Query psy12107
Match_columns 334
No_of_seqs 196 out of 2313
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 18:55:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2.8E-54 9.5E-59 405.1 24.9 317 4-331 128-535 (536)
2 3rix_A Luciferase, luciferin 4 100.0 1.7E-53 5.9E-58 400.8 22.7 323 3-333 128-543 (550)
3 2d1s_A Luciferase, luciferin 4 100.0 5.8E-53 2E-57 396.8 24.8 321 3-332 130-544 (548)
4 4fuq_A Malonyl COA synthetase; 100.0 8.9E-53 3E-57 391.8 22.6 268 54-334 150-503 (503)
5 3r44_A Fatty acyl COA syntheta 100.0 7.1E-53 2.4E-57 393.7 20.1 265 54-332 165-514 (517)
6 3etc_A AMP-binding protein; ad 100.0 4.7E-52 1.6E-56 392.7 25.2 308 9-331 172-579 (580)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.5E-52 5E-57 393.5 19.9 303 10-330 140-530 (539)
8 1pg4_A Acetyl-COA synthetase; 100.0 2E-51 6.8E-56 393.4 26.9 316 9-332 200-622 (652)
9 3o83_A Peptide arylation enzym 100.0 4.7E-52 1.6E-56 390.5 20.3 308 10-332 145-541 (544)
10 1v25_A Long-chain-fatty-acid-C 100.0 7.8E-52 2.7E-56 388.7 21.1 314 3-332 125-537 (541)
11 3g7s_A Long-chain-fatty-acid-- 100.0 6.3E-52 2.1E-56 390.1 19.0 313 4-332 131-543 (549)
12 3c5e_A Acyl-coenzyme A synthet 100.0 1.3E-50 4.5E-55 382.2 26.1 312 3-331 152-562 (570)
13 1ry2_A Acetyl-coenzyme A synth 100.0 2.2E-50 7.4E-55 386.6 23.8 317 8-332 206-638 (663)
14 2v7b_A Benzoate-coenzyme A lig 100.0 3.9E-50 1.3E-54 376.5 24.8 313 4-328 127-529 (529)
15 3rg2_A Enterobactin synthase c 100.0 2.7E-50 9.2E-55 383.8 23.6 304 11-330 141-533 (617)
16 3tsy_A Fusion protein 4-coumar 100.0 2.5E-50 8.6E-55 402.4 20.9 291 36-332 199-583 (979)
17 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.3E-50 2.2E-54 372.9 20.6 267 54-330 148-503 (504)
18 3fce_A D-alanine--poly(phospho 100.0 1.3E-49 4.5E-54 371.5 20.7 268 54-333 139-506 (512)
19 3ivr_A Putative long-chain-fat 100.0 6.3E-50 2.2E-54 373.4 16.9 306 4-332 110-502 (509)
20 3nyq_A Malonyl-COA ligase; A/B 100.0 1.2E-49 3.9E-54 370.9 18.5 263 54-328 150-505 (505)
21 3ipl_A 2-succinylbenzoate--COA 100.0 1.2E-49 4.3E-54 370.7 18.6 260 55-332 159-498 (501)
22 4gs5_A Acyl-COA synthetase (AM 100.0 8.4E-50 2.9E-54 355.5 15.9 257 58-333 36-356 (358)
23 3e7w_A D-alanine--poly(phospho 100.0 4.4E-49 1.5E-53 367.8 20.7 283 37-331 120-503 (511)
24 4dg8_A PA1221; ANL superfamily 100.0 7.1E-49 2.4E-53 373.1 22.1 263 54-331 159-513 (620)
25 3l8c_A D-alanine--poly(phospho 100.0 1.2E-48 4E-53 365.9 23.0 271 54-333 140-514 (521)
26 4gr5_A Non-ribosomal peptide s 100.0 2.3E-48 7.9E-53 367.4 18.6 261 54-329 209-569 (570)
27 1amu_A GRSA, gramicidin synthe 100.0 2.2E-47 7.4E-52 359.8 17.5 256 55-330 178-528 (563)
28 3kxw_A Saframycin MX1 syntheta 100.0 5.8E-48 2E-52 366.5 12.1 271 54-332 162-568 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 3.7E-46 1.3E-50 353.1 20.9 269 54-331 171-563 (576)
30 2vsq_A Surfactin synthetase su 100.0 3.6E-45 1.2E-49 373.9 20.3 261 54-329 602-958 (1304)
31 3ite_A SIDN siderophore synthe 100.0 1.8E-45 6.1E-50 347.3 15.0 268 54-331 170-543 (562)
32 3qov_A Phenylacetate-coenzyme 100.0 9.9E-42 3.4E-46 312.1 13.1 229 55-297 81-342 (436)
33 2y27_A Phenylacetate-coenzyme 100.0 1.4E-40 4.7E-45 304.6 12.9 229 54-297 85-344 (437)
34 2y4o_A Phenylacetate-coenzyme 100.0 3.2E-40 1.1E-44 302.7 14.3 229 54-297 87-346 (443)
35 3t5a_A Long-chain-fatty-acid-- 100.0 1.4E-39 4.8E-44 301.5 12.9 228 54-284 178-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.3E-29 8E-34 225.1 13.3 224 55-294 87-368 (369)
37 4eql_A 4-substituted benzoates 98.5 4.2E-08 1.4E-12 90.8 3.4 34 264-297 399-436 (581)
38 4b2g_A GH3-1 auxin conjugating 98.3 2.2E-07 7.7E-12 86.1 3.2 34 264-297 411-448 (609)
39 4epl_A Jasmonic acid-amido syn 98.2 2.5E-07 8.5E-12 85.5 1.6 34 264-297 406-443 (581)
40 3lax_A Phenylacetate-coenzyme 98.0 1.4E-06 4.9E-11 62.7 1.0 15 283-297 1-15 (109)
41 3gxs_A Phenylacetate-coenzyme 97.8 9.5E-06 3.3E-10 58.3 2.3 15 283-297 1-15 (109)
42 3ezx_A MMCP 1, monomethylamine 83.1 12 0.00042 29.6 10.2 93 106-200 92-194 (215)
43 3ni2_A 4-coumarate:COA ligase; 76.8 11 0.00037 34.4 9.1 97 57-166 35-132 (536)
44 3g7s_A Long-chain-fatty-acid-- 75.3 20 0.00067 32.8 10.4 103 58-168 33-137 (549)
45 3ivr_A Putative long-chain-fat 71.5 15 0.0005 33.3 8.5 96 58-168 20-116 (509)
46 1t5h_X 4-chlorobenzoyl COA lig 69.0 28 0.00097 31.3 9.8 98 58-168 16-116 (504)
47 3r44_A Fatty acyl COA syntheta 66.9 32 0.0011 31.1 9.7 95 58-165 30-125 (517)
48 3t5a_A Long-chain-fatty-acid-- 66.8 26 0.0009 31.1 9.1 104 58-170 38-147 (480)
49 3etc_A AMP-binding protein; ad 65.1 30 0.001 32.0 9.2 97 57-163 69-166 (580)
50 2d1s_A Luciferase, luciferin 4 65.0 27 0.00093 31.9 8.9 84 78-167 52-136 (548)
51 1amu_A GRSA, gramicidin synthe 64.2 35 0.0012 31.3 9.5 97 57-168 52-149 (563)
52 1v25_A Long-chain-fatty-acid-C 63.9 23 0.0008 32.3 8.2 100 58-168 32-132 (541)
53 1ry2_A Acetyl-coenzyme A synth 63.2 44 0.0015 31.4 10.1 98 57-163 95-194 (663)
54 2v7b_A Benzoate-coenzyme A lig 62.7 24 0.00081 32.0 8.0 95 57-166 36-131 (529)
55 3rix_A Luciferase, luciferin 4 62.2 21 0.00071 32.7 7.6 86 78-169 50-136 (550)
56 3c5e_A Acyl-coenzyme A synthet 58.3 31 0.0011 31.7 8.0 103 57-168 56-159 (570)
57 4gr5_A Non-ribosomal peptide s 57.7 46 0.0016 30.5 9.1 94 57-165 88-182 (570)
58 3o83_A Peptide arylation enzym 55.5 50 0.0017 30.1 8.9 92 57-163 43-135 (544)
59 4fuq_A Malonyl COA synthetase; 54.6 41 0.0014 30.3 8.1 80 79-164 29-109 (503)
60 3tsy_A Fusion protein 4-coumar 54.3 46 0.0016 33.0 9.0 96 57-165 74-170 (979)
61 3kxw_A Saframycin MX1 syntheta 52.5 64 0.0022 29.5 9.2 102 58-170 25-130 (590)
62 1pg4_A Acetyl-COA synthetase; 50.9 39 0.0013 31.7 7.5 97 58-163 90-187 (652)
63 2i2x_B MTAC, methyltransferase 49.3 58 0.002 26.4 7.4 88 106-197 123-218 (258)
64 3fce_A D-alanine--poly(phospho 48.2 54 0.0019 29.5 7.8 79 78-162 26-105 (512)
65 3l8c_A D-alanine--poly(phospho 42.2 56 0.0019 29.4 6.9 79 79-163 30-109 (521)
66 1mdb_A 2,3-dihydroxybenzoate-A 41.6 67 0.0023 29.2 7.4 80 78-163 50-130 (539)
67 3gqw_A Fatty acid AMP ligase; 40.5 92 0.0032 28.3 8.2 85 78-168 49-141 (576)
68 3e7w_A D-alanine--poly(phospho 38.8 74 0.0025 28.6 7.2 80 78-162 26-106 (511)
69 3ipl_A 2-succinylbenzoate--COA 38.2 1.1E+02 0.0036 27.4 8.1 77 78-163 26-103 (501)
70 3nyq_A Malonyl-COA ligase; A/B 35.8 1.3E+02 0.0044 27.0 8.2 76 78-164 48-124 (505)
71 3rg2_A Enterobactin synthase c 35.1 1.1E+02 0.0038 28.2 7.9 91 58-163 39-130 (617)
72 3ite_A SIDN siderophore synthe 31.8 1.3E+02 0.0043 27.4 7.6 98 58-163 34-134 (562)
73 1y80_A Predicted cobalamin bin 30.7 1.8E+02 0.0063 22.3 9.1 90 107-198 89-186 (210)
74 4dg8_A PA1221; ANL superfamily 27.1 1.3E+02 0.0046 27.8 6.9 90 58-162 41-131 (620)
75 4e4g_A Methylmalonate-semialde 24.9 3.8E+02 0.013 24.3 9.3 68 106-173 162-239 (521)
76 3bul_A Methionine synthase; tr 24.9 2.4E+02 0.0081 26.1 7.8 89 106-198 98-194 (579)
77 2trc_P Phosducin, MEKA, PP33; 24.2 20 0.00068 28.4 0.5 18 67-85 3-20 (217)
78 3ju8_A Succinylglutamic semial 20.9 4.5E+02 0.015 23.5 9.2 89 106-205 139-237 (490)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.8e-54 Score=405.05 Aligned_cols=317 Identities=37% Similarity=0.602 Sum_probs=252.9
Q ss_pred cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchH
Q psy12107 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~ 83 (334)
+..+.+.+.++.... .+ .++.++... .+...++++........+....+++|+++|+|||||||.||||+++|++
T Consensus 128 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~ 202 (536)
T 3ni2_A 128 QACYYEKVKDFARES-DV-KVMCVDSAP---DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKG 202 (536)
T ss_dssp CGGGTHHHHHHHHHH-TC-EEEESSCCC---TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHH
T ss_pred ChHHHHHHHHHHhhc-Cc-eEEEecCCC---CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHH
Confidence 344555555554433 22 344444322 2456777777432222233456789999999999999999999999999
Q ss_pred HHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeech
Q psy12107 84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p 163 (334)
+.+............ ......+++++.+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|
T Consensus 203 l~~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P 279 (536)
T 3ni2_A 203 LITSVAQQVDGDNPN---LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP 279 (536)
T ss_dssp HHHHHHHHHCSSSCS---SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECH
T ss_pred HHHHHHHHHhhcccc---ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccH
Confidence 988766543322111 12568899999999999999977788899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc---C---------
Q psy12107 164 SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---A--------- 231 (334)
Q Consensus 164 ~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~--------- 231 (334)
+++..|++.......++++||.+++||+++++++.+++++.|+ +++++|.||+||++.+++.+.. .
T Consensus 280 ~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~ 357 (536)
T 3ni2_A 280 PVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357 (536)
T ss_dssp HHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCC
T ss_pred HHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCe
Confidence 9999999987767778999999999999999999999999996 5689999999999865443210 0
Q ss_pred ----------------CCCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceE
Q psy12107 232 ----------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289 (334)
Q Consensus 232 ----------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i 289 (334)
......+..|++ ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.||+|
T Consensus 358 G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 437 (536)
T 3ni2_A 358 GTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELI 437 (536)
T ss_dssp CEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCE
T ss_pred eEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceE
Confidence 001122334444 7889999999999999889999999999999999999999999999
Q ss_pred EEcCEEee---------------------------------------------------------eeeeccCcEEEeecC
Q psy12107 290 KVKGNQVA---------------------------------------------------------PYKKLAGGVKFLETI 312 (334)
Q Consensus 290 ~~~G~~i~---------------------------------------------------------~~~~~~~~i~~v~~l 312 (334)
|++|++|+ .+++|+. |+++++|
T Consensus 438 k~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~-i~~v~~l 516 (536)
T 3ni2_A 438 KYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKR-VFFIEAI 516 (536)
T ss_dssp EETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSE-EEECSCC
T ss_pred EECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccE-EEEEecC
Confidence 99999999 5667777 9999999
Q ss_pred CCCCCchhhHHHHhhhhcC
Q psy12107 313 PRNPAGKVLRNELKVFGTN 331 (334)
Q Consensus 313 P~t~~GKi~r~~l~~~~~~ 331 (334)
|+|++|||+|++|++++.+
T Consensus 517 P~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 517 PKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp CBCTTSCBCHHHHHTC---
T ss_pred CCCCCCCeeHHHHHHHhcc
Confidence 9999999999999998764
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.7e-53 Score=400.84 Aligned_cols=323 Identities=31% Similarity=0.515 Sum_probs=212.4
Q ss_pred CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc--CC--C---CCCCCCCCCCCCEEEEecCCCCCCCch
Q psy12107 3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT--SQ--P---PDFQLPKISPNDLAMLPYSSGTTGVPK 75 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~--~~--~---~~~~~~~~~~~~~a~i~~TSGTTG~PK 75 (334)
.+.+..+.+.++...+|.++.+++++...+ ..+..++.+++. .. . ...+.....++|+++|+|||||||.||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 206 (550)
T 3rix_A 128 VSKKGLQKILNVQKKLPIIQKIIIMDSKTD-YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 206 (550)
T ss_dssp ECGGGHHHHHHHHHHCTTCCEEEETTCSSC-BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCC
T ss_pred EcHHHHHHHHHHHhhCCCcceEEEEcCCcc-ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcc
Confidence 356677788888888999999888775432 234567777762 11 1 111112234579999999999999999
Q ss_pred hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcC
Q psy12107 76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155 (334)
Q Consensus 76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~ 155 (334)
||+++|+++..+.......... ....+++++++.+|++|.+++.. .+.++..|+++++.+.++++.+++.|++++
T Consensus 207 gV~~th~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~ 281 (550)
T 3rix_A 207 GVALPHRTACVRFSHARDPIFG----NQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYK 281 (550)
T ss_dssp EEEEEHHHHHHHHHHHTCTTTS----CCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHhhhhhcc----ccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCCCCHHHHHHHHHHcC
Confidence 9999999998877655443211 12568899999999999999876 678899999999999999999999999999
Q ss_pred CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---
Q psy12107 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--- 232 (334)
Q Consensus 156 ~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--- 232 (334)
+|+++++|+++..|++.......++++||.+++||+++++++.+++.+.|+. ..++|.||+||++.+++......
T Consensus 282 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~~~~~ 359 (550)
T 3rix_A 282 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEGDDKP 359 (550)
T ss_dssp CSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTTCCCT
T ss_pred CeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCCCCCC
Confidence 9999999999999998877667788999999999999999999999999974 24889999999987655432211
Q ss_pred --------------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCC
Q psy12107 233 --------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK 286 (334)
Q Consensus 233 --------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~ 286 (334)
.+...+..|++ ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.|
T Consensus 360 ~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp TEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred CCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 11122344544 7889999999999999889999999999999999999999999
Q ss_pred ceEEEcCEEee---------------------------------------------------------eeeeccCcEEEe
Q psy12107 287 ELIKVKGNQVA---------------------------------------------------------PYKKLAGGVKFL 309 (334)
Q Consensus 287 d~i~~~G~~i~---------------------------------------------------------~~~~~~~~i~~v 309 (334)
|+||++|++|+ +++.++..|+++
T Consensus 440 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v 519 (550)
T 3rix_A 440 SLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV 519 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEE
Confidence 99999999999 444555449999
Q ss_pred ecCCCCCCchhhHHHHhhhhcCCC
Q psy12107 310 ETIPRNPAGKVLRNELKVFGTNPK 333 (334)
Q Consensus 310 ~~lP~t~~GKi~r~~l~~~~~~~~ 333 (334)
++||+|++|||+|++|++++.+.+
T Consensus 520 ~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 520 DEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp ------------------------
T ss_pred eecCCCCCcceeHHHHHHHHHhhc
Confidence 999999999999999999986643
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.8e-53 Score=396.83 Aligned_cols=321 Identities=31% Similarity=0.569 Sum_probs=255.3
Q ss_pred CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc-CCCCCCCCCCCC-----C-CCEEEEecCCCCCCCch
Q psy12107 3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT-SQPPDFQLPKIS-----P-NDLAMLPYSSGTTGVPK 75 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PK 75 (334)
.+.+..+.+.++.+.+|..+.+++++... ...+...|++++. ......+..... + +|+++|+|||||||.||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 208 (548)
T 2d1s_A 130 SSKKGLDKVITVQKTVTTIKTIVILDSKV-DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPK 208 (548)
T ss_dssp ECTTTHHHHHHHHHHSTTCCEEEETTCSS-CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCC
T ss_pred EcHHHHHHHHHHhcCCCCCCEEEEeCCcc-cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCC
Confidence 34556667777777777677777765421 1112456777773 211101111222 4 89999999999999999
Q ss_pred hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcC
Q psy12107 76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155 (334)
Q Consensus 76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~ 155 (334)
||+++|+++..+.......... ....+++++++.+|++|.+++...++.++ .|+++++.+.++++.+++.|++++
T Consensus 209 gv~~sh~~~~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~ 283 (548)
T 2d1s_A 209 GVQLTHENIVTRFSHARDPIYG----NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYK 283 (548)
T ss_dssp CEEEEHHHHHHHHHHHTCTTTS----CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTT
T ss_pred EEEecHHHHHHHHHHhhchhhc----cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcC
Confidence 9999999998877665543210 12568899999999999999877667777 999999999899999999999999
Q ss_pred CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---
Q psy12107 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--- 232 (334)
Q Consensus 156 ~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--- 232 (334)
+|+++++|+++..|.+.......++++||.+++||+++++++.+++.+.|+ ++.+++.||+||++.+++......
T Consensus 284 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~ 361 (548)
T 2d1s_A 284 CTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEGDDKP 361 (548)
T ss_dssp EEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTTCCCT
T ss_pred CcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcccCCC
Confidence 999999999999999876655667899999999999999999999999996 457999999999987654322110
Q ss_pred --------------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCC
Q psy12107 233 --------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK 286 (334)
Q Consensus 233 --------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~ 286 (334)
.+...+..|++ ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.|
T Consensus 362 ~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~ 441 (548)
T 2d1s_A 362 GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441 (548)
T ss_dssp TCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGG
T ss_pred CCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecccc
Confidence 01122334444 7889999999999999889999999999999999999999999
Q ss_pred ceEEEcCEEee---------------------------------------------------------eeeecc-CcEEE
Q psy12107 287 ELIKVKGNQVA---------------------------------------------------------PYKKLA-GGVKF 308 (334)
Q Consensus 287 d~i~~~G~~i~---------------------------------------------------------~~~~~~-~~i~~ 308 (334)
|+||++|++|+ +++.|+ . |++
T Consensus 442 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~-i~~ 520 (548)
T 2d1s_A 442 SLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGG-VRF 520 (548)
T ss_dssp GCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTC-EEE
T ss_pred ceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccccccc-EEE
Confidence 99999999999 566777 5 999
Q ss_pred eecCCCCCCchhhHHHHhhhhcCC
Q psy12107 309 LETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 309 v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
+++||+|++|||+|++|++.+.+.
T Consensus 521 v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 521 VDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp CSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred ccCCCCCCcchhHHHHHHHHHhhh
Confidence 999999999999999999987653
No 4
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.9e-53 Score=391.79 Aligned_cols=268 Identities=32% Similarity=0.456 Sum_probs=231.0
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
...+++|+++|+|||||||.||||+++|+++.++.......+ ...++|++++.+|++|.+++....+.++..|
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g 222 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-------RFTPDDVLIHALPIYHTHGLFVASNVTLFAR 222 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-------TCCTTCEEEECSCSSSHCCCCCCHHHHHHTT
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-------CCCCCCEEEEeCChHHHHHHHHHHHHHHHhC
Confidence 456789999999999999999999999999998876665544 2678999999999999998766567888999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107 134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR 213 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~ 213 (334)
+++++.+.++++.+++.++ ++|+++++|+++..|++........++++|.+++||+++++++.+.+.+.++. +++
T Consensus 223 ~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~---~~~ 297 (503)
T 4fuq_A 223 GSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH---AVL 297 (503)
T ss_dssp CEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC---CEE
T ss_pred CEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC---Ccc
Confidence 9999999999999999998 89999999999999999877777788999999999999999999999999974 799
Q ss_pred eccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107 214 QGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW 264 (334)
Q Consensus 214 ~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~ 264 (334)
|.||+||++...+...... .+...|..|++ ++.||+++|+.|.+.|..+||
T Consensus 298 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 377 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF 377 (503)
T ss_dssp ECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSC
T ss_pred ceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCC
Confidence 9999999986544322111 11223444444 788999999999999988999
Q ss_pred eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------- 297 (334)
Q Consensus 265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------- 297 (334)
|+|||+|++++||+++++||.||+||++|++|+
T Consensus 378 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 457 (503)
T 4fuq_A 378 FITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQ 457 (503)
T ss_dssp EEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHH
T ss_pred eEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHH
Confidence 999999999999999999999999999999999
Q ss_pred ----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCCC
Q psy12107 298 ----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK 334 (334)
Q Consensus 298 ----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~~ 334 (334)
++++|.. |+++++||+|++|||+|++|++.+++..|
T Consensus 458 l~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~R~~L~~~~~~~~k 503 (503)
T 4fuq_A 458 VLHGLDGQLAKFKMPKK-VIFVDDLPRNTMGKVQKNVLRETYKDIYK 503 (503)
T ss_dssp HHHHHBTTBCGGGCCSE-EEEESCCCBCTTSCBCHHHHHHHTTTTTC
T ss_pred HHHHHHhhcccCCCCCE-EEEECCCCCCcccceeHHHHHHHHHHhhC
Confidence 6667777 99999999999999999999999987654
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.1e-53 Score=393.72 Aligned_cols=265 Identities=30% Similarity=0.505 Sum_probs=223.1
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++|+++|+|||||||.||||+++|+++.++.......+ ....+|++++.+|++|.+++...++..+ .|
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G 236 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-------DVRYRDRLLLPLPMFHVAALTTVIFSAM-RG 236 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-------CCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-------CCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence 456789999999999999999999999999988877655544 2678999999999999999887555555 99
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107 134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR 213 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~ 213 (334)
+++++.+.+++..+++.|+++++|++.++|+++..|.+.+.....++++||.+++||+++++++.+.+.+. +++++
T Consensus 237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~----~~~~~ 312 (517)
T 3r44_A 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK----NIEVV 312 (517)
T ss_dssp CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT----TCEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc----CCcEE
Confidence 99999999999999999999999999999999999988765555678899999999999999999999876 34899
Q ss_pred eccCCCCCCCcccccccCCCCccccC-----------------------cccc------ccccccCCccccccccCCCCc
Q psy12107 214 QGYGMTETSPCTLYTRFAIPEAKLGS-----------------------TGQL------VMLGYLKNEEATKETVDSEGW 264 (334)
Q Consensus 214 ~~YG~tE~g~~~~~~~~~~~~~~~~~-----------------------~G~~------~~~gy~~~~~~~~~~~~~~~~ 264 (334)
|.||+||++...+...........++ .|++ ++.||+++|+.|.+.| .+||
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~ 391 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAF-DNGW 391 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEETTCHHHHHHTE-ETTE
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhCCChhhhHhhh-cCCC
Confidence 99999999865543222111011111 2333 7889999999999999 6899
Q ss_pred eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------- 297 (334)
Q Consensus 265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------- 297 (334)
|+|||+|++++||+++++||.||+||++|++|+
T Consensus 392 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l 471 (517)
T 3r44_A 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQI 471 (517)
T ss_dssp EEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHH
T ss_pred EecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHH
Confidence 999999999999999999999999999999999
Q ss_pred ---------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 298 ---------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 298 ---------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
++++|.. |+++++||+|++|||+|++|++.+.+.
T Consensus 472 ~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 472 VEYCGTRLARYKLPKK-VIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp HHHHHHHSCGGGSCSE-EEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCCCCE-EEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 6667777 999999999999999999999998653
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.7e-52 Score=392.73 Aligned_cols=308 Identities=23% Similarity=0.369 Sum_probs=229.7
Q ss_pred HHHHHHhhhCCCC-ceEEEEcCCCCCCCCccchhhhhcCCCCCCC-C---CCCCCCCEEEEecCCCCCCCchhhhhcchH
Q psy12107 9 EVGTKIGATLPNF-RGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQ-L---PKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83 (334)
Q Consensus 9 ~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~-~---~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~ 83 (334)
+.+.++...++.+ ..++.++... ..++..|.+++........ + ....++|+++|+|||||||.||+|+++|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~ 249 (580)
T 3etc_A 172 EQVDEAHAECGDIPLKKAKVGGDV--LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY 249 (580)
T ss_dssp HHHHHHHHHHCSCCCEEEEESSSC--CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTH
T ss_pred HHHHHHhhhCCCcceEEEEeCCcc--ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHH
Confidence 6677777777777 6677776432 2356788888732221111 1 246789999999999999999999999998
Q ss_pred HHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEc--CCCCHHHHHHHHHHcCCeEEee
Q psy12107 84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI--PKFTPETYIECVVKYKPTILFV 161 (334)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~i~~~~~t~l~~ 161 (334)
+........... ...+++++++..|++|..+....++.++..|+++++. ..+++..+++.|+++++|++++
T Consensus 250 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~ 322 (580)
T 3etc_A 250 PLGHILTAKYWQ-------NVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCA 322 (580)
T ss_dssp HHHHHHHHHTTS-------CCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHhh-------CCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEc
Confidence 887665543332 2678899999999999888876678889999999887 4689999999999999999999
Q ss_pred chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC--------
Q psy12107 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP-------- 233 (334)
Q Consensus 162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~-------- 233 (334)
+|++++.|.+. .....++++||.+++||+++++++.+++.+.++. ++++.||+||++.+++.......
T Consensus 323 ~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p 398 (580)
T 3etc_A 323 PPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGI---KLMEGFGQTETVVTIATFPWMEPKPGSIGKP 398 (580)
T ss_dssp CHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHHSC---CCEEEECCTTSSCCEECCTTSCCCTTCCBEE
T ss_pred cHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHhCC---eEecccccccccceeecCCCCCCCCCccccC
Confidence 99999999886 3456678999999999999999999999999864 79999999999865543321110
Q ss_pred --------------CccccCcccc-----------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCce
Q psy12107 234 --------------EAKLGSTGQL-----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL 288 (334)
Q Consensus 234 --------------~~~~~~~G~~-----------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~ 288 (334)
+...|..|++ ++.||+++|+.|.+.| .+|||+|||+|++|+||+++++||.||+
T Consensus 399 ~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~ 477 (580)
T 3etc_A 399 TPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDI 477 (580)
T ss_dssp CTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSC
T ss_pred CCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCE
Confidence 1122333333 5678999999999999 5899999999999999999999999999
Q ss_pred EEEcCEEee------------------------------------------------------------eeeeccCcEEE
Q psy12107 289 IKVKGNQVA------------------------------------------------------------PYKKLAGGVKF 308 (334)
Q Consensus 289 i~~~G~~i~------------------------------------------------------------~~~~~~~~i~~ 308 (334)
||++|++|+ ++++|+. |++
T Consensus 478 Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~ 556 (580)
T 3etc_A 478 IKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRI-IEF 556 (580)
T ss_dssp EEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSE-EEE
T ss_pred EEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeE-EEE
Confidence 999999999 5777887 999
Q ss_pred eecCCCCCCchhhHHHHhhhhcC
Q psy12107 309 LETIPRNPAGKVLRNELKVFGTN 331 (334)
Q Consensus 309 v~~lP~t~~GKi~r~~l~~~~~~ 331 (334)
+++||+|++|||+|++||+++.+
T Consensus 557 v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 557 VPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ECC--------------------
T ss_pred eCCCCCCCCcCCcHHHHHhHhhc
Confidence 99999999999999999998764
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.5e-52 Score=393.48 Aligned_cols=303 Identities=26% Similarity=0.406 Sum_probs=243.2
Q ss_pred HHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhh
Q psy12107 10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLE 89 (334)
Q Consensus 10 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~ 89 (334)
.+.++...+|.++.+++.++.. .|.++........+.....++|+++|+|||||||.||||+++|+++.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~ 212 (539)
T 1mdb_A 140 LARQVQSKLPTLKNIIVAGEAE-------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLK 212 (539)
T ss_dssp HHHHHHHHCTTCCCEEEESCCT-------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHH
T ss_pred HHHHHHhcCCCccEEEEcCCcc-------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHH
Confidence 4445555677777777654321 233333211111122356789999999999999999999999999988776
Q ss_pred hhccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107 90 QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~ 168 (334)
.....+ ...+++++++.+|++|.+++.. .++.++..|+++++.+.++++.+++.|+++++|+++++|+++..
T Consensus 213 ~~~~~~-------~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 285 (539)
T 1mdb_A 213 RSVEVC-------WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMV 285 (539)
T ss_dssp HHHHHH-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHHhh-------CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHH
Confidence 554433 2568899999999999999875 57889999999999999999999999999999999999999999
Q ss_pred HhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC--------------C--
Q psy12107 169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA--------------I-- 232 (334)
Q Consensus 169 l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~--------------~-- 232 (334)
|++.......++++||.+++||+++++++.+++.+.++. +++|.||+||++......... .
T Consensus 286 l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 362 (539)
T 1mdb_A 286 WMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC---TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDE 362 (539)
T ss_dssp HHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS---EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCE
T ss_pred HHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC---cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCce
Confidence 987654445678899999999999999999999999864 899999999976433221110 0
Q ss_pred --------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-
Q psy12107 233 --------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA- 297 (334)
Q Consensus 233 --------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~- 297 (334)
.+...|..|++ ++.||+++|+.|.+.|..+|||+|||+|++++||+++++||.||+||++|++|+
T Consensus 363 ~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p 442 (539)
T 1mdb_A 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA 442 (539)
T ss_dssp EEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECH
T ss_pred EEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECH
Confidence 01122344554 789999999999999988999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------eeeeccCcEEEeecCCCCCCchhh
Q psy12107 298 --------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVL 321 (334)
Q Consensus 298 --------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~ 321 (334)
.+++|.. |+++++||+|++|||+
T Consensus 443 ~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~-i~~v~~lP~t~~GKi~ 521 (539)
T 1mdb_A 443 EEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVS 521 (539)
T ss_dssp HHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSE-EEECSSCCBCTTSCBC
T ss_pred HHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCE-EEEeccCCCCCCcCEe
Confidence 4556666 9999999999999999
Q ss_pred HHHHhhhhc
Q psy12107 322 RNELKVFGT 330 (334)
Q Consensus 322 r~~l~~~~~ 330 (334)
|++|++.+.
T Consensus 522 r~~L~~~~~ 530 (539)
T 1mdb_A 522 KKALREAIS 530 (539)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2e-51 Score=393.44 Aligned_cols=316 Identities=19% Similarity=0.261 Sum_probs=246.8
Q ss_pred HHHHHHhhhCC--CCceEEEEcCCCCC----CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107 9 EVGTKIGATLP--NFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 9 ~~~~~~~~~~~--~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
+.+.+++..++ .++.+++++..... ......|++++.......+....+++|+++|+|||||||.||||+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~ 279 (652)
T 1pg4_A 200 KNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTG 279 (652)
T ss_dssp HHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESH
T ss_pred HHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECch
Confidence 44555555543 56778877642110 1124567887743222222345678999999999999999999999999
Q ss_pred HHHHHhhhh-ccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCe
Q psy12107 83 NCAVNLEQC-VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPT 157 (334)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t 157 (334)
++..+.... ...+ +..++|++++..|++|+.++...++.++..|+++++.+. +++..+++.|+++++|
T Consensus 280 ~~~~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt 352 (652)
T 1pg4_A 280 GYLVYAATTFKYVF-------DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352 (652)
T ss_dssp HHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhc-------CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence 987665322 2222 267899999999999999986667899999999999864 5899999999999999
Q ss_pred EEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCc
Q psy12107 158 ILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA 235 (334)
Q Consensus 158 ~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~ 235 (334)
+++++|++++.|.+... ....++++||.+++||+++++++.+++.+.+|..++++++.||+||++.+++.......+.
T Consensus 353 ~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 432 (652)
T 1pg4_A 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432 (652)
T ss_dssp EEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCB
T ss_pred EEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCc
Confidence 99999999999988654 3345789999999999999999999999999743468999999999986554332111001
Q ss_pred c------------------------ccCcccc--------ccccccCCccccccccC--CCCceecCceEEEecCCcEEE
Q psy12107 236 K------------------------LGSTGQL--------VMLGYLKNEEATKETVD--SEGWLHTGDVAYYDEDGYFYI 281 (334)
Q Consensus 236 ~------------------------~~~~G~~--------~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~~~ 281 (334)
. .+..|++ +++|||++++.+.+.+. .+|||+|||+|++|+||++++
T Consensus 433 ~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i 512 (652)
T 1pg4_A 433 KAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWI 512 (652)
T ss_dssp CTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEE
T ss_pred cCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEE
Confidence 1 1222332 67889999998877653 378999999999999999999
Q ss_pred EccCCceEEEcCEEee------------------------------------------------------------eeee
Q psy12107 282 VDRTKELIKVKGNQVA------------------------------------------------------------PYKK 301 (334)
Q Consensus 282 ~GR~~d~i~~~G~~i~------------------------------------------------------------~~~~ 301 (334)
+||.||+||++|++|+ ++++
T Consensus 513 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 592 (652)
T 1pg4_A 513 TGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLAT 592 (652)
T ss_dssp EEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGC
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcC
Confidence 9999999999999999 5566
Q ss_pred ccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 302 LAGGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 302 ~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
|.. |+++++||+|++|||+|++|++.+.+.
T Consensus 593 P~~-i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 593 PDV-LHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp CSE-EEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CeE-EEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 776 999999999999999999999987653
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.7e-52 Score=390.49 Aligned_cols=308 Identities=19% Similarity=0.298 Sum_probs=206.8
Q ss_pred HHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCC-CCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHh
Q psy12107 10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNL 88 (334)
Q Consensus 10 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~ 88 (334)
.+..+....+..+.+++++... ....+.++..... ...+....+++|+++|+|||||||.||||+++|+++..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~ 220 (544)
T 3o83_A 145 FIDSLHDVNLSPEIILMLNHQA----TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV 220 (544)
T ss_dssp HHHHHHHTTCCCSEEEEETCCT----TSEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHH
T ss_pred HHHHHhhcccCcceEEEecCCc----cccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHH
Confidence 3344445556666666665432 2234555542111 1111245678999999999999999999999999999887
Q ss_pred hhhccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHH
Q psy12107 89 EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL 167 (334)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~ 167 (334)
......+ ...++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.|+++++|+++++|+++.
T Consensus 221 ~~~~~~~-------~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 293 (544)
T 3o83_A 221 RASAEIC-------GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293 (544)
T ss_dssp HHHHHHT-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred HHHHHHh-------CCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHH
Confidence 7665544 2678999999999999988764 4688899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC--------------C-
Q psy12107 168 FLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA--------------I- 232 (334)
Q Consensus 168 ~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~--------------~- 232 (334)
.|++.......++++||.+++||+++++++.+++.+.++. ++++.||+||++......... .
T Consensus 294 ~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~ 370 (544)
T 3o83_A 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC---KLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDD 370 (544)
T ss_dssp HHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS---EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTC
T ss_pred HHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC---cEEeeeccccccceeecCCCchhhccCCCceecCCCc
Confidence 9988776667788999999999999999999999999964 899999999987543321110 0
Q ss_pred ---------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107 233 ---------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 233 ---------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~ 297 (334)
.+...|..|++ ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.||+||++|++|+
T Consensus 371 ~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~ 450 (544)
T 3o83_A 371 EIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIA 450 (544)
T ss_dssp EEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------
T ss_pred EEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEEC
Confidence 11223444554 788999999999999988999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------------eeeeccCcEEEeecCCCCCCchh
Q psy12107 298 ---------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKV 320 (334)
Q Consensus 298 ---------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi 320 (334)
++++|.. |+++++||+|++|||
T Consensus 451 p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~-i~~v~~lP~t~~GKi 529 (544)
T 3o83_A 451 SEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQ-IKLIESLPLTAVGKV 529 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcE-EEEeccCCCCCCCCC
Confidence 4556776 999999999999999
Q ss_pred hHHHHhhhhcCC
Q psy12107 321 LRNELKVFGTNP 332 (334)
Q Consensus 321 ~r~~l~~~~~~~ 332 (334)
+|++|++++.+.
T Consensus 530 ~r~~L~~~~~~~ 541 (544)
T 3o83_A 530 DKKQLRSILNTS 541 (544)
T ss_dssp ------------
T ss_pred cHHHHHHHHhhc
Confidence 999999998654
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7.8e-52 Score=388.71 Aligned_cols=314 Identities=29% Similarity=0.456 Sum_probs=235.4
Q ss_pred CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107 3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
.++++.+.+.++...++.++.++++++.. +.+...|++++...... ...+++++++|+|||||||.||||+++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~ 199 (541)
T 1v25_A 125 FDPNLLPLVEAIRGELKTVQHFVVMDEKA--PEGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHR 199 (541)
T ss_dssp ECGGGHHHHHHHGGGCSSCCEEEESSSCC--CTTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHH
T ss_pred EChhHHHHHHHHHhhCCCccEEEEecCCC--CcccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehH
Confidence 35566777777777788888888776432 11345677776432221 34567899999999999999999999999
Q ss_pred HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCCeEEee
Q psy12107 83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKPTILFV 161 (334)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~ 161 (334)
++..+......... ....++|++++.+|++|.+++.. ++.++..|+++++.+. +++..+++.|+++++|++++
T Consensus 200 ~l~~~~~~~~~~~~-----~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~ 273 (541)
T 1v25_A 200 ALVLHSLAASLVDG-----TALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAG 273 (541)
T ss_dssp HHHHHHHHTTSTTT-----TCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhhhhhccc-----ccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEec
Confidence 99876554221110 12568899999999999999865 6778899999998864 79999999999999999999
Q ss_pred chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC----------
Q psy12107 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA---------- 231 (334)
Q Consensus 162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---------- 231 (334)
+|+++..|++.......++++||.+++||+++++++.+++ +.++ ++++|.||+||++.+++.....
T Consensus 274 ~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 349 (541)
T 1v25_A 274 VPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEE 349 (541)
T ss_dssp CHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHH
T ss_pred chHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccc
Confidence 9999999987544334567899999999999999999999 6665 4899999999998655432111
Q ss_pred --------------------CCC---cc-c-cCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEE
Q psy12107 232 --------------------IPE---AK-L-GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFY 280 (334)
Q Consensus 232 --------------------~~~---~~-~-~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~ 280 (334)
+.. .. . +..|++ ++.||+++|+.|.+.|.++|||+|||+|++|+||+++
T Consensus 350 ~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~ 429 (541)
T 1v25_A 350 KLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVE 429 (541)
T ss_dssp HHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEE
T ss_pred cccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEE
Confidence 000 00 0 124554 7889999999999999889999999999999999999
Q ss_pred EEccCCceEEEcCEEee---------------------------------------------------------eeeecc
Q psy12107 281 IVDRTKELIKVKGNQVA---------------------------------------------------------PYKKLA 303 (334)
Q Consensus 281 ~~GR~~d~i~~~G~~i~---------------------------------------------------------~~~~~~ 303 (334)
++||.||+||++|++|+ .+++|.
T Consensus 430 ~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~ 509 (541)
T 1v25_A 430 IKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPD 509 (541)
T ss_dssp EEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCS
T ss_pred EeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCc
Confidence 99999999999999999 344566
Q ss_pred CcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 304 GGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
. |+++++||+|++|||+|++|++.+.+.
T Consensus 510 ~-i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 510 A-YVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp B-C--------------CCTTHHHHSTTS
T ss_pred E-EEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 6 999999999999999999999987653
No 11
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.3e-52 Score=390.14 Aligned_cols=313 Identities=30% Similarity=0.500 Sum_probs=217.5
Q ss_pred cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCC-CCEEEEecCCCCCCCchhhhhcch
Q psy12107 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISP-NDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
+.++.+.+.++....+ ++.+++++. ....+++++.......+.....+ +|+++|+|||||||.||||+++|+
T Consensus 131 ~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~ 203 (549)
T 3g7s_A 131 HSMLYENFKPVLEKTG-VERVFVVGG------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHF 203 (549)
T ss_dssp EGGGHHHHHHHHTTSC-CCEEEEETC------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHH
T ss_pred ChHHHHHHHHHHhhCC-CcEEEEeCC------CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHH
Confidence 4455666666666555 566666653 34577777732211122223344 899999999999999999999999
Q ss_pred HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeec
Q psy12107 83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV 162 (334)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~ 162 (334)
++..+.......+ ...+.+++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|+++++
T Consensus 204 ~l~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 275 (549)
T 3g7s_A 204 NLAANALQLAVAT-------GLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAV 275 (549)
T ss_dssp HHHHHHHHHHHHH-------CCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHc-------CCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeC
Confidence 9998876655443 2678899999999999999887 7888999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCc--cccccceeeeecCCCCCHHHHHHHHHH----hccCCCceeeccCCCCCCCcccccccCC----
Q psy12107 163 PSLLLFLASHPAVTP--EHLASIREVTCGAAPATKSLIDKFKQK----VQREDITIRQGYGMTETSPCTLYTRFAI---- 232 (334)
Q Consensus 163 p~~l~~l~~~~~~~~--~~~~~lr~v~~~G~~l~~~~~~~~~~~----~~~~~~~i~~~YG~tE~g~~~~~~~~~~---- 232 (334)
|+++..|++...... .++++||.+++||+++++++.+++.+. ++.++++++|.||+||++.+++......
T Consensus 276 P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 355 (549)
T 3g7s_A 276 PPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKS 355 (549)
T ss_dssp HHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGT
T ss_pred CHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcC
Confidence 999999987543222 578899999999999999999999988 6633578999999999987655432111
Q ss_pred --------------------CCccccCcccc------ccccccCCccccccccC--CCC--ceecCceEEEecCCcEEEE
Q psy12107 233 --------------------PEAKLGSTGQL------VMLGYLKNEEATKETVD--SEG--WLHTGDVAYYDEDGYFYIV 282 (334)
Q Consensus 233 --------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~~~~~ 282 (334)
.+...|..|++ ++.||+++|+.|.+.|. .+| ||+|||+|++|+||+++++
T Consensus 356 ~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~ 435 (549)
T 3g7s_A 356 TTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQ 435 (549)
T ss_dssp TSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEE
T ss_pred CCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEe
Confidence 01122344544 78999999999999883 567 9999999999999999999
Q ss_pred ccCCceEEEcCEEee-----------------------------------------------------------eeeecc
Q psy12107 283 DRTKELIKVKGNQVA-----------------------------------------------------------PYKKLA 303 (334)
Q Consensus 283 GR~~d~i~~~G~~i~-----------------------------------------------------------~~~~~~ 303 (334)
||.||+||++|++|+ ++++|+
T Consensus 436 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 515 (549)
T 3g7s_A 436 DRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVR 515 (549)
T ss_dssp EEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----C
T ss_pred ccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccce
Confidence 999999999999999 666777
Q ss_pred CcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 304 GGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
. |+++++||+|++|||+|++|++...+.
T Consensus 516 ~-i~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 516 E-VEFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp C-CCEEEECC-------------------
T ss_pred E-EEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence 7 999999999999999999999987653
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.3e-50 Score=382.24 Aligned_cols=312 Identities=18% Similarity=0.301 Sum_probs=248.1
Q ss_pred CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107 3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
.+.++.+.+.++...+|.++.++++++.. ..+...|++++.......+.....++|+++|+|||||||.||||+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~ 229 (570)
T 3c5e_A 152 AGDEVIQEVDTVASECPSLRIKLLVSEKS--CDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229 (570)
T ss_dssp EETTTHHHHHHHGGGCTTCCEEEEESSSC--CTTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH
T ss_pred echHHHHHHHHHhhcCCceeEEEEecccC--ccccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH
Confidence 34556677777777888888888876422 1245678887732222222235678999999999999999999999999
Q ss_pred HHHH--HhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHHHHcCCeE
Q psy12107 83 NCAV--NLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTI 158 (334)
Q Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i~~~~~t~ 158 (334)
++. ..... ..+ ...++|++++..|++|.+++...++.++..|+++++.+ .+++..+++.|+++++|+
T Consensus 230 -~~~~~~~~~~-~~~-------~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 230 -SLGLKAKMDA-GWT-------GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp -HHHHHHHHHT-TTT-------SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred -HHHhhhhhhh-hhc-------CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 444 22222 222 26788999999999999998766788899999999876 689999999999999999
Q ss_pred EeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC------
Q psy12107 159 LFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI------ 232 (334)
Q Consensus 159 l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~------ 232 (334)
++++|+++..|.+.. ....++++||.+++||+++++++.+++.+.++. +++|.||+||++.+++......
T Consensus 301 ~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~---~i~~~YG~TE~~~~~~~~~~~~~~~~~v 376 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQTGL---DIRESYGQTETGLTCMVSKTMKIKPGYM 376 (570)
T ss_dssp EEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC---CCEEEEEETTTEEEEECCTTSCCCTTCC
T ss_pred EeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHhCC---chhhccchhhcccceecCcccccCCCcc
Confidence 999999999998763 344568899999999999999999999999864 7999999999986544322110
Q ss_pred ----------------CCccccCccc-----------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccC
Q psy12107 233 ----------------PEAKLGSTGQ-----------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT 285 (334)
Q Consensus 233 ----------------~~~~~~~~G~-----------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~ 285 (334)
.+...|..|+ .++.||+++|+.|.+.| .++||+|||+|++|+||+++++||.
T Consensus 377 G~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~ 455 (570)
T 3c5e_A 377 GTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRA 455 (570)
T ss_dssp CEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred cccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecC
Confidence 0112233333 35679999999999999 5899999999999999999999999
Q ss_pred CceEEEcCEEee--------------------------------------------------------------eeeecc
Q psy12107 286 KELIKVKGNQVA--------------------------------------------------------------PYKKLA 303 (334)
Q Consensus 286 ~d~i~~~G~~i~--------------------------------------------------------------~~~~~~ 303 (334)
||+||++|++|+ ++++|+
T Consensus 456 dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 535 (570)
T 3c5e_A 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPR 535 (570)
T ss_dssp GGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCS
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCc
Confidence 999999999999 445566
Q ss_pred CcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107 304 GGVKFLETIPRNPAGKVLRNELKVFGTN 331 (334)
Q Consensus 304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~ 331 (334)
. |+++++||+|++|||+|++|++.+.+
T Consensus 536 ~-i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 536 K-IEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp E-EEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred E-EEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 6 99999999999999999999998743
No 13
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-50 Score=386.56 Aligned_cols=317 Identities=19% Similarity=0.297 Sum_probs=246.4
Q ss_pred hHHHHHHhhhCCCCceEEEEcCCCC--C---CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107 8 LEVGTKIGATLPNFRGTIVVGGEHD--K---SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 8 ~~~~~~~~~~~~~~~~ii~~~~~~~--~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
.+.+.++++.+|.++++++++.... . ......|++++.......+...++++|+++|+|||||||.||||+++|+
T Consensus 206 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~ 285 (663)
T 1ry2_A 206 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTA 285 (663)
T ss_dssp HHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSH
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchh
Confidence 4556677777788888888864321 0 1234567777743222222345678999999999999999999999999
Q ss_pred HHHHHhhhhc-cCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCe
Q psy12107 83 NCAVNLEQCV-HPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPT 157 (334)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t 157 (334)
++..+..... ..+ +..++|++++..|++|+.+....++.++..|+++++.+. +++..+++.|+++++|
T Consensus 286 ~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt 358 (663)
T 1ry2_A 286 GYLLGALLTMRYTF-------DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT 358 (663)
T ss_dssp HHHHHHHHHHHHHS-------CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhc-------CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence 9876553322 112 267889999999999999986667899999999998864 5899999999999999
Q ss_pred EEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc-CC--
Q psy12107 158 ILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF-AI-- 232 (334)
Q Consensus 158 ~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~-- 232 (334)
+++++|++++.|.+... ....++++||.+++||+++++++++++.+.+|..++++++.||+||++.+++.... ..
T Consensus 359 ~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 438 (663)
T 1ry2_A 359 QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTP 438 (663)
T ss_dssp EEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCC
T ss_pred EEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcc
Confidence 99999999999987654 23567899999999999999999999999997334689999999999865443221 00
Q ss_pred -------------------C-C---ccc-cCcccc--------ccccccCCccccccccCC--CCceecCceEEEecCCc
Q psy12107 233 -------------------P-E---AKL-GSTGQL--------VMLGYLKNEEATKETVDS--EGWLHTGDVAYYDEDGY 278 (334)
Q Consensus 233 -------------------~-~---~~~-~~~G~~--------~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~dg~ 278 (334)
. . ... +..|++ ++.|||++++.+.+.+.. +|||+|||+|++|+||+
T Consensus 439 ~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~ 518 (663)
T 1ry2_A 439 MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGY 518 (663)
T ss_dssp CCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCC
T ss_pred cCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCC
Confidence 0 0 001 233432 678999999988887643 78999999999999999
Q ss_pred EEEEccCCceEEEcCEEee-----------------------------------------e---e---------------
Q psy12107 279 FYIVDRTKELIKVKGNQVA-----------------------------------------P---Y--------------- 299 (334)
Q Consensus 279 ~~~~GR~~d~i~~~G~~i~-----------------------------------------~---~--------------- 299 (334)
++++||.||+||++|++|+ . .
T Consensus 519 l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~ 598 (663)
T 1ry2_A 519 IWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFT 598 (663)
T ss_dssp EEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHH
T ss_pred EEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHH
Confidence 9999999999999999999 1 1
Q ss_pred --------eeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 300 --------KKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 300 --------~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
++|.. |+++++||+|++|||+|++|++++.+.
T Consensus 599 l~~~L~~~~~P~~-i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 599 VRKDIGPFAAPKL-IILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp HHHHTCTTTSCSE-EEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHhCCCCcCCeE-EEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 12333 999999999999999999999987653
No 14
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.9e-50 Score=376.49 Aligned_cols=313 Identities=23% Similarity=0.333 Sum_probs=229.9
Q ss_pred cchhhHHHHHHhhhCCCC-ceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107 4 IPQLLEVGTKIGATLPNF-RGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
+.++.+.+.++...++.+ +.+++++...........|++++.......+....+++|+++|+|||||||.||||+++|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~ 206 (529)
T 2v7b_A 127 SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHA 206 (529)
T ss_dssp EGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHH
T ss_pred chhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhh
Confidence 344555666665555555 5666655322111113467777642222222245678999999999999999999999999
Q ss_pred HH-HHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEc-CCCCHHHHHHHHHHcCCeEEe
Q psy12107 83 NC-AVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILF 160 (334)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 160 (334)
++ ..........+ ...++|++++.+|++|.+++...++.++..|+++++. +.++++.+++.|+++++|+++
T Consensus 207 ~l~~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 279 (529)
T 2v7b_A 207 NLYWTAELYAKPIL-------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFY 279 (529)
T ss_dssp HHHHHHHHTCCCCC-------CCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHhhhcc-------CCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEE
Confidence 98 44444332222 2678899999999999999877677889999999987 568999999999999999999
Q ss_pred echHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC--------
Q psy12107 161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-------- 232 (334)
Q Consensus 161 ~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-------- 232 (334)
++|+++..|++..........+||.+++||+++++++.+++.+.++. ++++.||+||++.+........
T Consensus 280 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~ 356 (529)
T 2v7b_A 280 GVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC---EILDGIGSTEMLHIFLSNRAGAVEYGTTGR 356 (529)
T ss_dssp ECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC---CEEEEEECTTTSSEEEECCTTCCCTTSCCE
T ss_pred ecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC---ceeeeEchhhcCceeeccccCCCccCCccc
Confidence 99999999988765443323489999999999999999999999964 7999999999965443221110
Q ss_pred --------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEc
Q psy12107 233 --------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292 (334)
Q Consensus 233 --------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~ 292 (334)
.+...|..|++ ++.||+++++.+...| .++||+|||+|++++||+++++||.||+||++
T Consensus 357 p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~ 435 (529)
T 2v7b_A 357 PVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS 435 (529)
T ss_dssp ECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEEC
Confidence 01122344544 6789999999999999 48999999999999999999999999999999
Q ss_pred CEEee-----------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107 293 GNQVA-----------------------------------------------------------PYKKLAGGVKFLETIP 313 (334)
Q Consensus 293 G~~i~-----------------------------------------------------------~~~~~~~~i~~v~~lP 313 (334)
|++|+ ++++|.. |+++++||
T Consensus 436 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP 514 (529)
T 2v7b_A 436 GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRD-IVFVDDLP 514 (529)
T ss_dssp --CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSE-EEEESCCC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeE-EEEeccCC
Confidence 99999 3445666 99999999
Q ss_pred CCCCchhhHHHHhhh
Q psy12107 314 RNPAGKVLRNELKVF 328 (334)
Q Consensus 314 ~t~~GKi~r~~l~~~ 328 (334)
+|++|||+|++|+++
T Consensus 515 ~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 515 KTATGKIQRFKLREQ 529 (529)
T ss_dssp BCTTSCBCHHHHHC-
T ss_pred CCCccchhHHhHhhC
Confidence 999999999999873
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.7e-50 Score=383.82 Aligned_cols=304 Identities=20% Similarity=0.298 Sum_probs=242.8
Q ss_pred HHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhh
Q psy12107 11 GTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90 (334)
Q Consensus 11 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~ 90 (334)
+..+....+..+.+.+.+.. ....+.+...............++|+++|+|||||||.||||+++|+++.++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~ 215 (617)
T 3rg2_A 141 LNTFVTEHSSIRVVQLLNDS-----GEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR 215 (617)
T ss_dssp HHHHHHHSTTCCEEEEETCC-----STTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHH
T ss_pred HHHHhhcCCccceeeecccc-----cccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHH
Confidence 33444455666666655432 2234555553222222234567899999999999999999999999999888776
Q ss_pred hccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHH
Q psy12107 91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL 169 (334)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l 169 (334)
....+ ...+++++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|
T Consensus 216 ~~~~~-------~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 216 SVEIC-------QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp HHHHH-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred HHHhc-------CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 65543 2678899999999999888764 478889999999999889999999999999999999999999998
Q ss_pred hcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC----------------
Q psy12107 170 ASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA---------------- 231 (334)
Q Consensus 170 ~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---------------- 231 (334)
.+.... ....+++||.+++||+++++++.+++.+.+++ +++|.||+||++...+.....
T Consensus 289 ~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~---~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~ 365 (617)
T 3rg2_A 289 LQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC---QLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDD 365 (617)
T ss_dssp HHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS---EEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTC
T ss_pred HHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC---cEEEEeccCcceeecccCCCcccccccCCCccCCCCc
Confidence 764322 23478899999999999999999999999864 899999999987543321110
Q ss_pred --------CCCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107 232 --------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 232 --------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~ 297 (334)
..+...|..|++ +++||+++|+.|.+.|..++||+|||+|++++||+++++||.||+||++|++|+
T Consensus 366 ~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~ 445 (617)
T 3rg2_A 366 EVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIA 445 (617)
T ss_dssp EEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEE
T ss_pred eEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeC
Confidence 012233445554 789999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------eeeeccCcEEEeecCCCCCCchhh
Q psy12107 298 --------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVL 321 (334)
Q Consensus 298 --------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~ 321 (334)
.+++|.. +.++++||+|++||||
T Consensus 446 ~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~-~~~v~~lP~t~~GKid 524 (617)
T 3rg2_A 446 AEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDR-VECVDSLPLTAVGKVD 524 (617)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSE-EEECSCCCBCTTSSBC
T ss_pred HHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcE-EEEecccCCCCCCCCc
Confidence 4556666 9999999999999999
Q ss_pred HHHHhhhhc
Q psy12107 322 RNELKVFGT 330 (334)
Q Consensus 322 r~~l~~~~~ 330 (334)
|++|++.+.
T Consensus 525 R~~L~~~~~ 533 (617)
T 3rg2_A 525 KKQLRQWLA 533 (617)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998753
No 16
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.5e-50 Score=402.39 Aligned_cols=291 Identities=40% Similarity=0.629 Sum_probs=202.1
Q ss_pred CccchhhhhcCCCC---CCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEE
Q psy12107 36 NIFGFKQLVTSQPP---DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS 112 (334)
Q Consensus 36 ~~~~~~~ll~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (334)
+...|.++...... ..+....+++|+++|+|||||||.||||+++|+++..+........... ....+++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~---~~~~~~d~~l~ 275 (979)
T 3tsy_A 199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPN---LYFHSDDVILC 275 (979)
T ss_dssp TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCS---SCCCSSCEEEE
T ss_pred ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhccc---ccCCCCCEEEE
Confidence 45667776632111 1223456789999999999999999999999999988776544321110 12568899999
Q ss_pred ecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCC
Q psy12107 113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP 192 (334)
Q Consensus 113 ~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~ 192 (334)
.+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.+++||++
T Consensus 276 ~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp CSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred ECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence 99999999997778889999999999999999999999999999999999999999998876666788999999999999
Q ss_pred CCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc---C-------------------------CCCccccCcccc-
Q psy12107 193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---A-------------------------IPEAKLGSTGQL- 243 (334)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~-------------------------~~~~~~~~~G~~- 243 (334)
+++++.+++.+.|+ +++++|.||+||++.+++.... . ..+...+..|++
T Consensus 356 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~ 433 (979)
T 3tsy_A 356 LGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEIC 433 (979)
T ss_dssp CCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEE
T ss_pred CCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEE
Confidence 99999999999996 5689999999999865443210 0 011122334444
Q ss_pred -----ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------
Q psy12107 244 -----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------- 297 (334)
Q Consensus 244 -----~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------- 297 (334)
++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.||+||++|++|+
T Consensus 434 i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~ 513 (979)
T 3tsy_A 434 IRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA 513 (979)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------
T ss_pred EECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 788999999999999989999999999999999999999999999999999999
Q ss_pred ------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 298 ------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 298 ------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
.+++|.. ++++++||+|++|||+|++|++.+.+.
T Consensus 514 ~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~-i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 514 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINK-VFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeE-EEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 5666777 999999999999999999999987653
No 17
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.3e-50 Score=372.86 Aligned_cols=267 Identities=26% Similarity=0.425 Sum_probs=220.1
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++|+++|+|||||||.||||+++|+++.++.......+.. .....+++++.+|++|.+++...++.++..|
T Consensus 148 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G 222 (504)
T 1t5h_X 148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGL-----RHGRHNVVLGLMPLYHVVGFFAVLVAALALD 222 (504)
T ss_dssp CCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCC-----CSSTTCEEEECSCTTSHHHHTTTHHHHHHTT
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCC-----CCCCCceEEeecchhhcchHHHHHHHHHHcC
Confidence 34568999999999999999999999999998877665443310 0267899999999999999865578899999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107 134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~ 211 (334)
+++++.+.+++..+++.|+++++|+++++|+++..|.+... ....++++||.+++||+++++++.+++++.++. .
T Consensus 223 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~---~ 299 (504)
T 1t5h_X 223 GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG---E 299 (504)
T ss_dssp CEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS---E
T ss_pred ceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc---c
Confidence 99999999999999999999999999999999999987542 234578899999999999999999999999874 7
Q ss_pred eeeccCCCCCCCcccccccC-------------------C---CCccccCcccc-------ccccccCCccccccccCCC
Q psy12107 212 IRQGYGMTETSPCTLYTRFA-------------------I---PEAKLGSTGQL-------VMLGYLKNEEATKETVDSE 262 (334)
Q Consensus 212 i~~~YG~tE~g~~~~~~~~~-------------------~---~~~~~~~~G~~-------~~~gy~~~~~~~~~~~~~~ 262 (334)
++|.||+||++......... . .....|..|++ ++.||+++|+.|.+.| .+
T Consensus 300 ~~~~YG~TE~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~ 378 (504)
T 1t5h_X 300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QD 378 (504)
T ss_dssp EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ET
T ss_pred eeeeeccccccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cC
Confidence 99999999984222111000 0 11122334443 5679999999999999 68
Q ss_pred CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------- 297 (334)
Q Consensus 263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------- 297 (334)
|||+|||+|++++||+++++||.||+||++|++|+
T Consensus 379 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~ 458 (504)
T 1t5h_X 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458 (504)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCH
T ss_pred CccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCH
Confidence 99999999999999999999999999999999999
Q ss_pred -------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107 298 -------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT 330 (334)
Q Consensus 298 -------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~ 330 (334)
+|++|+. |+++++||+|++|||+|++|++.++
T Consensus 459 ~~l~~~~~~~~L~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 459 DALDTFCRSSELADFKRPKR-YFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHHHHTSSCCGGGSCSE-EEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHHHhhccCcccccceE-EEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 4556666 9999999999999999999999875
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-49 Score=371.47 Aligned_cols=268 Identities=22% Similarity=0.293 Sum_probs=225.4
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++|+++|+|||||||.||||+++|+++.+........+ ...++|++++.+|++|..++.. ++.++..|
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G 210 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-------NLQTGQVFLNQAPFSFDLSVMD-IYPSLVTG 210 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-------TCCSSCEEEECSCTTSGGGHHH-HHHHHHTT
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-------CCCCCCEEEEeCCccHhHHHHH-HHHHHhCC
Confidence 456789999999999999999999999999998876655543 2678899999999999999876 78899999
Q ss_pred cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107 134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210 (334)
Q Consensus 134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~ 210 (334)
+++++.+. +++..+++.|+++++|++.++|+++..++........++++||.+++||+++++++.+++.+.|+ ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~ 288 (512)
T 3fce_A 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP--KA 288 (512)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCT--TC
T ss_pred CEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCC--CC
Confidence 99999876 68999999999999999999999999999887777778999999999999999999999999996 56
Q ss_pred ceeeccCCCCCCCcccccccC---------------------------CCCccccCcccc------ccccccCCcccccc
Q psy12107 211 TIRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL------VMLGYLKNEEATKE 257 (334)
Q Consensus 211 ~i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~ 257 (334)
++++.||+||++.+++..... ......+..|++ ++.||+++|+.|.+
T Consensus 289 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 368 (512)
T 3fce_A 289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368 (512)
T ss_dssp EEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred EEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhh
Confidence 899999999998755422110 011123444554 78899999999998
Q ss_pred cc---CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107 258 TV---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------- 297 (334)
Q Consensus 258 ~~---~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------- 297 (334)
.| +.++||+|||+|++ +||+++++||.||+||++|++|+
T Consensus 369 ~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~ 447 (512)
T 3fce_A 369 AFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVP 447 (512)
T ss_dssp HEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEec
Confidence 87 45679999999999 89999999999999999999999
Q ss_pred ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107 298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK 333 (334)
Q Consensus 298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~ 333 (334)
+++.|.. ++++++||+|++|||+|++|++.+.+..
T Consensus 448 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 448 GEHSFEKEFKLTSAIKKELNERLPNYMIPRK-FMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp CSCCCSSHHHHHHHHHHHHHTTSCGGGSCSE-EEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred CCccccchhhhHHHHHHHHHhhCchhcCCeE-EEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 5556666 9999999999999999999999987654
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6.3e-50 Score=373.37 Aligned_cols=306 Identities=25% Similarity=0.424 Sum_probs=198.8
Q ss_pred cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc-CCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT-SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 82 (334)
+.+..+.+......++.++.++.+++.. ..+.++.. ......+.....++|+++|+|||||||.||||+++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~ 183 (509)
T 3ivr_A 110 GTDYRDIVAGVLPSLGGVKKAYAIGDGS------GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQG 183 (509)
T ss_dssp CSTTHHHHHHHGGGCSSCCEEEESSCCC------SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHH
T ss_pred CcchhhhHHhhhcccCCceEEEEcCCCC------cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehH
Confidence 4455555555666777777777776422 23333332 2222222346778999999999999999999999999
Q ss_pred HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeec
Q psy12107 83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV 162 (334)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~ 162 (334)
++..........+ ...++|++++.+|++|.+++...+...+..|+++ +...+++..+++.|+++++|+++++
T Consensus 184 ~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~t~~~~~ 255 (509)
T 3ivr_A 184 NLLIAQSSLVDAW-------RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV-IAAKFDPAQAARDIEAHKVTVMAEF 255 (509)
T ss_dssp HHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE-ECSSCCHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHhh-------CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEE-EecccCHHHHHHHHHHHCCcEEEec
Confidence 9988877665544 2678999999999999999887544445555544 4458899999999999999999999
Q ss_pred hHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC----------
Q psy12107 163 PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---------- 232 (334)
Q Consensus 163 p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------- 232 (334)
|+++..|++.. ....++++|.++.+|++ ++.+.+.+.++ +++++|.||+||++.+.+......
T Consensus 256 p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~G~p~~ 328 (509)
T 3ivr_A 256 APMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYRDRPKSAGRPLF 328 (509)
T ss_dssp TTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGGGSTTSCCEECT
T ss_pred HHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcC--CCeEEcccCccccccccccCccccCCCcccccCC
Confidence 99999998866 45678899999999987 88899999985 569999999999987554332111
Q ss_pred -----------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccC--CceEEEcC
Q psy12107 233 -----------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT--KELIKVKG 293 (334)
Q Consensus 233 -----------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~--~d~i~~~G 293 (334)
.+...|..|++ ++.||+++|+.|.+.| .+|||+|||+|++++||+++++||. +|+||++|
T Consensus 329 ~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G 407 (509)
T 3ivr_A 329 WRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGG 407 (509)
T ss_dssp TCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred CcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECC
Confidence 11223444554 7889999999999999 5899999999999999999999999 99999999
Q ss_pred EEee---------------------------------------------------------eeeeccCcEEEeecCCCCC
Q psy12107 294 NQVA---------------------------------------------------------PYKKLAGGVKFLETIPRNP 316 (334)
Q Consensus 294 ~~i~---------------------------------------------------------~~~~~~~~i~~v~~lP~t~ 316 (334)
++|+ ++++|.. |+++++||+|+
T Consensus 408 ~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP~t~ 486 (509)
T 3ivr_A 408 ENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKH-VVFVEALPKDA 486 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcE-EEEecCCCCCC
Confidence 9999 5667777 99999999999
Q ss_pred CchhhHHHHhhhhcCC
Q psy12107 317 AGKVLRNELKVFGTNP 332 (334)
Q Consensus 317 ~GKi~r~~l~~~~~~~ 332 (334)
+|||+|++||+.+.+.
T Consensus 487 ~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 487 KGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------
T ss_pred CCCccHHHHHHHHhhc
Confidence 9999999999998664
No 20
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.2e-49 Score=370.87 Aligned_cols=263 Identities=28% Similarity=0.416 Sum_probs=211.8
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
...+++|+++|+|||||||.||||+++|+++..........+ ...++|++++.+|++|..++...++.++..|
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-------QWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-------TCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-------CCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999999998877665544 2678899999999999999877688999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC---CccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107 134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV---TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~---~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~ 210 (334)
+++++.+.+++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++||+++++++.+++.+.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~--- 298 (505)
T 3nyq_A 223 GSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR--- 298 (505)
T ss_dssp CEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC---
T ss_pred CEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC---
Confidence 999999999999999999 88999999999999999874322 23457789999999999999999999999864
Q ss_pred ceeeccCCCCCCCcccccccCCC----------------------Ccc---ccCcccc------ccccccCCcccccccc
Q psy12107 211 TIRQGYGMTETSPCTLYTRFAIP----------------------EAK---LGSTGQL------VMLGYLKNEEATKETV 259 (334)
Q Consensus 211 ~i~~~YG~tE~g~~~~~~~~~~~----------------------~~~---~~~~G~~------~~~gy~~~~~~~~~~~ 259 (334)
+++|.||+||++..++....... +.. .+..|++ ++.||+++|+.|.+.|
T Consensus 299 ~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 378 (505)
T 3nyq_A 299 RVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF 378 (505)
T ss_dssp CCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTB
T ss_pred eeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhh
Confidence 79999999999865543222110 001 1344555 7889999999999999
Q ss_pred CCCCceecCceEEEecCCcEEEEccC-CceEEEcCEEee-----------------------------------------
Q psy12107 260 DSEGWLHTGDVAYYDEDGYFYIVDRT-KELIKVKGNQVA----------------------------------------- 297 (334)
Q Consensus 260 ~~~~~~~TGD~~~~~~dg~~~~~GR~-~d~i~~~G~~i~----------------------------------------- 297 (334)
..++||+|||+|++++||+++++||+ ||+||++|++|+
T Consensus 379 ~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~ 458 (505)
T 3nyq_A 379 TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA 458 (505)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT
T ss_pred cCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC
Confidence 88999999999999999999999998 599999999999
Q ss_pred -----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107 298 -----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF 328 (334)
Q Consensus 298 -----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~ 328 (334)
++++|.. |+++++||+|++|||+|++|++.
T Consensus 459 ~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 459 APPALGTLADHVAARLAPHKRPRV-VRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp SCCCHHHHHHHHHHHTCGGGSCSE-EEECSCCCC--------------
T ss_pred CCCCHHHHHHHHHhhCCCCcCccE-EEEECCCCCCCCcCeeHHhhccC
Confidence 6667777 99999999999999999999873
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.2e-49 Score=370.73 Aligned_cols=260 Identities=28% Similarity=0.434 Sum_probs=203.7
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM 134 (334)
Q Consensus 55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~ 134 (334)
..+++|+++|+|||||||.||+|+++|+++.++.......+ ...+++++++.+|++|.+++.. ++.++..|+
T Consensus 159 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~ 230 (501)
T 3ipl_A 159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-------GFDRDTNWLSVLPIYHISGLSV-LLRAVIEGF 230 (501)
T ss_dssp CCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-------CCCTTCEEEECSCTTSHHHHHH-HHHHHHHTC
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-------CCCccCEEEEeCcHHHHHHHHH-HHHHHHcCc
Confidence 45789999999999999999999999999988876655443 2678899999999999999987 788999999
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107 135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ 214 (334)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~ 214 (334)
++++.+.++++.+++.|+++++|+++++|+++..|.+....... +||.+++||+++++++.+++.+ ++ ++++|
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~-~~---~~~~~ 303 (501)
T 3ipl_A 231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQ-YN---LPIYN 303 (501)
T ss_dssp EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHH-TT---CCEEE
T ss_pred eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHH-hC---CCEec
Confidence 99999999999999999999999999999999999876543222 8999999999999999999987 44 48999
Q ss_pred ccCCCCCCCcccccccCCC-------------------CccccCcccc------ccccccCCccccccccCCCCceecCc
Q psy12107 215 GYGMTETSPCTLYTRFAIP-------------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269 (334)
Q Consensus 215 ~YG~tE~g~~~~~~~~~~~-------------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD 269 (334)
.||+||++..+........ ....+..|++ +++||+++++.+.. + .+|||+|||
T Consensus 304 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGD 381 (501)
T 3ipl_A 304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGD 381 (501)
T ss_dssp EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEE
T ss_pred cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCC
Confidence 9999998864432211100 0012223443 78999999998887 5 689999999
Q ss_pred eEEEecCCcEEEEccCCceEEEcCEEee----------------------------------------------------
Q psy12107 270 VAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------------- 297 (334)
Q Consensus 270 ~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------------- 297 (334)
+|++++||+++++||.||+||++|++|+
T Consensus 382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~ 461 (501)
T 3ipl_A 382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSK 461 (501)
T ss_dssp EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999
Q ss_pred ---eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107 298 ---PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP 332 (334)
Q Consensus 298 ---~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 332 (334)
++++|.. |+++++||+|++|||+|++||+..++.
T Consensus 462 ~L~~~~~P~~-i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 462 HLAKYKVPKH-FEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HSCGGGSCSE-EEECSSCC-------------------
T ss_pred hCccccCCCE-EEEecccCCCCCCCEeHHHHhhccccc
Confidence 6667777 999999999999999999999987654
No 22
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=8.4e-50 Score=355.55 Aligned_cols=257 Identities=17% Similarity=0.187 Sum_probs=210.9
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
.+|+|||+|||||||.||||+++|+++.++.......+ ...++|++++.+|++|.+++.. ++.++..|++++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~ 107 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-------SLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELT 107 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEE
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-------CCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEE
Confidence 47899999999999999999999999998877665544 3678999999999999999877 677788888888
Q ss_pred EcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccC
Q psy12107 138 TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYG 217 (334)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG 217 (334)
+.++. ...++.|+++++|+++++|+++..|++... ...++++||.+++||+++++++.+++++. +++++|.||
T Consensus 108 ~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~----~~~~~~~YG 180 (358)
T 4gs5_A 108 VTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL----AMPVYQSYG 180 (358)
T ss_dssp EECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC----SSCEEEEEE
T ss_pred ecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc----CceEEeccc
Confidence 77642 234678899999999999999999988765 45678999999999999999999999863 458999999
Q ss_pred CCCCCCcccccccCCCCccccCcccc---ccccccCCcccccc-ccCCCCceecCceEEEecCCcEEEEccCCceEEEcC
Q psy12107 218 MTETSPCTLYTRFAIPEAKLGSTGQL---VMLGYLKNEEATKE-TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293 (334)
Q Consensus 218 ~tE~g~~~~~~~~~~~~~~~~~~G~~---~~~gy~~~~~~~~~-~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G 293 (334)
+||++..++....... ..+++|.+ +..+|.++++.... .+..++||+|||+|++|+|| +.++||.||+||++|
T Consensus 181 ~TEt~~~~~~~~~~~~--~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G 257 (358)
T 4gs5_A 181 MTETVSHVALKALNGP--EASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGG 257 (358)
T ss_dssp CGGGSSEEEEEECSST--TCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETT
T ss_pred cccccceeeccccccc--ccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECC
Confidence 9999876665544433 33444433 55677766665433 34578999999999999988 667799999999999
Q ss_pred EEee------------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107 294 NQVA------------------------------------------------------------PYKKLAGGVKFLETIP 313 (334)
Q Consensus 294 ~~i~------------------------------------------------------------~~~~~~~~i~~v~~lP 313 (334)
++|+ .|++|+. |.++++||
T Consensus 258 ~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP 336 (358)
T 4gs5_A 258 VKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKH-IYFAKAFA 336 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSC-EEEESSCC
T ss_pred EEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceE-EEEECCcC
Confidence 9999 6677887 99999999
Q ss_pred CCCCchhhHHHHhhhhcCCC
Q psy12107 314 RNPAGKVLRNELKVFGTNPK 333 (334)
Q Consensus 314 ~t~~GKi~r~~l~~~~~~~~ 333 (334)
+|++|||+|++|++.+++..
T Consensus 337 ~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 337 KTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp BCTTSCBCHHHHHHHTC---
T ss_pred CCCCCChhHHHHHHHhhhhc
Confidence 99999999999999987754
No 23
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.4e-49 Score=367.79 Aligned_cols=283 Identities=20% Similarity=0.244 Sum_probs=233.2
Q ss_pred ccchhhhhcCC-CCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecc
Q psy12107 37 IFGFKQLVTSQ-PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115 (334)
Q Consensus 37 ~~~~~~ll~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 115 (334)
...+++++... ..........++|+++|+|||||||.||+|+++|+++.+........+ ....++++++.+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~p 192 (511)
T 3e7w_A 120 TVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-------PVSGGKIFLNQAP 192 (511)
T ss_dssp EEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-------TTTTTCEEEECSC
T ss_pred eecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-------CCCccceEEEeCC
Confidence 44566665321 111222346789999999999999999999999999988876655443 2678899999999
Q ss_pred hhhhhHHHHHHHHHHHhCcEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCC
Q psy12107 116 FFHIYGFNGILNVVMMYGMHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP 192 (334)
Q Consensus 116 ~~~~~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~ 192 (334)
++|..++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|+++..++.........++++|.+++||++
T Consensus 193 ~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 193 FSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp TTSTHHHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ccHHHHHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 999999765 7889999999999875 689999999999999999999999999998877777788999999999999
Q ss_pred CCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC---------------------------CCCccccCcccc--
Q psy12107 193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL-- 243 (334)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~-- 243 (334)
+++++.+++.+.|+ ++++++.||+||++.+++..... ..+...+..|++
T Consensus 272 l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v 349 (511)
T 3e7w_A 272 LPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVI 349 (511)
T ss_dssp CCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEE
Confidence 99999999999996 56899999999998655421110 011123444554
Q ss_pred ----ccccccCCccccccccCC-CC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------
Q psy12107 244 ----VMLGYLKNEEATKETVDS-EG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------- 297 (334)
Q Consensus 244 ----~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------- 297 (334)
++.||+++|+.|.+.|.. +| ||+|||+|++ +||+++++||.||+||++|++|+
T Consensus 350 ~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 428 (511)
T 3e7w_A 350 AGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVV 428 (511)
T ss_dssp ESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred ecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence 788999999999998832 22 7999999999 69999999999999999999999
Q ss_pred ------------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107 298 ------------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN 331 (334)
Q Consensus 298 ------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~ 331 (334)
.+++|.. ++++++||+|++|||+|++|++.+.+
T Consensus 429 v~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 429 IPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK-FIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp EEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSE-EEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCee-EEEeccCCCCCCcCccHHHHHhHHhh
Confidence 5566676 99999999999999999999998754
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=7.1e-49 Score=373.13 Aligned_cols=263 Identities=20% Similarity=0.257 Sum_probs=217.5
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
...+++|+++|+|||||||.||||+++|+++.+.... ...+ ...++++++...|++|..++.. ++.++..|
T Consensus 159 ~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G 229 (620)
T 4dg8_A 159 PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-------AFAPQMRFLVNSPLSFDAATLE-IWGALLNG 229 (620)
T ss_dssp CCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-------TTCTTCEEEECSCTTSTHHHHH-HHHHHTTT
T ss_pred CCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-------CCCCCCEEEEECccCHHHHHHH-HHHHHhcC
Confidence 3456899999999999999999999999998776543 1111 2678999999999999999876 78899999
Q ss_pred cEEEEcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107 134 MHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211 (334)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~ 211 (334)
+++++.+ .+++..+++.|+++++|+++++|+++..|.+. ....+++||.+++||+++++++.+++.+.++ +++
T Consensus 230 ~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~ 304 (620)
T 4dg8_A 230 GCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL---DPDCLGGLRQLLTGGDILSVPHVRRALLRHP--RLH 304 (620)
T ss_dssp CEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH---CGGGGTTCSEEEEESSCCCHHHHHHHHHHCT--TCE
T ss_pred CEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc---ChhhCCCccEEEEEeCcCCHHHHHHHHHhCC--CeE
Confidence 9999864 58999999999999999999999999999864 3456889999999999999999999888876 678
Q ss_pred eeeccCCCCCCCcccccccCC--------------------------CC-ccccCcccc------ccccccCCccccccc
Q psy12107 212 IRQGYGMTETSPCTLYTRFAI--------------------------PE-AKLGSTGQL------VMLGYLKNEEATKET 258 (334)
Q Consensus 212 i~~~YG~tE~g~~~~~~~~~~--------------------------~~-~~~~~~G~~------~~~gy~~~~~~~~~~ 258 (334)
++|.||+||++.+++...... .+ ...|..|++ +++||+++|+.|++.
T Consensus 305 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~ 384 (620)
T 4dg8_A 305 LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRAS 384 (620)
T ss_dssp EEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHH
T ss_pred EEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhh
Confidence 999999999986554221100 00 223445555 789999999999999
Q ss_pred cCCC-------CceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107 259 VDSE-------GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------- 297 (334)
Q Consensus 259 ~~~~-------~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------- 297 (334)
|..+ +||+|||+|++++||+++++||.||+||++|++|+
T Consensus 385 f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~ 464 (620)
T 4dg8_A 385 FVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAW 464 (620)
T ss_dssp EEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEE
T ss_pred hccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEE
Confidence 8543 79999999999999999999999999999999999
Q ss_pred ----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107 298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN 331 (334)
Q Consensus 298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~ 331 (334)
.|++|.. ++++++||+|++|||||++|++.+.+
T Consensus 465 ~~~~~~~~~~l~~~Lp~y~~P~~-~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 465 TGKADASPQALLRQLPTWQRPHA-CVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EECTTCCCHHHHHHSCGGGSCSE-EEECSSCCCC----CCHHHHHHHTCS
T ss_pred ecChHHHHHHHHHhChhhcCCcE-EEEECcCCCCcccCHhHHHHhhcccc
Confidence 5667777 99999999999999999999987654
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.2e-48 Score=365.88 Aligned_cols=271 Identities=21% Similarity=0.274 Sum_probs=219.0
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
...+++|+++|+|||||||.||||+++|+++.+........... .....+++++..|++|..+... ++.++..|
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G 213 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-----DVPKQPQMLAQPPYSFDLSVMY-WAPTLALG 213 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-----CCCSSCEEECCSCTTSGGGHHH-HHHHHHTT
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-----CCCCCCeEEecCCccHHHHHHH-HHHHHhcC
Confidence 45678999999999999999999999999998776654433111 2567889999999999888765 78889999
Q ss_pred cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107 134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210 (334)
Q Consensus 134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~ 210 (334)
+++++.+. .++..+++.|+++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++ ++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~--~~ 291 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFP--SA 291 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCT--TC
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCC--Cc
Confidence 99998876 38999999999999999999999999998877766778899999999999999999999999996 56
Q ss_pred ceeeccCCCCCCCcccccccC---------------------------CCCccccCcccc------ccccccCCcccccc
Q psy12107 211 TIRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL------VMLGYLKNEEATKE 257 (334)
Q Consensus 211 ~i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~ 257 (334)
++++.||+||++.+++..... ..+...+..|++ ++.||+++|+.|.+
T Consensus 292 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 371 (521)
T 3l8c_A 292 KIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAE 371 (521)
T ss_dssp EEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred eEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhc
Confidence 899999999998755421110 011223444554 78899999999998
Q ss_pred cc---CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107 258 TV---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------- 297 (334)
Q Consensus 258 ~~---~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------- 297 (334)
.| +.++||+|||+|++|+||+++++||.||+||++|++|+
T Consensus 372 ~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv 451 (521)
T 3l8c_A 372 AFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIV 451 (521)
T ss_dssp HEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEE
T ss_pred cCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEE
Confidence 87 56789999999999999999999999999999999999
Q ss_pred ----------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107 298 ----------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK 333 (334)
Q Consensus 298 ----------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~ 333 (334)
++++|.. |.++++||+|++|||+|++|++.+.+..
T Consensus 452 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 452 VKDGVKERFDRELELTKAIKASVKDHMMSYMMPSK-FLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp ECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSE-EEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred ecCccccccccchhhHHHHHHHHHhhCccccCCeE-EEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 3455666 9999999999999999999999987654
No 26
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.3e-48 Score=367.35 Aligned_cols=261 Identities=25% Similarity=0.339 Sum_probs=178.2
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++|+++|+|||||||.||||+++|+++.+...... .. ...+++++++.+|++|..+... ++.++..|
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G 279 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD-YA-------GFGPDEVFLQCSPVSWDAFGLE-LFGALLFG 279 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSCC-SS-------CCSTTCEEEECSCTTSSTHHHH-HHHHHTTT
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhhh-hc-------CCCCCCEEEEecCccHHHHHHH-HHHHHhcC
Confidence 456789999999999999999999999999876654321 11 2678899999999988766554 68889999
Q ss_pred cEEEEcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107 134 MHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211 (334)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~ 211 (334)
+++++.+ .+++..+++.|+++++|++.++|+++..|++.. ...+++||.+++||+++++++.+++.+.++ +++
T Consensus 280 ~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~--~~~ 354 (570)
T 4gr5_A 280 ARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV---PEAFEGVRYAITGGEPASVPHVAKARRDHP--ALR 354 (570)
T ss_dssp CEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCT--TCE
T ss_pred CEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc---hhhCCCceEEEEecccCCHHHHHHHHHhCC--CcE
Confidence 9999876 478999999999999999999999999998754 346889999999999999999999999986 568
Q ss_pred eeeccCCCCCCCcccccccCC--------------------------CCccccCcccc------ccccccCCcccccccc
Q psy12107 212 IRQGYGMTETSPCTLYTRFAI--------------------------PEAKLGSTGQL------VMLGYLKNEEATKETV 259 (334)
Q Consensus 212 i~~~YG~tE~g~~~~~~~~~~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~ 259 (334)
+++.||+||++.+.+...... .+...|..|++ ++.||+++|+.|.+.|
T Consensus 355 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f 434 (570)
T 4gr5_A 355 LGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434 (570)
T ss_dssp EEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred EEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhccc
Confidence 999999999986554321100 01122334444 7889999999999888
Q ss_pred CCC--------CceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107 260 DSE--------GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------- 297 (334)
Q Consensus 260 ~~~--------~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------- 297 (334)
..+ +||+|||+|++|+||+++++||+||+||++|++|+
T Consensus 435 ~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~ 514 (570)
T 4gr5_A 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAY 514 (570)
T ss_dssp EECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----------------------------------------------
T ss_pred ccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEE
Confidence 433 79999999999999999999999999999999999
Q ss_pred ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107 298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG 329 (334)
Q Consensus 298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~ 329 (334)
.+++|.. ++++++||+|++|||+|++|++..
T Consensus 515 vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 515 VVAERADAPPDAAELRRHVAEALPAYMVPVE-CVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp --------------------------------------------------------
T ss_pred EEecCCCCCcCHHHHHHHHHhhCccccCCcE-EEEcccCCCCCCcCcchHhhhccC
Confidence 5666777 999999999999999999999764
No 27
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-47 Score=359.80 Aligned_cols=256 Identities=24% Similarity=0.328 Sum_probs=208.5
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM 134 (334)
Q Consensus 55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~ 134 (334)
...++|+++|+|||||||.||||+++|+++.+........+ ...++|++++..|++|..++.. ++.++..|+
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~ 249 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-------NVTEKDRIGQFASISFDASVWE-MFMALLTGA 249 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-------CCCTTCEEEECSCTTSTHHHHH-HHHHHTTTC
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-------CCCCCCEEEEeCCccHHHHHHH-HHHHHHCCC
Confidence 45678999999999999999999999999987766554433 2678899999999999988765 678899999
Q ss_pred EEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107 135 HMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211 (334)
Q Consensus 135 ~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~ 211 (334)
++++.+. +++..+++.|+++++|+++++|+++..|... .+++||.+++||+++++++.+++.+. ++
T Consensus 250 ~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~-----~~ 318 (563)
T 1amu_A 250 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK-----VT 318 (563)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT-----SE
T ss_pred EEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC-----Ce
Confidence 9999875 6899999999999999999999998877532 46789999999999999999988764 37
Q ss_pred eeeccCCCCCCCcccccccCC-C------------------------CccccCcccc------ccccccCCccccccccC
Q psy12107 212 IRQGYGMTETSPCTLYTRFAI-P------------------------EAKLGSTGQL------VMLGYLKNEEATKETVD 260 (334)
Q Consensus 212 i~~~YG~tE~g~~~~~~~~~~-~------------------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~ 260 (334)
+++.||+||++.+++...... . ....+..|++ ++.||+++|+.|.+.|.
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~ 398 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFV 398 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcc
Confidence 999999999986554321110 0 0112233443 78999999999998884
Q ss_pred C------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107 261 S------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------- 297 (334)
Q Consensus 261 ~------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------- 297 (334)
. ++||+|||+|++|+||+++++||.||+||++|++|+
T Consensus 399 ~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~ 478 (563)
T 1amu_A 399 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVS 478 (563)
T ss_dssp ECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred cCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEe
Confidence 2 459999999999999999999999999999999999
Q ss_pred ------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107 298 ------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT 330 (334)
Q Consensus 298 ------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~ 330 (334)
++++|.. |+++++||+|++|||+|++|++...
T Consensus 479 ~~~~~~~~l~~~l~~~L~~y~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 479 EKHIPLEQLRQFSSEELPTYMIPSY-FIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp SSCCCHHHHHHHHHHHSCGGGSCSE-EEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred CCCCCHHHHHHHHHhhCchhhCCcE-EEEecccCCCCCcChhHHhcCCccc
Confidence 5667777 9999999999999999999998753
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=5.8e-48 Score=366.46 Aligned_cols=271 Identities=24% Similarity=0.358 Sum_probs=222.8
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
...+++|+++|+|||||||.||||+++|+++.++.......+ ...+++++++.+|++|.+++...++.++..|
T Consensus 162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G 234 (590)
T 3kxw_A 162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-------HMNDETIIFSWLPPHHDMGLIGCILTPIYGG 234 (590)
T ss_dssp CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHTTTHHHHHHT
T ss_pred CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-------CCCCcCeEEEecCCCcchhhHHHHHHHHhcC
Confidence 456789999999999999999999999999998887665544 3678999999999999999887678899999
Q ss_pred cEEEEcCCC----CHHHHHHHHHHcCCeEEeechHHHHHHhcCCC---CCccccccceeeeecCCCCCHHHHHHHHHHhc
Q psy12107 134 MHMITIPKF----TPETYIECVVKYKPTILFVVPSLLLFLASHPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQ 206 (334)
Q Consensus 134 ~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~---~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~ 206 (334)
+++++.+.+ ++..+++.|+++++|++.++|+++..+.+... ....++++||.+++||+++++++.+++.+.|+
T Consensus 235 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 314 (590)
T 3kxw_A 235 IQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFK 314 (590)
T ss_dssp CEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred ceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHH
Confidence 999998765 79999999999999999999999998876532 34567899999999999999999999999985
Q ss_pred cC---CCceeeccCCCCCCCcccccccC------------------------------------------------CCCc
Q psy12107 207 RE---DITIRQGYGMTETSPCTLYTRFA------------------------------------------------IPEA 235 (334)
Q Consensus 207 ~~---~~~i~~~YG~tE~g~~~~~~~~~------------------------------------------------~~~~ 235 (334)
.. +++++|.||+||++.+++..... ..+.
T Consensus 315 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~~~~~~~ 394 (590)
T 3kxw_A 315 EFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPC 394 (590)
T ss_dssp GGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECTTTCCBC
T ss_pred HcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcCCCCcCC
Confidence 31 34799999999998765532110 0112
Q ss_pred cccCcccc------ccccccCCccccccccCC------CC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee----
Q psy12107 236 KLGSTGQL------VMLGYLKNEEATKETVDS------EG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---- 297 (334)
Q Consensus 236 ~~~~~G~~------~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---- 297 (334)
..+..|++ ++.||+++|+.|.+.|.. +| ||+|||+|+++ ||.++++||.||+||++|++|+
T Consensus 395 ~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eI 473 (590)
T 3kxw_A 395 DFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDI 473 (590)
T ss_dssp CTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHH
T ss_pred CCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHH
Confidence 23444554 788999999999998853 24 99999999998 9999999999999999999998
Q ss_pred ----------------------------------------------------------eeeeccCcEEEe--ecCCCCCC
Q psy12107 298 ----------------------------------------------------------PYKKLAGGVKFL--ETIPRNPA 317 (334)
Q Consensus 298 ----------------------------------------------------------~~~~~~~~i~~v--~~lP~t~~ 317 (334)
.++.|...+.++ ++||+|++
T Consensus 474 E~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~s 553 (590)
T 3kxw_A 474 EFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTS 553 (590)
T ss_dssp HHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSC
T ss_pred HHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCC
Confidence 133443236776 69999999
Q ss_pred chhhHHHHhhhhcCC
Q psy12107 318 GKVLRNELKVFGTNP 332 (334)
Q Consensus 318 GKi~r~~l~~~~~~~ 332 (334)
|||+|++||+.+.+.
T Consensus 554 GKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 554 GKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcC
Confidence 999999999987543
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.7e-46 Score=353.14 Aligned_cols=269 Identities=26% Similarity=0.462 Sum_probs=219.9
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++|+++|+|||||||.||||+++|+++.++......... ...++|++++.+|++|.+++...++.++..|
T Consensus 171 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g 244 (576)
T 3gqw_A 171 QRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI------KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQ 244 (576)
T ss_dssp CCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS------CCCTTCCEEECCCTTSHHHHHHHTHHHHHTT
T ss_pred CCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc------CCCCcceEEEcCCccccccHHHHHHHHHhcC
Confidence 3456899999999999999999999999999887766543211 2678999999999999999987778889999
Q ss_pred cEEEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC---CCccccccceeeeecCCCCCHHHHHHHHHHhc
Q psy12107 134 MHMITIPK----FTPETYIECVVKYKPTILFVVPSLLLFLASHPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQ 206 (334)
Q Consensus 134 ~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~---~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~ 206 (334)
+++++.+. +++..+++.|+++++|+++++|+++..+.+... ....++++||.+++||+++++++.+++.+.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 324 (576)
T 3gqw_A 245 LSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFR 324 (576)
T ss_dssp CCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred ceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHh
Confidence 99988764 588999999999999999999999988866543 23456889999999999999999999999984
Q ss_pred cC---CCceeeccCCCCCCCcccccccCC--------------------------------------------------C
Q psy12107 207 RE---DITIRQGYGMTETSPCTLYTRFAI--------------------------------------------------P 233 (334)
Q Consensus 207 ~~---~~~i~~~YG~tE~g~~~~~~~~~~--------------------------------------------------~ 233 (334)
.. ++.+++.||+||++.+++...... .
T Consensus 325 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~ 404 (576)
T 3gqw_A 325 QVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGM 404 (576)
T ss_dssp GGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSC
T ss_pred hcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCC
Confidence 21 347999999999987655332100 0
Q ss_pred CccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------
Q psy12107 234 EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------- 297 (334)
Q Consensus 234 ~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------- 297 (334)
+...+..|++ +++||+++++.+...+ .+|||+|||+|++ +||+++++||.||+||++|++|+
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 482 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQ 482 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTT
T ss_pred CCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHh
Confidence 1122333444 7899999998877755 6899999999999 79999999999999999999999
Q ss_pred ----------------------------------------------eeeeccCcEEEee--cCCCCCCchhhHHHHhhhh
Q psy12107 298 ----------------------------------------------PYKKLAGGVKFLE--TIPRNPAGKVLRNELKVFG 329 (334)
Q Consensus 298 ----------------------------------------------~~~~~~~~i~~v~--~lP~t~~GKi~r~~l~~~~ 329 (334)
.++.|.. +.+++ +||+|++|||+|++|++.+
T Consensus 483 ~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-i~~v~~~~lP~t~~GKi~r~~l~~~~ 561 (576)
T 3gqw_A 483 EPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAA-IDLLPPHSIPRTSSGKPARAEAKKRY 561 (576)
T ss_dssp SSSCCTTSEEEEECTTSCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEE-EEEECSSCSCBCTTSSBCHHHHHHHH
T ss_pred CcccccccEEEEEcCCccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCcee-EEEECCCCcCcCCCccchHHHHHHHH
Confidence 2344554 78887 8999999999999999987
Q ss_pred cC
Q psy12107 330 TN 331 (334)
Q Consensus 330 ~~ 331 (334)
.+
T Consensus 562 ~~ 563 (576)
T 3gqw_A 562 QK 563 (576)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.6e-45 Score=373.91 Aligned_cols=261 Identities=24% Similarity=0.322 Sum_probs=217.3
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++++|||+|||||||.||||+++|+++.+. ......+ ...++++++...|+.|..+... ++.++..|
T Consensus 602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-------~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G 672 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-------AFSDQDTFLSVSNYAFDAFTFD-FYASMLNA 672 (1304)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-------CCCTTCEEEECSCTTSTHHHHH-HHHHHTTT
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-------CCCCCCEEEEECCccHHHHHHH-HHHHHHcC
Confidence 3567899999999999999999999999999865 2222222 2678899999999988877665 78899999
Q ss_pred cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107 134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210 (334)
Q Consensus 134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~ 210 (334)
+++++.+. .++..+.+.|+++++|+++++|+++..|.+.. ...+++||.+++|||++++++.+++.+.++ ++
T Consensus 673 ~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~ 747 (1304)
T 2vsq_A 673 ARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMG--PG 747 (1304)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHC--TT
T ss_pred CEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCC--CC
Confidence 99999874 68999999999999999999999999997642 245788999999999999999999999987 56
Q ss_pred ceeeccCCCCCCCcccccccCC--------------------------CCccccCcccc------ccccccCCccccccc
Q psy12107 211 TIRQGYGMTETSPCTLYTRFAI--------------------------PEAKLGSTGQL------VMLGYLKNEEATKET 258 (334)
Q Consensus 211 ~i~~~YG~tE~g~~~~~~~~~~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~ 258 (334)
+++|.||+||++.+++...... .+...|..|++ +++||+++|+.|++.
T Consensus 748 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~ 827 (1304)
T 2vsq_A 748 KLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEK 827 (1304)
T ss_dssp CEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHH
T ss_pred EEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhh
Confidence 8999999999987554322110 01122344444 789999999999998
Q ss_pred cCC------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------
Q psy12107 259 VDS------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------- 297 (334)
Q Consensus 259 ~~~------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------- 297 (334)
|.. ++||+|||+|++++||.++++||.||+||++|++|+
T Consensus 828 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~v 907 (1304)
T 2vsq_A 828 FIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYL 907 (1304)
T ss_dssp EEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEE
T ss_pred hccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEE
Confidence 842 459999999999999999999999999999999999
Q ss_pred --------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107 298 --------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG 329 (334)
Q Consensus 298 --------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~ 329 (334)
.|++|.. ++++++||+|++|||||++|++..
T Consensus 908 v~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 908 VNRTQLSAEDVKAHLKKQLPAYMVPQT-FTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp ECSSSSCHHHHHHHHHHHSCGGGSCSE-EEEESCCCCCSSCSSCCSCCCCCC
T ss_pred eCCCCCCHHHHHHHHHHhChHhhhccE-EEEecccCCCCCcccCHhhcCCcc
Confidence 5666777 999999999999999999998653
No 31
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.8e-45 Score=347.32 Aligned_cols=268 Identities=21% Similarity=0.216 Sum_probs=171.2
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccc-cCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHh
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV-NHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMY 132 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 132 (334)
....++++++|+|||||||.||||+++|+++......+...... ..........+++++..|+.|..++.. ++.++..
T Consensus 170 ~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 248 (562)
T 3ite_A 170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLAWRF 248 (562)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHHHHT
T ss_pred cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHHHhc
Confidence 34567899999999999999999999999998776544322100 000002567789999999988887765 6788899
Q ss_pred CcEEEEcCCC-CHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107 133 GMHMITIPKF-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211 (334)
Q Consensus 133 G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~ 211 (334)
|+++++.+.+ .++.+.+.++++++|+++++|+++..+.. ...++++||.+++||+++++++.+++.+.++ ++
T Consensus 249 g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~---~~ 321 (562)
T 3ite_A 249 GLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDR---VA 321 (562)
T ss_dssp TCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEEESSCCCHHHHHHHTTCSS---CE
T ss_pred ccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEEecCCCCHHHHHHHhhCCC---cE
Confidence 9999987654 35778899999999999999999988754 3457889999999999999999999988765 48
Q ss_pred eeeccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccccCC
Q psy12107 212 IRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS 261 (334)
Q Consensus 212 i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~ 261 (334)
++|.||+||++..++...... .....+..|++ ++.|||++|+.+...+ .
T Consensus 322 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~ 400 (562)
T 3ite_A 322 LVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-I 400 (562)
T ss_dssp EEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-E
T ss_pred EEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-C
Confidence 999999999986554321110 11233445554 7889999999888765 3
Q ss_pred CC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------------
Q psy12107 262 EG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------------ 297 (334)
Q Consensus 262 ~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------------ 297 (334)
+| ||+|||+|++|+||+++++||.||+||++|++|+
T Consensus 401 ~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~ 480 (562)
T 3ite_A 401 NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGA 480 (562)
T ss_dssp TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccc
Confidence 55 9999999999999999999999999999999998
Q ss_pred -----------------------------eeeeccCcEEEeecCCCC-CCchhhHHHHhhhhcC
Q psy12107 298 -----------------------------PYKKLAGGVKFLETIPRN-PAGKVLRNELKVFGTN 331 (334)
Q Consensus 298 -----------------------------~~~~~~~~i~~v~~lP~t-~~GKi~r~~l~~~~~~ 331 (334)
+|++|+. |+++++||+| ++|||+|++|++++.+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~-i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 481 AVRGELRWINENYKEINNSLRQACEQTLPAYMVPDF-IIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccccccchhhHHHHHHHHHHhhCCcccCCcE-EEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 3445666 9999999998 9999999999998764
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=9.9e-42 Score=312.06 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=182.1
Q ss_pred CCCC-CCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 55 KISP-NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 55 ~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
.+++ +++++++|||||||.||+|+++|+++..+........... ...++|+++..+|+.|..+....++.++..|
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G 156 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV----GIRKTDVFQNSSGYGMFTGGLGFQYGAERLG 156 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT----TCCTTSEEEECSCCTTCHHHHHHHHHHHHHT
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc----CCCCCCEEEECcccccchhHHHHHHHHHHcC
Confidence 4566 8999999999999999999999999977655443221111 2678899999999877776666678889999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107 134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~ 211 (334)
+++++.+.++++.+++.|+++++|+++++|+++..|++....... .+++||.+++||+++++++.+++++.|+. +
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~---~ 233 (436)
T 3qov_A 157 CLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV---K 233 (436)
T ss_dssp CEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS---E
T ss_pred CEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc---c
Confidence 999998888999999999999999999999999999876433333 37899999999999999999999999964 8
Q ss_pred eeeccCCCCCCCc-ccccccC--------------------CCCccccCccccccccccCCccccccccCCCCceecCce
Q psy12107 212 IRQGYGMTETSPC-TLYTRFA--------------------IPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDV 270 (334)
Q Consensus 212 i~~~YG~tE~g~~-~~~~~~~--------------------~~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 270 (334)
++|.||+||+++. ....... ......|..|+++.+|. +...+ +++||+|||+
T Consensus 234 v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------~~~~~-~~~~y~TGDl 306 (436)
T 3qov_A 234 AYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------DREMM-PLIRYRTRDL 306 (436)
T ss_dssp EEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------SCCSS-CCCSEEEEEE
T ss_pred EEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------CcCCc-eEEEEEcCCE
Confidence 9999999999533 2211110 01123345566666663 33444 6899999999
Q ss_pred EEEecCC------c---EEEEccCCceEEEcCEEee
Q psy12107 271 AYYDEDG------Y---FYIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 271 ~~~~~dg------~---~~~~GR~~d~i~~~G~~i~ 297 (334)
|+++++| . ++++||.||+||++|++|+
T Consensus 307 ~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~ 342 (436)
T 3qov_A 307 TRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIF 342 (436)
T ss_dssp ECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEEC
T ss_pred EEEcCCCCCCCCCccccCcccCccCCEEEECCEEEC
Confidence 9999998 4 6999999999999999999
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.4e-40 Score=304.58 Aligned_cols=229 Identities=20% Similarity=0.217 Sum_probs=178.6
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHh
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMY 132 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~ 132 (334)
..++++++++++|||||||.||+|+++|+++..+........... ...++|+++..+|+ +|..++.. .+.++..
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA----GARRGDKVHVSYGYGLFTGGLGA-HYGAERA 159 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT----TCCTTCEEEECSCCSSSHHHHHH-HHHHHHT
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc----CCCCCCEEEEcccccccccchHH-HHHHHHc
Confidence 345678999999999999999999999999876654333211000 25788999999998 67766655 6788999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107 133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDI 210 (334)
Q Consensus 133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~ 210 (334)
|+++++.+.++++.+++.|+++++|+++++|+++..|++....... .++++|.+++||+++++++.+++++.|+.
T Consensus 160 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~--- 236 (437)
T 2y27_A 160 GLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI--- 236 (437)
T ss_dssp TCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS---
T ss_pred CCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc---
Confidence 9999988888999999999999999999999999999875332222 35789999999999999999999999964
Q ss_pred ceeeccCCCCC-CC-cccccccCC--------------------CCccccCccccccccccCCccccccccCCCCceecC
Q psy12107 211 TIRQGYGMTET-SP-CTLYTRFAI--------------------PEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG 268 (334)
Q Consensus 211 ~i~~~YG~tE~-g~-~~~~~~~~~--------------------~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TG 268 (334)
++++.||+||+ +. +...+.... .+...|..|+++.+|. +.+.+ +++||+||
T Consensus 237 ~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------t~~~~-~~~~y~TG 309 (437)
T 2y27_A 237 DAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------TKEAL-PIIRYRTR 309 (437)
T ss_dssp EEEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------SCSSS-CCCSEEEE
T ss_pred CEEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------CcCCc-hhheeecC
Confidence 89999999997 43 222221110 0112344556566553 33445 68999999
Q ss_pred ceEEEec-CCcE-----EEEccCCceEEEcCEEee
Q psy12107 269 DVAYYDE-DGYF-----YIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 269 D~~~~~~-dg~~-----~~~GR~~d~i~~~G~~i~ 297 (334)
|+|++++ +|++ ++.||.||+||++|++|+
T Consensus 310 Dl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~ 344 (437)
T 2y27_A 310 DLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVF 344 (437)
T ss_dssp EEECEECCSSSSSCEECCCCEEGGGCEEETTEEEC
T ss_pred CEEEEeCCCCCCccccCccccccCCeEEECCeEEC
Confidence 9999999 6985 899999999999999999
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.2e-40 Score=302.69 Aligned_cols=229 Identities=20% Similarity=0.221 Sum_probs=178.6
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHh
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMY 132 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~ 132 (334)
..++++++++++|||||||.||+|+++|+++.............. ...++|+++..+|+ +|..++.. .+.++..
T Consensus 87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~----~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~ 161 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA----GGRPGDTLHNAFGYGLFTGGLGI-HYGAERL 161 (443)
T ss_dssp CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT----TCCTTCEEEECSCCSSSHHHHHH-HHHHHHH
T ss_pred cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc----CCCCCCEEEEeccCcccccHHHH-HHHHHHc
Confidence 345678999999999999999999999999876654333211010 25788999999998 46655554 6788899
Q ss_pred CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107 133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDI 210 (334)
Q Consensus 133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~ 210 (334)
|+++++.+.++++.+++.|+++++|+++++|+++..|++....... .+++||.+++||+++++++.+++++.|+.
T Consensus 162 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~--- 238 (443)
T 2y4o_A 162 GCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI--- 238 (443)
T ss_dssp TCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC---
T ss_pred CCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc---
Confidence 9999998888999999999999999999999999999875332222 35789999999999999999999999964
Q ss_pred ceeeccCCCCCC-C-cccccccCC--------------------CCccccCccccccccccCCccccccccCCCCceecC
Q psy12107 211 TIRQGYGMTETS-P-CTLYTRFAI--------------------PEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG 268 (334)
Q Consensus 211 ~i~~~YG~tE~g-~-~~~~~~~~~--------------------~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TG 268 (334)
++++.||+||++ . +...+.... .+...|..|+++.+|+ +.+.+ +++||+||
T Consensus 239 ~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------t~~~~-p~~~y~TG 311 (443)
T 2y4o_A 239 DALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------TKEAM-PVIRYRTR 311 (443)
T ss_dssp EEEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------SCSSS-CCSSEEEE
T ss_pred CEEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------CcccC-hhheeecC
Confidence 799999999974 3 222221110 0112344566666653 33445 68999999
Q ss_pred ceEEEecC-CcE-----EEEccCCceEEEcCEEee
Q psy12107 269 DVAYYDED-GYF-----YIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 269 D~~~~~~d-g~~-----~~~GR~~d~i~~~G~~i~ 297 (334)
|+|+++++ |++ +++||.||+||++|++|+
T Consensus 312 Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~ 346 (443)
T 2y4o_A 312 DLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVF 346 (443)
T ss_dssp EEECEECCSSSSSCEECCCCEESSCCEEETTEEEC
T ss_pred CEEEEcCCCCCCccccCccccccCCeEEECCEEEC
Confidence 99999999 987 899999999999999999
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.4e-39 Score=301.50 Aligned_cols=228 Identities=23% Similarity=0.398 Sum_probs=175.2
Q ss_pred CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG 133 (334)
Q Consensus 54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G 133 (334)
....++++++|+|||||||.||||+++|+++.++.......+..... ....+++++++.+|++|.+++...++.++..|
T Consensus 178 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 256 (480)
T 3t5a_A 178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTD-GIPPPNSALVSWLPFYHDMGLVIGICAPILGG 256 (480)
T ss_dssp CCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTT-TCCCTTEEEEECCCTTSTTHHHHHTHHHHHHT
T ss_pred CCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccc-cCCCCCCeEEEeCCCcCccHHHHHHHHHHHcC
Confidence 45678999999999999999999999999998877665543311000 00123899999999999999877788999999
Q ss_pred cEEEEcCCC----CHHHHHHHHHHcCCeEEeechHHHHHHhcC----CCCCccccccceeeeecCCCCCHHHHHHHHHHh
Q psy12107 134 MHMITIPKF----TPETYIECVVKYKPTILFVVPSLLLFLASH----PAVTPEHLASIREVTCGAAPATKSLIDKFKQKV 205 (334)
Q Consensus 134 ~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~----~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~ 205 (334)
+++++.+.+ ++..+++.|+++++| +..+|+++..++.. ......++++||.+++||+++++++.+++.+.|
T Consensus 257 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 335 (480)
T 3t5a_A 257 YPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRF 335 (480)
T ss_dssp CCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHS
T ss_pred CceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHH
Confidence 999998753 899999999999999 88899988887653 223456789999999999999999999999998
Q ss_pred cc---CCCceeeccCCCCCCCcccccccC-----------------------------------------------CCCc
Q psy12107 206 QR---EDITIRQGYGMTETSPCTLYTRFA-----------------------------------------------IPEA 235 (334)
Q Consensus 206 ~~---~~~~i~~~YG~tE~g~~~~~~~~~-----------------------------------------------~~~~ 235 (334)
+. +++.++|.||+||++.+++..... ..+.
T Consensus 336 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd~~~g~~~ 415 (480)
T 3t5a_A 336 ARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIEC 415 (480)
T ss_dssp GGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEETTTTEEC
T ss_pred hhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEcCCCCcCC
Confidence 52 245799999999998765543211 0112
Q ss_pred cccCcccc------ccccccCCccccccccC-----------CCCceecCceEEEecCCcEEEEcc
Q psy12107 236 KLGSTGQL------VMLGYLKNEEATKETVD-----------SEGWLHTGDVAYYDEDGYFYIVDR 284 (334)
Q Consensus 236 ~~~~~G~~------~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~dg~~~~~GR 284 (334)
..+..|++ ++.||+++|+.|++.|. .++||+|||+|+++ ||+++++||
T Consensus 416 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 416 PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 23445555 78999999999999885 56799999999996 999999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.3e-29 Score=225.08 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=155.2
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHhC
Q psy12107 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMYG 133 (334)
Q Consensus 55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~G 133 (334)
.++++++++|+|||||||.||+|+++|+++.............. ...++|++++.+|+ +|..++.. .+.++..|
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~----~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G 161 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR----PGRPSGNTLAAIPTGPHIVGAIN-KERALRLG 161 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS----TTCCCCEEEECSCCTTCHHHHHH-HHHHHHTT
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh----CCCCcceEEEecCCCchhhhHHH-HHHHHHcC
Confidence 45788999999999999999999999999988776544332111 25788999999999 99988877 45558888
Q ss_pred cEEEEcCCCCHH-----------------------HHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecC
Q psy12107 134 MHMITIPKFTPE-----------------------TYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190 (334)
Q Consensus 134 ~~~~~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G 190 (334)
+ +++...+++. .+++.|+++++|+++++|+++..|++.......++++||.+++||
T Consensus 162 ~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG 240 (369)
T 3hgu_A 162 G-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG 240 (369)
T ss_dssp S-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred C-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence 8 6666667877 888899999999999999999999887443345678999999999
Q ss_pred CCCCHHHHHHHH-HHhccCCCceeeccCCCCCCCcccccccC---C---------------------CCccccCcccccc
Q psy12107 191 APATKSLIDKFK-QKVQREDITIRQGYGMTETSPCTLYTRFA---I---------------------PEAKLGSTGQLVM 245 (334)
Q Consensus 191 ~~l~~~~~~~~~-~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---~---------------------~~~~~~~~G~~~~ 245 (334)
++++++++++++ +.|+ +++++|.||+||+++++..+... . .+...|..|+++.
T Consensus 241 e~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~v 318 (369)
T 3hgu_A 241 TELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV 318 (369)
T ss_dssp SCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEE
T ss_pred ccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceeccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEE
Confidence 999999999999 8995 56899999999988655433211 0 0011222333333
Q ss_pred ccccCCccccccccCCCCceecCceEEEecC--C-------cEEEEccCCceEEEcCE
Q psy12107 246 LGYLKNEEATKETVDSEGWLHTGDVAYYDED--G-------YFYIVDRTKELIKVKGN 294 (334)
Q Consensus 246 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d--g-------~~~~~GR~~d~i~~~G~ 294 (334)
++..+ ..+ -.+|+|||++++.+. | .+..++|.++..++.|.
T Consensus 319 t~l~~------~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 319 THLSP------WAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEET------TEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEcCc------ccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 32211 111 236999999998654 2 25567788888887774
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.51 E-value=4.2e-08 Score=90.79 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=31.2
Q ss_pred ceecCceEEEec----CCcEEEEccCCceEEEcCEEee
Q psy12107 264 WLHTGDVAYYDE----DGYFYIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 264 ~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~i~ 297 (334)
.|++||++++.. ..++.|+||.+|++++.|++++
T Consensus 399 RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~ 436 (581)
T 4eql_A 399 RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTN 436 (581)
T ss_dssp SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEE
T ss_pred eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECC
Confidence 499999999976 4679999999999999999999
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.31 E-value=2.2e-07 Score=86.12 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=31.0
Q ss_pred ceecCceEEEec----CCcEEEEccCCceEEEcCEEee
Q psy12107 264 WLHTGDVAYYDE----DGYFYIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 264 ~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~i~ 297 (334)
.|++||+++++. ..++.|+||.+|++++.|++|+
T Consensus 411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~ 448 (609)
T 4b2g_A 411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTD 448 (609)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCC
Confidence 399999999974 4689999999999999999999
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.23 E-value=2.5e-07 Score=85.46 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=30.7
Q ss_pred ceecCceEEEecC----CcEEEEccCCceEEEcCEEee
Q psy12107 264 WLHTGDVAYYDED----GYFYIVDRTKELIKVKGNQVA 297 (334)
Q Consensus 264 ~~~TGD~~~~~~d----g~~~~~GR~~d~i~~~G~~i~ 297 (334)
.|++||++++..- .++.|+||.++++++.|++++
T Consensus 406 RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~ 443 (581)
T 4epl_A 406 RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNT 443 (581)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECC
Confidence 4999999998643 579999999999999999999
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.97 E-value=1.4e-06 Score=62.73 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=14.2
Q ss_pred ccCCceEEEcCEEee
Q psy12107 283 DRTKELIKVKGNQVA 297 (334)
Q Consensus 283 GR~~d~i~~~G~~i~ 297 (334)
.|.||+|+++|.|||
T Consensus 1 srADDmIiv~G~nv~ 15 (109)
T 3lax_A 1 SNADDMIILKGVNIF 15 (109)
T ss_dssp CGGGSCEEETTEEEC
T ss_pred CCcCEEEEECCEEEC
Confidence 489999999999999
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.76 E-value=9.5e-06 Score=58.29 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=14.0
Q ss_pred ccCCceEEEcCEEee
Q psy12107 283 DRTKELIKVKGNQVA 297 (334)
Q Consensus 283 GR~~d~i~~~G~~i~ 297 (334)
||.||+|+++|.+|+
T Consensus 1 GR~~D~Iiv~G~nv~ 15 (109)
T 3gxs_A 1 SNADDMIILKGVNIF 15 (109)
T ss_dssp CGGGSCEEETTEEEC
T ss_pred CCccCEEEECCEEEC
Confidence 799999999999999
No 42
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=83.14 E-value=12 Score=29.64 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=57.5
Q ss_pred CCceEEEecch-hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEee--ch----HH--HHHHhcCCCC
Q psy12107 106 SQETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFV--VP----SL--LLFLASHPAV 175 (334)
Q Consensus 106 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~--~p----~~--l~~l~~~~~~ 175 (334)
...+++.+.+- .|..|........-..|..++... ...++.+++.+++++++++.. .. ++ +..+.+..+.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~ 171 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence 44555655554 788888775555557888887765 468999999999999997777 22 11 2222221111
Q ss_pred CccccccceeeeecCCCCCHHHHHH
Q psy12107 176 TPEHLASIREVTCGAAPATKSLIDK 200 (334)
Q Consensus 176 ~~~~~~~lr~v~~~G~~l~~~~~~~ 200 (334)
... ...++ +++||.+++++..+.
T Consensus 172 ~~~-~~~v~-v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 172 EKL-RDSVK-CMFGGAPVSDKWIEE 194 (215)
T ss_dssp TTC-GGGSE-EEEESSSCCHHHHHH
T ss_pred cCC-CCCCE-EEEECCCCCHHHHHH
Confidence 110 01333 688999999775443
No 43
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=76.83 E-value=11 Score=34.45 Aligned_cols=97 Identities=8% Similarity=0.027 Sum_probs=68.8
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.++.+|++....| -.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~ 101 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKI----GIQQGDVIMLFLPSSPE--FVLAFLGASHRGAII 101 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEE
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEE
Confidence 3577887653333 2368888877666665554332 36788998888876543 333478889999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeechHHH
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVPSLL 166 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l 166 (334)
+..+. ...+.+...+++.++..++..+...
T Consensus 102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~ 132 (536)
T 3ni2_A 102 TAANPFSTPAELAKHAKASRAKLLITQACYY 132 (536)
T ss_dssp EECCTTCCHHHHHHHHHHHTEEEEEECGGGT
T ss_pred eccCCCCCHHHHHHHHHhcCCEEEEEChHHH
Confidence 88764 7889999999999999998876543
No 44
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=75.34 E-value=20 Score=32.85 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=70.9
Q ss_pred CCCEEEEecCCCC-CCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 58 PNDLAMLPYSSGT-TGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 58 ~~~~a~i~~TSGT-TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
|+.+|++....+. .+.. -.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..
T Consensus 33 p~~~A~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~ 104 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEFP--ESMNFLEICEVTKKLASGISRK----GVRKGEHVGVCIPNSID--YVMTIYALWRVAATP 104 (549)
T ss_dssp TTSEEEEEESSCCCCSSC--SEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEE
T ss_pred CCceEEEeCCCccccccc--ceeeHHHHHHHHHHHHHHHHHc----CCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEE
Confidence 5677776543221 1222 3468888777666665554332 36788999888876543 333478899999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~ 168 (334)
+.++. ...+.+...+++.++..++..+.....
T Consensus 105 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~ 137 (549)
T 3g7s_A 105 VPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137 (549)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHH
T ss_pred EccCCCCCHHHHHHHHHhcCCCEEEEChHHHHH
Confidence 88764 788999999999999999887755443
No 45
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=71.54 E-value=15 Score=33.28 Aligned_cols=96 Identities=11% Similarity=0.169 Sum_probs=69.3
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
|+.+|++.- +-.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..+
T Consensus 20 pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~v 84 (509)
T 3ivr_A 20 PDRTAFMVD---------GVRLTHRDYLARAERLASGLLRD----GVHTGDRVAILSQNCSE--MIELIGAVALIGAILL 84 (509)
T ss_dssp TTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEE
T ss_pred CCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEE
Confidence 566776641 13478888877766666554332 36788988888876543 3344788899999998
Q ss_pred EcCC-CCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107 138 TIPK-FTPETYIECVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 138 ~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~ 168 (334)
.++. ...+.+...+++.++..++..+.....
T Consensus 85 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 85 PVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp ECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred ecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 8764 788999999999999999987765444
No 46
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=68.96 E-value=28 Score=31.30 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=66.5
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
|+.+|.+... ++ ..+|.+.+......+...+... +..++|++...++-...+ ...+++++..|+..+
T Consensus 16 p~~~a~~~~~---~~----~~~Ty~el~~~~~~~A~~L~~~----Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v 82 (504)
T 1t5h_X 16 PDHCALAVPA---RG----LRLTHAELRARVEAVAARLHAD----GLRPQQRVAVVAPNSADV--VIAILALHRLGAVPA 82 (504)
T ss_dssp TTSEEEEETT---TT----EEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEE
T ss_pred CCceEEEEcC---CC----ceeEHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEE
Confidence 4567766432 12 3478888877766655554322 267888888888765433 334788899999988
Q ss_pred EcCC-CCHHHHHHHHHHcCCeEEee--chHHHHH
Q psy12107 138 TIPK-FTPETYIECVVKYKPTILFV--VPSLLLF 168 (334)
Q Consensus 138 ~~~~-~~~~~~~~~i~~~~~t~l~~--~p~~l~~ 168 (334)
..+. ..++++...+++.++..++. .+.....
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 7764 67899999999999999888 5544433
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=66.88 E-value=32 Score=31.14 Aligned_cols=95 Identities=9% Similarity=0.060 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
|+.+|++.. | ....+|.+.+......+...+... +..++|++...++-... +...+++++..|+..+
T Consensus 30 p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v 96 (517)
T 3r44_A 30 PRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTAL----GIAKGDRVALLMPNSVE--FCCLFYGAAKLGAVAV 96 (517)
T ss_dssp TTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEE
T ss_pred CCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHc----CCCCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEE
Confidence 466776653 1 113478888877666665554332 36788998888876543 3334788899999998
Q ss_pred EcCC-CCHHHHHHHHHHcCCeEEeechHH
Q psy12107 138 TIPK-FTPETYIECVVKYKPTILFVVPSL 165 (334)
Q Consensus 138 ~~~~-~~~~~~~~~i~~~~~t~l~~~p~~ 165 (334)
.++. ...+.+...+++.++.+++..+..
T Consensus 97 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 125 (517)
T 3r44_A 97 PINTRLAAPEVSFILSDSGSKVVIYGAPS 125 (517)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGG
T ss_pred ecCcccCHHHHHHHHHhcCceEEEECCch
Confidence 8764 688899999999999999876543
No 48
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=66.80 E-value=26 Score=31.15 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=71.1
Q ss_pred CCCEEEEecCC--CCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107 58 PNDLAMLPYSS--GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH 135 (334)
Q Consensus 58 ~~~~a~i~~TS--GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~ 135 (334)
|+.+|.+.... +.+|. ...+|.+.+......+...+... +. ++|++...++-... +...+++++..|+.
T Consensus 38 pd~~Al~~~~~~~~~~g~--~~~~Ty~el~~~~~~lA~~L~~~----g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v 108 (480)
T 3t5a_A 38 PHDPAFTFMDYEQDWDGV--AITLTWSQLYRRTLNVAQELSRC----GS-TGDRVVISAPQGLE--YVVAFLGALQAGRI 108 (480)
T ss_dssp TTSEEEEEEETTTCTTCE--EEEEEHHHHHHHHHHHHHHHTTS----SC-TTCEEEEECCSSHH--HHHHHHHHHHTTCE
T ss_pred CCCceEEEecccCCCCCc--eEEEcHHHHHHHHHHHHHHHHhc----CC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcE
Confidence 56777765432 23332 23578888877776666655322 23 77888877776543 33447889999999
Q ss_pred EEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHHHh
Q psy12107 136 MITIPK----FTPETYIECVVKYKPTILFVVPSLLLFLA 170 (334)
Q Consensus 136 ~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~ 170 (334)
.+.++. ...+++...+++.++..++..+.....+.
T Consensus 109 ~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 109 AVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp EEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred EEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 887753 45788999999999999999877665554
No 49
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=65.05 E-value=30 Score=31.96 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=68.9
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.|+.+|++..... |. ...+|.+.+......+...+... +..++|++...++-..- +...+++++..|+..
T Consensus 69 ~pd~~Al~~~~~~--g~--~~~~Ty~eL~~~~~~~A~~L~~~----Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~ 138 (580)
T 3etc_A 69 SPEKLAMIWCDDY--GN--EKIFTFKDLKYYSDKAANFFVKH----GIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIA 138 (580)
T ss_dssp CTTCEEEEEEESS--SC--EEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEE
T ss_pred CCCCEEEEEEcCC--CC--EeEEeHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEE
Confidence 5788887765321 21 23478888777666655554322 36788999888876543 334478889999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeech
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p 163 (334)
+..+. +.++++...+++.++..++..+
T Consensus 139 vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 139 VPATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp EECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred EeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 88764 7889999999999999988754
No 50
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=65.01 E-value=27 Score=31.89 Aligned_cols=84 Identities=11% Similarity=-0.043 Sum_probs=60.7
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+......+...+... +..++|++...++-..-+ ...+++++..|+..+..+. ...+++...+++.++
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~e~--~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~ 125 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNY----GLVVDGRIALCSENCEEF--FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKP 125 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHH----TCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCC
T ss_pred EeeHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEeCCchhH--HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCC
Confidence 478888777666655544322 267889888888765433 3336888889999887764 688999999999999
Q ss_pred eEEeechHHHH
Q psy12107 157 TILFVVPSLLL 167 (334)
Q Consensus 157 t~l~~~p~~l~ 167 (334)
..++..+....
T Consensus 126 ~~vi~~~~~~~ 136 (548)
T 2d1s_A 126 TIVFSSKKGLD 136 (548)
T ss_dssp SEEEECTTTHH
T ss_pred eEEEEcHHHHH
Confidence 99988765433
No 51
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=64.19 E-value=35 Score=31.32 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=68.3
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.|+.+|.+.. + -.+|.+.+..........+... +..++|++...++-... +...+++++..|+..
T Consensus 52 ~p~~~Al~~~--~-------~~~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~ 116 (563)
T 1amu_A 52 RPNNVAIVCE--N-------EQLTYHELNVKANQLARIFIEK----GIGKDTLVGIMMEKSID--LFIGILAVLKAGGAY 116 (563)
T ss_dssp CTTSEEEEET--T-------EEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEE
T ss_pred CCCCeEEEeC--C-------ceecHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEE
Confidence 3567776631 1 2478888777666555544322 26788988888876543 334478889999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~ 168 (334)
+..+. ...+.+...+++.++..++..+.....
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 88764 678999999999999999988765443
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=63.91 E-value=23 Score=32.27 Aligned_cols=100 Identities=10% Similarity=-0.015 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
++.+|++....+ . .-.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..+
T Consensus 32 p~~~a~~~~~~~-~----~~~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v 100 (541)
T 1v25_A 32 GRKEVVSRLHTG-E----VHRTTYAEVYQRARRLMGGLRAL----GVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLH 100 (541)
T ss_dssp TTCEEEEECTTS-C----EEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred CCceEEEEecCC-C----CceecHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEE
Confidence 456676543211 1 23468888777666555544322 36788998888876543 3334788899999988
Q ss_pred EcCC-CCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107 138 TIPK-FTPETYIECVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 138 ~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~ 168 (334)
..+. ...+.+...+++.++..++..+.....
T Consensus 101 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 132 (541)
T 1v25_A 101 TANPRLSPKEIAYILNHAEDKVLLFDPNLLPL 132 (541)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred ecCcccCHHHHHHHHHhCCCcEEEEChhHHHH
Confidence 8764 688999999999999999987765443
No 53
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=63.15 E-value=44 Score=31.45 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=68.7
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCcc-ccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI-VNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH 135 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~ 135 (334)
.++.+|.+.... .+|. ...+|.+.+......+...+. .. +..++|++...+|...-+ ...+++++..|+.
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~----Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav 165 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSM----GVRKGDTVAVYMPMVPEA--IITLLAISRIGAI 165 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTS----CCCTTCEEEECCCSSHHH--HHHHHHHHHTTCE
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhc----CCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCE
Confidence 357788775422 2222 134788888777666555543 22 367899999988876543 3346888999998
Q ss_pred EEEcC-CCCHHHHHHHHHHcCCeEEeech
Q psy12107 136 MITIP-KFTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 136 ~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 163 (334)
.+.+. .+.++.+...|++.++.+++...
T Consensus 166 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 166 HSVVFAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred EEeeCCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 88775 58899999999999999998754
No 54
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=62.74 E-value=24 Score=32.05 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.++.+|++.. | ..+|.+.+..........+... +..++|++...++-...+ ...+++++..|+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~ 100 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTL----GVHPEERILLVMLDTVAL--PVAFLGALYAGVVP 100 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEE
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceE
Confidence 3567776532 2 2378888877666655554322 367889888888765433 33468889999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeechHHH
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVPSLL 166 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l 166 (334)
+..+. ..++++...+++.++..++..+...
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 131 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALV 131 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGH
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhh
Confidence 88764 7889999999999999998876543
No 55
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=62.21 E-value=21 Score=32.66 Aligned_cols=86 Identities=7% Similarity=0.024 Sum_probs=63.3
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+......+...+... +..++|++...++-...+ ...+++++..|+..+..+. ...+++...+++.++
T Consensus 50 ~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~ 123 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMKRY----GLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDIYNERELLNSMNISQP 123 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHH----TCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCC
T ss_pred EeEHHHHHHHHHHHHHHHHHh----CCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCC
Confidence 478888877766665554332 267889988888765443 3346888999999888764 788999999999999
Q ss_pred eEEeechHHHHHH
Q psy12107 157 TILFVVPSLLLFL 169 (334)
Q Consensus 157 t~l~~~p~~l~~l 169 (334)
.+++.....+..+
T Consensus 124 ~~vi~~~~~~~~~ 136 (550)
T 3rix_A 124 TVVFVSKKGLQKI 136 (550)
T ss_dssp SEEEECGGGHHHH
T ss_pred eEEEEcHHHHHHH
Confidence 9999887655443
No 56
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=58.34 E-value=31 Score=31.71 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.|+.+|.+.... .|. ...+|.+.+......+...+.... +..++|++...++-... +...+++++..|+..
T Consensus 56 ~p~~~al~~~~~--~g~--~~~~Ty~el~~~~~~lA~~L~~~~---Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~ 126 (570)
T 3c5e_A 56 RPPSPALWWVNG--KGK--ELMWNFRELSENSQQAANVLSGAC---GLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIF 126 (570)
T ss_dssp SCCCEEEEEECS--SSC--EEEEEHHHHHHHHHHHHHHHHTTT---CCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEE
T ss_pred CCCceEEEEEcC--CCc--eeEEeHHHHHHHHHHHHHHHHHcc---CCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEE
Confidence 456777765421 121 134788888776666555443210 26788988888876543 333478889999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~ 168 (334)
+..+. ...+.+...+++.++..++..+.....
T Consensus 127 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 159 (570)
T 3c5e_A 127 MPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE 159 (570)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEETTTHHH
T ss_pred EecCCCCCHHHHHHHHHhcCCeEEEechHHHHH
Confidence 88764 678899999999999999887655443
No 57
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=57.71 E-value=46 Score=30.50 Aligned_cols=94 Identities=15% Similarity=0.036 Sum_probs=67.5
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.|+.+|++.. . -.+|.+.+......+...+... +..++|++...++-...+ ...+++++..|+..
T Consensus 88 ~pd~~A~~~~-~--------~~~Ty~el~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 88 APDAVALLHE-A--------DELTYGALNERANRLAHRLVGL----GVAPGTLVGVHLERGFDM--VVALLAVLKAGGGY 152 (570)
T ss_dssp CTTSEEEEET-T--------EEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEE
T ss_pred CCCCeEEECC-C--------CcEeHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEE
Confidence 4677776641 1 2378888877766666554332 367889988888766543 33478899999998
Q ss_pred EEcCC-CCHHHHHHHHHHcCCeEEeechHH
Q psy12107 137 ITIPK-FTPETYIECVVKYKPTILFVVPSL 165 (334)
Q Consensus 137 ~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~ 165 (334)
+.++. ...+.+...+++.++..++.....
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchh
Confidence 88764 688999999999999999876543
No 58
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=55.52 E-value=50 Score=30.06 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=65.6
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.|+.+|.+.- .-.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..
T Consensus 43 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 43 HPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEK----GLGKGDTALVQLPNVAE--FYIVFFALLKAGVVV 107 (544)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEE
T ss_pred CCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHC----CCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEE
Confidence 4577777631 22478888877766665554332 36788998888876543 333478889999988
Q ss_pred EEcC-CCCHHHHHHHHHHcCCeEEeech
Q psy12107 137 ITIP-KFTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 137 ~~~~-~~~~~~~~~~i~~~~~t~l~~~p 163 (334)
+..+ ....+.+...+++.++..++...
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 8765 47888999999999999998755
No 59
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=54.63 E-value=41 Score=30.25 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=60.1
Q ss_pred hcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCCe
Q psy12107 79 LSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKPT 157 (334)
Q Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t 157 (334)
+|.+.+..........+... +..++|++...++-...+ ...+++++..|+..+..+. ...+.+...+++.++.
T Consensus 29 ~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 29 ISYAELVARAGRVANVLVAR----GLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPK 102 (503)
T ss_dssp EEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCS
T ss_pred EEHHHHHHHHHHHHHHHHHc----CCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCc
Confidence 68888877666655554332 367889988888766433 3347889999999888764 7889999999999999
Q ss_pred EEeechH
Q psy12107 158 ILFVVPS 164 (334)
Q Consensus 158 ~l~~~p~ 164 (334)
.++..+.
T Consensus 103 ~vi~~~~ 109 (503)
T 4fuq_A 103 IVVCDPS 109 (503)
T ss_dssp EEEECGG
T ss_pred EEEECch
Confidence 9988654
No 60
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=54.33 E-value=46 Score=32.96 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=68.6
Q ss_pred CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136 (334)
Q Consensus 57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~ 136 (334)
.|+.+|.+...+| -.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..
T Consensus 74 ~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~ 140 (979)
T 3tsy_A 74 FATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKL----GVNQNDVVMLLLPNCPE--FVLSFLAASFRGATA 140 (979)
T ss_dssp TTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEE
T ss_pred CCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHc----CCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEE
Confidence 3678887653333 2468888777666555554332 36788999888886643 334478889999998
Q ss_pred EEcC-CCCHHHHHHHHHHcCCeEEeechHH
Q psy12107 137 ITIP-KFTPETYIECVVKYKPTILFVVPSL 165 (334)
Q Consensus 137 ~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~ 165 (334)
+.++ .+.++.+...+++.++.+++..+..
T Consensus 141 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 141 TAANPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp EEECTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred EeeCCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 8776 4788999999999999999887643
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=52.51 E-value=64 Score=29.54 Aligned_cols=102 Identities=10% Similarity=0.029 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
|+.+|++....+ ..-.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..+
T Consensus 25 p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~----gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v 93 (590)
T 3kxw_A 25 PNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAE----GAKPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAV 93 (590)
T ss_dssp TTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred CCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCchh--HHHHHHHHHHhCcEEE
Confidence 567776654311 123478888877766665554332 36788988888876544 3334788899999988
Q ss_pred EcCCC----CHHHHHHHHHHcCCeEEeechHHHHHHh
Q psy12107 138 TIPKF----TPETYIECVVKYKPTILFVVPSLLLFLA 170 (334)
Q Consensus 138 ~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~ 170 (334)
.++.. ..+.+...+++.++..+...+.....+.
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 87653 3467888899999999999888777664
No 62
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=50.94 E-value=39 Score=31.68 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
++.+|++... ..+|.- -.+|.+.+......+...+... +..++|++...+|-..-+ ...+++++..|+..+
T Consensus 90 pd~~Al~~~~-~~~~~~--~~lTY~eL~~~v~~lA~~L~~~----Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~v 160 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTSQS--KHISYRELHRDVCRFANTLLDL----GIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHS 160 (652)
T ss_dssp TTSEEEEEEC-SSTTCE--EEEEHHHHHHHHHHHHHHHHHH----TCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEE
T ss_pred CCceEEEEEc-CCCCce--eEEeHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEE
Confidence 5677776532 222222 3478888877666655554332 267889999888876543 334688888999888
Q ss_pred EcC-CCCHHHHHHHHHHcCCeEEeech
Q psy12107 138 TIP-KFTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 138 ~~~-~~~~~~~~~~i~~~~~t~l~~~p 163 (334)
.+. .+.++.+...+++.++.+++...
T Consensus 161 pl~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 161 VIFGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 775 57899999999999999888743
No 63
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=49.30 E-value=58 Score=26.44 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=54.2
Q ss_pred CCceEEEecch-hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEeechH------HHHHHhcCCCCCc
Q psy12107 106 SQETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPS------LLLFLASHPAVTP 177 (334)
Q Consensus 106 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~l~~l~~~~~~~~ 177 (334)
...+++.+.+- .|..|........-..|..++... ...++.+.+.++++++.++..... .+..+++..+...
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~ 202 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENG 202 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcC
Confidence 34455555553 778887764444457788876543 468899999999999998866431 2333332221111
Q ss_pred cccccceeeeecCCCCCHHH
Q psy12107 178 EHLASIREVTCGAAPATKSL 197 (334)
Q Consensus 178 ~~~~~lr~v~~~G~~l~~~~ 197 (334)
. . -.|++||...+++.
T Consensus 203 --~-~-~~v~vGG~~~~~~~ 218 (258)
T 2i2x_B 203 --I-K-IPFACGGGAVNQDF 218 (258)
T ss_dssp --C-C-CCEEEESTTCCHHH
T ss_pred --C-C-CcEEEECccCCHHH
Confidence 1 2 23778888888654
No 64
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=48.25 E-value=54 Score=29.45 Aligned_cols=79 Identities=6% Similarity=-0.026 Sum_probs=56.1
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+..........+... +..+++++...++-... +...+++++..|+..+..+ ....+.+...+++.++
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~----g~~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 99 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSE----YPDDRSPIMVYGHMQPE--MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGA 99 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHH----STTCCCCEEEEESSCHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCC
T ss_pred eEEHHHHHHHHHHHHHHHHHh----CCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCC
Confidence 368888877666655554332 25677877777665443 3344788889999888765 4788999999999999
Q ss_pred eEEeec
Q psy12107 157 TILFVV 162 (334)
Q Consensus 157 t~l~~~ 162 (334)
..++..
T Consensus 100 ~~~i~~ 105 (512)
T 3fce_A 100 KLLLSA 105 (512)
T ss_dssp CEEEES
T ss_pred CEEEec
Confidence 988764
No 65
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=42.17 E-value=56 Score=29.44 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=56.6
Q ss_pred hcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCe
Q psy12107 79 LSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPT 157 (334)
Q Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t 157 (334)
+|.+.+..........+... +..++|++...++-... +...+++++..|+..+.++ ....+.+...+++.++.
T Consensus 30 ~Ty~el~~~~~~lA~~L~~~----g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 30 RTYGQLKRDSDSIAAFIDSL----ALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPS 103 (521)
T ss_dssp EEHHHHHHHHHHHHHHHHHT----CCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCS
T ss_pred ecHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCC
Confidence 67888777666655544322 25678888777765543 3344788889999888765 47889999999999999
Q ss_pred EEeech
Q psy12107 158 ILFVVP 163 (334)
Q Consensus 158 ~l~~~p 163 (334)
.++...
T Consensus 104 ~ii~~~ 109 (521)
T 3l8c_A 104 LIIAIE 109 (521)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 988654
No 66
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=41.57 E-value=67 Score=29.15 Aligned_cols=80 Identities=8% Similarity=-0.011 Sum_probs=58.3
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..+..+ ....+.+...+++.++
T Consensus 50 ~~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~ 123 (539)
T 1mdb_A 50 HWSYRELDTRADRLAAGFQKL----GIQQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEA 123 (539)
T ss_dssp EEEHHHHHHHHHHHHHHHHHH----TCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcHH--HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCC
Confidence 478888777666655544322 26788988888876543 3344788899999887765 4788899999999999
Q ss_pred eEEeech
Q psy12107 157 TILFVVP 163 (334)
Q Consensus 157 t~l~~~p 163 (334)
..++..+
T Consensus 124 ~~vi~~~ 130 (539)
T 1mdb_A 124 AAYIIPD 130 (539)
T ss_dssp SEEEEES
T ss_pred CEEEecc
Confidence 9988754
No 67
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=40.54 E-value=92 Score=28.29 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=61.0
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CC-------HHHHHH
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FT-------PETYIE 149 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~-------~~~~~~ 149 (334)
.+|.+.+......+...+... +..++|++...++-... +...+++++..|+..+..+. .. .+.+..
T Consensus 49 ~~Ty~eL~~~~~~lA~~L~~~----Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~ 122 (576)
T 3gqw_A 49 QLEYQTLKARAEAGAKRLLSL----NLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQG 122 (576)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT----CCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHH
Confidence 478888877766665554332 26788998888876543 33447888999999888754 33 578888
Q ss_pred HHHHcCCeEEeechHHHHH
Q psy12107 150 CVVKYKPTILFVVPSLLLF 168 (334)
Q Consensus 150 ~i~~~~~t~l~~~p~~l~~ 168 (334)
.+++.++..++........
T Consensus 123 ~l~~~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 123 LLASCQPAAIITGDEWLPL 141 (576)
T ss_dssp HHHHHCCSEEEECGGGHHH
T ss_pred HHHhcCCCEEEecHHHHHH
Confidence 9999999999887664443
No 68
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=38.84 E-value=74 Score=28.55 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=54.5
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+..........+.... ...+++++....+-... +...+++++..|+..+..+ ....+.+...+++.++
T Consensus 26 ~~Ty~eL~~~~~~~A~~L~~~~---~~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~ 100 (511)
T 3e7w_A 26 SLTYQELWEQSDRAAAAIQKRI---SGEKKSPILVYGHMEPH--MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGA 100 (511)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTS---CSSSCCCEEEEESSCHH--HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTC
T ss_pred eeeHHHHHHHHHHHHHHHHHhc---CCCCCCeEEEEecCCHH--HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCC
Confidence 4788888776665555443211 24456777766654432 3334688888898887765 5788999999999999
Q ss_pred eEEeec
Q psy12107 157 TILFVV 162 (334)
Q Consensus 157 t~l~~~ 162 (334)
.+++..
T Consensus 101 ~~li~~ 106 (511)
T 3e7w_A 101 ELLIHA 106 (511)
T ss_dssp CEEEES
T ss_pred CEEEec
Confidence 998863
No 69
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=38.17 E-value=1.1e+02 Score=27.39 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=57.7
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+......+...+.. . ++|++...++-... +...+++++..|+..+..+. ...+.+...+++.++
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~------~-~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~ 96 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKA------Y-QQSRVGLYIDNSIQ--SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDV 96 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHT------T-CCSEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEHHHHHHHHHHHHHHHHH------c-CCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCC
Confidence 47888887777666665532 2 67888888876543 33447889999999988764 788999999999999
Q ss_pred eEEeech
Q psy12107 157 TILFVVP 163 (334)
Q Consensus 157 t~l~~~p 163 (334)
..++...
T Consensus 97 ~~li~~~ 103 (501)
T 3ipl_A 97 QLIFCTL 103 (501)
T ss_dssp CEEEESS
T ss_pred CEEEEcc
Confidence 9988653
No 70
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=35.77 E-value=1.3e+02 Score=26.97 Aligned_cols=76 Identities=9% Similarity=0.046 Sum_probs=54.1
Q ss_pred hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCC
Q psy12107 78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKP 156 (334)
Q Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~ 156 (334)
.+|.+.+..........+ ..++++...++-... +...+++++..|+..+.++ ....+.+...+++.++
T Consensus 48 ~~Ty~eL~~~~~~~A~~L---------~~~~~V~i~~~~~~~--~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~ 116 (505)
T 3nyq_A 48 SLTYAELAAAAGATAGRI---------GGAGRVAVWATPAME--TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAP 116 (505)
T ss_dssp EEEHHHHHHHHHHHHTTC---------C---CEEEECCSSHH--HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHHHhhc---------cCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCC
Confidence 478888887777666554 235677777665443 3334788888899888775 4788999999999999
Q ss_pred eEEeechH
Q psy12107 157 TILFVVPS 164 (334)
Q Consensus 157 t~l~~~p~ 164 (334)
..++..+.
T Consensus 117 ~~vi~~~~ 124 (505)
T 3nyq_A 117 SLVLAPPD 124 (505)
T ss_dssp SEEEECTT
T ss_pred CEEEECCc
Confidence 99988653
No 71
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=35.05 E-value=1.1e+02 Score=28.22 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=64.2
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
++.+|.+.- .-.+|.+.+......+...+... +..+++++...++-...+ ...+++++..|+..+
T Consensus 39 pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~----Gv~~gd~V~l~~~~s~~~--vva~lA~l~aG~~~v 103 (617)
T 3rg2_A 39 SDSIAVIDG---------ERQLSYRELNQAADNLACSLRRQ----GIKPGETALVQLGNVAEL--YITFFALLKLGVAPV 103 (617)
T ss_dssp CCSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEE
T ss_pred CCCeEEecC---------CceEeHHHHHHHHHHHHHHHHHc----CCCCCCEEEEECCCcHHH--HHHHHHHHhcCeEEc
Confidence 677776631 12378888877766666554332 267888888888765433 334788899999888
Q ss_pred EcC-CCCHHHHHHHHHHcCCeEEeech
Q psy12107 138 TIP-KFTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 138 ~~~-~~~~~~~~~~i~~~~~t~l~~~p 163 (334)
..+ ....+.+...+++.++..+....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 104 LALFSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred cCCccccHHHHHHHHhhcCceEEEecc
Confidence 665 46788899999999999988754
No 72
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=31.78 E-value=1.3e+02 Score=27.38 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCCCCch--hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107 58 PNDLAMLPYSSGTTGVPK--GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH 135 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK--~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~ 135 (334)
|+.+|++... +..+..+ .-.+|.+.+......+...+... .. ++|++...++-...+ ...+++++..|+.
T Consensus 34 p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~----g~-~gd~V~i~~~n~~~~--~~~~lA~~~~Gav 105 (562)
T 3ite_A 34 PEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHA----SL-HGRAIAVSLDRSLIA--FAIIVGIMKSGNT 105 (562)
T ss_dssp TTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHT----TC-SSCEEEEECCSCHHH--HHHHHHHHHTTCE
T ss_pred CCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhc----CC-CCCEEEEEeCCCHHH--HHHHHHHHHhCCE
Confidence 5667766432 2222221 13468888877666665544322 24 588888887765443 3347889999999
Q ss_pred EEEcCC-CCHHHHHHHHHHcCCeEEeech
Q psy12107 136 MITIPK-FTPETYIECVVKYKPTILFVVP 163 (334)
Q Consensus 136 ~~~~~~-~~~~~~~~~i~~~~~t~l~~~p 163 (334)
.+.++. ...+.+...+++.++..++...
T Consensus 106 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 106 YVPIEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred EEecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 888764 7889999999999999877653
No 73
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=30.74 E-value=1.8e+02 Score=22.35 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=54.6
Q ss_pred CceEEEecch-hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEeechH------HHHHHhcCCCCCcc
Q psy12107 107 QETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPS------LLLFLASHPAVTPE 178 (334)
Q Consensus 107 ~~~~l~~~p~-~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~l~~l~~~~~~~~~ 178 (334)
..+++.+.+- .|..|........-..|..++... ...++.+.+.++++++..+..... .+..+++..+...
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~- 167 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAG- 167 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTT-
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcC-
Confidence 3455555553 777887764444457788888665 467899999999999998865431 2333332211110
Q ss_pred ccccceeeeecCCCCCHHHH
Q psy12107 179 HLASIREVTCGAAPATKSLI 198 (334)
Q Consensus 179 ~~~~lr~v~~~G~~l~~~~~ 198 (334)
..+.++ +++||...+++..
T Consensus 168 ~~~~~~-v~vGG~~~~~~~~ 186 (210)
T 1y80_A 168 LRDRVK-VIVGGAPLSQDFA 186 (210)
T ss_dssp CGGGCE-EEEESTTCCHHHH
T ss_pred CCCCCe-EEEECCCCCHHHH
Confidence 012333 6778888886554
No 74
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=27.15 E-value=1.3e+02 Score=27.82 Aligned_cols=90 Identities=10% Similarity=-0.045 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI 137 (334)
Q Consensus 58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~ 137 (334)
|+.+|.+.- . -.+|.+.+......+...+... +..+++++...++-... +...+++++..|+..+
T Consensus 41 Pd~~Av~~~-~--------~~lTY~eL~~~a~~lA~~L~~~----Gv~~g~~V~i~~~~s~~--~vva~lailkaGa~~v 105 (620)
T 4dg8_A 41 PHREAIRDR-F--------GSVDYRQLLDSAEQLSDYLLEH----YPQPGVCLGVYGEYSRE--SITCLLAILLSGHHYL 105 (620)
T ss_dssp TTSEEEEET-T--------EEEEHHHHHHHHHHHHHHHHHH----CCSSCCEEEEESSSCHH--HHHHHHHHHHTTCEEE
T ss_pred CCCeEEEcC-C--------CcCcHHHHHHHHHHHHHHHHHc----CCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEE
Confidence 566776531 1 1378888777666655554332 25688888888876543 3334788999999988
Q ss_pred EcCC-CCHHHHHHHHHHcCCeEEeec
Q psy12107 138 TIPK-FTPETYIECVVKYKPTILFVV 162 (334)
Q Consensus 138 ~~~~-~~~~~~~~~i~~~~~t~l~~~ 162 (334)
.++. ...+.+...+++.++..+...
T Consensus 106 pld~~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 106 YIDLKQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp ECCTTSCHHHHHHHHHHHTEEEEEEC
T ss_pred eeCccChHHHHHHHHHhCCCcEEEec
Confidence 8865 677888899999999988743
No 75
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=24.90 E-value=3.8e+02 Score=24.27 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=41.1
Q ss_pred CCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCC-C---CHHHHHHHHHHcC-----CeEEeechHHHHHHhcCC
Q psy12107 106 SQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPK-F---TPETYIECVVKYK-----PTILFVVPSLLLFLASHP 173 (334)
Q Consensus 106 ~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~-~---~~~~~~~~i~~~~-----~t~l~~~p~~l~~l~~~~ 173 (334)
+--+++...|+.+...+.. .+..++..|.++++-+. . ....+.+++++.+ ++++.+.......|++++
T Consensus 162 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~p 239 (521)
T 4e4g_A 162 PVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTHP 239 (521)
T ss_dssp ECCEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTCT
T ss_pred CCcEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhCC
Confidence 3456777778755544332 35677889999998654 2 3455667777752 234444445557776654
No 76
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=24.89 E-value=2.4e+02 Score=26.09 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCceEEEecch-hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEeech---HH---HHHHhcCCCCCc
Q psy12107 106 SQETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVP---SL---LLFLASHPAVTP 177 (334)
Q Consensus 106 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p---~~---l~~l~~~~~~~~ 177 (334)
...+++.+.+- .|..|........-..|..++... ...++.+++.++++++.++.+.. .. +..+++..+...
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g 177 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQG 177 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcC
Confidence 34455555544 788887764444446788877654 47899999999999999886643 22 222222111111
Q ss_pred cccccceeeeecCCCCCHHHH
Q psy12107 178 EHLASIREVTCGAAPATKSLI 198 (334)
Q Consensus 178 ~~~~~lr~v~~~G~~l~~~~~ 198 (334)
. .++ |++||..++.+..
T Consensus 178 ~---~i~-ViVGGa~~~~~~a 194 (579)
T 3bul_A 178 F---TIP-LLIGGATTSKAHT 194 (579)
T ss_dssp C---CSC-EEEESTTCCHHHH
T ss_pred C---CCe-EEEEccccchhhh
Confidence 1 233 6788888887654
No 77
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=24.24 E-value=20 Score=28.37 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.1
Q ss_pred CCCCCCCchhhhhcchHHH
Q psy12107 67 SSGTTGVPKGVKLSHNNCA 85 (334)
Q Consensus 67 TSGTTG~PK~v~~t~~~~~ 85 (334)
+|+.|| ||||+--++.+.
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 567777 999999999887
No 78
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=20.87 E-value=4.5e+02 Score=23.45 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=50.9
Q ss_pred CCceEEEecchhhhhHH-HHHHHHHHHhCcEEEEcCC-CC---HHHHHHHHHHcC--C---eEEeechHHHHHHhcCCCC
Q psy12107 106 SQETVLSVLPFFHIYGF-NGILNVVMMYGMHMITIPK-FT---PETYIECVVKYK--P---TILFVVPSLLLFLASHPAV 175 (334)
Q Consensus 106 ~~~~~l~~~p~~~~~~~-~~~~~~~~~~G~~~~~~~~-~~---~~~~~~~i~~~~--~---t~l~~~p~~l~~l~~~~~~ 175 (334)
+--+++...|+.+.... ...+..++..|.++++-+. .. ...+.+++++.+ . +++.+-+.....|.+++
T Consensus 139 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~-- 216 (490)
T 3ju8_A 139 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAHR-- 216 (490)
T ss_dssp ECSEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTCT--
T ss_pred CCCEEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhCC--
Confidence 34567777787555433 2335677889999998664 22 345566676652 2 33334345666666554
Q ss_pred CccccccceeeeecCCCCCHHHHHHHHHHh
Q psy12107 176 TPEHLASIREVTCGAAPATKSLIDKFKQKV 205 (334)
Q Consensus 176 ~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~ 205 (334)
.++.|.+.| +..+.+.+.+..
T Consensus 217 ------~v~~V~fTG---S~~~g~~i~~~a 237 (490)
T 3ju8_A 217 ------GLDGLFFTG---SSRTGNLLHSQF 237 (490)
T ss_dssp ------TCSEEEEES---CHHHHHHHHHHT
T ss_pred ------CcCEEEEEC---cHHHHHHHHHHh
Confidence 355555555 445555555443
Done!