RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12107
(334 letters)
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 284 bits (728), Expect = 1e-92
Identities = 128/327 (39%), Positives = 169/327 (51%), Gaps = 42/327 (12%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQ-LVTSQPPDFQLPKI-SPNDLA 62
P L+ + L IV+ D I + + ++ P I +D A
Sbjct: 90 PDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTA 149
Query: 63 MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGF 122
L YSSGTTG+PKGV LSH N NL Q N D+S + VL+ LPF+H YG
Sbjct: 150 ALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNP----DSSNDVVLTFLPFYHAYGL 205
Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
L ++ G +I +PKF ET+++ + KYK T LF+VP + + LA P V L+S
Sbjct: 206 TTTLAS-LLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSS 264
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ 242
+R + GAAP +K L ++ +++ TI+QGYGMTET P T T + K GS G+
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNT--TIKQGYGMTETGPATTLTPP--GDEKPGSVGR 320
Query: 243 L-------------------------------VMLGYLKNEEATKETVDSEGWLHTGDVA 271
L +M GYL N EATKET+D +GWLHTGD+
Sbjct: 321 LVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIG 380
Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
Y+DEDG FYIVDR KELIK KG QV P
Sbjct: 381 YFDEDGNFYIVDRKKELIKYKGYQVPP 407
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 272 bits (698), Expect = 5e-88
Identities = 118/306 (38%), Positives = 162/306 (52%), Gaps = 41/306 (13%)
Query: 24 TIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
+++ D S I L+ + P+ + I +D+A LPYSSGTTG KGV L+H N
Sbjct: 126 VVLLDSADDGSAAI---DDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRN 182
Query: 84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT 143
N+ Q +V + ++ L VLP FHIYG IL ++ G ++ +P+F
Sbjct: 183 LIANVAQ-----LVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFD 237
Query: 144 PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ 203
E ++ + KYK T L VVP ++L L HP V L+S++++ GAAP K L + F+
Sbjct: 238 LEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRA 297
Query: 204 KVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL-------------------- 243
+ + + QGYGMTE+SP T + K GS G+L
Sbjct: 298 RF--PGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPN 355
Query: 244 -----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
VM GYL N EAT ET+D +GWLHTGD+ Y+DEDGY +IVDR KELIK K
Sbjct: 356 QPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYK 415
Query: 293 GNQVAP 298
G QVAP
Sbjct: 416 GFQVAP 421
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 222 bits (569), Expect = 4e-69
Identities = 96/288 (33%), Positives = 140/288 (48%), Gaps = 38/288 (13%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
F+ + S P ++SP+DLA+L Y+ GTTGVPKG L+H N N++Q V
Sbjct: 106 FEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIA--AWVKD 163
Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
+ ++ L+ LP FHI+G + + + G + +P F P ++ + +Y+ TI
Sbjct: 164 L---REGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIF 220
Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
VP+L L +HP +S+R G AP + ++F++K + +GYG+T
Sbjct: 221 PGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTG---APLVEGYGLT 277
Query: 220 ETSPCTLYTRFAIP-------------EAKL----------GSTGQL------VMLGYLK 250
ETSP T E K+ G G+L VM GY
Sbjct: 278 ETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGEVGELVVRGPQVMKGYWN 337
Query: 251 NEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
E T E + +GWL TGD+ Y DEDGYFYIVDR K++I V G V P
Sbjct: 338 RPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYP 384
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 221 bits (564), Expect = 9e-68
Identities = 103/293 (35%), Positives = 138/293 (47%), Gaps = 41/293 (13%)
Query: 40 FKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN 98
+ L P PD + P+DLA L Y+SGTTG+PKGV L+H N N I
Sbjct: 151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAG-----IAA 205
Query: 99 HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKP 156
+ T + VLS LP FHI+G L ++ G ++ + F PE + + KYK
Sbjct: 206 ALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKV 265
Query: 157 TILFVVPSLLLFLASHPAVTPEHLAS-IREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
T+L VP+ L L +P + L+S +R V G AP L+++F+++ I I +G
Sbjct: 266 TVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEER--FGPIAILEG 323
Query: 216 YGMTETSPCTLYTRFAIPEAKLGSTGQL------------------------------VM 245
YG+TETSP AK GS G+ VM
Sbjct: 324 YGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVM 383
Query: 246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GY EAT E D +GWL TGD+ Y DEDGY YIV R K+LI G + P
Sbjct: 384 KGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYP 436
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 217 bits (555), Expect = 1e-67
Identities = 89/328 (27%), Positives = 137/328 (41%), Gaps = 46/328 (14%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
+LL ++ L I+VG + + +L+ + P + P+DLA +
Sbjct: 79 DELLPKLLEVLLKLLVLLALIIVGDDGEGL--DLLDDELLAGASAEPPAPPVDPDDLAYI 136
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
Y+SGTTG PKGV L+H N T + VL +LP
Sbjct: 137 IYTSGTTGKPKGVMLTHRNLLALAAGLAE-------RFGLTPGDRVLLLLPLHFDGSVWE 189
Query: 125 ILNVVMMYGMHMITIPKFT--PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
I ++ G ++ +PKFT P ++ + KYK T+L+ VP+LL L P L+S
Sbjct: 190 IF-GPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKKYDLSS 248
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS--- 239
+R V G P L+ + +++ + + GYG TET+ PE K GS
Sbjct: 249 LRLVLSGGEPLPPELLRRLRERF--GGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGR 306
Query: 240 ---------------------------TGQLVMLGYLKNEEATKETVDSEGWL--HTGDV 270
G V GYL + E T E +GW TGD+
Sbjct: 307 PLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDL 366
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+DEDGY I+ R + +K++G ++ P
Sbjct: 367 GRWDEDGYLEILGRKDDQVKIRGERIEP 394
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 213 bits (544), Expect = 6e-65
Identities = 99/327 (30%), Positives = 145/327 (44%), Gaps = 50/327 (15%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFG--FKQLVTSQPPDFQLPKISPNDLA 62
+ + + I LP R IV G +++L+ + F P I ND A
Sbjct: 111 SEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAA 170
Query: 63 MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGF 122
+ Y+SGTTG PKGV LSH N ++ + + L ++P FH++ +
Sbjct: 171 AMLYTSGTTGHPKGVVLSHRNLFLHSLAV-------CAWLKLSRDDVYLVIVPMFHVHAW 223
Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
G+ + +M G + +F PE ++ + + T F VP++ L P +S
Sbjct: 224 -GLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSS 282
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF------------ 230
+R V G A +L+ +FK+K I + QGYGMTETSP
Sbjct: 283 LRLVIYGGAALPPALLREFKEKF---GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339
Query: 231 ----AIP--EAKL------------GSTGQLV------MLGYLKNEEATKETVDSEGWLH 266
+P EA++ G G+++ M GY EAT ET+D GWLH
Sbjct: 340 SAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLH 398
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
TGDV Y DEDGY YI DR K++I G
Sbjct: 399 TGDVGYIDEDGYLYITDRIKDVIISGG 425
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 212 bits (543), Expect = 1e-64
Identities = 113/298 (37%), Positives = 151/298 (50%), Gaps = 41/298 (13%)
Query: 36 NIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
F +L + + +ISP+D+ LPYSSGTTG+PKGV L+H ++ Q V +
Sbjct: 156 GCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 215
Query: 96 IVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155
N SD + +L VLP FHIY N +L + G ++ +PKF +E + ++K
Sbjct: 216 NPNLYFHSD---DVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHK 272
Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
TI VP ++L +A P V L+SIR V GAAP K L D F+ K+ + QG
Sbjct: 273 VTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNA--VLGQG 330
Query: 216 YGMTETSP----CTLYTRFAIPEAKLGSTGQLV--------------------------- 244
YGMTE P C + + P K GS G +V
Sbjct: 331 YGMTEAGPVLAMCLAFAKEPFP-VKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389
Query: 245 ----MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
M GYL + EAT T+D +GWLHTGD+ Y D+D +IVDR KELIK KG QVAP
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 447
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
QV YK++ V F+++IP+ P+GK+LR +L+
Sbjct: 501 QVVFYKRI-HKVFFVDSIPKAPSGKILRKDLR 531
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 203 bits (519), Expect = 5e-63
Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 46/275 (16%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNC---AVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
P+D A++ Y+SGTTG PKG L+H N ++ + + T + L +
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL----------TEGDRTLVPV 50
Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
P FH++G + + G ++ + KF P + + + + T L VP++ + L HP
Sbjct: 51 PLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPD 110
Query: 175 VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR----- 229
L+S+R G AP L+ + +++ +IT GYGMTETS T
Sbjct: 111 FDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITT--GYGMTETSGVGTQTSGDDPY 168
Query: 230 --------FAIP--EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEG 263
+P E K+ G G++ VM GY + EAT E +D++G
Sbjct: 169 EDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADG 228
Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
WLHTGD+ Y DEDGY IV R K++I G + P
Sbjct: 229 WLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYP 263
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 197 bits (504), Expect = 6e-61
Identities = 88/270 (32%), Positives = 123/270 (45%), Gaps = 40/270 (14%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
D A + Y+SGTTG PKGV LSH N N + T + +LSVLP FH+
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQA-------IGLTEGDVLLSVLPLFHV 53
Query: 120 YGFNGILNVVMMYGMHMITIPKF-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
G L ++ G ++ F P +++E + +Y+ T+LF VP+L LA
Sbjct: 54 VGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGY 113
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR--------- 229
L+S+R + G P + L+++F +R I +GYG+TETS T
Sbjct: 114 DLSSLRLLISGGEPLSPELLERF---EERPGAPILEGYGLTETSVVTSTNPDSELKKPGT 170
Query: 230 --FAIP------------EAKLGSTGQLV------MLGYLKNEEATKETVDSEGWLHTGD 269
+P G G+LV M GY N T +GW TGD
Sbjct: 171 VGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGD 230
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
+ Y DE+GY YI R+K+LIKV G V P
Sbjct: 231 LGYLDEEGYLYITGRSKDLIKVGGENVYPA 260
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 198 bits (505), Expect = 2e-59
Identities = 93/327 (28%), Positives = 149/327 (45%), Gaps = 44/327 (13%)
Query: 6 QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFG--FKQLVTSQPPDFQLPKISPNDLAM 63
L V LP ++ E D F + + P + P++ P+D+A
Sbjct: 111 LFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVAD 170
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQ-CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGF 122
+ ++SGTTG PKG L+H N + + T + L+ PFFH++G+
Sbjct: 171 ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGL--------TEGDRYLAANPFFHVFGY 222
Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
+N +M G ++ +P F P+ + + T+L P++ L HP + E L+S
Sbjct: 223 KAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSS 282
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF------------ 230
+R GAA +L+++F+ ++ + + GYG++E S T + R
Sbjct: 283 LRLAVTGAASMPVALLERFESELGVD--IVLTGYGLSEASGVTTFNRLDDDRKTVAGTIG 340
Query: 231 -AIP------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVA 271
AI E +G G+L VM GY + EAT +D++GWLHTGD+
Sbjct: 341 TAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLG 400
Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
DE+GY YIVDR K++ V G V P
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYP 427
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 188 bits (480), Expect = 3e-57
Identities = 91/271 (33%), Positives = 124/271 (45%), Gaps = 46/271 (16%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFH 118
D A++ Y+SGTTG PKGV L+H N N VN + D S V L P +H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLAN--------AVNALAGVDLSPGDVYLLAAPLYH 53
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
G +L + G ++ PKF PE ++ + +++ T F+VP++ L P
Sbjct: 54 AAGGLFLLPALAAGGTVVLM-PKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY 112
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQRE-DITIRQGYGMTETSPCTLYTRFAIPEAKL 237
L+S+R + GAAP + + K+ + QGYGMTET P T KL
Sbjct: 113 DLSSLRLIIYGAAP----MPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKL 168
Query: 238 GSTGQ------------------------------LVMLGYLKNEEATKETVDSEGWLHT 267
GS G+ VM GY EAT E + +GWLHT
Sbjct: 169 GSVGRPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHT 227
Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GD+ Y DEDGY YIVDR K++I G + P
Sbjct: 228 GDLGYLDEDGYLYIVDRKKDMIISGGENIYP 258
Score = 37.4 bits (88), Expect = 0.006
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
++A YK V+F++ +PRN +GK+L+ EL+
Sbjct: 312 RLAGYKVPKS-VEFVDELPRNASGKILKRELR 342
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 185 bits (471), Expect = 9e-55
Identities = 86/275 (31%), Positives = 125/275 (45%), Gaps = 46/275 (16%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
P+DLA L Y+SGTTG PKGV L+H N ++ IP + + VLS LP
Sbjct: 86 KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAA-----LLEVIPL--SPGDRVLSFLPL 138
Query: 117 FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL--LFLASHPA 174
H++ + + G + +PET +E + + +PT+ F VP + ++
Sbjct: 139 AHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAK 196
Query: 175 VTPEH------------LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS 222
V +R G AP +++ F + I I +GYG+TETS
Sbjct: 197 VAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF----RALGIPILEGYGLTETS 252
Query: 223 PCTLYTRF----------AIP--EAKLGSTGQL------VMLGYLKNEEATKETVDSEGW 264
R +P E ++ G++ VM GY KN EAT E +D +GW
Sbjct: 253 GVATVNRPGDIRIGTVGKPLPGVEVRIAEDGEILVRGPNVMKGYYKNPEATAEALDEDGW 312
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVAP 298
LHTGD+ DEDG+ I DR K+LI G +AP
Sbjct: 313 LHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAP 347
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 172 bits (438), Expect = 3e-50
Identities = 73/272 (26%), Positives = 126/272 (46%), Gaps = 42/272 (15%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+D+A++PY+SGTTG+PKG +H + + T +L+ LP FH
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLAT---AAASAAWSGL----TPDSVLLAFLPLFH 136
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+ G G +N + G ++ + ++ E + +Y+ T + ++++ L +HP
Sbjct: 137 VAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADY 196
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR--------F 230
L+S++ V G A ++ ++ K + +GYG+TET CT +
Sbjct: 197 DLSSLKVVGGGGAALPPAVAERLKA---LTGLLYEEGYGLTETHTCTHFNPPDRPKPQCL 253
Query: 231 AIP----EAK-----------LGSTGQLV------MLGYLKNEEATKET---VDSEGWLH 266
IP +A+ G G++V GY EAT E+ +D + +
Sbjct: 254 GIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFR 313
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+ Y DE+GYF+ +DR K +I V G +V P
Sbjct: 314 TGDLGYIDEEGYFFFLDRVKRMINVSGYKVWP 345
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 170 bits (432), Expect = 1e-48
Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 70/338 (20%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEH---DKSKNIFGFKQLVTSQPPDFQLPKISPNDL 61
L + I LP + +V N++ +++L+ + P+++ P++ N
Sbjct: 105 DDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEWPELDENTA 164
Query: 62 AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH---IPTSD----TSQETVLSVL 114
A L Y+SGTTG PKGV SH +V H D + +TVL V+
Sbjct: 165 AGLCYTSGTTGNPKGVVYSHR------------SLVLHTLASALPDSLGLSESDTVLPVV 212
Query: 115 PFFHIYGFNGILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHP 173
P FH+ + G+ M G ++ P + ++ + + K T+ VP++ L L ++
Sbjct: 213 PMFHVNAW-GLPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYL 271
Query: 174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF--- 230
+ L+S+R V G + +SLI+K +++ + + +GMTETSP +R
Sbjct: 272 EANGKDLSSLRRVVVGGSALPRSLIEKLEER----GVEVIHAWGMTETSPLGTVSRLKPH 327
Query: 231 ---AIPEAKL-----------------------------GSTGQLVMLG------YLKNE 252
E KL + G+LV+ G Y K+
Sbjct: 328 LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDP 387
Query: 253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK 290
E T+E + +GW TGDVA DEDGY I DR K++IK
Sbjct: 388 EKTEE-LTRDGWFRTGDVAVIDEDGYIQITDRAKDVIK 424
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 167 bits (425), Expect = 2e-47
Identities = 106/299 (35%), Positives = 152/299 (50%), Gaps = 36/299 (12%)
Query: 32 DKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC 91
K F +L+ P I +D+A + YSSGTTG KGV L+H N +E
Sbjct: 171 SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELF 230
Query: 92 VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECV 151
V + + S L+ LP FHIYG + + ++ G ++ + +F ++ +
Sbjct: 231 VRFEASQYEYPG--SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVI 288
Query: 152 VKYKPTILFVVPSLLLFLA-SHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
++K T VVP +L+ L V E L S+++V+CGAAP + I F Q + D
Sbjct: 289 DRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDF 348
Query: 211 TIRQGYGMTE----------TSPCTLYTRFAI--P--EAKL-----------GSTGQL-- 243
QGYGMTE T + Y+ + P +AK+ G+ G+L
Sbjct: 349 I--QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWI 406
Query: 244 ----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
VM GYL N +AT+ T+D +GWL TGD+AY+DEDGY YIVDR KE+IK KG Q+AP
Sbjct: 407 QGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAP 465
Score = 45.2 bits (107), Expect = 3e-05
Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
QVAPYKK+ V F+++IP++PAGK+LR ELK
Sbjct: 519 QVAPYKKVRK-VVFVQSIPKSPAGKILRRELK 549
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 163 bits (415), Expect = 1e-45
Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 79/326 (24%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
L+ S + ++ P+DLA + Y+SGTTG PKGV L+H N + I
Sbjct: 172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAG-----IDEV 226
Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
+P + VLS LP HI+ + + G+ + K P T +E + + +PT++
Sbjct: 227 LPPI-GPGDRVLSFLPLAHIFERAFEGGLALYGGV--TVLFKEDPRTLLEDLKEVRPTVM 283
Query: 160 FVVPSL--LLFLASHPAV-------------------------------TPEHLAS---- 182
VP + ++ V L +
Sbjct: 284 IGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLV 343
Query: 183 ---IREVT--------CGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
IR+ G AP + + F + + I I +GYG+TETS
Sbjct: 344 FRKIRDALGGRIRYALSGGAPLSPE-LLHFFRSL---GIPILEGYGLTETSAVVSVNPPD 399
Query: 232 ----------IP--EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
+P E K+ G++ VM GY KN EAT E +GW TGD+
Sbjct: 400 RFVLGTVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGEL 459
Query: 274 DEDGYFYIVDRTKELIKV-KGNQVAP 298
DEDGY I R KELIK+ G +AP
Sbjct: 460 DEDGYLVITGRKKELIKLSNGKNIAP 485
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 154 bits (390), Expect = 1e-42
Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 49/282 (17%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC---VHPDIVNHIPTSDTSQETVLS 112
I DL LP+SSGTTG+ KGV L+H N NL V P+++ + T L
Sbjct: 181 ILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVT--------LG 232
Query: 113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH 172
++PFFHIYG GI + ++ + +F T++ ++ + + +VP ++L L +
Sbjct: 233 LIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN 292
Query: 173 PAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY--- 227
P V L+ ++ + AAP L+ F+ K + +++ YG+TE S TL
Sbjct: 293 PIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKF--PGVQVQEAYGLTEHSCITLTHGD 350
Query: 228 ----------------------------TRFAIPEAKLGST---GQLVMLGYLKNEEATK 256
T ++P+ G Q VM GY N+E T
Sbjct: 351 PEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETD 410
Query: 257 ETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T+D +GWLHTGD+ Y D+DG +IVDR KELIK KG QVAP
Sbjct: 411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP 452
Score = 33.4 bits (76), Expect = 0.17
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 283 DRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
+ ++++ VA YKK+ V+F+++IP++ +GK++R LK
Sbjct: 494 ESEEDILNFVAANVAHYKKVRV-VQFVDSIPKSLSGKIMRRLLK 536
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 154 bits (390), Expect = 2e-42
Identities = 97/273 (35%), Positives = 136/273 (49%), Gaps = 45/273 (16%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
NDLA+L Y+ GTTG PKGV L+H N N V + +E VL VLPFFH
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ-----WLYNCKEGEEVVLGVLPFFH 260
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+YG ++N+ +M G M+ IPKF + E + K+K T+ P++ + L + P +
Sbjct: 261 VYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEY 320
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDIT---IRQGYGMTETSPCT---------- 225
++SIR G+AP + +KF E +T + +GYG+TE+SP T
Sbjct: 321 DISSIRACISGSAPLPVEVQEKF------ETVTGGKLVEGYGLTESSPVTHSNFLWEKRV 374
Query: 226 -----------------LYTRFAIPEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWL 265
L T A+P ++G G +M GY E T V +GWL
Sbjct: 375 PGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETA-AVLQDGWL 433
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
HTGDV Y DEDG+FY+ DR K++I G V P
Sbjct: 434 HTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYP 466
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 149 bits (378), Expect = 4e-41
Identities = 87/277 (31%), Positives = 124/277 (44%), Gaps = 43/277 (15%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
L P+D A++ ++SG+ G+PKGV LSH N N++Q I I + ++ +
Sbjct: 137 LFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQ-----IAAVIDLNT--EDVL 189
Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT-PETYIECVVKYKPTILFVVPSLLLFL 169
L LP FH +G L + ++ G+ ++ P + E + YK TIL P+ L
Sbjct: 190 LGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGY 249
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP---CTL 226
A PE +S+R V GA ++ + F++K I I +GYG TE SP
Sbjct: 250 AR--NAHPEDFSSLRLVVAGAEKLPEATRELFEEKFG---IRILEGYGATECSPVISVNT 304
Query: 227 YTRF-------AIP-------------EAKLGSTGQL------VMLGYLKNEEATKE-TV 259
+P E +G G L VM GYL NEE T E V
Sbjct: 305 PMGNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEV 364
Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+GW TGD+ DEDG+ IV R K K+ G V
Sbjct: 365 LGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMV 401
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 152 bits (387), Expect = 5e-41
Identities = 90/289 (31%), Positives = 126/289 (43%), Gaps = 53/289 (18%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
P P+D A + +SSG+ G PKGV LSH+N N+EQ D+ N + + +
Sbjct: 774 LYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS--DVFNL-----RNDDVI 826
Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYI-ECVVKYKPTILFVVPSLLLFL 169
LS LPFFH +G L + ++ G+ ++ P T I + V K++ TIL P+ L
Sbjct: 827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLY 886
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP------ 223
+ + P AS+R V GA + D F++K I I +GYG TETSP
Sbjct: 887 LRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVASVNL 943
Query: 224 ----CTLYTR----------FAIP-------------EAKLGSTGQL------VMLGYLK 250
+ R +P E G G + VM GYL
Sbjct: 944 PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLG 1003
Query: 251 NEEATKE---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
+ E T E +D GW TGD + DEDG+ I DR K+ G V
Sbjct: 1004 DPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMV 1052
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 146 bits (371), Expect = 1e-40
Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 43/270 (15%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
D A + Y+SGTTG PKGV L+H + +L+ LP FHI
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARL-------LGLRPDDVLLTPLPLFHI 134
Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH 179
+ ++ G ++ +P+F+ + + V K+ T+ ++ ++ L P +
Sbjct: 135 NAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDR 194
Query: 180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------ 233
+R AP ++ F++ R + + +GYGMTET + P
Sbjct: 195 DHPLRF--VFGAPLPAAIWPAFEE---RFGVKLVEGYGMTETGVPIIAPGDPAPPGSCGR 249
Query: 234 -----EAKL----------GSTGQLV---------MLGYLKNEEATKETVDSEGWLHTGD 269
E ++ G G+LV GY EAT + GW HTGD
Sbjct: 250 PRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWR-NGWFHTGD 308
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
DEDG+ Y VDR K+ I+ +G ++ Y
Sbjct: 309 RGRRDEDGFLYFVDRKKDAIRRRGENISSY 338
Score = 32.2 bits (74), Expect = 0.35
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 298 PYKKLAGGVKFLETIPRNPAGKVLRNELK 326
PY + ++F++ +P+ P K+ + EL+
Sbjct: 393 PYFMVPRYIEFVDELPKTPTEKIQKAELR 421
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 142 bits (360), Expect = 1e-39
Identities = 78/275 (28%), Positives = 115/275 (41%), Gaps = 45/275 (16%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
DLA + Y+SG+TG PKGV LSH N I ++ T + +L+VLPF
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGAR-----SIAQYL--ELTEDDRILAVLPFSFD 55
Query: 120 YGFNGILNVVMMYGMHMITIPKFT-PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
YG + L G ++ +F P ++ + K + T VP+ L + E
Sbjct: 56 YGLS-QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLARE 114
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------LYTR--- 229
S+R +T I + ++ + YG+TE T L R
Sbjct: 115 DFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSM--YGLTEAFRSTYLPPEELDRRPDS 172
Query: 230 --FAIPEAKL------------GSTGQLV------MLGYLKNEEATKETVDS-----EGW 264
AIP +L G G+LV M GY + EAT E + E
Sbjct: 173 IGKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIV 232
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
L+TGD+ DE+GY Y V R ++IK +G +V+P
Sbjct: 233 LYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPT 267
Score = 30.3 bits (69), Expect = 1.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 306 VKFLETIPRNPAGKVLRNELK 326
+ F++++P+N GKV R+ L+
Sbjct: 330 IVFVDSLPKNANGKVDRSALR 350
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 141 bits (359), Expect = 1e-39
Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 47/276 (17%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD--TSQETVLSVLP 115
P+D A++ ++SGTTG PKGV L+H N + +I S T + L+V+P
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLAS---------ARNIAKSHKLTPSDRCLNVMP 51
Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
FHI+G L ++ G ++ PKF+ + + + KY+ T VP++ L
Sbjct: 52 LFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKP 111
Query: 176 TPEH-LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE 234
P +R + +AP +++D+ + +R + + + YGMTE +
Sbjct: 112 NPGKPPPRLRFIRSASAPLPPAVLDRLE---KRFGVPVLEAYGMTEAAHQIASNPLPPLV 168
Query: 235 AKLGSTGQL-----------------------------VMLGYLKNEEATKE-TVDSEGW 264
K GS G+ V GYL N EA +E D GW
Sbjct: 169 RKPGSVGRPAGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRD--GW 226
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
TGD+ Y DEDGY ++ R KELI G +++P +
Sbjct: 227 FRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPRE 262
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 145 bits (369), Expect = 2e-39
Identities = 89/300 (29%), Positives = 130/300 (43%), Gaps = 56/300 (18%)
Query: 40 FKQLVTSQPPDF----QLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
++ LV + P+ +P+D+A++ Y+SGTTG PKG +L+H N N Q
Sbjct: 196 WETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA-- 253
Query: 96 IVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155
+P E VL+ LP FH YG L + + G ++ +P + ++ + K+
Sbjct: 254 ---WVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP 310
Query: 156 PTILFVVPSLLLFLASHPAVTPEH---LASIREVTCGAAPATKSLIDKFKQKVQREDIT- 211
PT L VP L +A E L+ +R GA S ++ + E +T
Sbjct: 311 PTWLPGVPPLYEKIA---EAAEERGVDLSGVRNAFSGAMALPVSTVELW------EKLTG 361
Query: 212 --IRQGYGMTETSPCTL-----------YT---------RFAIPE-----AKLGSTGQL- 243
+ +GYG+TETSP + Y R PE G G+L
Sbjct: 362 GLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELL 421
Query: 244 -----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
V GY E T ++ +GW TGDV +EDG+ IVDR KELI G V P
Sbjct: 422 VRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYP 480
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 141 bits (359), Expect = 1e-38
Identities = 70/264 (26%), Positives = 104/264 (39%), Gaps = 45/264 (17%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNN-CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
P+D+A+L Y+SGTTG PKGV +HN A + T + VL P
Sbjct: 92 PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGL--------TPDDVVLMPSPL 143
Query: 117 FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT 176
HI GF L + ++ G ++ ++ P +E + ++ T L L +
Sbjct: 144 AHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAA 203
Query: 177 PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAK 236
L S+R CG AP + L + + + + YGMTE P P+ K
Sbjct: 204 GPDLPSLRVFLCGGAPVPRELARRAA---EALGAKVVRAYGMTEV-PLVTVGTPDDPDDK 259
Query: 237 LGST-------------------------GQL------VMLGYLKNEEATKETVDSEGWL 265
+T G+L + LGYL + T E +GW
Sbjct: 260 RAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNT-EAFTDDGWF 318
Query: 266 HTGDVAYYDEDGYFYIVDRTKELI 289
TGD+ D DGY I R K++I
Sbjct: 319 RTGDLGRLDADGYLRITGRKKDII 342
Score = 28.0 bits (63), Expect = 7.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 309 LETIPRNPAGKVLRNEL 325
++ +PR P+GKV + EL
Sbjct: 419 VDALPRTPSGKVQKFEL 435
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 142 bits (361), Expect = 1e-38
Identities = 92/314 (29%), Positives = 127/314 (40%), Gaps = 61/314 (19%)
Query: 31 HDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90
+ K+ + + L+ + P P P DLA + Y+SGTTG PKGV LS A +
Sbjct: 109 YSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQG 168
Query: 91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTP--ETYI 148
+ I T + +LS LP HI + + G + F +T+
Sbjct: 169 -----TIEII--GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVF----FVESLDTFA 217
Query: 149 ECVVKYKPTILFVVPSL-LLFLASHPAVTPEH------------------------LASI 183
+ + +PT+ F VP L F A P L
Sbjct: 218 ADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQA 277
Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTLYTRF---------AIP 233
R GAAP +LI ++ + + I +GYGMTE + TL IP
Sbjct: 278 RLAGSGAAPMPPALIAWYR----KLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKPIP 333
Query: 234 --EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT 285
E K+ G++ +M GY K+ E T E +GWLHTGD DEDG+ I R
Sbjct: 334 GVELKISEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRV 393
Query: 286 KELIKV-KGNQVAP 298
KEL K KG VAP
Sbjct: 394 KELFKTSKGKYVAP 407
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 139 bits (353), Expect = 3e-37
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 58/282 (20%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD-IVNH------IPTSDTSQET 109
P+DLA+LPY+SGTTGVPKG C+H V + ++ T +
Sbjct: 188 GPDDLAVLPYTSGTTGVPKG--------------CMHTHRTVMANAVGSVLWSNSTPESV 233
Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL-F 168
VL+VLP FH+ G +N + G ++ +P++ E + +Y+ T +P++++ F
Sbjct: 234 VLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDF 293
Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT 228
LAS P + L+S+R + G A +++ ++ K + + +GYG+TET T
Sbjct: 294 LAS-PGLAERDLSSLRYIGGGGAAMPEAVAERLK---ELTGLDYVEGYGLTETMAQTHSN 349
Query: 229 RFA--------IP---------------EAKLGSTGQL------VMLGYLKNEEATKE-- 257
IP E G G++ V GY EAT E
Sbjct: 350 PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF 409
Query: 258 -TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+D + + TGD+ DE+GYF+I DR K +I G +V P
Sbjct: 410 IEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWP 451
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 136 bits (346), Expect = 6e-37
Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 51/276 (18%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHP-DIVNHIPTSDTSQETVLSVLPFFH 118
D A++ Y+SGTTG PKGV L+H N A N V T+ + +L LP H
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW--------TASDVLLHALPLHH 140
Query: 119 IYG-FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP--TILFVVPSLLLFLASHP-- 173
++G FN L+ + G + +P+F P+ ++ P T+ VP++ L H
Sbjct: 141 VHGLFNA-LHCPLWAGASVEFLPRFDPQE--RDALRLLPRITVFMGVPTIYTRLLEHYEF 197
Query: 174 -AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-----PCTLY 227
++R G+A +++++++ R T+ + YGMTET P
Sbjct: 198 DDAAAAAARNLRLFVSGSAALPVPVLERWEE---RTGHTLLERYGMTETGMALSNPLDGE 254
Query: 228 TR-----FAIP--EAKL-----------GSTGQL------VMLGYLKNEEATKETVDSEG 263
R +P E ++ G G++ V Y EAT E +G
Sbjct: 255 RRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDG 314
Query: 264 WLHTGDVAYYDEDGYFYIVDRTKEL-IKVKGNQVAP 298
W TGDV DEDGY+ I+ R + IK G +V+
Sbjct: 315 WFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSA 350
Score = 30.7 bits (70), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 297 APYKKLAGGVKFLETIPRNPAGKVLR 322
APYK V ++ +PRN GKV +
Sbjct: 406 APYKIPKR-VIVVDELPRNAMGKVQK 430
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 137 bits (348), Expect = 7e-37
Identities = 97/333 (29%), Positives = 148/333 (44%), Gaps = 71/333 (21%)
Query: 6 QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLP 65
QL + K T +F ++ G ++ + G K+ Q +F L +++A +
Sbjct: 94 QLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEAEIQE-EFDL-----DEVATIM 147
Query: 66 YSSGTTGVPKGVKLSHNN-------CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
Y+SGTTG PKGV ++ N A+NL T + L+ +P FH
Sbjct: 148 YTSGTTGKPKGVIQTYGNHWWSAVGSALNL--------------GLTEDDCWLAAVPIFH 193
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
I G + ++ V +YGM ++ + KF E + + TI+ VV ++L L E
Sbjct: 194 ISGLSILMRSV-IYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLL---ERLGE 249
Query: 179 HL--ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--CTLYTRFAIPE 234
+S R + G PA K L+++ K+K I + Q YGMTET+ TL A+
Sbjct: 250 GTYPSSFRCMLLGGGPAPKPLLEQCKEK----GIPVYQSYGMTETASQIVTLSPEDAL-- 303
Query: 235 AKLGSTGQ-----------------------------LVMLGYLKNEEATKETVDSEGWL 265
KLGS G+ V GYL E+AT+ET GW
Sbjct: 304 TKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQD-GWF 362
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+ Y DE+G+ Y++DR +LI G + P
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLIISGGENIYP 395
Score = 31.9 bits (73), Expect = 0.54
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 308 FLETIPRNPAGKVLRNELK 326
F+E +PRN +GK+LR+ELK
Sbjct: 459 FVEELPRNASGKLLRHELK 477
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 136 bits (345), Expect = 4e-36
Identities = 109/343 (31%), Positives = 161/343 (46%), Gaps = 59/343 (17%)
Query: 4 IPQLLEVGTKIGATLPNFRG----TIVVGGEHDKSKNI---------FGFKQ-LVTSQPP 49
I L+E K+G LP +G T+V DK K + FKQ L +
Sbjct: 145 IEYLIEA--KMGDLLPAAKGWLVNTVV-----DKVKKMVPAYHLPQAVPFKQALRQGRGL 197
Query: 50 DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ---CVHPDIVNHIPTSDTS 106
+ + +D+A+L Y+ GTTG+ KG L+H N N+ Q C+ + P
Sbjct: 198 SLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEG 257
Query: 107 QETVLSVLPFFHIYGFNGILNVVMMYGMH--MITIPKFTPETYIECVVKYKPTILFVVPS 164
QE +++ LP +HIY F +M+ G H +IT P+ P +I+ + K++ + L + +
Sbjct: 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIP-GFIKELGKWRFSALLGLNT 316
Query: 165 LLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP- 223
L + L HP ++++ G K+ ++++Q TI +GYG+TETSP
Sbjct: 317 LFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT---GCTIVEGYGLTETSPV 373
Query: 224 -CT-LYTRFA------IP--------------EAKLGSTGQL------VMLGYLKNEEAT 255
T Y A IP E LG G+L VM GY + EAT
Sbjct: 374 ASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEAT 433
Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
E +D+EGW TGD+A D DG+ IVDR K+LI V G V P
Sbjct: 434 AEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYP 476
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 132 bits (335), Expect = 2e-35
Identities = 80/280 (28%), Positives = 116/280 (41%), Gaps = 64/280 (22%)
Query: 42 QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN-------CAVNLEQCVHP 94
Q + PD A + ++SG+TG PK V + N A NL + P
Sbjct: 67 QQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL--GLTP 117
Query: 95 DIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY 154
D L LP FH+ G I+ ++ G ++ KF E E + +
Sbjct: 118 DDNW------------LLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFDAEAIAEALENH 164
Query: 155 KPTILFVVPSLLL-FLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR 213
T + +VP+ L L S A +S+R V G AP SL+++ +Q+ I +
Sbjct: 165 GVTHISLVPTQLQRLLESLGARWL---SSLRAVLLGGAPIPPSLLEQARQR----GIPLY 217
Query: 214 QGYGMTETSP--CTLYTRFAIPEAKLGSTGQL----------------------VMLGYL 249
YGMTET+ TL + AKLGS G+ + LGYL
Sbjct: 218 PTYGMTETASQVATL--KPDDFLAKLGSVGKPLPGRELRIVNPQDGEILVRGPSLFLGYL 275
Query: 250 KNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
T D +GW HTGD+ Y D +GY Y++ R +LI
Sbjct: 276 PQGGLTPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 132 bits (334), Expect = 1e-34
Identities = 90/338 (26%), Positives = 141/338 (41%), Gaps = 57/338 (16%)
Query: 4 IPQLLE--VGTKIGATLPNFRGTIVVGGEHDKS----KNIFGFKQLVTSQPPDFQLPKIS 57
+P L E G LP RG + + + + V+ + + +
Sbjct: 140 LPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLD 199
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH-----IPTSDTSQETVLS 112
+D + Y+SGTTG PKG LSH+N I+N+ T + +
Sbjct: 200 RDDPINIQYTSGTTGFPKGATLSHHN------------ILNNGYFVAESLGLTEHDRLCV 247
Query: 113 VLPFFHIYGFNGILNVVMMYGMHMIT-IPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
+P +H +G M G ++ F P ++ V + + T L+ VP++ +
Sbjct: 248 PVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELD 307
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
HP L+S+R AP ++ + ++ ++ I YGMTETSP +L T A
Sbjct: 308 HPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQI--AYGMTETSPVSLQTTAA 365
Query: 232 IP---------------EAKL----------GSTGQL------VMLGYLKNEEATKETVD 260
E K+ G G+L VM GY N EAT E++D
Sbjct: 366 DDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESID 425
Query: 261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+GW+HTGD+A DE GY IV R+K++I G + P
Sbjct: 426 EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYP 463
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 132 bits (333), Expect = 1e-34
Identities = 84/275 (30%), Positives = 130/275 (47%), Gaps = 37/275 (13%)
Query: 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
+I P+D+A L Y+ GTTGV KG L+H N N++Q + + E V++ L
Sbjct: 204 QIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQ--WLAGTGKLEEGCEVVITAL 261
Query: 115 PFFHIYGFNGILNVVMMYG--MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH 172
P +HI+ V M G H+I+ P+ P +++ + K + T V +L L +
Sbjct: 262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMP-GFVKELKKTRFTAFTGVNTLFNGLLNT 320
Query: 173 PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI 232
P +S++ G +S+ +++KQ +T+ + YG+TETSP +
Sbjct: 321 PGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAACINPLTL 377
Query: 233 PEAK-----------------------LGSTGQL------VMLGYLKNEEATKETVDSEG 263
E +G G+L VM GY K E T + +D++G
Sbjct: 378 KEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437
Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
WLHTGD+A DE G+ YIVDR K++I V G V P
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYP 472
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 132 bits (333), Expect = 2e-34
Identities = 87/279 (31%), Positives = 129/279 (46%), Gaps = 46/279 (16%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
P++ P DLA L Y+ GTTGV KG L+H N NLEQ + P +E V++
Sbjct: 201 PELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAK----AAYGPLLHPGKELVVTA 256
Query: 114 LPFFHIYGF--NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
LP +HI+ N +L + + +IT P+ P E + KY T + V +L L +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE-LKKYPFTAITGVNTLFNALLN 315
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT---IRQGYGMTETSP---CT 225
+ +S++ G +++ +++ +T + +GYG+TE SP
Sbjct: 316 NEEFQELDFSSLKLSVGGGMAVQQAVAERW------VKLTGQYLLEGYGLTECSPLVSVN 369
Query: 226 LYTR--------FAIP------------EAKLGSTGQL------VMLGYLKNEEATKETV 259
Y +P E G G+L VMLGY + EAT E V
Sbjct: 370 PYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDE-V 428
Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+GWL TGD+A DE+G+ IVDR K++I V G V P
Sbjct: 429 IKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYP 467
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 131 bits (332), Expect = 2e-34
Identities = 78/303 (25%), Positives = 108/303 (35%), Gaps = 67/303 (22%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
+ + V F+ + +D L Y+SGTTG PKG+ SH V
Sbjct: 152 YDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLL 211
Query: 94 PDIVNHIPTSDTSQETVLSVLPFF---HIYGFNGILN----VVMMYGMHMITIPKFTPET 146
P +SD P + Y L V+ G P ++PE
Sbjct: 212 PGDR-FWNSSD----------PGWIYGLWYSVFSPLASGATTVLYDGR-----PFYSPER 255
Query: 147 YIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQ 206
E + KYK TI P+ L L P L+S+R + P + F +
Sbjct: 256 LWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL- 314
Query: 207 REDITIRQGYGMTETSPCTLYTRFAIPEAKLGS-----------------------TGQL 243
+ I YG TET + R P K GS G+L
Sbjct: 315 --GVWILDIYGQTETGMGFIAGR---PPVKNGSSGLPLPGYAVRRVDDEGNPVPPGVGEL 369
Query: 244 V--------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
V L Y + E KE W TGD A DEDGYF++ R+ ++IKV G +
Sbjct: 370 VVRLPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKR 428
Query: 296 VAP 298
+ P
Sbjct: 429 IGP 431
Score = 29.2 bits (66), Expect = 4.0
Identities = 8/41 (19%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
+E+ + + P+ ++F++ +P+ +GK+ R L+
Sbjct: 478 EEIRRHVARNIGPHAIPRK-IRFVDELPKTASGKIQRRLLR 517
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 129 bits (325), Expect = 2e-33
Identities = 85/274 (31%), Positives = 129/274 (47%), Gaps = 40/274 (14%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
+D+A+L Y+ GTTGV KG L+H N N+ QC + +++ + E +++ LP
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQC-RALMGSNL---NEGCEILIAPLP 259
Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTP---ETYIECVVKYKPTILFVVPSLLLFLASH 172
+HIY F +M+ G H I I P ++ + K+K + + +L + L ++
Sbjct: 260 LYHIYAFTFHCMAMMLIGNHNILIS--NPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317
Query: 173 PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF-- 230
A ++++ G + +++K+ I +GYGMTETSP
Sbjct: 318 EAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCA---ICEGYGMTETSPVVSVNPSQA 374
Query: 231 ------AIP--------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGW 264
IP E LG G+L VM GY + EAT E +DS+GW
Sbjct: 375 IQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGW 434
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
L TGD+A EDGY IVDR K++I V G V P
Sbjct: 435 LKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYP 468
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 125 bits (317), Expect = 2e-32
Identities = 90/326 (27%), Positives = 134/326 (41%), Gaps = 48/326 (14%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
+L EV P+ R IVVGG + + + QL+ + + + S +D+A
Sbjct: 110 EELWEVLKPALQKDPHLRHVIVVGGAGPGALS---YAQLIATAAEELEAAATSADDMAFW 166
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
YSSG+TG PKGV H++ V E V I T + V S F YG
Sbjct: 167 LYSSGSTGRPKGVVHLHHDMLVTAEAYAKN--VLGI----TEDDVVFSAAKLFFAYGLGN 220
Query: 125 ILNVVMMYGMHMITIPKF-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
L + G + +P+ TP+ + +YKPT+ F VP+L + + P L+S+
Sbjct: 221 GLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSL 280
Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA-KLGSTGQ 242
R + ++K + + I G G TE L R P A K G++G+
Sbjct: 281 RLCVSAGEALPAEIGYRWK---ELFGLEILDGIGSTEMLHIFLSNR---PGAVKYGTSGK 334
Query: 243 LV------------------------------MLGYLKNEEATKETVDSEGWLHTGDVAY 272
V GY E T+ET E W TGD Y
Sbjct: 335 PVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGE-WTRTGDKYY 393
Query: 273 YDEDGYFYIVDRTKELIKVKGNQVAP 298
DEDGY++ R+ +++KV G V+P
Sbjct: 394 RDEDGYYWYCGRSDDMLKVSGIWVSP 419
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 125 bits (315), Expect = 4e-32
Identities = 93/320 (29%), Positives = 141/320 (44%), Gaps = 51/320 (15%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDL-AM 63
L V T + +P +V GG D ++ G++ L+ P I PND A+
Sbjct: 122 AALAPVATAVRDIVPLLSTVVVAGGSSDD--SVLGYEDLLAEAGPAHAPVDI-PNDSPAL 178
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
+ Y+SGTTG PKG L+H N C+ N D + + +P FHI G
Sbjct: 179 IMYTSGTTGRPKGAVLTHANLTGQAMTCLR---TNGA---DINSDVGFVGVPLFHIAGIG 232
Query: 124 GILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA 181
+L +++ G + P F P ++ + K T +F+VP+ + + P LA
Sbjct: 233 SMLPGLLL-GAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLA 291
Query: 182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--CTLYTRFAIPEAKLGS 239
+R ++ GAAPA+ +L+ + + I +G TE SP C L AI KLGS
Sbjct: 292 -LRVLSWGAAPASDTLLRQMAATF--PEAQILAAFGQTEMSPVTCMLLGEDAI--RKLGS 346
Query: 240 TGQLV------------------------------MLGYLKNEEATKETVDSEGWLHTGD 269
G+++ M GY N EAT E GW H+GD
Sbjct: 347 VGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG-GWFHSGD 405
Query: 270 VAYYDEDGYFYIVDRTKELI 289
+ DE+GY ++VDR K++I
Sbjct: 406 LVRQDEEGYVWVVDRKKDMI 425
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 125 bits (316), Expect = 5e-32
Identities = 103/339 (30%), Positives = 149/339 (43%), Gaps = 76/339 (22%)
Query: 4 IPQL--LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT--SQPPDFQLPKI--- 56
P+L E G A LP R I +G E K + F +L+ D +L
Sbjct: 138 APELATCEPGQLQSARLPELRRVIFLGDE--KHPGMLNFDELLALGRAVDDAELAARQAT 195
Query: 57 -SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN---HIPTSD--TSQETV 110
P+D + Y+SGTTG PKG L+H N I+N I + T ++ +
Sbjct: 196 LDPDDPINIQYTSGTTGFPKGATLTHRN------------ILNNGYFIGEAMKLTEEDRL 243
Query: 111 LSVLPFFHIYGFN-GILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLF 168
+P +H +G G L V +G M+ F P + V + + T L+ VP++ F
Sbjct: 244 CIPVPLYHCFGMVLGNLACVT-HGATMVYPGEGFDPLATLAAVEEERCTALYGVPTM--F 300
Query: 169 LA--SHPAVTPEHLASIRE-VTCGA---APATKSLIDKFKQKVQREDITIRQGYGMTETS 222
+A HP L+S+R + G+ K +IDK ++TI YGMTETS
Sbjct: 301 IAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMS----EVTI--AYGMTETS 354
Query: 223 PCTLYTRFAIP---------------EAKL-----------GSTGQL------VMLGYLK 250
P + TR P E K+ G G+L VM GY
Sbjct: 355 PVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWN 414
Query: 251 NEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
+ E T E +D++GW+HTGD+A DE+GY IV R K++I
Sbjct: 415 DPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI 453
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 123 bits (309), Expect = 2e-31
Identities = 93/333 (27%), Positives = 139/333 (41%), Gaps = 61/333 (18%)
Query: 6 QLLEVGTKIGATLPNFRGTI-----VVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
QL + GT + F+ V + S I K++ + +F + +
Sbjct: 95 QLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVIS--ITSLKEIEDRKIDNFVEK--NESA 150
Query: 61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-TSQETVLSVLPFFHI 119
++ Y+SGTTG PKG L+ N N +N+ D T + + +LP FHI
Sbjct: 151 SFIICYTSGTTGKPKGAVLTQENMFWN--------ALNNTFAIDLTMHDRSIVLLPLFHI 202
Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH 179
G + G +I KF P + + K+K T++ VP++ L + +
Sbjct: 203 GGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN 262
Query: 180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA---- 235
L S+R G AP + L+ +F QG+GMTETSP T F + E
Sbjct: 263 LQSVRWFYNGGAPCPEELMREF----IDRGFLFGQGFGMTETSP----TVFMLSEEDARR 314
Query: 236 KLGSTGQL------------------------------VMLGYLKNEEATKETVDSEGWL 265
K+GS G+ VM Y +AT+ET+ +GWL
Sbjct: 315 KVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWL 373
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+A DEDG+ YIV R KE+I G + P
Sbjct: 374 CTGDLARVDEDGFVYIVGRKKEMIISGGENIYP 406
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 123 bits (310), Expect = 2e-31
Identities = 82/293 (27%), Positives = 119/293 (40%), Gaps = 61/293 (20%)
Query: 43 LVTSQPPDFQ-LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
L+ PD +P D L Y+SGTTG PKGV +H +N + ++
Sbjct: 150 LLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLN--------ALGNVI 201
Query: 102 TSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
V L LP FH G+ + + G H + + K + + K+K T L
Sbjct: 202 EWGMPDRPVYLWTLPMFHCNGWCFPWAITAVGGTH-VCLRKVDAPAIYDLIEKHKVTHLC 260
Query: 161 VVPSLLLFLASHPAVTPEHLAS-IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
P++L LA+ P L +R +T GA P ++I +K++ + YG+T
Sbjct: 261 GAPTVLNMLANAPEADKLPLPRPVRVMTAGAPP-PPAVI----KKMEELGFEVTHVYGLT 315
Query: 220 ETSP----CTLYTRF-AIP---EAKL----------------------------GST--- 240
ET C + A+P A+L G T
Sbjct: 316 ETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGE 375
Query: 241 ----GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
G VM GY KN EAT+E GW H+GD+A DGY I DR+K++I
Sbjct: 376 IVMRGNTVMKGYYKNPEATEEAFAG-GWFHSGDLAVVHPDGYIEIKDRSKDII 427
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 122 bits (307), Expect = 5e-31
Identities = 80/277 (28%), Positives = 114/277 (41%), Gaps = 51/277 (18%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSH-NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
P D+A L Y+ GTTG PKGV +H + + Q + L P
Sbjct: 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADP--------RFLMCTPL 218
Query: 117 FHIYGFNGILNV-VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
H G + ++ G +I + KF P + + + + T F+VP+++ L HP +
Sbjct: 219 SHA---GGAFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL 275
Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR------ 229
L+S+ V GA+P + + + ++R Q YG TE Y R
Sbjct: 276 RTRDLSSLETVYYGASPMSPV---RLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDP 332
Query: 230 ----------FAIP------------EAKLGSTGQ------LVMLGYLKNEEATKETVDS 261
P E G G+ LVM GY E T E
Sbjct: 333 DDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-R 391
Query: 262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+GWLHTGDVA DEDG++YIVDR K++I G V P
Sbjct: 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFP 428
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 121 bits (305), Expect = 9e-31
Identities = 85/277 (30%), Positives = 119/277 (42%), Gaps = 51/277 (18%)
Query: 47 QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVN---LEQCVHPDIVNHIPTS 103
P DF+ +DLA + Y+SGTTG KG LSH N N L
Sbjct: 144 APDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRF--------- 194
Query: 104 DTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP--TILFV 161
T + ++ LP FH +G NV ++ G MI +PKF P+ V+ P T++
Sbjct: 195 -TPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDA----VLALMPRATVMMG 249
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
VP+ L P +T E A +R G+AP L + ++ +R I + YGMTET
Sbjct: 250 VPTFYTRLLQEPRLTREAAAHMRLFISGSAPL---LAETHREFQERTGHAILERYGMTET 306
Query: 222 -----SPCTLYTR-----FAIPEAKL-------------GSTGQL------VMLGYLKNE 252
+P R F +P L G G + V GY +
Sbjct: 307 NMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMP 366
Query: 253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
E T E ++G+ TGD+ DE GY +IV R K+LI
Sbjct: 367 EKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLI 403
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 117 bits (295), Expect = 2e-29
Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 47/273 (17%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFH 118
D+A+ S GTTG+PK + +HN+ + TV L+VLP H
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAE--------ACGLDPGTVYLAVLPAAH 191
Query: 119 IYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
+ + L ++ G ++ +P+ + + K T +VP+LL
Sbjct: 192 NFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQ 251
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP---- 233
L+S+R + G AP + L + ++ R ++Q +GM E YTR P
Sbjct: 252 ADLSSLRVIQVGGAPLSPELARRVEE---RLGCPLQQVFGMAEGL--VNYTRLDDPPDVI 306
Query: 234 ------------EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWL 265
E ++ G G+L + GY + E +G+
Sbjct: 307 MRTQGRPISPADEIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFY 366
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+ D DGY+ +V R K+ I G +++P
Sbjct: 367 RTGDLVRIDADGYYRVVGRIKDQINRGGEKISP 399
Score = 31.8 bits (73), Expect = 0.50
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 292 KGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNEL 325
+ +A +K L ++ ++++P P GKV + L
Sbjct: 451 REQGLAKFK-LPDRLEVVDSLPLTPVGKVDKKAL 483
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 112 bits (283), Expect = 2e-28
Identities = 70/287 (24%), Positives = 109/287 (37%), Gaps = 64/287 (22%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV-----HPDIVNHIPTSDTSQETVLS 112
P+DLA ++ GTTG PK + SH N N P + +L+
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG------------DVLLN 48
Query: 113 VLPFFHIYGFNGILNVVMMYGMHMI--TIPKFTPETYI----ECVVKYKPTILFVVPSLL 166
LP FH+ G + G ++ T F + + V +Y+ T+L VP++L
Sbjct: 49 GLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108
Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL 226
L P + ++S+R GAAP + +F+ + + +GYGMTE +
Sbjct: 109 AALLQVPLGDAD-ISSLRYALTGAAPLPVEVARRFEA---VTGVPVVEGYGMTEGT-GVS 163
Query: 227 YTRFAIPEAKLGSTGQL-----------------------------------VMLGYLKN 251
+ GS G V GYL N
Sbjct: 164 AINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-N 222
Query: 252 EEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ +GWL+TGD+ D DGY ++ R K+LI G+ + P
Sbjct: 223 DAHNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDP 269
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 112 bits (283), Expect = 1e-27
Identities = 93/395 (23%), Positives = 148/395 (37%), Gaps = 111/395 (28%)
Query: 22 RGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH 81
G GG D F + +++ +DLA + Y+SGT +PKG L+H
Sbjct: 141 GGREAPGGWLD-------FADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTH 193
Query: 82 NNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIP 140
+ + V+ I D S + + L LP +H + L + G + +
Sbjct: 194 -------RALIA-EYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD 245
Query: 141 KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDK 200
PE + + + T F P++ + L HP L+S+R+ GA+ ++ +
Sbjct: 246 APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKE 305
Query: 201 FKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE---AKLGSTGQLV------------- 244
++++ + YG TE +P L T PE + GS G+ V
Sbjct: 306 LRERL--PGLRFYNCYGQTEIAP--LATVLG-PEEHLRRPGSAGRPVLNVETRVVDDDGN 360
Query: 245 -----------------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKE 287
MLGY + E T E GW H+GD+ DE+GY +VDR K+
Sbjct: 361 DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKD 419
Query: 288 LIKVKGNQVA------------------------PY------------------------ 299
+IK G VA P
Sbjct: 420 MIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIA 479
Query: 300 ---KKLAG-----GVKFLETIPRNPAGKVLRNELK 326
+LAG V F++ +PRNP+GK+L+ EL+
Sbjct: 480 HCRARLAGFKVPKRVIFVDELPRNPSGKILKRELR 514
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 111 bits (278), Expect = 4e-27
Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 41/295 (13%)
Query: 37 IFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI 96
I + V + P ++P+D+A+L Y+ GTTG+PKG L+H NL V
Sbjct: 170 IVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHG----NLTSAVSIYD 225
Query: 97 VNHIPTSDTSQ--ETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY 154
V P+ T E V+ VLP FHIY IL + G + +F + +
Sbjct: 226 VWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEK 285
Query: 155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ 214
+ T+ VP++ + LA+ P++ L+S+ + G AP + + F++K + ++
Sbjct: 286 RATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTGLK---LKS 342
Query: 215 GYGMTET-SPCTLY---------------------------TRFAIPEAKLGS---TGQL 243
G+GMTET SP T + +P ++G G
Sbjct: 343 GWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPN 402
Query: 244 VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
V GY E + E + +L TGD+ Y D DGYF++VDR K++I G V P
Sbjct: 403 VTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYP 456
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 109 bits (274), Expect = 2e-26
Identities = 79/319 (24%), Positives = 120/319 (37%), Gaps = 64/319 (20%)
Query: 18 LPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPD--FQLPKISPNDLAMLPYSSGTTGVPK 75
LP + V I F + QP D F I P+D+A ++ GTTG+PK
Sbjct: 170 LPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPK 229
Query: 76 GVKLSHNNCAVNLEQCVHPDIVN----HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMM 131
+ +H N ++ N + +TV LP FH+ +
Sbjct: 230 LAQHTHGN-----------EVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLA 278
Query: 132 YGMHMI--TIPKFTPETYI----ECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
G H++ T + I + V +Y+ L VP++ L P V ++S+R
Sbjct: 279 RGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDISSLRY 337
Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL-- 243
CGAAP + +F+ + I +GYG+TE + C E ++GS G
Sbjct: 338 ALCGAAPLPVEVFRRFEAAT---GVRIVEGYGLTEAT-CVSSVNPPDGERRIGSVGLRLP 393
Query: 244 ---------------------------------VMLGYLKNEEATKETVDSEGWLHTGDV 270
V GYL K +GWL+TGD+
Sbjct: 394 YQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLEDGWLNTGDL 452
Query: 271 AYYDEDGYFYIVDRTKELI 289
D DGYF++ R K+LI
Sbjct: 453 GRIDADGYFWLTGRAKDLI 471
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 106 bits (266), Expect = 2e-25
Identities = 78/296 (26%), Positives = 117/296 (39%), Gaps = 68/296 (22%)
Query: 41 KQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN--------CAV-NLEQC 91
Q++ P ++LA + ++SGT G+PKGV L+HNN CA NL
Sbjct: 169 SQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNL--- 225
Query: 92 VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECV 151
T Q+ + P H GF + + G + + FTP+ + +
Sbjct: 226 -------------TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALL 272
Query: 152 VKYKPT-ILFVVP---SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQR 207
+ + T +L P LL L PA L+++R CG K + ++ Q+
Sbjct: 273 EQQRCTCMLGATPFIYDLLNLLEKQPA----DLSALRFFLCGGTTIPKKVA----RECQQ 324
Query: 208 EDITIRQGYGMTETSP--------CTLYT-------------------RFAIPEAKLG-- 238
I + YG TE+SP R +P G
Sbjct: 325 RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEE 384
Query: 239 -STGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
S G V +GYL E T +D EGW ++GD+ DE GY I R K++I V+G
Sbjct: 385 ASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII-VRG 439
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 105 bits (265), Expect = 2e-25
Identities = 81/328 (24%), Positives = 126/328 (38%), Gaps = 87/328 (26%)
Query: 25 IVVGGEHDKS-KNIFGFKQLVTSQPPDF-QLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82
I + + + F QL QP P +S +D A + ++SGTT PKGV ++H
Sbjct: 137 ICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHY 196
Query: 83 N-----------CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVM- 130
N CA+ + L+V+P FHI + M
Sbjct: 197 NLRFAGYYSAWQCAL------------------RDDDVYLTVMPAFHI---DCQCTAAMA 235
Query: 131 --MYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
G + + K++ + V KY+ TI +P ++ L P + +REV
Sbjct: 236 AFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMF 295
Query: 189 GAAPATKSLIDKFKQK-VQREDITIRQGYGMTET-------------------SPCTLYT 228
L D+ K +R + + YGMTET P Y
Sbjct: 296 YLN-----LSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY- 349
Query: 229 RFAIPEAKL-------------------GSTGQLVMLGYLKNEEATKETVDSEGWLHTGD 269
EA++ G G+ + Y + +AT + ++++GWLHTGD
Sbjct: 350 -----EAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGD 404
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVA 297
Y DE+G+FY VDR +IK G V+
Sbjct: 405 TGYVDEEGFFYFVDRRCNMIKRGGENVS 432
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 104 bits (261), Expect = 4e-25
Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 47/276 (17%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
+D+A Y+SGTTG PKGV H + + + +++ P + + S
Sbjct: 88 TEADDIAYWLYTSGTTGKPKGVMHRHRD-PLTFAEAFARELLGLQP-----GDRIFSSSK 141
Query: 116 FFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
F YG L + G + +P TPE ++ + +++PT+LF VP+L L A
Sbjct: 142 LFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA 201
Query: 175 VTPEHLASIRE-VTCGAA-PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI 232
+ S+R V+ G A PA ++ + I I G G TE + R
Sbjct: 202 GSAPLFRSVRLCVSAGEALPA-----GLAERWAEATGIEILDGIGSTEVLHIFISNRPG- 255
Query: 233 PEAKLGSTGQLV------------------------------MLGYLKNEEATKETVDSE 262
A+ G+TG+ V GY E T+ T+ +
Sbjct: 256 -AARPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RD 313
Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GWL TGD D DG++ R ++IKV G V+P
Sbjct: 314 GWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSP 349
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 104 bits (260), Expect = 5e-25
Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 58/284 (20%)
Query: 45 TSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHPDIVNHIP 101
TS F + +I A L ++SGTTG PK V + N AV ++ +
Sbjct: 102 TSLSASFNMDQI-----ATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGF------- 149
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
T + L LP +HI G IL ++ G + + KF +E + + T + +
Sbjct: 150 ---TEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISL 203
Query: 162 VPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
VP+ L L +R++ G + LI ++ Q+ + I YGMT
Sbjct: 204 VPTQLNRLLDEGGHNEN------LRKILLGGSAIPAPLI----EEAQQYGLPIYLSYGMT 253
Query: 220 ETSP--CTLYTRF----------------AIPEAKLGSTGQL------VMLGYLKNEEAT 255
ET T I G++ +M GYL E T
Sbjct: 254 ETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELT 313
Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
+ +GW +TGD+ D +G+ Y++ R +LI G + P
Sbjct: 314 -PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPE 356
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 102 bits (257), Expect = 2e-24
Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 63/305 (20%)
Query: 40 FKQLVTSQPPDFQLP----KISPNDLAMLPYSSGTTGVPKGVK------LSHNNCAVNLE 89
F + + + PDF+ P +D+ ++ ++SGTTG+PK V+ L H A
Sbjct: 162 FDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTA-KYW 220
Query: 90 QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIE 149
Q V + H+ +DT + + +YG V +Y KF P+ +E
Sbjct: 221 QNVKEGGL-HLTVADTGWGKAV----WGKLYGQWIAGAAVFVYDYD-----KFDPKNLLE 270
Query: 150 CVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRED 209
+ KY T P++ FL ++ L+S+R T P + + FK+K
Sbjct: 271 KIEKYGVTTFCAPPTIYRFLI-KEDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKT---G 326
Query: 210 ITIRQGYGMTETSPCTLYTRFAIPEAKLGS------------------------TGQLVM 245
I + +G+G TET+ F E K GS G++V+
Sbjct: 327 IKLMEGFGQTETTLTI--ATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVI 384
Query: 246 -----------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGN 294
+GY ++ E T E V +G+ HTGD A+ DEDGY + V R +LIK G
Sbjct: 385 RTSDGKPLGLFMGYYRDPERTAE-VWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGY 443
Query: 295 QVAPY 299
++ P+
Sbjct: 444 RIGPF 448
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 100 bits (252), Expect = 7e-24
Identities = 71/285 (24%), Positives = 104/285 (36%), Gaps = 62/285 (21%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCA-----VNLEQCVHPDIVNHIPTSDTS-QETV 110
S +D A+L ++SGTTG+PK V +H+ + PD + H +D +
Sbjct: 79 SADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDL-HWTIADPGWAKGA 137
Query: 111 LSVL--PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
S L P+ G V +F E +E + +Y T P+
Sbjct: 138 WSSLFAPWLL-----GAAVFVYHG-------RRFDAERTLELLERYGVTTFCAPPTAYRM 185
Query: 169 LASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET----- 221
L + +R V P +ID ++ + IR GYG TET
Sbjct: 186 LL---QQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATG---LPIRDGYGQTETGLLVA 239
Query: 222 -SPCTL----YTRFAIP------------EAKLGSTGQLV----------MLGYLKNEEA 254
P P E G G + GYLK+ E
Sbjct: 240 NFPGMEVKPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEK 299
Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
T+ T+ W TGD A DEDGYF+ V R ++IK G ++ P+
Sbjct: 300 TEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPF 343
Score = 28.1 bits (63), Expect = 6.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 285 TKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
KEL + + APYK ++F+E +P+ +GK+ R EL+
Sbjct: 389 AKELQEHVKKRTAPYKY-PREIEFVEELPKTVSGKIRRVELR 429
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 100 bits (252), Expect = 1e-23
Identities = 81/285 (28%), Positives = 119/285 (41%), Gaps = 47/285 (16%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC---VHPDIVNHIPTSDTSQ 107
F+ K+ P+D+A L Y+ GTTGV KG L H N N+ Q + P Q
Sbjct: 196 FKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK---PRPDQ 252
Query: 108 ETVLSVLPFFHIYGF--NGILNVVMMYGMHMITIPKFTPE---TYIECVVKYKPTILFVV 162
+ LP +HI+ G+L M G I IP P +I+ + KY+ I V
Sbjct: 253 LNFVCALPLYHIFALTVCGLLG--MRTGGRNILIP--NPRDIPGFIKELKKYQVHIFPAV 308
Query: 163 PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS 222
+L L ++P + + V G A + + + ++ IT +GYG++ETS
Sbjct: 309 NTLYNALLNNPDFDKLDFSKLI-VANGGGMAVQRPVAERWLEMTGCPIT--EGYGLSETS 365
Query: 223 PCTLYTRFAIPE-----------------------AKLGSTGQL------VMLGYLKNEE 253
P E LG G++ VM GY +
Sbjct: 366 PVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPD 425
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T + + ++G+ TGDV DE GY IVDR K++I V G V P
Sbjct: 426 ETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYP 470
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 100 bits (251), Expect = 2e-23
Identities = 86/328 (26%), Positives = 128/328 (39%), Gaps = 61/328 (18%)
Query: 13 KIGATLPNFRGTIVVGG-EH---DKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
KI LP+ +V+ H KN +++ + DF N A + Y+S
Sbjct: 127 KIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTS 186
Query: 69 GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ-ETVLSVLPFFHIYGFNGILN 127
GTTG PKGV SH + +H + N+ TS +T+L V+P FH + GI
Sbjct: 187 GTTGDPKGVLYSHRS------NVLHALMANNGDALGTSAADTMLPVVPLFHANSW-GIAF 239
Query: 128 VVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
G ++ K + E + K T VP++ L L + L ++ V
Sbjct: 240 SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMV 299
Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTRF--AIPEAKL--- 237
CG + +S+I F + + +R +GMTE SP L F +A+L
Sbjct: 300 VCGGSAMPRSMIKAF----EDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVL 355
Query: 238 -------------------------GST-------GQLVMLGYLKNEEATKETVDSEGWL 265
G T G V Y + E +D +G+
Sbjct: 356 QKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFF 412
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKG 293
TGDVA D GY I DR+K++IK G
Sbjct: 413 DTGDVATIDAYGYMRITDRSKDVIKSGG 440
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 100 bits (250), Expect = 3e-23
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 67/295 (22%)
Query: 52 QLPKISPNDLAMLPYSSGTTGVPKGVKLSH--------NNCAVNLEQCVHPDIVNHIPTS 103
LP + + LA L Y+ GTTG+PKG + + AV +
Sbjct: 202 PLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG------------- 248
Query: 104 DTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVP 163
LS LP F I G N L + G ++ + ++ ++ V +Y+ T ++
Sbjct: 249 -GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLV 307
Query: 164 SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT---IRQG-YGMT 219
+ L HP L+S+R+V K L ++Q+ + +T + + +GMT
Sbjct: 308 DNAVELMDHPRFAEYDLSSLRQV--RVVSFVKKLNPDYRQRWR--ALTGSVLAEAAWGMT 363
Query: 220 ETSPCTLYTR-----------------FAIP--EAK-----------LGSTGQLV----- 244
ET C +T +P E K LG+ G++V
Sbjct: 364 ETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPS 423
Query: 245 -MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ GY EAT E + +GWLHTGD+ DE G+ + + R KE++KV G V P
Sbjct: 424 LLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFP 477
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 95.9 bits (239), Expect = 4e-22
Identities = 65/286 (22%), Positives = 107/286 (37%), Gaps = 66/286 (23%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
+D A+L Y+SGTTG PKG H ++ H+P + E F
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRV------------LLGHLPGVELYFELAPRPGDVF 134
Query: 118 H-------IYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLF 168
I G +L + +G+ ++ +F PE + +Y T F+ P+ L
Sbjct: 135 WTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKM 194
Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLI----DKFKQKVQREDITIRQGYGMTETSPC 224
+ + + +R V G + L+ D+ +T+ + YG TE +
Sbjct: 195 MRRVGSERARYDLRLRAVASGGESLGEELLEWARDELG-------LTVNEFYGQTEAN-L 246
Query: 225 TLYTRFAIPEAKLGSTGQ--------------------------------LVMLGYLKNE 252
+ A+ A+ GS G+ ++ LGY N
Sbjct: 247 VVGNCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNP 306
Query: 253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
EAT + WL TGD+ D DGY + R ++IK G ++ P
Sbjct: 307 EATAAKF-AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGP 351
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 96.4 bits (240), Expect = 4e-22
Identities = 73/305 (23%), Positives = 112/305 (36%), Gaps = 69/305 (22%)
Query: 39 GFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN 98
F + P P I P ++++ ++SGT+G PKGV LS N L+Q H N
Sbjct: 116 AFIASADALEPADT-PSIPPERVSLILFTSGTSGQPKGVMLSERN----LQQTAH----N 166
Query: 99 HIPTSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIE-------C 150
+ L P FHI G + V+ G ++ F P+ +
Sbjct: 167 FGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALG 226
Query: 151 VVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP-ATKSLIDKFKQKVQRED 209
+ Y F VP + + P L + + G AP A + ++ + D
Sbjct: 227 ITHY-----FCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVD 281
Query: 210 ITIRQGYGMTETSPCTLYTRFAIP------EAKLGSTG------QL-------------- 243
G+GM+E T F + AK G+ G Q
Sbjct: 282 -----GFGMSEAG-----TVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGV 331
Query: 244 ----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
+ GY + +AT +GW TGD+A D DG+F++VDR K++ G
Sbjct: 332 PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGG 391
Query: 294 NQVAP 298
V P
Sbjct: 392 ENVYP 396
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 96.2 bits (240), Expect = 4e-22
Identities = 84/300 (28%), Positives = 124/300 (41%), Gaps = 72/300 (24%)
Query: 50 DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD----- 104
+ P+ P+ A++ Y+SGTTG PKGV LS A +L D
Sbjct: 119 WHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADL---------------DALAEA 163
Query: 105 ---TSQETVLSVLPFFHIYGFNGILNVV--MMYGMHMITIPKFTPETYIECVVKYKPTIL 159
T+ + ++ LP FH++G +L V+ + G + + TPE Y + + T+
Sbjct: 164 WQWTADDVLVHGLPLFHVHGL--VLGVLGPLRIGNRFVHTGRPTPEAYAQ-ALSEGGTLY 220
Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
F VP++ +A+ P L R + G+A + D+ + + YGMT
Sbjct: 221 FGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALTGHRPV---ERYGMT 276
Query: 220 ETSPCTLYTRFAIPEAKLGSTG--------QLV----------------------ML--G 247
ET TL TR A E + G G +LV L G
Sbjct: 277 ETL-ITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDG 334
Query: 248 YLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDR-TKELIKVKGNQVAPYKKLAGGV 306
YL +AT ++GW TGDVA D DG IV R + +LIK G Y+ AG +
Sbjct: 335 YLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGG-----YRIGAGEI 389
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 96.3 bits (240), Expect = 4e-22
Identities = 81/311 (26%), Positives = 118/311 (37%), Gaps = 57/311 (18%)
Query: 18 LPNFRGTIVVGGEHDKSKNIFGFKQLVTS----QPPD----FQLPKISPNDLAMLPYSSG 69
LP R +VVGG+ S F+ L+ + Q PD + P+D+ L Y+SG
Sbjct: 153 LPALRHVVVVGGDGADS-----FEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSG 207
Query: 70 TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-TSQETVLSVLPFFHIYGFNGILNV 128
TTG PKGV + N N IV + + + +L P H GF L +
Sbjct: 208 TTGEPKGVMHTANTLMAN--------IVPYAERLGLGADDVILMASPMAHQTGFMYGLMM 259
Query: 129 VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
+M G + + P E + T L L + ++S+R C
Sbjct: 260 PVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLC 319
Query: 189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE-------------- 234
AP +L+ ++ I +GMTE TL E
Sbjct: 320 AGAPIPGALV---ERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVE 376
Query: 235 --------AKL--GSTGQLVM------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
A L G G+L + GYLK + D++GW TGD+A D DGY
Sbjct: 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG--TDADGWFDTGDLARIDADGY 434
Query: 279 FYIVDRTKELI 289
I R+K++I
Sbjct: 435 IRISGRSKDVI 445
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 95.0 bits (237), Expect = 9e-22
Identities = 75/286 (26%), Positives = 110/286 (38%), Gaps = 65/286 (22%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV-------HPDIVNHIPTS-DTSQET 109
P+DLA + ++SG+TG PKGV++SH N A L+ V N P S D
Sbjct: 96 PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFD----- 150
Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTILFVVPSLL 166
LSV F ++ + G + IPK P E + ++ T+ VPS
Sbjct: 151 -LSV---FDLFPA-------LASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFA 199
Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE-TSPCT 225
L + PE L S+R K L +++ + I YG TE T T
Sbjct: 200 SLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFP--NARIINLYGPTEATVAVT 257
Query: 226 LY--TR------------FAIPEAKL------------GSTGQL------VMLGYLKNEE 253
Y T + P + G G+L V GYL N E
Sbjct: 258 AYEVTPEPLSRNEPLPIGYPKPGLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPE 317
Query: 254 ATKE---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
T + + + W TGD+ Y ++DG + R IK+ G ++
Sbjct: 318 KTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRI 363
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 93.5 bits (233), Expect = 2e-21
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 72/289 (24%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
P+DLA + Y+SG+TG PKGV ++H + VNL + +
Sbjct: 118 GPDDLAYVIYTSGSTGRPKGVVVTHRS-LVNL----LAWLARRYGLDPDD------RVLQ 166
Query: 117 FHIYGFNGIL-----------NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
F F+ + +V+ + ++ T+L + PSL
Sbjct: 167 FASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLAAL----IAEHPVTVLNLTPSL 222
Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT 225
L LA+ P LAS+R V G T +L+D+++ + + YG TET+ +
Sbjct: 223 LALLAAAL---PPALASLRLVILGGEALTPALVDRWRARG--PGARLINLYGPTETTVWS 277
Query: 226 LYTRFAIPEAK---------------------------LGSTGQL------VMLGYLKNE 252
T +A +G G+L V GYL
Sbjct: 278 TATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRP 337
Query: 253 EATKE--------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
E T E D TGD+ Y DG + R + +K++G
Sbjct: 338 ELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRG 386
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 93.4 bits (232), Expect = 4e-21
Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 46/283 (16%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI---VNHIPTSDT 105
P + P P A + Y+SGTTG+PKG + + +
Sbjct: 142 PPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQ--------RAAESRVLFMSTQAGLRHG 193
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ + + + T LF P+
Sbjct: 194 RHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTH 253
Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT 225
L LA+ P L S+ VT A +++++ Q + E + I YG TE +
Sbjct: 254 LDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNI---YGTTEAMN-S 309
Query: 226 LYTRFAIPEAKL-----------------------GSTGQLVM-------LGYLKNEEAT 255
LY R ++ G G+LV+ GYL +AT
Sbjct: 310 LYMRDPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQAT 369
Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
E + +GW T DVA D G I+ R ++I G + P
Sbjct: 370 AEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHP 411
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 92.3 bits (230), Expect = 9e-21
Identities = 81/302 (26%), Positives = 121/302 (40%), Gaps = 73/302 (24%)
Query: 40 FKQLVTSQPPDF--QLPK-----ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV 92
++ + S PDF LP I+ N Y+SGTTG PKGV H +N
Sbjct: 162 YEAFLASGDPDFAWTLPADEWDAIALN------YTSGTTGNPKGVVYHHRGAYLN----- 210
Query: 93 HPDIVNHIPTSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECV 151
+++I + V L LP FH G+ V G + + + K P+ + +
Sbjct: 211 ---ALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTN-VCLRKVDPKLIFDLI 266
Query: 152 VKYKPTILFVVPSLLLFLASHPAVTPEHLA-SIREVTCGAAPATKSLIDKFKQKVQREDI 210
++ T P +L L + PA + + + GAAP + K++
Sbjct: 267 REHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVI-----AKMEEIGF 321
Query: 211 TIRQGYGMTET-SPCTL------YTRFAIPE-AKL------------------------- 237
+ YG+TET P T+ + + E A+L
Sbjct: 322 DLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPV 381
Query: 238 ---GST-------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKE 287
G T G +VM GYLKN +AT+E GW HTGD+A DGY I DR+K+
Sbjct: 382 PADGETIGEIMFRGNIVMKGYLKNPKATEEAFAG-GWFHTGDLAVLHPDGYIKIKDRSKD 440
Query: 288 LI 289
+I
Sbjct: 441 II 442
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 91.0 bits (226), Expect = 3e-20
Identities = 69/285 (24%), Positives = 109/285 (38%), Gaps = 66/285 (23%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHN-------NCAVNLEQCVHPDIVNHIPTSDTSQE 108
+ P D A + Y+SGTTG KGV H N A +LE + D V
Sbjct: 177 VQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE--IGADDV----------- 223
Query: 109 TVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
+ + LP FH N ++ G + P+F+ + V ++ T+ +++ +++
Sbjct: 224 -LYTTLPLFHTNALNAFFQ-ALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSI 281
Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTLY 227
L S PA + +R PA +L F+ +R + + GYG TET +
Sbjct: 282 LLSQPARESDRAHRVRVALGPGVPA--ALHAAFR---ERFGVDLLDGYGSTETNFVIAV- 335
Query: 228 TRFAIPEAKLGSTGQLV---------------------------------MLGYLKNEEA 254
+ GS G+L GY E
Sbjct: 336 ---THGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEK 392
Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
T E + W HTGD D DG+F VDR K+ I+ +G ++ +
Sbjct: 393 TVEAWRNL-WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSF 436
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 90.7 bits (225), Expect = 3e-20
Identities = 75/274 (27%), Positives = 113/274 (41%), Gaps = 46/274 (16%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH-IPTSDTSQETVLSVLP 115
+P DL L Y+SGTT PKGV S+ N +H ++H I T+ E +L V P
Sbjct: 147 APTDLVRLMYTSGTTDRPKGVMHSYGN--------LHWKSIDHVIALGLTASERLLVVGP 198
Query: 116 FFHIYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHP 173
+H+ F+ GI V+ G + +F PE + + +++ T ++ P +L + + P
Sbjct: 199 LYHVGAFDLPGI--AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVP 256
Query: 174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP 233
L S+ G +S I F + R YG+TET
Sbjct: 257 DRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYI--DAYGLTETCSGDTLMEAGRE 314
Query: 234 EAKLGSTGQL------------------------------VMLGYLKNEEATKETVDSEG 263
K+GSTG+ V GY K+ E T E
Sbjct: 315 IEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGD 373
Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
W +GDV Y DE+G+ Y+ DR K++I G +A
Sbjct: 374 WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIA 407
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 90.5 bits (225), Expect = 4e-20
Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 60/327 (18%)
Query: 13 KIGATLPNFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
+ PN +G + + + S + ++ LV +Q D+ P+ N + L Y+S
Sbjct: 127 ALAPQCPNVKGWVAMT-DAAHLPAGSTPLLCYETLVGAQDGDYDWPRFDENQASSLCYTS 185
Query: 69 GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
GTTG PKG SH + ++ PD + ++++ VL V+P FH+ + G+
Sbjct: 186 GTTGNPKGALYSHRSTVLHAYGAALPDAMGL-----SARDAVLPVVPMFHVNAW-GLPYS 239
Query: 129 VMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVT 187
+ G ++ P ++ E + + T VP++ L L +H +++R
Sbjct: 240 APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV 299
Query: 188 CGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTR-FAIPEA------- 235
G + ++I F+ + + + +GMTE SP C L + +P
Sbjct: 300 IGGSACPPAMIRTFEDEY---GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE 356
Query: 236 KLG-----------------------STGQLVMLG------YLKNEEATKETVDSEGWLH 266
K G + G L + G Y + + + VD GW
Sbjct: 357 KQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASP--LVD--GWFP 412
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
TGDVA D DG+ I DR+K++IK G
Sbjct: 413 TGDVATIDADGFMQITDRSKDVIKSGG 439
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 90.6 bits (225), Expect = 5e-20
Identities = 70/308 (22%), Positives = 129/308 (41%), Gaps = 65/308 (21%)
Query: 41 KQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI 100
++ + + D +P+D ++ ++SGTTG PKGV +SH+ A+ ++ IV +
Sbjct: 157 QRALGTTELD---YAWAPDDAVLICFTSGTTGRPKGVTISHS--ALIVQSLAKIAIVGY- 210
Query: 101 PTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
+ L P HI G + L ++M+ H++ +PKF + ++ + ++ T +
Sbjct: 211 ----GEDDVYLHTAPLCHIGGLSSALAMLMVGACHVL-LPKFDAKAALQAIKQHNVTSMI 265
Query: 161 VVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM 218
VP+++ L + ++T + S+R++ G + L+ K+ + YGM
Sbjct: 266 TVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLF--SAYGM 323
Query: 219 TETSPC------TLY---------TRFAIPEAKLGSTGQL-------------------- 243
TE C TL+ T + + K S Q
Sbjct: 324 TEA--CSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE 381
Query: 244 -------------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK 290
VMLGY T + ++GWL TGD+ + D+ G +++ R+ + IK
Sbjct: 382 SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK 441
Query: 291 VKGNQVAP 298
G V P
Sbjct: 442 TGGENVYP 449
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 90.0 bits (224), Expect = 5e-20
Identities = 62/285 (21%), Positives = 95/285 (33%), Gaps = 61/285 (21%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVL-SVLPFFH 118
D A Y+SGTTG+PK +SH + VL LP +H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGG--------LGLLKPDDVLYLCLPLYH 133
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+ + G + KF+ + V +Y T V L +L + P +
Sbjct: 134 SNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDD 193
Query: 179 HLASIREVT-CGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA-- 235
+R++ G P + D+FK++ I + YG TE F P A
Sbjct: 194 RDHPLRKIIGNGLRP---DIWDEFKERFGVPR--IVEFYGSTE-GNVGFINLFNKPGAVG 247
Query: 236 ------------------------------KLGSTGQLV--------MLGYLKNEEATKE 257
G G L+ GY +E K+
Sbjct: 248 RLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKK 307
Query: 258 TV-----DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
+ + + +TGD+ D GYFY VDR + + KG V+
Sbjct: 308 ILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVS 352
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 89.6 bits (223), Expect = 7e-20
Identities = 72/304 (23%), Positives = 111/304 (36%), Gaps = 78/304 (25%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
P+D+A + +SSG+TG PKGV L+H N N+E I+ TS++ LS +P
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIE-----AIIEAAEI--TSEDVFLSWMPLT 157
Query: 118 HIYGFNGILNVVMMYGMHMITIP--KFT--PETYIECVVKYKPTIL----FVVPSLLLFL 169
H G G G++ +P F P +++ +++ TIL F LL
Sbjct: 158 HDMGLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYLLKHF 217
Query: 170 ASHPAVTPE-HLASIREVTCGAAPATKSLIDKF--------------------------- 201
+ L+S+R + GA P + L ++F
Sbjct: 218 K--TEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAV 275
Query: 202 ---------------------KQKVQREDITIRQGYGMTETSPCTLYTRFAI-------- 232
K+ D E I
Sbjct: 276 SFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVL 335
Query: 233 PEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
P+ +G G V GY N EATK+++ +GWL TGD+ + +G I R K++I
Sbjct: 336 PDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDII 394
Query: 290 KVKG 293
V G
Sbjct: 395 IVNG 398
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 90.4 bits (225), Expect = 7e-20
Identities = 84/299 (28%), Positives = 122/299 (40%), Gaps = 73/299 (24%)
Query: 41 KQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI 100
K L+ + P P+D A++ ++SG+ G PKGV LSH N N Q + I
Sbjct: 775 KGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQ-----VAARI 829
Query: 101 PTSDTSQETVLSVLPFFHIYGFNG-----ILNVVMMY----GMHMITIPKFTPETYIECV 151
S ++ V + LP FH +G G +L+ V ++ +H IP E +
Sbjct: 830 DFS--PEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIP--------ELI 879
Query: 152 VKYKPTILFVVPSLLLFLASHPAVT-PEHLASIREVTCGAAP---ATKSL-IDKFKQKVQ 206
TILF FL + P S+R V GA T+ ++KF
Sbjct: 880 YDTNATILF---GTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFG---- 932
Query: 207 REDITIRQGYGMTETSPCTLYTRFAI--PEA-KLGSTGQL-------------------- 243
I I +GYG+TET+P A+ P K G+ G+L
Sbjct: 933 ---IRILEGYGVTETAPV-----IALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRL 984
Query: 244 ------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
VMLGYL+ E ++GW TGD+ DE+G+ I R K K+ G +
Sbjct: 985 FVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMI 1043
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 88.7 bits (220), Expect = 2e-19
Identities = 87/328 (26%), Positives = 128/328 (39%), Gaps = 57/328 (17%)
Query: 16 ATLPNFRGTIVVGGEHDKSKNIFG-----FKQLVTSQPPDFQLPKISPNDLAMLPYSSGT 70
+ R I+VG S+ G + +L+ D P I D+A + Y+SG+
Sbjct: 116 PGCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDS-DMAAILYTSGS 174
Query: 71 TGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVM 130
TG PKGV LSH N V Q V + N + +L+VLP YGFN L
Sbjct: 175 TGRPKGVVLSHRN-LVAGAQSVATYLENR------PDDRLLAVLPLSFDYGFNQ-LTTAF 226
Query: 131 MYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190
G ++ P ++ + K+ T L VP L LA S+R +T
Sbjct: 227 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL-DWPESAAPSLRYLTNSG 285
Query: 191 APATKSLIDKFKQKVQREDITIRQGYGMTET------SPCTLYTR-----FAIP------ 233
++ + + + + + + YG+TE P + R AIP
Sbjct: 286 GAMPRATLSRLRSFLPNARLFLM--YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV 343
Query: 234 ------------EAKLGSTGQLVMLGYLKNEEATKE----TVDSEGWLH-------TGDV 270
E +L G LV +GY + E T E G LH +GD
Sbjct: 344 LREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDT 403
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
DE+G+ Y V R E+IK G +V+P
Sbjct: 404 VRRDEEGFLYFVGRRDEMIKTSGYRVSP 431
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 88.5 bits (220), Expect = 2e-19
Identities = 76/325 (23%), Positives = 119/325 (36%), Gaps = 85/325 (26%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
S PPD L P+D A+L +SG+TGVPK V L+H N V VN T
Sbjct: 154 SAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV---QVNGF----T 206
Query: 106 SQETVLSVLPFFHIYG--FNGILNVVMMYGMHMITIPKFT------PETYIECVVKYKPT 157
+ L+ +P H+ G + +V + G I +P T P +++ + +Y+ T
Sbjct: 207 PDDVSLNWMPLDHVGGIVMLHLRDVYL--GCQQIHVP--TDYILADPLRWLDLIDRYRVT 262
Query: 158 ILFVVPSLL--LFLASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQKVQ----RED 209
I + P+ L + + L+S+R + I +F + + D
Sbjct: 263 ITWA-PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPAD 321
Query: 210 ITIRQGYGMTETSPCTLYT--------------------------------RFA------ 231
IR +GM+ET Y+ F
Sbjct: 322 A-IRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPI 380
Query: 232 --------------IPEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYD 274
+PE ++G G V GY +N EA E +GW TGD+ +
Sbjct: 381 PGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH 440
Query: 275 EDGYFYIVDRTKELIKVKGNQVAPY 299
DG I R K++I + G +
Sbjct: 441 -DGRLTITGREKDMIIINGVNYYNH 464
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 88.0 bits (218), Expect = 3e-19
Identities = 79/320 (24%), Positives = 125/320 (39%), Gaps = 58/320 (18%)
Query: 18 LPNFRGTIVVGGEHDKSKNIFGFKQLVT-----SQPPD---FQLPKISPNDLAMLPYSSG 69
LP R +V+ G+ D F +++ P P+ SP+D+ L Y+SG
Sbjct: 151 LPALRQVVVIDGDGDD-----SFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSG 205
Query: 70 TTGVPKGVKLSHNNCAVNLEQCVHPDIVN-HIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
TTG PKGV + N N+ HP + D +L P H GF L +
Sbjct: 206 TTGEPKGVMHTANTLFSNI----HPYAERLELGGGD----VILMASPMAHQTGFMYGLMM 257
Query: 129 VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
++ + + P E + + T L L + + S+ C
Sbjct: 258 PLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLC 317
Query: 189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY----------TRFAIP----E 234
AP L+++ + + I +GMTE T+ T P E
Sbjct: 318 AGAPIPGILVERAWELL---GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVE 374
Query: 235 AKL----------GSTGQLVML------GYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
K+ G TG+L++ GYLK + D+EGW TGD+A+ D +GY
Sbjct: 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLN--STDAEGWFDTGDLAFQDAEGY 432
Query: 279 FYIVDRTKELIKVKGNQVAP 298
I R+K++I ++G + P
Sbjct: 433 IRINGRSKDVI-IRGGENIP 451
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 87.8 bits (218), Expect = 3e-19
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 28/135 (20%)
Query: 189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPC---------TLY----------TR 229
GAAP ++ ++ F +I I + YGM+ETS L T+
Sbjct: 326 GAAPISRETLEFFLSL----NIPIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETK 381
Query: 230 FAIPEA----KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT 285
P+A ++ G+ V +GYL EE T+E +D +GWLH+GD+ + D+DG+ YI R
Sbjct: 382 IHNPDADGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRI 441
Query: 286 KELIKVKGNQ-VAPY 299
KELI G + V P
Sbjct: 442 KELIITAGGENVPPV 456
Score = 57.0 bits (138), Expect = 6e-09
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 13 KIGATLPNFRGTIVVGGE-HDKSKNIFGFKQL--VTSQPPDFQLPKI----SPNDLAMLP 65
I LP+ + I +K N++ +K+ + PD QL I PN L
Sbjct: 97 AIQDQLPHLKAIIQYREPLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLI 156
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
Y+SGTTG+PKGV LSH+N + V H+ QE+V+S LP HI
Sbjct: 157 YTSGTTGMPKGVMLSHDNITWTAKA-----AVKHMDLRTVGQESVVSYLPLSHI 205
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 87.7 bits (218), Expect = 4e-19
Identities = 81/340 (23%), Positives = 129/340 (37%), Gaps = 92/340 (27%)
Query: 42 QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLE---QCVHPDIVN 98
L+ + P D + +DLA++ +SG+TG PK V+++H N N E D+
Sbjct: 137 DLLAADPID--PVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVET 194
Query: 99 HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYI-------ECV 151
+ ++S LP FH G G L V M +G ++ + TP ++ E +
Sbjct: 195 DV---------MVSWLPLFHDMGMVGFLTVPMYFGAELVKV---TPMDFLRDPLLWAELI 242
Query: 152 VKYKPTILFVVPSLLLFLASHPAVTPEH----LASIREVTCGAAPATKSLIDKF-----K 202
KY+ T+ LA + L+S+R GA P + ++ +
Sbjct: 243 SKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGAR 302
Query: 203 QKVQREDITIRQGYGMTET------SPCTL-------------YTRFAIPEAKLGSTGQL 243
++ E I YGM E SPC R A+P K G+T +L
Sbjct: 303 FGLRPEAIL--PAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATK-GNTRRL 359
Query: 244 VMLG--------------------------YLKNEEATK---------ETVDSEGWLHTG 268
LG L+ E T D++GWL TG
Sbjct: 360 ATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTG 419
Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAPY--KKLAGGV 306
D+ Y E+G + R K++I + G + P ++ A V
Sbjct: 420 DLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARV 459
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 85.0 bits (211), Expect = 3e-18
Identities = 73/293 (24%), Positives = 116/293 (39%), Gaps = 80/293 (27%)
Query: 39 GFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHP- 94
++ P + P A + Y+SG+TG PKGV LS A +L + +
Sbjct: 98 YIALRPSANPVEL------PAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAIL 151
Query: 95 DIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL--NVVMMYGMHM----ITIP-------- 140
+ H L +LP L N+ +Y + + +
Sbjct: 152 EPERH-----------LCLLPL-------ATLLENIAGVYAPLLMGATVILVPLAELGLS 193
Query: 141 ---KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSL 197
P ++ + +++P L +VP LL+ L + P S+R V G A + SL
Sbjct: 194 GSSGLDPAQFVAALSRWQPHSLILVPQLLMALVAAVEQGPLPPESLRFVAVGGARVSPSL 253
Query: 198 IDKFKQKVQREDITIRQGYGMTE-TSPCTLYTRFAIPEA-KLGSTGQL------------ 243
+ Q+ + + + +GYG++E S +L T P A + GS G+
Sbjct: 254 L----QRARALGLPVYEGYGLSECASVVSLNT----PGADRPGSVGKPLPHVQVSIANDG 305
Query: 244 -------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
+MLGYL AT + W TGD+ + DE+GY YI R K LI
Sbjct: 306 EILVRGSLMLGYLGEPPATDD------WWATGDLGHLDEEGYLYINGRKKNLI 352
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 83.7 bits (207), Expect = 9e-18
Identities = 74/327 (22%), Positives = 124/327 (37%), Gaps = 48/327 (14%)
Query: 6 QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLP 65
+LL V P+ +VVG +L+ ++ F+ +D A
Sbjct: 111 ELLPVIKAALGKSPHLEHRVVVGRPEAGEVQ---LAELLATESEQFKPAATQADDPAFWL 167
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGI 125
YSSG+TG+PKGV +H+N E + I D V S F YG
Sbjct: 168 YSSGSTGMPKGVVHTHSNPYWTAELYARNTL--GIREDD----VVFSAAKLFFAYGLGNA 221
Query: 126 LNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
L M G + + + TP+ + + +++PTI + VP+L + + P + E +R
Sbjct: 222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLR 281
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA-KLGSTGQL 243
T + +++ R + I G G TE L P + G++G+
Sbjct: 282 LCTSAGEALPAEVGQRWQ---ARFGVDIVDGIGSTEMLHIFLSNL---PGDVRYGTSGKP 335
Query: 244 V------------------------------MLGYLKNEEATKETVDSEGWLHTGDVAYY 273
V Y N T++T E W +GD
Sbjct: 336 VPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE-WTRSGDKYVR 394
Query: 274 DEDGYFYIVDRTKELIKVKGNQVAPYK 300
++DG + RT +++KV G V+P++
Sbjct: 395 NDDGSYTYAGRTDDMLKVSGIYVSPFE 421
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 83.1 bits (206), Expect = 1e-17
Identities = 69/299 (23%), Positives = 107/299 (35%), Gaps = 46/299 (15%)
Query: 16 ATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQ--LPKISPNDLAMLPYSSGTTGV 73
A L +V I L T + P+ +A ++SG+TG+
Sbjct: 119 AALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGL 178
Query: 74 PKGVKLSHNNCAVN---LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVM 130
PK V +H N + QC P + P ++ LP+ H +G N N+V+
Sbjct: 179 PKAVINTHRMLCANQAMIAQCW-PFLTEEPPV-------LVDWLPWNHTFGGNHNFNMVL 230
Query: 131 MYGMHM-ITIPKFTPETYIECVVKYK---PTILFVVP----SLLLFLASHPAVTPEHLAS 182
G + I K P + E + + PT+ F VP L+ L A+
Sbjct: 231 YNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEMLVDALERDAALRRRFFKR 290
Query: 183 IREVTCGAAPATKSL---IDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------ 233
+R + A + + + + E I + G G TET+P + +
Sbjct: 291 LRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRSGVIG 350
Query: 234 ------EAKLGSTGQ---------LVMLGYLKNEEATKETVDSEGWLHTGD-VAYYDED 276
E KL G V GY ++ E T E D EG+ GD V + D D
Sbjct: 351 LPAPGTELKLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVDPD 409
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 83.0 bits (206), Expect = 1e-17
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTL-------YTRFAIP- 233
+R + G AP + + + + + QGYG+TET TL P
Sbjct: 271 VRLMLSGGAPLSPDTQEFLRVAL---GCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPL 327
Query: 234 ---EAKLGST-------------------GQLVMLGYLKNEEATKETVDSEGWLHTGDVA 271
E KL G V GY KN E T E D +GW HTGD+
Sbjct: 328 PCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIG 387
Query: 272 YYDEDGYFYIVDRTKELIK-VKGNQVAPYK 300
+ DG I+DR K L K +G VA K
Sbjct: 388 EWLPDGTLKIIDRKKNLFKLSQGEYVALEK 417
Score = 68.0 bits (167), Expect = 1e-12
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 34 SKNIFGFKQLVT---SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90
+ ++ F++L PK P DLA + Y+SGTTG PKGV L+H N +
Sbjct: 85 AVKVYSFEELEELGKKNKVPPTPPK--PEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETY--I 148
+P + +S LP HI+ + NV + G I ++ +T
Sbjct: 143 INK-----IVPEFIGPTDVYISYLPLAHIFERV-VENVCLYIGG---RIGYYSGDTRGLK 193
Query: 149 ECVVKYKPTILFVVPSLL 166
+ + KPT+ VP +L
Sbjct: 194 GDIKELKPTVFVGVPRVL 211
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 82.8 bits (205), Expect = 1e-17
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 89/301 (29%)
Query: 43 LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT 102
L +P D P +M+ Y+SGTTG PKGV+ + PT
Sbjct: 140 LAQQEPYD---GPPVPQPQSMI-YTSGTTGHPKGVRRAA-------------------PT 176
Query: 103 SDTSQETVLSVLPFFHIYGFNGILNVVM---MY--------------GMHMITIPKFTPE 145
+ + IYG + ++ +Y G ++ P+F PE
Sbjct: 177 PEQAAAAEQMRA---LIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPE 233
Query: 146 TYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQ 203
++ + +++ T + +VP++ + L P ++S+R V AAP
Sbjct: 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPA-------- 285
Query: 204 KVQREDI-----TIRQGYGMTETSPCTLYTR-----------FAIPEAKL---------- 237
V+R I I + YG TE+ T T A P A+L
Sbjct: 286 DVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPL 345
Query: 238 --GSTGQLVM-------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL 288
G G++ Y E E +D G++ +GDV Y D DGY ++ DR +++
Sbjct: 346 PQGEIGEIYSRIAGNPDFTYHNKPEKRAE-IDRGGFITSGDVGYLDADGYLFLCDRKRDM 404
Query: 289 I 289
+
Sbjct: 405 V 405
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 82.8 bits (205), Expect = 2e-17
Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 55/274 (20%)
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP--TSDTSQETV-LSVLPFFHIYGF 122
++SGTTG PK L+H A I NH+ T+++ L V P H G
Sbjct: 170 FTSGTTGRPKAAVLTHGQMAFV--------ITNHLADLMPGTTEQDASLVVAPLSHGAGI 221
Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
+ + V ++ +F P V +++ T LF VP++L L HPAV +S
Sbjct: 222 HQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSS 281
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDI--TIRQGYGMTETS------PCTLYTRFAIPE 234
+R V AP ++ QK + + Q +G+ E + P L+ P+
Sbjct: 282 LRYVIYAGAPMYRA-----DQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPD 336
Query: 235 AKLGS------------------------TGQL------VMLGYLKNEEATKETVDSEGW 264
A++G+ TG++ V GY N EA + +GW
Sbjct: 337 ARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGW 395
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+ + D G+ YI R ++ G+ V P
Sbjct: 396 FRTGDLGHLDARGFLYITGRASDMYISGGSNVYP 429
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 82.3 bits (204), Expect = 2e-17
Identities = 68/284 (23%), Positives = 112/284 (39%), Gaps = 74/284 (26%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVL----- 111
SP+D A + Y+SG+TG PKGV ++H N N + I + + VL
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRN-ICNFLR-AEGAI---LGIRPGDR--VLQFASI 149
Query: 112 ----SVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL 167
S+L F G L V+ + + + +F + + + T+ + PSLL
Sbjct: 150 AFDVSILEIFTTLLAGGTL-VIPPEELRLEDLAEF--------LNRLRVTVAHLTPSLLA 200
Query: 168 FLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS----- 222
L P P S+R + G ++L+D++ + + + YG TE +
Sbjct: 201 LL--DPEDVP----SLRTLILGGEACPQALVDRWSKPRR-----LLNTYGPTEATVTATA 249
Query: 223 -------------PCTLYTRFAI-----PEAKLGSTGQLVM------LGYLKNEEATKE- 257
P YT + + P +G+ G+L + GYL E T E
Sbjct: 250 SRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEK 309
Query: 258 TVDSEGWL--------HTGDVAYYDEDGYFYIVDRTKELIKVKG 293
+ WL TGD+ Y EDG + R + +K++G
Sbjct: 310 FIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRG 353
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 82.3 bits (204), Expect = 2e-17
Identities = 65/271 (23%), Positives = 101/271 (37%), Gaps = 62/271 (22%)
Query: 67 SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
+SGTTG PKG + L +++ +P + ET L P FH G+ L
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAG-----LLSRVPFR--AGETTLLPAPMFHATGW-AHL 266
Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH--LASIR 184
+ M G ++ +F PE +E + K+K T L VVP +L + +S++
Sbjct: 267 TLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLK 326
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQG------YGMTETSPCTLYTRFAIPE---- 234
+ + + L + G YG TE + T+ A PE
Sbjct: 327 IIFVSGSALSPELATRA---------LEAFGPVLYNLYGSTEVAFATI----ATPEDLAE 373
Query: 235 --------------AKLGSTGQLVMLG-----YLKNEEA--------TKETVDSEGWLHT 267
L G V G ++ N K+ +D G L +
Sbjct: 374 APGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQIID--GLLSS 431
Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GDV Y+DEDG ++ R ++I G V P
Sbjct: 432 GDVGYFDEDGLLFVDGRDDDMIVSGGENVFP 462
Score = 38.0 bits (89), Expect = 0.007
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 283 DRTKELIK--VKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
++ IK V+ N +A YK + V FL+ +PRNP GKVL+ EL+
Sbjct: 503 ALDEDAIKDYVRDN-LARYK-VPRDVVFLDELPRNPTGKVLKRELR 546
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 82.3 bits (204), Expect = 3e-17
Identities = 88/342 (25%), Positives = 134/342 (39%), Gaps = 73/342 (21%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
P LLE K LP+ + ++VG + ++ F L+ +F + D A+L
Sbjct: 153 PALLE--RKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAIL 210
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCV--------HPDIVNHIPTSDTSQETVLSVLPF 116
Y+SG+TG PKGV HN A+ L+ H D V + T+D T S
Sbjct: 211 HYTSGSTGKPKGVLHVHN--AM-LQHYQTGKYVLDLHEDDV-YWCTADPGWVTGTS---- 262
Query: 117 FHIYG-----FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
YG NG NV+ G +F+PE + + YK T+ + P+ + L
Sbjct: 263 ---YGIFAPWLNGATNVI--DG------GRFSPERWYRILEDYKVTVWYTAPTAIRMLMG 311
Query: 172 HPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR 229
V L+S+R + P ++ ++ KV + I + MTET +
Sbjct: 312 AGDDLVKKYDLSSLRHILSVGEPLNPEVV-RWGMKVF--GLPIHDNWWMTETG-GIMIAN 367
Query: 230 FAIPEAKLGS------------------------TGQLV--------MLGYLKNEEATKE 257
+ + K GS G L M G N E +
Sbjct: 368 YPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYES 427
Query: 258 TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
+ W +GD AY DEDGYF+ R ++IK G +V P+
Sbjct: 428 YF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPF 468
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 81.8 bits (202), Expect = 4e-17
Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 45/281 (16%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
F + P D+A++ ++SGT +PKGV L+H N N C+ + P D + +
Sbjct: 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL--KFFS--PKED---DVM 227
Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMI-TIPKFTPETYIECVVKYKPTILFVVPSLLLFL 169
+S LP FH YGFN ++ G+ ++ P+ +E + + K T L P ++
Sbjct: 228 MSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI 287
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE--DITIRQGYGMTETSPCTLY 227
L S+R V G + D Q+ + I +RQGYG TE SP
Sbjct: 288 LKTAKKQESCLPSLRFVVIGG----DAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI 343
Query: 228 TRFAIP--EAKLG-------------------STGQ--LVML-------GYLKNEEATK- 256
P E+ +G S+G+ LV+ GYL +
Sbjct: 344 NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGF 403
Query: 257 ETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
+ E W TGD+ Y D G ++ R +K+ V+
Sbjct: 404 VELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVS 444
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 80.9 bits (200), Expect = 1e-16
Identities = 85/293 (29%), Positives = 123/293 (41%), Gaps = 73/293 (24%)
Query: 52 QLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT-SD-TSQET 109
Q+ + P D A++ ++SG+ G PKGV SH + N+EQ I T +D T +
Sbjct: 359 QVKQ-QPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQ---------IKTIADFTPNDR 408
Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETY---IECVVKYKPTILFVVPSLL 166
+S LP FH +G L ++ G + P +P Y E V T+LF + L
Sbjct: 409 FMSALPLFHSFGLTVGLFTPLLTGAEVFLYP--SPLHYRIVPELVYDRNCTVLFGTSTFL 466
Query: 167 LFLA--SHPAVTPEHLASIREVTCGA---APATKSL-IDKFKQKVQREDITIRQGYGMTE 220
A ++P A +R V GA +TK L DKF + I +GYG+TE
Sbjct: 467 GNYARFANPY----DFARLRYVVAGAEKLQESTKQLWQDKF-------GLRILEGYGVTE 515
Query: 221 TSPCTLYTRFAIP-EAKLGSTGQL--------------------------VMLGYLKNE- 252
+P +P AK G+ G++ +M GYL+ E
Sbjct: 516 CAPV---VSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEK 572
Query: 253 ----EA-TKETVDSE---GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
E T E E GW TGD+ +DE G+ I R K K+ G V+
Sbjct: 573 PGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVS 625
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 79.8 bits (197), Expect = 2e-16
Identities = 75/341 (21%), Positives = 128/341 (37%), Gaps = 79/341 (23%)
Query: 19 PNFRGTIVVGGE-------HDKSK-NIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGT 70
P R + +G H ++ ++ L+ + + P++ A + YS+GT
Sbjct: 133 PCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGT 192
Query: 71 TGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD----TSQETVLSVLPFFHIYGFNGIL 126
TG PKGV SH ++ L+ + T+D T E+ L +P +H+ + G+
Sbjct: 193 TGAPKGVVYSHR--SLYLQSL-------SLRTTDSLAVTHGESFLCCVPIYHVLSW-GVP 242
Query: 127 NVVMMYGMHMI-TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
M G ++ P + T + + P + VP+L + L H P S++E
Sbjct: 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQE 302
Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS----------------------- 222
+ G + LI +++ R + + +GMTETS
Sbjct: 303 IYVGGSAVPPILIKAWEE---RYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVS 359
Query: 223 ----PCTLYTRFAIPEAKLGST----------GQLVMLGYLKNEEATK---------ETV 259
P +L R + ST G V Y + E V
Sbjct: 360 QGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDV 419
Query: 260 D-------SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
+ ++GWL TGDV DG+ I DR +++I+ G
Sbjct: 420 EDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGG 460
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 78.4 bits (194), Expect = 5e-16
Identities = 73/303 (24%), Positives = 116/303 (38%), Gaps = 50/303 (16%)
Query: 14 IGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPP---DFQLPKISPNDLAMLPYSSGT 70
+ A +P + V G F L+ + P D + P+ +A ++SG+
Sbjct: 162 LAAVVPADVEVVAVRGAVPGRAAT-PFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGS 220
Query: 71 TGVPKGVKLSHNNCAVN---LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILN 127
TG+PK V +H N L Q P ++ LP+ H +G N L
Sbjct: 221 TGLPKAVINTHRMLCANQQMLAQT--------FPFLAEEPPVLVDWLPWNHTFGGNHNLG 272
Query: 128 VVMMY--GMHMITIPKFTPETYIECVVKYK---PTILFVVP----SLLLFLASHPAVTPE 178
+V+ Y G I K TP + E + + PT+ F VP L+ L A+
Sbjct: 273 IVL-YNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRR 331
Query: 179 HLASIREVTCGAAPATKSL---IDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP-- 233
+ ++ + A ++ + +D+ + E I + G GMTET+P +T +
Sbjct: 332 FFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRA 391
Query: 234 ----------EAKLGSTGQL---------VMLGYLKNEEATKETVDSEGWLHTGD-VAYY 273
E KL G V GY + E T E D EG+ +GD V +
Sbjct: 392 GNIGLPAPGCEVKLVPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451
Query: 274 DED 276
D
Sbjct: 452 DPA 454
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 77.9 bits (192), Expect = 8e-16
Identities = 69/319 (21%), Positives = 121/319 (37%), Gaps = 54/319 (16%)
Query: 14 IGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGV 73
+ + LP R IV G + ++ + S + P +++A S G+TG
Sbjct: 142 LQSKLPTLRNIIVAGQTGEAELFLW-----LESPAEPVKFPPTKSDEVAFFQLSGGSTGT 196
Query: 74 PKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFHIYGFN--GILNVVM 130
PK + +HN+ ++ + V +Q+T L LP H Y + G L V
Sbjct: 197 PKLIPRTHNDYYYSVRRSVE--------ICWLTQQTRYLCALPAAHNYPLSSPGALGVFY 248
Query: 131 MYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190
G ++ P +P + ++K T+ +VP + + + L+S++ + G
Sbjct: 249 AGGC-VVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGG 307
Query: 191 APATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL------------- 237
A + + + ++Q +GM E YTR P +
Sbjct: 308 AKFSAAAARRVPAVF---GCQLQQVFGMAEGLVN--YTRLDDPAEIIFTTQGRPMSPDDE 362
Query: 238 -------------GSTGQLV------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
G TG L+ GY K E D+EG+ +TGD+ +GY
Sbjct: 363 VRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGY 422
Query: 279 FYIVDRTKELIKVKGNQVA 297
+V R K+ I G ++A
Sbjct: 423 IVVVGRAKDQINRGGEKIA 441
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 77.6 bits (192), Expect = 8e-16
Identities = 79/336 (23%), Positives = 129/336 (38%), Gaps = 82/336 (24%)
Query: 5 PQLLEVGTKIGATLPN-FRGTIVVGGEHDKSKNIFGFK---QLVTSQPPDFQLPKISPND 60
L + ++ A LP +VV G GF+ + + +QP + +
Sbjct: 91 AALADTAAELAAELPAGVPLLLVVAGPVP------GFRSYEEALAAQPDT-PIADETAGA 143
Query: 61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFHI 119
ML YSSGTTG PKG+K + + ++ ++V LS P +H
Sbjct: 144 D-ML-YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGF--GMYGGPDSVYLSPAPLYHT 199
Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL---LLFLASHPAVT 176
++ + + G ++ + KF E + + +Y+ T +VP++ +L L
Sbjct: 200 APLRFGMSALAL-GGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKL------- 251
Query: 177 PEH------LASIREVTCGAAPATKSLIDKFKQKVQREDI-----TIRQGYGMTETSPCT 225
PE ++S+R AAP +V+R I I + Y +E T
Sbjct: 252 PEEVRARYDVSSLRVAIHAAAP--------CPVEVKRAMIDWWGPIIHEYYASSEGGGVT 303
Query: 226 LYTRFAIPE---AKLGSTGQLVM-----------------LG------------YLKNEE 253
+ T E A GS G+ V+ +G Y + E
Sbjct: 304 VIT----SEDWLAHPGSVGKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPE 359
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
T + GW+ GDV Y DEDGY Y+ DR ++I
Sbjct: 360 KTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMI 395
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 77.4 bits (190), Expect = 1e-15
Identities = 85/325 (26%), Positives = 134/325 (41%), Gaps = 86/325 (26%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
+ LP +D+ + Y+SGTTG PKGV +S+ + + + ++ + T ++
Sbjct: 215 YDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR--LLKSANAALTVKDVY 272
Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL--- 167
LS LP HI F+ ++ + I + + IE + + KPTI VP +L
Sbjct: 273 LSYLPLAHI--FDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVY 330
Query: 168 -----------FLA-------------------SHPAVTP--EHL----------ASIRE 185
FL SH +P + L ++R
Sbjct: 331 SGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRI 390
Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT----------------- 228
+ GAAP S ++ F + V + QGYG+TE+ T +
Sbjct: 391 ILSGAAPLA-SHVESFLRVVAC--CHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPN 447
Query: 229 ---RF-AIPEAK---LGST--------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
R ++PE + L ST G+ + GY K E+ TKE V +GWLHTGDV +
Sbjct: 448 VDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKE-VLIDGWLHTGDVGEW 506
Query: 274 DEDGYFYIVDRTKELIKV-KGNQVA 297
+G I+DR K + K+ +G VA
Sbjct: 507 QPNGSMKIIDRKKNIFKLSQGEYVA 531
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 77.3 bits (190), Expect = 1e-15
Identities = 58/284 (20%), Positives = 94/284 (33%), Gaps = 56/284 (19%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
+ + LA + Y+SG+TG PKGV++ H NL D + L+ L
Sbjct: 363 LLGDALAYIIYTSGSTGQPKGVRIEHRA-LANLLN----DAGARFGLDADDRVLALASLS 417
Query: 116 F----FHIYGFNGILN---VVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
F F I+G +L +V+ + P +E + T+L +VP LL
Sbjct: 418 FDASVFEIFG--ALLEGARLVLAPALLQ-----VDPAALLELLEAQGITVLLLVPLLLRL 470
Query: 169 LASHPAVT--PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL 226
L +R++ G +L+ + Q + YG TE +
Sbjct: 471 LLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAA-LARRLLNLYGPTEAT--LD 527
Query: 227 YTRFAIPEAKLGS--------------------------------TGQLVMLGYLKNEEA 254
F I G + LGYL +
Sbjct: 528 APSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDL 587
Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T E + TGD+A DG + R +K++G ++
Sbjct: 588 TAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIEL 631
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 76.4 bits (188), Expect = 2e-15
Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 46/269 (17%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+D+A++ ++SGTTG+PKG H + + + ++ PT D + + P
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRD-ILAICDAFPRHVLQ--PTPD---DVFIGSPPLAF 200
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
+G G++ + +G + + + TP ++ + +++ TILF P+ + A V
Sbjct: 201 TFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTA--YRAMLIKVKAF 258
Query: 179 HLASIREVTCGAAPATKSLIDK-FKQKVQREDITIRQGYGMTE------------TSPCT 225
++S+R+ A ++L K ++ +R + I G G TE P
Sbjct: 259 DISSLRK----CVSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKPGA 314
Query: 226 LYTRFAIP--EAKL----------GSTGQLVMLG-----YLKNEEATKETVDSEGWLHTG 268
T +P EA++ G G+L + G YL ++E +E V +GW TG
Sbjct: 315 --TGKPVPGYEARIVDDQGNEVPRGEAGRLAVRGPTGCRYL-DDERQQEYV-RDGWNVTG 370
Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
D+ DEDGYF+ V R+ ++I G +A
Sbjct: 371 DIFRQDEDGYFHYVARSDDMIVSAGYNIA 399
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 75.9 bits (188), Expect = 2e-15
Identities = 71/281 (25%), Positives = 111/281 (39%), Gaps = 60/281 (21%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
P+DLA + Y+SG+TG PKGV + H VNL + + T+ + VL F
Sbjct: 92 PDDLAYVIYTSGSTGRPKGVMVEHRG-LVNL---LA-WLQERYG--LTAGDRVL----QF 140
Query: 118 HIYGFN-GILNVVM--MYGMHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLAS 171
+ F+ + + + G ++ P PE E + +++ T+L +VPSLL L
Sbjct: 141 ASFSFDASVWEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLD 200
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY---- 227
P L S+R V G L+ ++++ + YG TET+ Y
Sbjct: 201 ALE--PAALPSLRLVIVGGEALPAELVRRWRELFP--GARLVNAYGPTETTVDVTYHEVD 256
Query: 228 -----------------TRFAIPEAKL-----GSTGQL------VMLGYLKNEEATKE-- 257
TR + + L G G+L V GYL E T E
Sbjct: 257 PDDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERF 316
Query: 258 -----TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
E TGD+A + DG + R + +K++G
Sbjct: 317 VPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRG 357
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 75.1 bits (185), Expect = 6e-15
Identities = 73/298 (24%), Positives = 111/298 (37%), Gaps = 73/298 (24%)
Query: 48 PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCA---VNLEQ--CVHPDIVNHIPT 102
P F++ P+DL ML ++SGT+G PK V+ +H A V L Q + PD
Sbjct: 143 EPPFRVA--DPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPD------- 193
Query: 103 SDTSQETVLSVLPFFHIYGFNGIL---NVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
+ +P FH N ++ V + G + KF+ ++ V +Y T
Sbjct: 194 -----DVCYVSMPLFHS---NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYA 245
Query: 160 FVVPSLLLFLASHPAVTPEHLASIREV--TCGAAPATKSLIDKFKQKVQREDITIRQGYG 217
V L ++ + P + +R V GA I +F +R + G+G
Sbjct: 246 NYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGD----IARF---ARRFGCVVVDGFG 298
Query: 218 MTE----------TSPCTL------------YTRFAIPEAKLGS---------TGQLVML 246
TE T P L T P A+ G+LV
Sbjct: 299 STEGGVAITRTPDTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNT 358
Query: 247 -------GYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
GY + EA E + G +GD+AY D DGY Y R + ++V G +
Sbjct: 359 AGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLG 415
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 73.3 bits (180), Expect = 3e-14
Identities = 63/265 (23%), Positives = 107/265 (40%), Gaps = 50/265 (18%)
Query: 67 SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
+SGTTG PKG + S L+ I++ P ++E + V P FH +GF+ ++
Sbjct: 204 TSGTTGTPKGARRSGPGGIGTLKA-----ILDRTPWR--AEEPTVIVAPMFHAWGFSQLV 256
Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIR 184
+ ++T +F PE ++ + +++ T L VVP + + PA S+R
Sbjct: 257 LAASL-ACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLR 315
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT----RFAI------PE 234
+ ++ F + D+ I Y TE T R A E
Sbjct: 316 FAAASGSRMRPDVVIAFMDQFG--DV-IYNNYNATEAGMIATATPADLRAAPDTAGRPAE 372
Query: 235 AKL-------------GSTGQLVMLGYLKNEE--------ATKETVDSEGWLHTGDVAYY 273
G G + +++N+ +TK+ D G++ +GDV Y
Sbjct: 373 GTEIRILDQDFREVPTGEVGTI----FVRNDTQFDGYTSGSTKDFHD--GFMASGDVGYL 426
Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
DE+G ++V R E+I G V P
Sbjct: 427 DENGRLFVVGRDDEMIVSGGENVYP 451
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 72.5 bits (178), Expect = 3e-14
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 63/286 (22%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
+DL Y+SGTTG+PKGV + N A + + I D + V F+
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAA-----FYAYMRYAI---DLRDDDV-----FW 133
Query: 118 HI------YGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLA 170
+I YG + + G+ + + FT E + + + T P+ L
Sbjct: 134 NIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLM 193
Query: 171 SH--PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLY 227
+ A L +R + P ++ F+ + +TI YG TET P +
Sbjct: 194 AAGADAAARIKL-KLRVASSAGEPLNPEVVRWFQANL---GVTIHDHYGQTETGMPVGNH 249
Query: 228 TRFAIPEAKLGSTG------QLVML----------------------------GYLKNEE 253
A E + GS G ++ +L GY + E
Sbjct: 250 HALAH-EVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPE 308
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
T E + W TGD+ DEDGYF+ + R ++I G ++ P+
Sbjct: 309 KTAELIAG-RWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPF 353
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 72.4 bits (178), Expect = 5e-14
Identities = 76/332 (22%), Positives = 115/332 (34%), Gaps = 80/332 (24%)
Query: 8 LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYS 67
L+V + P R +V+ G+ + + G+ + V P + S ML YS
Sbjct: 107 LDVARALLKQCPGVRHRLVLDGD-GELEGFVGYAEAVAGLPAT-PIADESLGT-DML-YS 162
Query: 68 SGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD--------TSQETVLSVLPFFHI 119
SGTTG PKG+K +P + S LS P +H
Sbjct: 163 SGTTGRPKGIK----------RPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHS 212
Query: 120 --YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
+V+ G +I + F E Y+ + +Y T +VP++ + P
Sbjct: 213 APQRAVM---LVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR 269
Query: 178 EH--LASIREVTCGAAPATKSLIDKFKQKVQREDI-----TIRQGYGMTETSPCTLYTRF 230
+ L+S+ AAP +V+ + I I + Y TE T
Sbjct: 270 DKYDLSSLEVAIHAAAPC--------PPQVKEQMIDWWGPIIHEYYAATEGLGFT----A 317
Query: 231 AIPE---AKLGSTGQLVMLG-----------------------------YLKNEEATKET 258
E A G+ G+ M G YL + T E
Sbjct: 318 CDSEEWLAHPGTVGR-AMFGDLHILDDDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEA 376
Query: 259 VDSEG-WLHTGDVAYYDEDGYFYIVDRTKELI 289
+G W GD+ Y DEDGY Y+ DR +I
Sbjct: 377 RHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI 408
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 70.8 bits (174), Expect = 1e-13
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 70/275 (25%)
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV------ 110
S +DL ML Y+ GTTG+PKGV + L PD PT + + V
Sbjct: 2 SADDLYML-YTGGTTGMPKGVMWRQEDIFRVLL--GGPDFATGEPTLEELAKQVAAGGAG 58
Query: 111 ---LSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVV--- 162
L P H G L+ + G ++ +P KF P+ V K++ L +V
Sbjct: 59 TRFLPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDA 117
Query: 163 ---PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE------DITIR 213
P L + A L+S+R ++ A + +V++ ++ +
Sbjct: 118 FARP----LLEALEAAGRYDLSSLRAISSSGAM--------WSPEVKQGLLELLPNLALV 165
Query: 214 QGYGMTETSPCTLYT----------RFAI-PEAKL------------GSTGQL-----VM 245
G +ET +F + P+ + G G + V
Sbjct: 166 DALGASETGGGGSSVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVP 225
Query: 246 LGYLKNEEATKET---VDSEGWLHTGDVAYYDEDG 277
LGY K+ E T +T +D + GD A + DG
Sbjct: 226 LGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADG 260
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 69.7 bits (170), Expect = 4e-13
Identities = 70/282 (24%), Positives = 108/282 (38%), Gaps = 56/282 (19%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+D L Y+SGTT PKGV +SH ++ + + P L LP FH
Sbjct: 186 HDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPV-------YLWTLPMFH 238
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
G+ G + PE Y + + + T + VP++ L ++
Sbjct: 239 CNGWTFTWGTAARGGTSVCMRHVTAPEIY-KNIEMHNVTHMCCVPTVFNILLKGNSLDLS 297
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA-----IP 233
+ V G +P +L+ +KVQR + YG+TE + L+ + +P
Sbjct: 298 PRSGPVHVLTGGSPPPAALV----KKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLP 353
Query: 234 E-------------------------------AKLGST-------GQLVMLGYLKNEEAT 255
E + G T G +M GYLKN +AT
Sbjct: 354 ENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413
Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
E GWL+TGDV DG+ I DR+K++I G ++
Sbjct: 414 SEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENIS 454
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 68.9 bits (168), Expect = 6e-13
Identities = 82/300 (27%), Positives = 120/300 (40%), Gaps = 67/300 (22%)
Query: 49 PDFQLPKISPN-----DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV-----N 98
D + + LAM+ ++SGTTG PK V L+ N PDI+ N
Sbjct: 155 LDAASLAGNADQGSEDPLAMI-FTSGTTGEPKAVLLA------NRTFFAVPDILQKEGLN 207
Query: 99 HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTI 158
+ ET S LP HI G IL +M+G +T + T + +E +
Sbjct: 208 WVTWVVG--ETTYSPLPATHIGGLWWILTC-LMHGGLCVTGGENT-TSLLEILTTNAVAT 263
Query: 159 LFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM 218
+VP+LL L S + S+R V G + A + + +F ++ + Q YG+
Sbjct: 264 TCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADV-RF---IEATGVRTAQVYGL 319
Query: 219 TETSPCT-------------------------LYTRFAIPE---------AKLGSTGQLV 244
+ET CT + A + S G L
Sbjct: 320 SETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLW 378
Query: 245 ------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
MLGY N E T E V +GW++TGD+ EDG+FYI R+ E+I G +AP
Sbjct: 379 IKSPANMLGYWNNPERTAE-VLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAP 437
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 68.8 bits (169), Expect = 8e-13
Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 44/231 (19%)
Query: 25 IVVGGEHDKSKNIFGFKQLVT----SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLS 80
+ VGG + ++G L T F + ++P+D+A + ++SG+TG PKGV +
Sbjct: 141 VTVGG-----RLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYT 195
Query: 81 HNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP 140
H +E + E L P F + + GM + IP
Sbjct: 196 HGMFEAQIEA-----LREDYG--IEPGEIDLPTFPLF------ALFGPAL--GMTSV-IP 239
Query: 141 KF--------TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP 192
P + +Y T LF P+LL L + L S+R V AP
Sbjct: 240 DMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAP 299
Query: 193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL 243
++I++F + + D I YG TE A+P + + S L
Sbjct: 300 VPIAVIERF-RAMLPPDAEILTPYGATE----------ALPISSIESREIL 339
Score = 28.7 bits (65), Expect = 4.5
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 241 GQLVMLGYLKNEEATKET--VDSEG--WLHTGDVAYYDEDGYF 279
G +V Y EAT+ D +G W GD+ Y D G
Sbjct: 394 GPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRL 436
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 68.2 bits (167), Expect = 8e-13
Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 78/291 (26%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNN---------CAVNLEQCVHPDIVNHIPTSDTSQE 108
+D +L ++SGTTG+PK V +H + + L+ P ++ +S +
Sbjct: 83 ADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQ----PGDIHLNISSPGWAK 138
Query: 109 TVLSVLPFFH-------IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
S FF ++G N P+F Y+ + K+ T
Sbjct: 139 HAWS--SFFAPWNAGATVFGIN---------------YPRFDARRYLGALEKFGVTTFCA 181
Query: 162 VPSLL-LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
P++ +F+ A L RE P +I++ K+ +TIR GYG TE
Sbjct: 182 PPTVWRMFIQQDLAQYDVRL---REAVSAGEPLNPEVIERVKKAW---GLTIRDGYGQTE 235
Query: 221 TS------------------PCTLYTRFAIPEA--------------KLGSTGQLVMLGY 248
T+ P Y R + + LG +MLGY
Sbjct: 236 TTAMIGNSPGQKVKPGSMGRPLPGY-RVVLLDDEGKEIPVTEGEIALDLGDRPIGLMLGY 294
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
+ + E T G+ TGD AY DEDGY + V R ++ K +++P+
Sbjct: 295 MGDPEKTAA-AFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPF 344
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 68.5 bits (168), Expect = 1e-12
Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 55/295 (18%)
Query: 25 IVVGGEHDKSKNIFGFKQLVTSQPPDF---QLPKISPNDLAMLPYSSGTTGVPKGVKLSH 81
+ V G + +I F L + P + I+P+ +A ++SG+TG+PK V +
Sbjct: 184 VHVTGPGEGIASI-AFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ 242
Query: 82 NNCAVNL---EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM-I 137
N+ EQ + P S L +P+ H G N N ++ G + I
Sbjct: 243 RMMCANIAMQEQLRPREPDPPPPVS-------LDWMPWNHTMGGNANFNGLLWGGGTLYI 295
Query: 138 TIPKFTP---ETYIECVVKYKPTILFVVPSLLLFLASH----PAVTPEHLASIREVTCGA 190
K P E I + + PT+ VP+ LA A+ ++R + G
Sbjct: 296 DDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGG 355
Query: 191 APATKSLIDKFKQKVQR-------EDITIRQGYGMTETSPCTLYTRFA--------IP-- 233
A +L D +++Q I GYG TET+P T T + +P
Sbjct: 356 A----TLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLP 411
Query: 234 --EAKL---GST------GQLVMLGYLKNEEATKETVDSEGWLHTGDVA-YYDED 276
E KL G G V GY K+ E T D EG+ GD A + D D
Sbjct: 412 GVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 68.2 bits (167), Expect = 1e-12
Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 57/283 (20%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNL----EQCVHPDIVNHIPTSDTSQET 109
P ++A S GTTG PK + +HN+ ++ E C Q+T
Sbjct: 184 PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC------------GFDQQT 231
Query: 110 V-LSVLPFFHIYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL 166
V L LP H + + G L V + G ++ P +PE + ++ T+ +VP L
Sbjct: 232 VYLCALPAAHNFPLSSPGALGV-FLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLA 290
Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL 226
L+S+R + G A + +L + + ++Q +GM E
Sbjct: 291 SLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL---GCQLQQVFGMAEGLVN-- 345
Query: 227 YTRFAIPEAKL--------------------------GSTGQLV------MLGYLKNEEA 254
YTR P + G G+L+ + GY + E
Sbjct: 346 YTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEH 405
Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
D++G+ +GD+ D DGY + R K+ I G ++A
Sbjct: 406 NARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIA 448
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 67.6 bits (166), Expect = 2e-12
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 48 PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ 107
D++ P P+D+A L Y+SG+TG PKGV ++H N NL I
Sbjct: 137 AADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRA-----IARA--FGLDPD 189
Query: 108 ETVLSVLPFFH----IYG-----FNGILNVVMM 131
+ +S LP +H I G + G VV+M
Sbjct: 190 DVGVSWLPLYHDMGLIGGLLQPLYAGFP-VVLM 221
Score = 59.5 bits (145), Expect = 9e-10
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 244 VMLGYLKNEEATKET------VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
V GY EAT ET D GWL TGD+ + DG Y+ R K+LI ++G
Sbjct: 392 VAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRG 446
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 67.6 bits (165), Expect = 2e-12
Identities = 71/271 (26%), Positives = 105/271 (38%), Gaps = 59/271 (21%)
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
L Y+SGTT PKGV L H + + ++ + L LP FH G+
Sbjct: 200 LGYTSGTTASPKGVVLHHRGAYL---MALSNALIWGMNEG----AVYLWTLPMFHCNGWC 252
Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV-TPEHLAS 182
+ + G + I + + T + + Y T P +L + + P T L
Sbjct: 253 FTWTLAALCGTN-ICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPR 311
Query: 183 IREV-TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCT--------------- 225
+ V T GAAP S++ +K R + YG++ET P T
Sbjct: 312 VVHVMTAGAAP-PPSVLFAMSEKGFR----VTHTYGLSETYGPSTVCAWKPEWDSLPPEE 366
Query: 226 ---LYTRFAI-----------------PEAKLGST-------GQLVMLGYLKNEEATKET 258
L R + P G T G +VM GYLKN +A +E
Sbjct: 367 QARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEA 426
Query: 259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
+ GW H+GD+ DGY I DR+K++I
Sbjct: 427 F-ANGWFHSGDLGVKHPDGYIEIKDRSKDII 456
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 67.0 bits (164), Expect = 2e-12
Identities = 67/305 (21%), Positives = 109/305 (35%), Gaps = 68/305 (22%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCA----VNLEQCVHPD 95
+ +LV + ++ D ML ++SGTTG PK V+ SH A E+
Sbjct: 131 YAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGL-- 188
Query: 96 IVNHIPTSDTSQETVLSVLPFFHIYGFNGIL---NVVMMYGMHMITIPKFTPETYIECVV 152
T + +P FH N ++ + G + KF+ +++ V
Sbjct: 189 ---------TRDDVCYVSMPLFH---SNAVMAGWAPAVASGAAVALPAKFSASGFLDDVR 236
Query: 153 KYKPTIL-FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211
+Y T +V L LA TPE + A ++ + +R
Sbjct: 237 RYGATYFNYVGKPLAYILA-----TPER-PDDADNPLRVAFGNEASPRDIAEFSRRFGCQ 290
Query: 212 IRQGYGMTE----------TSPCTL------------YTRFAIPEAKLGSTGQLV----- 244
+ GYG +E T P ++ T A+ + G L+
Sbjct: 291 VEDGYGSSEGAVIVVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA 350
Query: 245 ------------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
GY N EAT E + G +GD+AY D DG+ Y RT + ++V
Sbjct: 351 IGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVD 409
Query: 293 GNQVA 297
G ++
Sbjct: 410 GENLS 414
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 66.3 bits (162), Expect = 5e-12
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 33/123 (26%)
Query: 211 TIRQGYGMTETS--------------------PCTLYTRFAIPEAKLGST---------- 240
+ +GYGMTETS P +PE S
Sbjct: 403 RVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEIC 462
Query: 241 --GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA 297
G ++ GY K+E T+E +D +GWLHTGD+ + G I+DR K + K+ +G +A
Sbjct: 463 VRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIA 522
Query: 298 PYK 300
P K
Sbjct: 523 PEK 525
Score = 52.0 bits (125), Expect = 2e-07
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 2 CNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKN--------IFGFKQLVT---SQPPD 50
+PQ L + +P+ R +VVGG + + I + +L+ S P
Sbjct: 155 FCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQP 214
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
F+ PK P D+A + Y+SGTTG PKGV L+H N N + SD
Sbjct: 215 FRPPK--PEDVATICYTSGTTGTPKGVVLTHGNLIAN---VAGSSLSTKFYPSDVH---- 265
Query: 111 LSVLPFFHIY 120
+S LP HIY
Sbjct: 266 ISYLPLAHIY 275
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 65.4 bits (160), Expect = 1e-11
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 30/107 (28%)
Query: 214 QGYGMTETSPC-------TLYTRFAIP-----EAKLGST------------------GQL 243
QG+G+TET C L E KL T G
Sbjct: 457 QGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPF 516
Query: 244 VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK 290
+ GY K EE T+E +D +GW HTGDV +G I+ R K L K
Sbjct: 517 LFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAK 563
Score = 50.0 bits (120), Expect = 1e-06
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
+DLA++ Y+SGTTG PKGV +H + + +N + ET S LP H
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDR--LNDLIGPPEEDETYCSYLPLAH 321
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVK-------YKPTILFVVP 163
I F G+ N+ + G I +P T + + ++P L VP
Sbjct: 322 IMEF-GVTNIFLARGAL---IGFGSPRTLTDTFARPHGDLTEFRPVFLIGVP 369
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 64.5 bits (157), Expect = 2e-11
Identities = 79/326 (24%), Positives = 125/326 (38%), Gaps = 86/326 (26%)
Query: 50 DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
D +LP D+ + Y+SGTTG PKGV L N A+ E ++ T +++
Sbjct: 211 DCELPPKQKTDICTIMYTSGTTGEPKGVIL--TNRAIIAEVLSTDHLLKVTDRVATEEDS 268
Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL--- 166
S LP H+Y + ++ + I + +E V KPTI VP +
Sbjct: 269 YFSYLPLAHVY--DQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRI 326
Query: 167 -----------------LF-------LASHPAVTPEHLAS------------------IR 184
LF L + + AS +R
Sbjct: 327 YTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVR 386
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE------TSPCTLYTRFA---IP-- 233
+ GAAP + +++F + + QGYG+TE TS +++ +P
Sbjct: 387 LLLSGAAPLPRH-VEEFLRVTSCS--VLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMT 443
Query: 234 --EAKLGST-------------------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAY 272
EA+L S G + GY K ++ T+E V +GW HTGD+
Sbjct: 444 TIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEE-VLIDGWFHTGDIGE 502
Query: 273 YDEDGYFYIVDRTKELIKV-KGNQVA 297
+ +G I+DR K + K+ +G VA
Sbjct: 503 WQPNGAMKIIDRKKNIFKLSQGEYVA 528
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 64.1 bits (156), Expect = 2e-11
Identities = 77/325 (23%), Positives = 126/325 (38%), Gaps = 55/325 (16%)
Query: 16 ATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVP 74
T + T+ VGG+ S ++P P P+ D AM+ ++ GTTG+P
Sbjct: 132 PTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLP 191
Query: 75 KGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM 134
K V +H N A + V I+ S ++ ++V+P +H +G L + G
Sbjct: 192 KMVPWTHANIASS----VR-AIITGYRLSP--RDATVAVMPLYHGHGLIAALLATLASG- 243
Query: 135 HMITIP---KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCG 189
+ +P +F+ T+ + + T VP++ L A + A++R +
Sbjct: 244 GAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSC 303
Query: 190 AAPATKSLIDKFKQKVQRE-DITIRQGYGMTET-----------SPCT--------LYTR 229
+AP T Q +Q E + +GMTE T L R
Sbjct: 304 SAPLTAET----AQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR 359
Query: 230 FAIPEAKL-GSTGQ---------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
+ ++ GS G V+ GYL + T ++GWL TGD+
Sbjct: 360 STGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSL 418
Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
G I R KELI G +++P
Sbjct: 419 SAAGDLSIRGRIKELINRGGEKISP 443
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 63.2 bits (154), Expect = 5e-11
Identities = 59/288 (20%), Positives = 95/288 (32%), Gaps = 75/288 (26%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
D A + ++SG+TG PKGV +H A + D + + + L+ P F
Sbjct: 86 DPAAILFTSGSTGPPKGVVYTHRTFAAQI------DALRSL-YGIREGDRDLAAFPPF-- 136
Query: 120 YGFNGILNVVMMYGMHMITIPKF--------TPETYIECVVKYKPTILFVVPSLLLFLAS 171
+ + G+ + IP P + + + + +F P+LL +A
Sbjct: 137 ----ALFGPAL--GVTTV-IPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVAR 189
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------ 225
+ L S+R V AP L+ +F + + I YG TE P
Sbjct: 190 YCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLM-PEAEIHTPYGATEALPVASIEGRE 248
Query: 226 -LYTRFAIPEA----------------------------------KLGSTGQLVMLG--- 247
L PEA G G++++ G
Sbjct: 249 VLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHV 308
Query: 248 ---YLKNEEATKET--VDSEGWLH-TGDVAYYDEDGYFYIVDRTKELI 289
Y EATK D H GD+ Y+D+ G + R +
Sbjct: 309 TREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRV 356
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 63.2 bits (154), Expect = 5e-11
Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 69/331 (20%)
Query: 16 ATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKIS---------PNDLAMLPY 66
LP R VV D + Q P P+ A+L
Sbjct: 132 DALPPLRAIAVVDDAADATPAPAPG---ARVQLFALPDPAPPAAAGERAADPDAGALLFT 188
Query: 67 SSGTTGVPKGV-----KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYG 121
+SGTT PK V L + A+ P V +L+ LPF ++G
Sbjct: 189 TSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAV------------LLAALPFCGVFG 236
Query: 122 FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL-LFLASHPAVTPEHL 180
F+ +L + G ++ P F + +++ T F +L L +
Sbjct: 237 FSTLLGA-LAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERAD--F 293
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE----------TSPCTLYT-- 228
S R G A +L + + + + YG +E T P ++
Sbjct: 294 PSAR--LFGFASFAPAL-GELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEG 350
Query: 229 --RFAIPEAKL-------------GSTGQL------VMLGYLKNEEATKETVDSEGWLHT 267
R A PEA++ G +G++ +M GYL N +AT + +G+ T
Sbjct: 351 GGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRT 410
Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
GD+ Y DG F R + +++ G V P
Sbjct: 411 GDLGYTRGDGQFVYQTRMGDSLRLGGFLVNP 441
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 61.8 bits (151), Expect = 1e-10
Identities = 69/301 (22%), Positives = 104/301 (34%), Gaps = 81/301 (26%)
Query: 47 QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS 106
+ P + +DLA + Y+SG+TG PKGV + H V L + + + +
Sbjct: 115 EDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRG-VVRL--VRNTNYI-----ALDP 166
Query: 107 QETVL--SVLPF----FHIYGFNGILNVVMMYGMHMITIPKFTPET------YIECVVKY 154
+ L S L F F I+G +LN G ++ I K T I
Sbjct: 167 DDRFLQLSPLSFDASTFEIWG--ALLN-----GGRLVLIDKETLLDPDRLARLIAE---Q 216
Query: 155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQREDITI 212
T+L++ +L L PE LA +R++ G + + + + +
Sbjct: 217 GVTVLWLTAALFNQLVDE---DPEALAGLRQLLVGGDVLSP--AHVRRVLAACPG--LRL 269
Query: 213 RQGYGMTETSPCTLYTRFAIPEAK-------------------LGSTGQLV--------- 244
GYG TE + T T I L GQ V
Sbjct: 270 INGYGPTENT--TFSTCHVITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPIGVPGELY 327
Query: 245 ------MLGYLKNEEATKE------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
LGYL E T E E TGD+A + DG + R +K++
Sbjct: 328 VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR 387
Query: 293 G 293
G
Sbjct: 388 G 388
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 61.7 bits (150), Expect = 2e-10
Identities = 74/295 (25%), Positives = 107/295 (36%), Gaps = 82/295 (27%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI-PTSDTSQETVLSVL 114
++P +LA + Y+SG+TG PKG H +VN + T + Q + V+
Sbjct: 1715 LAPQNLAYVIYTSGSTGRPKGAGNRHGA------------LVNRLCATQEAYQLSAADVV 1762
Query: 115 PFFHIYGF------------NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV 162
F + F NG V+ G H PE I+ + + + T L V
Sbjct: 1763 LQFTSFAFDVSVWELFWPLINGARLVIAPPGAHR------DPEQLIQLIERQQVTTLHFV 1816
Query: 163 PSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQR-EDITIRQGYGMT 219
PS+L L EH S+R V CG A + + ++R D + YG T
Sbjct: 1817 PSMLQQLLQMDEQV-EHPLSLRRVVCGGEALEV-----EALRPWLERLPDTGLFNLYGPT 1870
Query: 220 ETS------PCTL-------YTRFAIPEAKL--------------GSTGQL------VML 246
ET+ C P A L G G+L +
Sbjct: 1871 ETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLAR 1930
Query: 247 GYLKNEEATKE--------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
GYL T E TV S + TGD+A Y DG + R +K++G
Sbjct: 1931 GYLNRPALTAERFVADPFGTVGSRLY-RTGDLARYRADGVIEYLGRIDHQVKIRG 1984
Score = 52.9 bits (127), Expect = 2e-07
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 23/187 (12%)
Query: 43 LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP- 101
L+ + P++LA + Y+SG+TG PKGV +SH + N++
Sbjct: 640 LLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGA------------LANYVCV 687
Query: 102 TSDTSQETVLSVLPFFHIYGFNG---ILNVVMMYGMHMITIPK---FTPETYIECVVKYK 155
++ Q + + F+ L + G + +P E + +
Sbjct: 688 IAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQG 747
Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
T+L +VPS L L V R + CG L+ + + +
Sbjct: 748 VTVLKIVPSHLQALLQASRVAL--PRPQRALVCGGEALQVDLLARVRAL--GPGARLINH 803
Query: 216 YGMTETS 222
YG TET+
Sbjct: 804 YGPTETT 810
Score = 46.3 bits (110), Expect = 2e-05
Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 32/179 (17%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGVKLSH----NNCAVNLEQC---VHPDIVNHIPTS-DT 105
++ +LA + Y+SG+TG PKGV + H N+ E + ++ + S D
Sbjct: 3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDG 3291
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK--FTPETYIECVVKYKPTILFVVP 163
+QE L L + G ++ + PE + + ++ +I P
Sbjct: 3292 AQERFLWTL----------------ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPP 3335
Query: 164 SLL-LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
+ L F AS+ G + ++ K+K++ +T GYG TE
Sbjct: 3336 AYLQQFAEDA---GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLT--NGYGPTEA 3389
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 60.9 bits (148), Expect = 2e-10
Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 73/302 (24%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
+ P+D A L Y+SGTTG+PKG +S V + D+ + + +P
Sbjct: 84 VDPDDPAALIYTSGTTGLPKGCAISWRRTLVT-SNPLSHDLNL------QFPDRTYTCMP 136
Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
+H L + G + KF+ + + V + TI+ V L +L + P
Sbjct: 137 LYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPPS 196
Query: 176 TPEHLASIREVTC-GAAPATKSLIDKFKQKVQREDITIRQGYGMTE-------------- 220
+ +R G P + ++F+++ I + Y TE
Sbjct: 197 PYDRDHKVRVAYGNGLRP---DIWERFRERFNVP--EIGEFYAATEGVFAFTNHNVGPFT 251
Query: 221 TSPCTLY-----------------------------TRFAIPEAKLGSTGQLVM------ 245
T F + A +G G+++
Sbjct: 252 AGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCV-RAPVGEPGEMLGRVRFKN 310
Query: 246 ----LGYLKNEEATKETV------DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
GYLKNE+AT+ + + W TGD+ D DG +Y +DR + + K
Sbjct: 311 RELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSEN 370
Query: 296 VA 297
V+
Sbjct: 371 VS 372
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 60.4 bits (147), Expect = 5e-10
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 232 IPEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL 288
+PE +G G +M GY ++EE+ + ++GWL TGD+ Y DGY YI R K+L
Sbjct: 406 LPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYL-LDGYLYITGRAKDL 463
Query: 289 IKVKGNQVAP 298
I + G + P
Sbjct: 464 IIINGRNIWP 473
Score = 48.5 bits (116), Expect = 3e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 49 PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQE 108
D LP+ +P+D+A L YSSG+T P+GV ++H NL H + + D
Sbjct: 166 ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL--KVRPGDRC-- 221
Query: 109 TVLSVLPFFHIYGFNGIL 126
+S LPF+H G G L
Sbjct: 222 --VSWLPFYHDMGLVGFL 237
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 59.8 bits (145), Expect = 6e-10
Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 46/271 (16%)
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH--IYGFN 123
Y+SGTTG K V S+ V L+ I IPT S ++ V FH +YG
Sbjct: 261 YTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVS--FHGFLYGSL 318
Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL-ASHPAVTPEH--- 179
+ N +M+ I K + + K+K T +P + +L + P T
Sbjct: 319 SLGNTFVMFEGG-IIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY 377
Query: 180 -LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL--YTRFAIPEAK 236
L++++E+ CG +S+ + + K++ + +GYG TE L Y IP
Sbjct: 378 DLSNLKEIWCGGEVIEESIPEYIENKLKIKSS---RGYGQTEIGITYLYCYGHINIPYNA 434
Query: 237 LG---------------------STGQLVM---------LGYLKNEEATKETVDS-EGWL 265
G G++ + KN+E K+ G+
Sbjct: 435 TGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYY 494
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
++GD+ + DE+GY+ IV R+ + IK+ GN+V
Sbjct: 495 NSGDLGFKDENGYYTIVSRSDDQIKISGNKV 525
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 59.1 bits (144), Expect = 1e-09
Identities = 65/314 (20%), Positives = 108/314 (34%), Gaps = 66/314 (21%)
Query: 18 LPNFRGTIVVGGEHDKSKNIFG--FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPK 75
LP R +VV ++ + + P+ + SP+DL +L Y+ GTTG+PK
Sbjct: 121 LPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLYLL-YTGGTTGMPK 179
Query: 76 GVKLSHNNC-AVNLEQCVHPDIVNHIPTSDTSQE----------TVLSVLPFFHIYGFNG 124
GV + V L D P D + P H G
Sbjct: 180 GVMWRQEDIFRVLLGG---RDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA 236
Query: 125 ILNVVMMYGMHMI-TIPKFTPETYIECVVKYKPTILFVV------PSLLLFLASHPAVTP 177
+ ++ +F + + + K ++ +V P L + A P
Sbjct: 237 AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARP----LLDALEARGP 292
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQR--EDITIRQGYGMTET-----------SPC 224
L+S+ + G A + S+ K+ + ++ + G +ET +
Sbjct: 293 YDLSSLFAIASGGALFSPSV----KEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVH 348
Query: 225 TLYTRFAI-PEAKL------------GSTGQL-----VMLGYLKNEEATKET---VDSEG 263
T RF I P + G G + + LGY K+ E T ET +D
Sbjct: 349 TGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVR 408
Query: 264 WLHTGDVAYYDEDG 277
+ GD A + DG
Sbjct: 409 YAIPGDRARVEADG 422
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 58.3 bits (141), Expect = 2e-09
Identities = 68/328 (20%), Positives = 132/328 (40%), Gaps = 60/328 (18%)
Query: 14 IGATLPNFRGTIVVGGEHDKSKNIFG-FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
I + P+ + ++V + S++ + FK+L+ + K + + ++SGTTG
Sbjct: 131 IASECPSLKTKLLVS---EHSRDGWLNFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTG 187
Query: 73 VPKGVKLSHNNCAVNLEQC-------VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGI 125
PK + SH++ + L+ DI+ ++ + + + S+ F+
Sbjct: 188 FPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSL--------FSPW 239
Query: 126 LNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
+ ++ H+ P+F P+ ++ + KY T P++ L +T S+R
Sbjct: 240 IQGACVFVHHL---PRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRH 295
Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLYTRFAI------------ 232
G P +++++K + + + +GYG TET C + I
Sbjct: 296 CVTGGEPLNPEVLEQWKAQTGLD---LYEGYGQTETGLICANFKGMKIKPGSMGKASPPY 352
Query: 233 ------------PEAKLGSTGQLV--------MLGYLKNEEATKETVDSEGWLHTGDVAY 272
P G G V Y+ N E T T+ + ++ TGD
Sbjct: 353 DVQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGI 411
Query: 273 YDEDGYFYIVDRTKELIKVKGNQVAPYK 300
DEDGYF+ V R ++I G ++ P++
Sbjct: 412 MDEDGYFWFVGRADDVINSSGYRIGPFE 439
Score = 30.2 bits (68), Expect = 1.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 285 TKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
TKEL + + APYK V+F++ +P+ GK+ RNEL+
Sbjct: 486 TKELQEHVKSVTAPYK-YPRKVEFVQELPKTITGKIKRNELR 526
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 58.0 bits (141), Expect = 2e-09
Identities = 67/294 (22%), Positives = 108/294 (36%), Gaps = 55/294 (18%)
Query: 47 QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS 106
+ P P++ P+DLA + ++SG+TG PKGV ++H AVN D+
Sbjct: 114 ESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRA-AVNTIL----DVNRRFGVGPAD 168
Query: 107 QETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP---KFTPETYIECVVKYKPTILFVV 162
+ LS L F +Y G L+ G ++ + P+ + E V ++ T+ V
Sbjct: 169 RVLALSALHFDLSVYDIFGALSA----GAALVLPDEARRRDPDHWAELVQRHGVTVWNSV 224
Query: 163 PSLLLFLASHPAVTPEHLASIREVTCGA--APATKSLIDKFKQKVQREDITIRQGYGMTE 220
P+L+ L ++ L S+R V P L + + + G TE
Sbjct: 225 PALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLD--LPRRLRA--LAPGARLVSLGGATE 280
Query: 221 TSP-CTLY--------------------TRFAIPEAKL-----GSTGQL------VMLGY 248
S Y +F + + G+L V LGY
Sbjct: 281 ASIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVALGY 340
Query: 249 LKNEEATKET----VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ E T E E TGD+ Y DG + R +K++G +V
Sbjct: 341 WGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVEL 394
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 58.8 bits (142), Expect = 2e-09
Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 61/285 (21%)
Query: 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-----TSQET 109
++ P++LA + Y+SG+TG PKGV +SH + +VNH+ + T +
Sbjct: 4690 RLHPDNLAYVIYTSGSTGRPKGVAVSHGS------------LVNHLHATGERYELTPDDR 4737
Query: 110 VLSVLPF-FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
VL + F F ++ + + + PE + +++ T+L P L
Sbjct: 4738 VLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQ 4797
Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS--PCTL 226
LA H E S+R G ++ D + + + + + GYG TET+
Sbjct: 4798 LAEHAERDGE-PPSLRVYCFGGEAVAQASYDLAWRAL--KPVYLFNGYGPTETTVTVLLW 4854
Query: 227 YTRFAIPE-------------------------AKLGSTGQL------VMLGYLKNEEAT 255
R +G G+L V GYL+ T
Sbjct: 4855 KARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALT 4914
Query: 256 KE-----TVDSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
E + G TGD+A Y DG + R +K++G
Sbjct: 4915 AERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRG 4959
Score = 55.7 bits (134), Expect = 2e-08
Identities = 61/294 (20%), Positives = 95/294 (32%), Gaps = 69/294 (23%)
Query: 54 PKIS--PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS----- 106
P P +LA + Y+SG+TG PKG H + N + +
Sbjct: 648 PGTELNPENLAYVIYTSGSTGKPKGAGNRHRA------------LSNRLCWMQQAYGLGV 695
Query: 107 QETVLSVLPF---FHIYGFNGILNVVMMYGMHMITIPK---FTPETYIECVVKYKPTILF 160
+TVL PF ++ F L M G ++ P +E + + L
Sbjct: 696 GDTVLQKTPFSFDVSVWEFFWPL----MSGARLVVAAPGDHRDPAKLVELINREGVDTLH 751
Query: 161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
VPS+L V S+R + C ++ K+ + + YG TE
Sbjct: 752 FVPSMLQAFLQDEDV--ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY--NLYGPTE 807
Query: 221 TSPCTLY-------------------TRFAIPEAKL-----GSTGQLVMLG------YLK 250
+ + I +A L G G+L + G Y
Sbjct: 808 AAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHG 867
Query: 251 NEEATKET------VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T E V E TGD+A Y DG R +K++G ++
Sbjct: 868 RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIEL 921
Score = 55.0 bits (132), Expect = 3e-08
Identities = 63/287 (21%), Positives = 102/287 (35%), Gaps = 61/287 (21%)
Query: 53 LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS 112
+++ +LA + Y+SG+TG+PKGV +SH +V H + E +
Sbjct: 2140 AVQLAGENLAYVIYTSGSTGLPKGVAVSHG------------ALVAHCQAAGERYELSPA 2187
Query: 113 --VLPF--FHIYGFNGILNVVMMYGMHMITIPK--FTPETYIECVVKYKPTILFVVPSLL 166
L F F G + ++ G ++ + PE + + ++ TIL P L
Sbjct: 2188 DCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYL 2247
Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS---- 222
LA H ++R G + + + ++ + GYG TE
Sbjct: 2248 QQLAEHAERD-GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLF--NGYGPTEAVVTPL 2304
Query: 223 --------PCTLYT----------RFAIPEAKL-----GSTGQL------VMLGYLKNEE 253
PC R I +A L G G+L + GYL
Sbjct: 2305 LWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPG 2364
Query: 254 ATKETV-----DSEGWL--HTGDVAYYDEDGYFYIVDRTKELIKVKG 293
T E + G TGD+A Y DG + R +K++G
Sbjct: 2365 LTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRG 2411
Score = 43.4 bits (102), Expect = 2e-04
Identities = 54/275 (19%), Positives = 87/275 (31%), Gaps = 54/275 (19%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
P +LA + Y+SG+TG PKGV + H+ A++ C + VL F
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHS--ALSNHLCWMQQAY-----GLGVGDRVLQFTT-F 3246
Query: 118 HIYGFNGILNVVMMYGMHMI---TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
F L +M G ++ P +E + +L PS+L
Sbjct: 3247 SFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED 3306
Query: 175 VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE 234
S++ + CG L + + + YG TE + + +
Sbjct: 3307 --AHRCTSLKRIVCGGEALPADLQQQVFAG-----LPLYNLYGPTEATITVTHWQCVEEG 3359
Query: 235 ------------------------------AKLGSTGQLVMLGYLKNEEATKET------ 258
+L G+ + GY T E
Sbjct: 3360 KDAVPIGRPIANRACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPF 3419
Query: 259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
V E TGD+A Y DG + R +K++G
Sbjct: 3420 VPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRG 3454
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 56.7 bits (137), Expect = 7e-09
Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 49/152 (32%)
Query: 182 SIREVTCGAAPATKSLIDKFKQKVQR-----EDITIRQGYGMTETS-------------- 222
IR + G AP + QR I QGYG+TET
Sbjct: 421 RIRFMLSGGAPLSGD--------TQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVG 472
Query: 223 ------PCT------------LYTRFAIPEAKLGSTGQLVMLGYLKNEEATKET--VDSE 262
PC L + +P ++ G V LGY KN+E T E VD
Sbjct: 473 RVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDER 532
Query: 263 G--WLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
G W +TGD+ + DG I+DR K+++K++
Sbjct: 533 GMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQ 564
Score = 44.3 bits (105), Expect = 7e-05
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 48 PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
P D LP SPND+A++ Y+SG+TG+PKGV ++H N
Sbjct: 241 PVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGN 274
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 56.5 bits (137), Expect = 8e-09
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV-----HPDIVNHI 100
S LP A L Y+SG+T P GV +SH N N EQ + V
Sbjct: 152 SDARPRDLPST-----AYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV--- 203
Query: 101 PTSDTSQETVLSVLPFFHIYGFNGILNVVM 130
P DT TV+S LPF+H G +L V
Sbjct: 204 PPPDT---TVVSWLPFYHDMGL--VLGVCA 228
Score = 37.6 bits (88), Expect = 0.009
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 241 GQLVMLGYLKNEEATKET-----VD-SEG-----WLHTGDVAYYDEDGYFYIVDRTKELI 289
G V GY + E T+ T VD S G WL TGD+ + +G +IV R K+L+
Sbjct: 404 GDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLL 462
Query: 290 KVKG 293
V G
Sbjct: 463 IVDG 466
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 55.5 bits (134), Expect = 2e-08
Identities = 84/374 (22%), Positives = 138/374 (36%), Gaps = 92/374 (24%)
Query: 5 PQLLEVGTKIGATLPNFRGTIV---VGGEHDKSKNIFGFKQLVTSQPPDFQLPK-----I 56
P+LLE +I LP R V + + V D +P +
Sbjct: 84 PELLEAVEEI---LPALRAMGVRVFYLSHTSPPEGVISLLAKV-DAASDEPVPASLRSGV 139
Query: 57 SPNDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
S A+ Y+SGTTG+PK ++SH C+ L C T+ + V +
Sbjct: 140 SIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLC-----------GVTADDVVYTT 188
Query: 114 LPFFHIYGFNGILNVV--MMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
LP +H G +L +V + G ++ PKF+ + + KY T+ + LL +L +
Sbjct: 189 LPLYHSSGA--LLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYIGELLRYLCN 246
Query: 172 HPAVTPEHLASIR-EVTCGAAPATKSLIDKFKQKVQR-EDITIRQGYGMTETSPCTL-YT 228
P + +R + G P D +++ ++R I + + Y TE + + YT
Sbjct: 247 QPQSDNDRDHKVRLAIGNGLRP------DVWREFLRRFGPIHVWETYASTEGNIGFINYT 300
Query: 229 R------------------------------------FAIPEAKLGSTGQLV-------- 244
F IP G G L+
Sbjct: 301 GRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIP-VGKGEPGLLISKITSQSP 359
Query: 245 MLGYLKNEEATKET----VDSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
LGY E T++ V +G + +TGD+ D + Y DRT + + KG VA
Sbjct: 360 FLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVAT 419
Query: 299 YK--KLAGGVKFLE 310
+ + V F++
Sbjct: 420 TEVADILTMVDFIQ 433
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 54.0 bits (130), Expect = 5e-08
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 232 IPEAKLGSTGQL--------VMLGYLKNEEATKET-VDSEGWLHTGDVAYYDEDGYFYIV 282
P G G+L + GYL NEE + VD GW TGD+AY DEDGYF+ V
Sbjct: 282 TPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVD--GWYLTGDLAYRDEDGYFWFV 339
Query: 283 DRTKELIKVKGNQVAPY 299
R ++IK G+ V P+
Sbjct: 340 GRADDVIKTAGHLVGPF 356
Score = 37.4 bits (87), Expect = 0.007
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 55 KISPNDLAMLPYSSGTTGVPKGVKLSHN 82
+ P D A+L ++SGTTG PKGV H
Sbjct: 85 RTDPEDPALLHFTSGTTGKPKGVLHVHR 112
Score = 28.9 bits (65), Expect = 4.1
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 300 KKLAGGV-----KFLETIPRNPAGKVLRNELK 326
++L V F++ +P+ +GK++R LK
Sbjct: 411 QRLGAAVAPREIHFVDNLPKTRSGKIMRRLLK 442
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 52.5 bits (126), Expect = 1e-07
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 45/163 (27%)
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTL--------------- 226
+R + G AP + I++F + + QGYG+TET P TL
Sbjct: 385 LRLLISGGAPLSTE-IEEFLRVTSCAFVV--QGYGLTETLGPTTLGFPDEMCMLGTVGAP 441
Query: 227 --YTRFAIPEAK------LGST--------GQLVMLGYLKNEEATKETVDSEGWLHTGDV 270
Y + E LG G+ + GY KN E T+E + +GW HTGD+
Sbjct: 442 AVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDI 500
Query: 271 AYYDEDGYFYIVDRTKELIKV-KGNQVAPYKKLAGGVKFLETI 312
+G I+DR K LIK+ +G VA +++LE +
Sbjct: 501 GEILPNGVLKIIDRKKNLIKLSQGEYVA--------LEYLENV 535
Score = 39.0 bits (91), Expect = 0.003
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI-VN 98
F + P + PK P D+ + Y+SGT+G PKGV L+H A + D+ +
Sbjct: 203 FLHMGKENPSETNPPK--PLDICTIMYTSGTSGDPKGVVLTHEAVATFV---RGVDLFME 257
Query: 99 HIPTSDTSQETVLSVLPFFHI 119
T + LS LP HI
Sbjct: 258 QFEDKMTHDDVYLSFLPLAHI 278
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 52.1 bits (125), Expect = 3e-07
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 35/126 (27%)
Query: 50 DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC--------VHPDIVNHIP 101
+Q P + P+D+A L Y+SG+T +PKGV++SH N N EQ ++PD
Sbjct: 157 AWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVAN-EQLIRHGFGIDLNPD------ 209
Query: 102 TSDTSQETVLSVLPFFHIYG---------FNGILNVVMMYGMHMITIPKFTPETYIECVV 152
+ ++S LP +H G F+G+ V+M + + P ++E +
Sbjct: 210 ------DVIVSWLPLYHDMGLIGGLLQPIFSGV-PCVLMSPAYFLE----RPLRWLEAIS 258
Query: 153 KYKPTI 158
+Y TI
Sbjct: 259 EYGGTI 264
Score = 44.0 bits (104), Expect = 1e-04
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 239 STGQLVMLGYLKNEEATKETV---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
++G + GY +N EA+ +T D WL TGD+ + DG ++ R K+++ V+G+
Sbjct: 402 ASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGELFVTGRLKDMLIVRGHN 460
Query: 296 VAP 298
+ P
Sbjct: 461 LYP 463
Score = 41.3 bits (97), Expect = 7e-04
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 49 PDFQLPKIS-PNDLAMLPYSSGTTGVPKGVKLSHNNCA 85
D LP +S P A L Y+SG+TG PKGV +SH A
Sbjct: 2322 SDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIA 2359
Score = 34.8 bits (80), Expect = 0.074
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH 81
SQ P L ++LA + Y+SG+TG PKGV +H
Sbjct: 1263 SQAPGLHL---HGDNLAYVIYTSGSTGQPKGVGNTH 1295
Score = 34.8 bits (80), Expect = 0.082
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 58 PNDLAMLPYSSGTTGVPKGV 77
P++LA + Y+SG+TG+PKGV
Sbjct: 3868 PDNLAYVIYTSGSTGLPKGV 3887
Score = 30.1 bits (68), Expect = 2.1
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 144 PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ 203
P+ E V +Y T L VP LL P S+R + G L ++ Q
Sbjct: 1353 PQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAAACT--SLRRLFSGGEALPAELRNRVLQ 1410
Query: 204 KVQREDITIRQGYGMTETS 222
+ + + YG TET+
Sbjct: 1411 --RLPQVQLHNRYGPTETA 1427
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 51.5 bits (124), Expect = 3e-07
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 36/210 (17%)
Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLA 170
VLP +H+ G + + G +I +P ++ E L +VP+ L L
Sbjct: 164 FCVLPLYHVSGLMQFMRSFLTGGKLVI-LPYKRLKSGQELPPNPSDFFLSLVPTQLQRLL 222
Query: 171 SHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--CTLY- 227
+ P+ LA R + G APA SL+ ++ ++ + + YGMTET+ TL
Sbjct: 223 Q---LRPQWLAQFRTILLGGAPAWPSLL----EQARQLQLRLAPTYGMTETASQIATLKP 275
Query: 228 TRF---------AIPEAKL----GSTGQLVM------LGYLKNEEATKETVDSEGWLHTG 268
F +P A++ TG + + LGY +DS+G T
Sbjct: 276 DDFLAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQ------ILDSQGIFETD 329
Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
D+ Y D GY +I+ R + I G V P
Sbjct: 330 DLGYLDAQGYLHILGRNSQKIITGGENVYP 359
Score = 28.0 bits (63), Expect = 8.1
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 12/49 (24%)
Query: 282 VDRTKELIKVKGNQVAPYKK----LAGGVKFLETIPRNPAGKVLRNELK 326
++ K IK +Q++P+K+ + + +PRNP GK+ R +L+
Sbjct: 402 LEELKTAIK---DQLSPFKQPKHWIP-----VPQLPRNPQGKINRQQLQ 442
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 51.3 bits (122), Expect = 4e-07
Identities = 62/303 (20%), Positives = 110/303 (36%), Gaps = 44/303 (14%)
Query: 40 FKQLVTSQPPDFQ-LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN 98
+ ++ + Y++GTTG+PKGV SH ++ +V+
Sbjct: 133 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA---SLVD 189
Query: 99 HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTI 158
S ++ VL V+P FH+ + ++ ++ P+ P + +E T
Sbjct: 190 GTALS--EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTF 247
Query: 159 LFVVPSLLLFLA-SHPAVTPEHLASIREVTCGAAPATKSL----IDKFKQKV-------- 205
VP++ L LA + R V G+A + + +
Sbjct: 248 TAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETS 307
Query: 206 ----------------QREDITIRQGYGMT---ETSPCTLYTRFAIPEAK-----LGSTG 241
+ E +T++ G+ +P+ + G
Sbjct: 308 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKG 367
Query: 242 QLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKK 301
+ GY NEEAT+ + +G+ TGD+A +DE+GY I DR K+LIK G +
Sbjct: 368 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVD 426
Query: 302 LAG 304
L
Sbjct: 427 LEN 429
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 50.2 bits (120), Expect = 7e-07
Identities = 59/254 (23%), Positives = 85/254 (33%), Gaps = 61/254 (24%)
Query: 14 IGATLPNFRGTIVVG-----------------GEHDKSKNIFGFKQLVT-----SQPPDF 51
+GA L + + V GE K K VT +P
Sbjct: 77 VGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFKGWPRLVWFVTEIKTLKKPIKD 136
Query: 52 QLPKISP--NDLAMLPYSSGTTGVPKGVKLSH----NNCAVNLEQCVHPDIVNHIPTSDT 105
P + P D A + Y + G GV ++H +C + C + T
Sbjct: 137 WNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQY-----------T 185
Query: 106 SQETVLSVLPFFHIYGF-NGILNVVMMYGMHMITIP----KFTPETYIECVVKYKPTILF 160
T+++VL F GF +G L VM GMH I IP K P + + + KYK
Sbjct: 186 EGRTIVNVLDFKKGVGFWHGCLTSVMN-GMHTILIPPALMKNNPLLWFQIISKYKIKDTL 244
Query: 161 VVPSLL--LFLASHPAVTPEHLASIRE--VTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
V L A +L+ +R V GA P + + F Q + +
Sbjct: 245 VKSRDLHWALNAHRDQKDI-NLSCLRMLIVADGARPWSLASCQAFLNVFQSKGL------ 297
Query: 217 GMTETSPCTLYTRF 230
SPC T
Sbjct: 298 -----SPCASSTEA 306
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 49.9 bits (120), Expect = 8e-07
Identities = 63/282 (22%), Positives = 105/282 (37%), Gaps = 63/282 (22%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVH--PDIVNHIPTSDTSQETVLSVLP 115
P+DLA + Y+SG+TG PKGV++SH VN + P + + + +L+V
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRA-LVNFLLSMARRPGL--------GASDRLLAVTT 142
Query: 116 F-FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTILFVVPSLL-LFLA 170
F I L + ++ G ++ T PE + + TI+ P+ + LA
Sbjct: 143 ISFDISVLE--LLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLA 200
Query: 171 SHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET--------- 221
+ S+ CG + L ++ + YG TET
Sbjct: 201 AG----WRGRESLT-ALCGGEALPRDLAERLLSTGAE----LWNMYGPTETTIWSTCARV 251
Query: 222 ----SPCTL-----YTRFAIPEAKL-----GSTGQL------VMLGYLKNEEATKE---- 257
P T+ T+ + + L G G+L V GYL E T E
Sbjct: 252 TAADGPVTIGRPIANTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVP 311
Query: 258 ---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
TGD+ + DG + R + +K++G ++
Sbjct: 312 DPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRI 353
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 49.9 bits (120), Expect = 9e-07
Identities = 59/282 (20%), Positives = 102/282 (36%), Gaps = 68/282 (24%)
Query: 55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
++ D A Y+SGTTG+PK +SH + T + + L
Sbjct: 195 GVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGG-------LLRLTPDDVLYCCL 247
Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
P +H G + V+ G + KF+ + + V +Y+ T + L +L + P
Sbjct: 248 PLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPP 307
Query: 175 VTPEHLASIREVTCGAA--PATKSLIDKFKQK--VQREDITIRQGYGMTET--------- 221
+ +R + G P + D+F+Q+ + R I + Y +E
Sbjct: 308 KPTDRDHRLR-LMIGNGLRP---DIWDEFQQRFGIPR----ILEFYAASEGNVGFINVFN 359
Query: 222 -------SPCTLYTRFAI---------P---------EAKLGSTGQLV-ML-------GY 248
P L +AI P + K G G L+ + GY
Sbjct: 360 FDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY 419
Query: 249 LKNEEATKETV------DSEGWLHTGDVAYYDEDGYFYIVDR 284
+ EA+++ + + W +TGD+ D G+ VDR
Sbjct: 420 T-DPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDR 460
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 48.9 bits (117), Expect = 1e-06
Identities = 61/254 (24%), Positives = 96/254 (37%), Gaps = 36/254 (14%)
Query: 60 DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV------LSV 113
D+A++ +SGTTG PKG L+ A L ++D + + + L
Sbjct: 36 DVALVVATSGTTGTPKGAMLT----AAAL-----------TASADATHDRLGGPGQWLLA 80
Query: 114 LPFFHIYGFNGIL-NVVMMYGMHMITIPK-FTPETYIECVVKYKPTILFV--VPSLLLFL 169
LP HI G ++ +V+ + + F P V + + VP L
Sbjct: 81 LPAHHIAGLQVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKA 140
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR 229
PA T LA + V G PA ++D I + + YGM+ETS +Y
Sbjct: 141 LDDPAAT-AALAELDAVLVGGGPAPAPVLDAAAAA----GINVVRTYGMSETSGGCVYDG 195
Query: 230 FAIPEAKLGSTGQLVMLGYLKNEEATKETVD-----SEGWLHTGDVAYYDEDGYFYIVDR 284
+ ++ + LG + + VD GW T D+ D DG ++ R
Sbjct: 196 VPLDGVRVRVEDGRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGALD-DGVLTVLGR 254
Query: 285 TKELIKVKGNQVAP 298
+ I G V P
Sbjct: 255 ADDAISTGGLTVLP 268
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 47.7 bits (114), Expect = 6e-06
Identities = 72/321 (22%), Positives = 111/321 (34%), Gaps = 97/321 (30%)
Query: 43 LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN---- 98
L QL + P+ A + ++SG+TG PKGV + IVN
Sbjct: 584 LAPQGAAPLQLSQ--PHHTAYIIFTSGSTGRPKGVMVGQTA------------IVNRLLW 629
Query: 99 ---HIPTSDTSQETVL---------SVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPE- 145
H P T+ + VL SV FF + G ++ PE
Sbjct: 630 MQNHYPL--TADDVVLQKTPCSFDVSVWEFF----------WPFIAGAKLVMAE---PEA 674
Query: 146 ----TYIECVV-KYKPTILFVVPSLL-LFLAS-HPAVTPEHLASIREVTCGAAPATKSLI 198
++ +Y T VPS+L F+AS P + AS+R+V C L
Sbjct: 675 HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLC 734
Query: 199 DKFKQKVQREDITIRQGYGMTE---------TSPCTLY---------------TRFAIPE 234
+++Q + YG TE L T I +
Sbjct: 735 REWQQLTGAP---LHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD 791
Query: 235 AKL-----GSTGQL----VML--GYLKNEEATKET------VDSEGWLHTGDVAYYDEDG 277
A++ G G L + L GYL + T E TGDVA + +DG
Sbjct: 792 ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDG 851
Query: 278 YFYIVDRTKELIKVKGNQVAP 298
+ R+ + +K++G ++
Sbjct: 852 AVEYLGRSDDQLKIRGQRIEL 872
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 47.0 bits (112), Expect = 8e-06
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 51 FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
+ P+ + + +A L Y+SG+T +P GV+++H N N+ Q +++ + + +
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQ-----VIDALEGQEGDRG-- 224
Query: 111 LSVLPFFHIYGFNGILNVVMMYGM--HMITIPKFTPETYI 148
+S LPFFH G L V++ + H IT +P ++
Sbjct: 225 VSWLPFFHDMG----LITVLLPALLGHYITF--MSPAAFV 258
Score = 33.2 bits (76), Expect = 0.18
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 241 GQLVMLGYLKNEEATKETVD-----------SEG------WLHTGDVAYYDEDGYFYIVD 283
G + GY E T T +EG W+ TGD Y DG YI
Sbjct: 425 GNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY-FDGELYITG 483
Query: 284 RTKELIKVKG 293
R K+L+ + G
Sbjct: 484 RVKDLVIIDG 493
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 46.7 bits (111), Expect = 9e-06
Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 66 YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGI 125
++SG+TG PK + + + C D H+ +++VL H G
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSF-DCNVHDF--HM----KREDSVLIAGTLVHSLFLYGA 202
Query: 126 LNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
++ + + G + + KF P ++ + ++++ VP++L L V E+ I
Sbjct: 203 ISTLYV-GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRV-IENKMKI-- 258
Query: 186 VTCGA---APATKSLIDKFKQKVQREDITIRQGYGMTETS-------------------P 223
++ GA A A + + + F + + YG +E S P
Sbjct: 259 ISSGAKWEAEAKEKIKNIFPY-AKLYEF-----YGASELSFVTALVDEESERRPNSVGRP 312
Query: 224 CTLYT----RFAIPEAKLGSTGQLVM------LGYLKNEEATKETVDSEGWLHTGDVAYY 273
A E + G G + + +GY ++++GW+ DV Y
Sbjct: 313 FHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGY-IIGGVLARELNADGWMTVRDVGYE 371
Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
DE+G+ YIV R K +I G + P
Sbjct: 372 DEEGFIYIVGREKNMILFGGINIFP 396
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 46.9 bits (112), Expect = 1e-05
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 245 MLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
+L ++E K+ G+ TGD Y DEDGY +++ RT ++I V G
Sbjct: 441 LLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAG 491
Score = 30.0 bits (68), Expect = 2.0
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 66 YSSGTTGVPKGV 77
Y+SGTTG PKGV
Sbjct: 227 YTSGTTGKPKGV 238
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 46.1 bits (109), Expect = 1e-05
Identities = 70/278 (25%), Positives = 102/278 (36%), Gaps = 49/278 (17%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGV-KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS 112
P ++ +L +SGTTG PKGV + AV V I++ S+ +V
Sbjct: 170 PAVAAPGRIVL-LTSGTTGKPKGVPRAPQLRSAVG----VWVTILDRTRLRTGSRISV-- 222
Query: 113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH 172
+P FH G G+L + + G ++T F E + ++ VP +L +
Sbjct: 223 AMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILEL 281
Query: 173 P----AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS------ 222
P A P L +R V +L +F DI + GYG TE
Sbjct: 282 PPRVRARNP--LPQLRVVMSSGDRLDPTLGQRFMDTYG--DI-LYNGYGSTEVGIGALAT 336
Query: 223 ------------------PCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEAT----KETVD 260
P + R P TG++ + G L T K VD
Sbjct: 337 PADLRDAPETVGKPVAGCPVRILDRNNRPVGPR-VTGRIFVGGELAGTRYTDGGGKAVVD 395
Query: 261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
G TGD+ Y D G +IV R ++I G V P
Sbjct: 396 --GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYP 431
Score = 33.0 bits (75), Expect = 0.19
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 306 VKFLETIPRNPAGKVLRNEL 325
+ + +IPRNP GKVLR EL
Sbjct: 495 INIVSSIPRNPTGKVLRKEL 514
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 46.1 bits (110), Expect = 2e-05
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
W+H GD A DEDGY+YI+ R+ + IKV G +V P
Sbjct: 337 WVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGP 370
Score = 38.8 bits (91), Expect = 0.004
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSH 81
+D AM+ Y+SGTTG PKG +H
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTH 122
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 44.6 bits (106), Expect = 4e-05
Identities = 66/282 (23%), Positives = 96/282 (34%), Gaps = 70/282 (24%)
Query: 58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV---- 113
P+DLA + Y+SG+TG PKGV + H N A L Q + + VL+
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRN-AAALLQWAA----AVFSAEELAG--VLAATSIC 156
Query: 114 --LPFFHIYGFNGILNVVMMYG--MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL 169
L F I+ V + G + + P+ + V T++ VPS L
Sbjct: 157 FDLSVFEIF-------VPLSTGGRVVLADNALALPDLPAKAEV----TLINTVPSAAREL 205
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET---SPCTL 226
H A+ S+R V P + L+ + Q E + YG +E S
Sbjct: 206 LRHDALPS----SVRTVNLAGEPLPQELVQRLYALPQVE--RVYNLYGPSEDTTYSTYAE 259
Query: 227 YTRFAIPEAKLGS---------------------TGQL------VMLGYLKNEEATKE-- 257
A +G G+L V GYL E T E
Sbjct: 260 VEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERF 319
Query: 258 ------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
E TGD+ DG + R + +KV+G
Sbjct: 320 LPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRG 361
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 43.8 bits (103), Expect = 8e-05
Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 35/268 (13%)
Query: 62 AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-TSQETVLSVLPFFHIY 120
A++ YSSGTTG PKG++ V + P + D + + S P +H
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDV--DAPGDPIVAIARAFYDISESDIYYSSAPIYHAA 208
Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPE 178
++V G ++ +F + + V +Y+ T+ +VP++ + L A T
Sbjct: 209 PLRWC-SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRY 267
Query: 179 HLASIREVTCGAAP----ATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTLYTRFAIP 233
++S+R V AAP ++ID V E + + +GMT SP L ++
Sbjct: 268 DVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVY-EYYSSTEAHGMTFIDSPDWLAHPGSVG 326
Query: 234 EAKLGS------------TGQL---------VMLGYLKNEEATKETVDSEG--WLHTGDV 270
+ LG G++ + YL + E T W GD+
Sbjct: 327 RSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDL 386
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
DEDGY Y+ DR +I G + P
Sbjct: 387 GSVDEDGYLYLADRKSFMIISGGVNIYP 414
Score = 30.0 bits (67), Expect = 1.8
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 286 KELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
+ELI +++A YK V+F++ +PR P GK+++ L+
Sbjct: 462 RELIDYTRSRIAHYKA-PRSVEFVDELPRTPTGKLVKGLLR 501
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 42 QLVTSQ-PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
Q TS P F + +D + Y+SG+TG PKGV++SH+N
Sbjct: 124 QAETSGGPVSFDHA-VKGDDNYYIIYTSGSTGNPKGVQISHDN 165
Score = 33.2 bits (76), Expect = 0.17
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 241 GQLVMLGYLKNEEATKE---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
G V GYL N E T E + + + TGD DG + R IK+ G
Sbjct: 349 GPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHG 403
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 42.8 bits (101), Expect = 2e-04
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 35/126 (27%)
Query: 200 KFKQKVQRE-----DITIRQGYGMTET---------------------SPCTLY------ 227
K K+ E ++ QGYG+TET SP T Y
Sbjct: 472 KLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWE 531
Query: 228 ---TRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDR 284
+P+ +L + GY +E TK +G+ TGD+ +++G +DR
Sbjct: 532 TYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDR 591
Query: 285 TKELIK 290
+K L+K
Sbjct: 592 SKGLVK 597
Score = 42.0 bits (99), Expect = 3e-04
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 31 HDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90
+I F + ++ ++++ P+ + + Y+SGT+G PKGV LS+ NL
Sbjct: 276 KKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNK----NLYN 331
Query: 91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
V P + H + +T LS LP HIY
Sbjct: 332 TVVP-LCKHSIFKKYNPKTHLSYLPISHIY 360
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 41.5 bits (98), Expect = 5e-04
Identities = 68/301 (22%), Positives = 116/301 (38%), Gaps = 59/301 (19%)
Query: 38 FGFKQLVTSQPPDFQLPKISPND-LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI 96
+ DF SP D +A S G+TG PK + +HN+ ++ + V +I
Sbjct: 161 HSLDDAINHPAEDF-TATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV--EI 217
Query: 97 VNHIPTSDTSQETVLSVLPFFHIYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKY 154
T Q L LP H Y + G L V + G ++ P + + K+
Sbjct: 218 CGF-----TPQTRYLCALPAAHNYPMSSPGALGVFLAGGT-VVLAPDPSATLCFPLIEKH 271
Query: 155 KPTILFVVPS-LLLFL-ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ----KVQRE 208
+ + +VP + L+L A + LAS++ + G A +++L + ++Q
Sbjct: 272 QVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQ-- 329
Query: 209 DITIRQGYGMTETSPCTLYTRFAIPEAKL--------------------------GSTGQ 242
Q +GM E YTR + ++ G G+
Sbjct: 330 -----QVFGMAEGLVN--YTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGR 382
Query: 243 LV------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
L+ GY K+ + D+ G+ +GD+ D DGY +V R K+ I G ++
Sbjct: 383 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKI 442
Query: 297 A 297
A
Sbjct: 443 A 443
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 41.3 bits (97), Expect = 5e-04
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 240 TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
G +M GYL + +D + W TGD+ Y + G + R KELI V G + P
Sbjct: 378 RGASMMSGYLG-----QAPIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFP 430
Score = 29.0 bits (65), Expect = 3.7
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 53 LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS 112
L A+L ++G+TG P+ LS NL + + D + + S
Sbjct: 146 LTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLR-----GLNARVGL-DAATDVGCS 199
Query: 113 VLPFFHIYGFNGILNVVMMYGMHMITIP 140
LP +H G +L + G + P
Sbjct: 200 WLPLYHDMGLAFLLT-AALAGAPLWLAP 226
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 40.9 bits (96), Expect = 7e-04
Identities = 74/326 (22%), Positives = 118/326 (36%), Gaps = 87/326 (26%)
Query: 37 IFGFKQLVTSQPPDFQLPKISP---NDLAMLPYSSGTTGVPKGVKLSHNN-----CAVNL 88
IF + +Q + P D Y+SGTTG+PK + H+
Sbjct: 80 IFNLLDPLLTQSST-EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYY 138
Query: 89 EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV--VMMYGMHMITIPKFTPET 146
+ P+ V + LP +H G GI+ V +++G ++ KF+
Sbjct: 139 AFGMRPEDVVYDC------------LPLYHSAG--GIMGVGQALLHGSTVVIRKKFSASN 184
Query: 147 YIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR-EVTCGAAPATKSLIDKFKQKV 205
+ + VKY TI+ + + +L + P E ++R V G P ++Q V
Sbjct: 185 FWDDCVKYNCTIVQYIGEICRYLLAQPPSEEEQKHNVRLAVGNGLRPQI------WEQFV 238
Query: 206 QREDIT-IRQGYGMTE-------------------TSPCTLY----------TRFAIPEA 235
+R I I + YG TE ++Y T I ++
Sbjct: 239 RRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGELIRDS 298
Query: 236 K-------LGSTGQLV-----------MLGYLKNEEATKETVDSEGWLH------TGDVA 271
G G LV GY+ NE AT + + + + +GDV
Sbjct: 299 DGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYV-NEGATNKKIARDVFKKGDSAFLSGDVL 357
Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVA 297
DE GY Y DRT + + KG V+
Sbjct: 358 VMDELGYLYFKDRTGDTFRWKGENVS 383
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 40.6 bits (96), Expect = 9e-04
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 48 PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
P DF + +D + ++SGTTG PKGV++SH+N
Sbjct: 133 PYDFDHA-VKGDDNYYIIFTSGTTGKPKGVQISHDN 167
Score = 38.7 bits (91), Expect = 0.003
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 240 TGQLVMLGYLKNEEATKE---TVDSEGWLHTGDVAYYDEDGYFY 280
+G V GYL N E T E T D + HTGD Y ++ FY
Sbjct: 350 SGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFY 393
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 40.5 bits (95), Expect = 0.001
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 50 DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
F ++ +D++ L Y+SG+T P GV+++H NL Q ++ I D +
Sbjct: 184 SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQ-----MILSIDLLDRNTHG 238
Query: 110 VLSVLPFFHIYGFNGILNVVM---MYGMHM 136
V S LP +H G L+++ +YG H
Sbjct: 239 V-SWLPLYHDMG----LSMIGFPAVYGGHS 263
Score = 33.2 bits (76), Expect = 0.19
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
D WL TGD+ Y DG YI R +LI + G
Sbjct: 473 DDGTWLRTGDLGVY-LDGELYITGRIADLIVIDG 505
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 40.2 bits (95), Expect = 0.001
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
G+ TGD A DEDGY++I+ R ++I V G
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSG 493
Score = 32.1 bits (74), Expect = 0.39
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 43 LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGV 77
L+ P + + D + Y+SG+TG PKGV
Sbjct: 209 LMAKASPYCEPEPMDAEDPLFILYTSGSTGKPKGV 243
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 39.6 bits (93), Expect = 0.002
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 22/240 (9%)
Query: 63 MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ-ETVLSVLPFFHIYG 121
+L YSSGTTG PK ++ S + +I + + Q ET + P H YG
Sbjct: 105 LLQYSSGTTGEPKLIRRSWTE--------IDREIEAYNEALNCEQDETPIVACPVTHSYG 156
Query: 122 F-NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
G+L + G + I P+ + + IL+ VP +L L P
Sbjct: 157 LICGVL-AALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLL---PGTF 212
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGST 240
+T G P ++ K +++ + Q YG +E ++ LG+
Sbjct: 213 QFHAVMTSGT-PLPEAWFYKLRERTTY----MMQQYGCSEAGCVSICPDMKSHLD-LGNP 266
Query: 241 GQLVMLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
V + +E A +E V + + T D+ Y E G + + R ++I V G V P
Sbjct: 267 LPHVSVSAGSDENAPEEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYP 326
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 39.5 bits (93), Expect = 0.002
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
G+ TGD A D+DGY +I R ++I V G
Sbjct: 474 PGYYFTGDGARRDKDGYIWITGRVDDVINVSG 505
Score = 33.8 bits (78), Expect = 0.13
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGV 77
+ L+ + + D + Y+SG+TG PKGV
Sbjct: 217 WHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGV 254
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 39.2 bits (92), Expect = 0.002
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 27/165 (16%)
Query: 67 SSGTTGVPKGVKLSHN---NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
SSGTTG P + A L + ++ V + V + YG
Sbjct: 98 SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGV-------RKGDKVQ----NAYGYGLF 146
Query: 124 GILNVVMMYGMH---MITIPKFTPET--YIECVVKYKPTILFVVPSLLLFLA---SHPAV 175
+ + YG IP T +E + +KPT++ PS LL+LA +
Sbjct: 147 TG-GLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI 205
Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
P+ L S+++ GA P ++ + K R YG+TE
Sbjct: 206 DPDKL-SLKKGIFGAEPWSEEM---RKVIENRFGCKAFDIYGLTE 246
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 37.8 bits (89), Expect = 0.007
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
TGD A DEDGY++I R +++ V G
Sbjct: 487 TGDGARRDEDGYYWITGRVDDVLNVSG 513
Score = 29.7 bits (68), Expect = 2.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 66 YSSGTTGVPKGV 77
Y+SG+TG PKGV
Sbjct: 252 YTSGSTGKPKGV 263
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 34.9 bits (81), Expect = 0.053
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
T D D DGY++I+ RT ++I V G
Sbjct: 477 TFDWGIRDADGYYFILGRTDDVINVAG 503
Score = 30.7 bits (70), Expect = 1.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 66 YSSGTTGVPKGV 77
Y+SGTTG PKGV
Sbjct: 240 YTSGTTGKPKGV 251
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 33.2 bits (77), Expect = 0.19
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 66 YSSGTTGVPKGVKLSH 81
YSSGTTG+PK + H
Sbjct: 270 YSSGTTGLPKCIVHGH 285
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 33.0 bits (76), Expect = 0.24
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 14 IGATLPNFRGTIVVGGEHDKS-------KNIFGFKQLVTSQPPDFQLPKISPNDLAMLPY 66
I LP+ +VV + + L + + ++ + + Y
Sbjct: 184 IVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILY 243
Query: 67 SSGTTGVPKGVKLSH 81
SSGTTG+PK +
Sbjct: 244 SSGTTGLPKCIVHGA 258
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 33.0 bits (75), Expect = 0.24
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 209 DITIRQGYGMTETSPCTLYTRFAIPE-AKLGSTGQLVMLGYLKNEEATKETVDSEGWLHT 267
DI I YG T C + IPE A+L ++L L E K+TVD
Sbjct: 435 DINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIECIKKTVD------- 487
Query: 268 GDVAYYDEDGYFYIVDRTKELIKV 291
Y D Y I ++ K L+K+
Sbjct: 488 ----YLSNDRYLLIGNKNKSLLKI 507
>gnl|CDD|225891 COG3355, COG3355, Predicted transcriptional regulator
[Transcription].
Length = 126
Score = 31.1 bits (71), Expect = 0.26
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 130 MMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCG 189
M + + +F E ++CV + V L + +T + LA I +
Sbjct: 1 MPTSIIEPSRKEFRCEDVLKCVYGLSELDVEV---YKALLEENGPLTVDELAEILNRSRS 57
Query: 190 AA-PATKSLIDKFKQKVQREDITIRQG 215
+ ++L++ V+RE + ++ G
Sbjct: 58 TVYRSLQNLLE--AGLVEREKVNLKGG 82
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 32.3 bits (73), Expect = 0.42
Identities = 64/288 (22%), Positives = 99/288 (34%), Gaps = 44/288 (15%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
+ P ++ + + LA Y+SGTTG PK H + D +
Sbjct: 128 MSEAARVAPGGYEP--MGGDALAYATYTSGTTGPPKAA--IHRHADP----LTFVDAMCR 179
Query: 100 IPTSDTSQETVLSVLPFFHIYGF-NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTI 158
T ++T L + YG N + + G +I TPE ++ P++
Sbjct: 180 KALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSV 239
Query: 159 LFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM 218
L+ VP+ F + +P+ S+R V L ++ + I I G G
Sbjct: 240 LYGVPN--FFARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFG--GIPILDGIGS 295
Query: 219 TETS------------PCTL-------YTRFAIPE---AKLGSTGQLVMLG------YLK 250
TE TL R P+ A G G L + G Y
Sbjct: 296 TEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWN 355
Query: 251 NEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
++ V +EGWL T D D DG+ R + + G V P
Sbjct: 356 RPDS---PVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDP 400
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 31.8 bits (72), Expect = 0.53
Identities = 61/284 (21%), Positives = 94/284 (33%), Gaps = 56/284 (19%)
Query: 59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
N+ + + Y+SGTTG PKGV+ AV L + + I H
Sbjct: 232 NEPSYILYTSGTTGKPKGVQRDVGGYAVALALSM--WAIFGIRAGQVMFSASDVGWVVGH 289
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VT 176
Y L ++ P + V +Y +F P+ + L A +
Sbjct: 290 SYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLR 349
Query: 177 PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA- 235
L+S+ + P + + + Y TET + AI
Sbjct: 350 KHDLSSLHWLFLAGEPLDEPTAHWITDGL---GKPVIDNYWQTETG----WPVLAIMPGL 402
Query: 236 -----KLGSTGQLVMLGYLKN--EEATKETV--DSEG----------------------- 263
KLGS G L M GY +EAT + +G
Sbjct: 403 DLKPVKLGSPG-LPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARF 461
Query: 264 ----WLH-------TGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
W H + D DEDGY +I+ RT ++I V G+++
Sbjct: 462 LKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRL 505
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 31.6 bits (72), Expect = 0.62
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 8 LEVGTKIGATLPNFRGTIVVGGEHDKSKN-IFGFKQLVTSQPPDFQLPKISPNDLAMLPY 66
LE+ T+I A G+ +VGG + + + Q + P + P+ L +
Sbjct: 367 LELRTEIPALALQDDGS-LVGGSLEGGETDVLAPYQALKDTPTGVVV---GPDSNPTLSF 422
Query: 67 SSGTTGVPKGVKLSH 81
+SG+ G+PKGV H
Sbjct: 423 TSGSEGIPKGVLGRH 437
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 30.6 bits (70), Expect = 1.1
Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 38/135 (28%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLP-KISPNDLAM 63
PQL + + LP+ + E + + F + Q + P LA
Sbjct: 85 PQLPQ--PLLEELLPSLTLDFALVLEGENT---FSALTSLHLQLVEGAHAVAWQPQRLAT 139
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV---------- 113
+ +SG+TG+PK VH H+ S E VLS+
Sbjct: 140 MTLTSGSTGLPKAA--------------VH-TAQAHL----ASAEGVLSLMPFTAQDSWL 180
Query: 114 --LPFFHIYGFNGIL 126
LP FH+ G GI+
Sbjct: 181 LSLPLFHVSG-QGIV 194
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 30.6 bits (69), Expect = 1.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
G+ +GD D+DGY+++ R ++I V G+++
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRI 546
Score = 29.5 bits (66), Expect = 2.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGV 77
++ +V + P ++ + D L Y+SG+TG PKGV
Sbjct: 256 WQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 293
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009). This is
a small domain that is found C terminal to pfam00501. It
has a central beta sheet core that is flanked by alpha
helices.
Length = 43
Score = 27.0 bits (61), Expect = 1.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 306 VKFLETIPRNPAGKVLRNELK 326
V+F++ +P+ +GK+LR L+
Sbjct: 7 VEFVDELPKTRSGKILRRLLR 27
>gnl|CDD|234657 PRK00135, scpB, segregation and condensation protein B; Reviewed.
Length = 188
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRED--ITIRQ 214
LLF++ ++ E LA I E+ + L+++ ++K + +D + + +
Sbjct: 12 LLFVSGEEGLSLEQLAEILELEPTEV---QQLLEELQEKYEGDDRGLKLIE 59
>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 2. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
asimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 29.9 bits (68), Expect = 1.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 260 DSEGWLHTGDVAYYDEDGYFYI-VDRTKELIKVKGNQVAPYKKLAGGVKFLE 310
DS+G++ YD DG+ + KE+ +V+ +V+ Y K G K+ E
Sbjct: 69 DSKGYV-------YDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113
>gnl|CDD|214850 smart00842, FtsA, Cell division protein FtsA. FtsA is essential
for bacterial cell division, and co-localizes to the
septal ring with FtsZ. It has been suggested that the
interaction of FtsA-FtsZ has arisen through coevolution
in different bacterial strains.
Length = 187
Score = 29.4 bits (67), Expect = 2.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 110 VLSVLP-FFHIYGFNGILNVVMMYG------MHMITIPKFTPETYIECV 151
+L VLP + + G GI + + M G +H++T PK + +CV
Sbjct: 118 ILHVLPQEYILDGQEGIKDPIGMSGVRLEVDVHVVTAPKSAIQNLEKCV 166
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 27.9 bits (62), Expect = 8.2
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 145 ETYIECVVKYKPTILFVVPSLLLFLASH-------PAVTPEHLASIREVTCGAAPATKSL 197
E ++ + +KP I+ V PS L LA PA + S++ GA P T++
Sbjct: 160 EKQVQLIRDFKPDIIHVTPSYALNLAEEFERQGIDPAES-----SLKIGVFGAEPWTQAQ 214
Query: 198 IDKFKQKVQREDITIRQGYGMTE 220
+ ++++ I YG++E
Sbjct: 215 RREIERRL---GIDALDIYGLSE 234
>gnl|CDD|226992 COG4645, COG4645, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 410
Score = 27.9 bits (62), Expect = 8.4
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 101 PTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
P S E +++++ H G+N IL MY ++M+ P +++ + ++
Sbjct: 135 PLSKDPPEGLVAIVTLGHQLGYNNILP---MYAVYMLLAPVLL------KLLRGRLALVL 185
Query: 161 VVPSLLLFLAS 171
S L++LAS
Sbjct: 186 AG-SGLVWLAS 195
>gnl|CDD|152000 pfam11564, BpuJI_N, Restriction endonuclease BpuJI - N terminal.
BpuJI is a restriction endonuclease which recognises the
asymmetric sequence 5'-CCCGT and cuts at multiple sites
in the surrounding area of the target sequence. This
family of proteins is the N terminal domain of BpuJI
which has DNA recognition functions. The recognition
domain has two subdomains D1 and D2. The recognition of
the target sequence occurs through major groove contacts
of amino acids on the helix-turn-helix region and the
N-terminal arm.
Length = 294
Score = 27.7 bits (61), Expect = 9.8
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 248 YLKNEEATKETVDSEGWLHTGDVA------YYDEDGYFYIVDRTKELIK 290
+ T++T+D+ H ++A + ++D + + R KELI+
Sbjct: 56 IAGEADKTEKTIDN----HRTEIAGKLFGMFIEDDEFIFPGGRAKELIE 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,115,745
Number of extensions: 1624289
Number of successful extensions: 2087
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1802
Number of HSP's successfully gapped: 342
Length of query: 334
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 237
Effective length of database: 6,635,264
Effective search space: 1572557568
Effective search space used: 1572557568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)