE---------ATKETVDSEGWLHTGDVA 271
+SPCTLY IP ++ G+ E A+ + +D EG TGD+
Sbjct: 75 SSPCTLYPE--IPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIG 132
Query: 272 YYD----EDGYFYIVDRTKELI 289
YD +D YFY+ R EL
Sbjct: 133 VYDCQNLDDQYFYVRSRGPELF 154
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 88/214 (41%), Gaps = 20/214 (9%)
Query: 18 LPNFRGTIVVGGEH--------DKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSG 69
+P++R T G H D +K F K + P F L + + + SSG
Sbjct: 44 VPHYRRTFDAAGVHPDDLKSLADLAKFPFSTKNDLRDNYP-FGLFAVPREQVVRVHASSG 102
Query: 70 TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVV 129
TTG P V + A +++ + + +T+ + + G GI
Sbjct: 103 TTGKPTVVGYT----ARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGA 158
Query: 130 MMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS---HPAVTPEHLASIREV 186
G ++ + E ++ + ++P I+ V PS +L L + P +S++
Sbjct: 159 ERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAE-SSLKIG 217
Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
GA P T++L ++ + +V + + I YG++E
Sbjct: 218 IFGAEPWTQALRNEVETRVGIDALDI---YGLSE 248
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH 81
+ P P + + +A + +SSGTTG PK + +H
Sbjct: 151 AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTH 186
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 145 ETYIECVVKYKPTILFVVPSLLLFLAS---HPAVTPEHLASIREVTCGAAPATKSLIDKF 201
E ++ + ++P I+ V PS +L +A + P +S+R GA P T +
Sbjct: 172 EKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQ-SSLRIGIFGAEPWTNDMRVAI 230
Query: 202 KQKVQREDITIRQGYGMTE 220
+Q++ + + I YG++E
Sbjct: 231 EQRMGIDAVDI---YGLSE 246
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
Y+SG+TG PKGV++++ NC V+ + D
Sbjct: 151 YTSGSTGNPKGVQITY-NCLVSFTKWAVED 179
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
Y+SG+TG PKGV++++ NC V+ + D
Sbjct: 151 YTSGSTGNPKGVQITY-NCLVSFTKWAVED 179
>pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
Length = 280
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 39 GFKQLVTSQPPDF-QLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVH 93
G Q++ S F ++ + N A +P + GTTG +G+ + H +NL+ +
Sbjct: 72 GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 127
>pdb|2I1S|A Chain A, Crystal Structure Of Protein Of Unknown Function Mm3350
From Methanosarcina Mazei Go1
pdb|2I1S|B Chain B, Crystal Structure Of Protein Of Unknown Function Mm3350
From Methanosarcina Mazei Go1
Length = 188
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 191 APATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLK 250
A T D ++ KV+ E I R+ E CT R A+PE G G ML LK
Sbjct: 101 ALYTYDFGDNWQVKVRLEKILPRKE--GVEYPICTAGKRAAVPEDSGGVWGYEEMLEVLK 158
Query: 251 NEEATKETVDSEGWLHTG-DVAYYD 274
+ E +E D+ WL D Y+D
Sbjct: 159 DSEH-EEYEDTVLWLGDDFDPEYFD 182
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 252 EEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLET 311
E K V+ G H+GD A + +VD E+ K G VA Y + G K +ET
Sbjct: 41 ERGAKVVVNDLGGTHSGDGA--SQRAADIVVD---EIRKAGGEAVADYNSVIDGAKVIET 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,619,722
Number of Sequences: 62578
Number of extensions: 460196
Number of successful extensions: 1174
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 142
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)