RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12107
(334 letters)
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 352 bits (905), Expect = e-119
Identities = 110/329 (33%), Positives = 153/329 (46%), Gaps = 44/329 (13%)
Query: 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAM 63
E A + + + V D + F +L + + ISP+D+
Sbjct: 128 QACYYEKVKDF-ARESDVK-VMCVDSAPDGCLH---FSELTQADENEAPQVDISPDDVVA 182
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
LPYSSGTTG+PKGV L+H ++ Q V D N S+ + +L VLP FHIY N
Sbjct: 183 LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSE---DVILCVLPMFHIYALN 239
Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
I+ + G ++ +PKF + + + KYK +I VVP +++ +A P + L+S+
Sbjct: 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSL 299
Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE---AKLGST 240
R + G AP K L D + K + QGYGMTE P E K G+
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357
Query: 241 GQL-------------------------------VMLGYLKNEEATKETVDSEGWLHTGD 269
G + +M GYL + EAT T+D EGWLHTGD
Sbjct: 358 GTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ Y D+D +IVDR KELIK KG QVAP
Sbjct: 418 IGYIDDDDELFIVDRLKELIKYKGFQVAP 446
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 355 bits (913), Expect = e-115
Identities = 108/332 (32%), Positives = 149/332 (44%), Gaps = 42/332 (12%)
Query: 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLV---TSQPPDFQLPKISPND 60
+ ++ + I + F +L T +ISP+D
Sbjct: 167 EARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDD 226
Query: 61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
+ LPYSSGTTG+PKGV L+H ++ Q V + N SD + +L VLP FHIY
Sbjct: 227 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSD---DVILCVLPMFHIY 283
Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
N I+ + G ++ +PKF +E + + K T+ +VP ++L +A L
Sbjct: 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDL 343
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE---AKL 237
+SIR V GAAP K L D K + + QGYGMTE P + E K
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS 401
Query: 238 GSTGQL-------------------------------VMLGYLKNEEATKETVDSEGWLH 266
G+ G + +M GYL N AT ET+D +GWLH
Sbjct: 402 GACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+ D+D +IVDR KELIK KG QVAP
Sbjct: 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 336 bits (865), Expect = e-112
Identities = 94/332 (28%), Positives = 156/332 (46%), Gaps = 46/332 (13%)
Query: 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKS-----KNIFGFKQLVTSQPPDFQLPKISP 58
+ L+ + T+ + +++ + D Q F+ ++
Sbjct: 131 SKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDR 190
Query: 59 -NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
+A++ SSG+TG+PKGV+L+H N P N + + VL+V+PF
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV----SPGTAVLTVVPFH 246
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
H +G L ++ G ++ + KF ET+++ + YK T + +VP+L L +
Sbjct: 247 HGFGMFTTLGYLIC-GFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK 305
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL 237
L+++ E+ G AP +K + + ++ +RQGYG+TET+ + T + K
Sbjct: 306 YDLSNLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKP 361
Query: 238 GSTGQL-------------------------------VMLGYLKNEEATKETVDSEGWLH 266
G++G++ +M GY+ N EATKE +D EGWLH
Sbjct: 362 GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLH 421
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
TGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 422 TGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 335 bits (862), Expect = e-112
Identities = 97/332 (29%), Positives = 151/332 (45%), Gaps = 46/332 (13%)
Query: 4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISP----- 58
+ L+ + LP + I++ + D + + + PP F P
Sbjct: 129 SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 188
Query: 59 -NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
+A++ SSG+TG+PKGV L H V P N I +LSV+PF
Sbjct: 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII----PDTAILSVVPFH 244
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
H +G L ++ G ++ + +F E ++ + YK +VP+L F A +
Sbjct: 245 HGFGMFTTLGYLIC-GFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK 303
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL 237
L+++ E+ G AP +K + + ++ IRQGYG+TET+ L T + K
Sbjct: 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFH--LPGIRQGYGLTETTSAILITPEG--DDKP 359
Query: 238 GSTGQL-------------------------------VMLGYLKNEEATKETVDSEGWLH 266
G+ G++ +M GY+ N EAT +D +GWLH
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 419
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+GD+AY+DED +F+IVDR K LIK KG QVAP
Sbjct: 420 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 302 bits (777), Expect = 2e-99
Identities = 80/342 (23%), Positives = 132/342 (38%), Gaps = 58/342 (16%)
Query: 6 QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIF-------GFKQLVTSQPPDFQLPKISP 58
L + E + +F +++ S DF+ K++P
Sbjct: 119 ILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKVNP 178
Query: 59 -NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
D+A++PY+ GTTG+PKGV L+H N A N Q + +T++ +P F
Sbjct: 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-------GLSHMDTIVGCMPMF 231
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS--HPAV 175
H F ++N+++ G + + F E E + KYK T + VP L L + +
Sbjct: 232 HSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSN 290
Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQ----KVQREDITIRQGYGMTETSPCTLYTRFA 231
+ ++ GA P +L++K + K + Q +GMTE P
Sbjct: 291 KTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL 350
Query: 232 IPEAKLGSTGQL-------------------------------VMLGYLKNEEATKET-- 258
+ K + G + GY K E+ +E
Sbjct: 351 RLD-KSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409
Query: 259 --VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ TGDV + DE+G+ + DR KE+IK KG +AP
Sbjct: 410 YDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAP 451
Score = 46.8 bits (112), Expect = 6e-06
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
+++ YK++ V+F+E +PR +GK+LR L+
Sbjct: 507 RISGYKRVRE-VEFVEELPRTASGKLLRRLLR 537
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 261 bits (669), Expect = 6e-84
Identities = 77/394 (19%), Positives = 132/394 (33%), Gaps = 96/394 (24%)
Query: 12 TKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTT 71
I + ++ + + P + + +D+A + ++SGTT
Sbjct: 116 DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT 175
Query: 72 GVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMM 131
G K V + N + C LSVLP +HI G + +L V+
Sbjct: 176 GPQKAVPQTFRNHYASAIGCKES-------LGFDRDTNWLSVLPIYHISGLSVLLRAVI- 227
Query: 132 YGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAA 191
G + + KF E + + + T + +VP L +L +++++ G A
Sbjct: 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---EPYNLQKILLGGA 284
Query: 192 PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ--------- 242
+ ++I+ Q ++ I +GMTET L + A+ + G
Sbjct: 285 KLSATMIETALQY----NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKI 340
Query: 243 ----------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK 286
VM GYL + T + G+ +TGD+A D +GY I DR K
Sbjct: 341 KNPNKEGHGELMIKGANVMNGYLYPTDLTGTFEN--GYFNTGDIAEIDHEGYVMIYDRRK 398
Query: 287 ELIKVKGNQVAP------------------------------------------------ 298
+LI G + P
Sbjct: 399 DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAY 458
Query: 299 -YKKLAG-----GVKFLETIPRNPAGKVLRNELK 326
K LA + ++T+P GK+ RN+L
Sbjct: 459 LSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLY 492
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 255 bits (655), Expect = 7e-82
Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 48/323 (14%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
P + I A + T+ G F +DLA +
Sbjct: 108 PSKRDGIAAIAAKVGATVETLGPDGRGS-------LTDAAAGASEAFATIDRGADDLAAI 160
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
Y+SGTTG KG LSH+N A N V T + ++ LP +H +G
Sbjct: 161 LYTSGTTGRSKGAMLSHDNLASNSLTLVDY-------WRFTPDDVLIHALPIYHTHGLFV 213
Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
NV + MI +PKF P+ ++ + + T+L VP+ L P +T E +R
Sbjct: 214 ASNVTLFARGSMIFLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQSPRLTKETTGHMR 271
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR----------FAIP- 233
G+AP ++ + + + YGMTET+ T A+P
Sbjct: 272 LFISGSAPLLADTHREWSA---KTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPG 328
Query: 234 -EAKL-----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDE 275
A++ G G + V GY + E TK +G+ TGD+ DE
Sbjct: 329 VSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE 388
Query: 276 DGYFYIVDRTKELIKVKGNQVAP 298
GY +I+ R K+L+ G V P
Sbjct: 389 RGYVHILGRGKDLVITGGFNVYP 411
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 256 bits (656), Expect = 8e-82
Identities = 74/323 (22%), Positives = 117/323 (36%), Gaps = 49/323 (15%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
V I A G + + S D + +D +
Sbjct: 123 APSAPVIDAIRAQADPPGTVTDWIGADS-------LAERLRSAAADEPAVECGGDDNLFI 175
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
Y+SGTTG PKGV +H + ++ +L LP FH+
Sbjct: 176 MYTSGTTGHPKGVVHTHESVHSAASSWAST-------IDVRYRDRLLLPLPMFHVAALTT 228
Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
++ M G+ +I++P+F +V+ + I VP++L F+ P R
Sbjct: 229 VIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFR 287
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ-- 242
G AP ++LI + K +I + QGY +TE+ K GS G+
Sbjct: 288 YFITGGAPMPEALIKIYAAK----NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343
Query: 243 ---------------------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDE 275
+++ Y EAT++ D GW TGD+ D+
Sbjct: 344 MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDD 402
Query: 276 DGYFYIVDRTKELIKVKGNQVAP 298
+GY YI DR K++I G V P
Sbjct: 403 EGYLYIKDRLKDMIISGGENVYP 425
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 241 bits (618), Expect = 5e-76
Identities = 66/326 (20%), Positives = 118/326 (36%), Gaps = 44/326 (13%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKN-IFGFKQLVTSQPPDFQLPKISPNDLAM 63
L++ T+ + + ++V + F++L+ + P + +D+A
Sbjct: 128 GALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAF 187
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
YSSG+TG PKG +H N E P + I + V S F YG
Sbjct: 188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKP--ILGI----AENDVVFSAAKLFFAYGLG 241
Query: 124 GILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
L + G I + + T + +V+++PT+ + VP+L + P + +
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301
Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ 242
IR T + + ++F I G G TE L R + G+TG+
Sbjct: 302 IRICTSAGEALPREIGERFTAHF---GCEILDGIGSTEMLHIFLSNRAG--AVEYGTTGR 356
Query: 243 ------------------------------LVMLGYLKNEEATKETVDSEGWLHTGDVAY 272
+ Y N E ++ T W+ +GD
Sbjct: 357 PVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYC 415
Query: 273 YDEDGYFYIVDRTKELIKVKGNQVAP 298
+G + R+ +++KV G V+P
Sbjct: 416 RLPNGCYVYAGRSDDMLKVSGQYVSP 441
Score = 36.8 bits (86), Expect = 0.008
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 285 TKELIK-VKGNQVAPYK--KLAGGVKFLETIPRNPAGKVLRNELK 326
+EL VK +++AP+K + + F++ +P+ GK+ R +L+
Sbjct: 487 AEELKAFVK-DRLAPHKYPRD---IVFVDDLPKTATGKIQRFKLR 527
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 238 bits (611), Expect = 3e-75
Identities = 71/326 (21%), Positives = 112/326 (34%), Gaps = 56/326 (17%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
++ + +L + +G FK L + P P+ D ++
Sbjct: 111 TDYRDIVAGVLPSLGGVKKAYAIGDGSG---PFAPFKDLASDTPFS--APEFGAADGFVI 165
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
+++ G P+G +S N + V T + L +LP FH+ G
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDA-------WRLTEADVNLGMLPLFHVTGLGL 218
Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
+L + G + KF P + +K T++ +L + A P LAS+R
Sbjct: 219 MLTLQQA-GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQLASLR 275
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ-- 242
VT P T + + T +G +ETS + + + S G+
Sbjct: 276 AVTGLDTPETIERFEA-----TCPNATFWATFGQSETSGLSTFAP---YRDRPKSAGRPL 327
Query: 243 ----------------------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYD 274
V GY N AT+ GW HTGD+ +D
Sbjct: 328 FWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFD 386
Query: 275 EDGYFYIVDRT--KELIKVKGNQVAP 298
DGY + R KELIK G V P
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYP 412
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 231 bits (592), Expect = 2e-72
Identities = 67/291 (23%), Positives = 108/291 (37%), Gaps = 46/291 (15%)
Query: 43 LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT 102
+ D A++ Y+SGTTG PKG + A L+
Sbjct: 139 VDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW----- 193
Query: 103 SDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV 162
T ++ ++ LP FH++G + + G + + +F+ E + T+LF V
Sbjct: 194 --TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGV 250
Query: 163 PSLLLFLASHPAVTPEH---LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
P++ +A PE LA R + G+A ++ + + YGMT
Sbjct: 251 PTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA---ATGRRVIERYGMT 307
Query: 220 ETSPCTLYTR----------FAIP--EAKL-------------GSTGQL------VMLGY 248
ET T +P E +L S G++ + Y
Sbjct: 308 ETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEY 367
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT-KELIKVKGNQVAP 298
L +AT +G+ TGD+A D DGY IV R +LIK G ++
Sbjct: 368 LNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGA 418
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 230 bits (589), Expect = 6e-72
Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 40/284 (14%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
S P + P+ P A + Y+SGTTG+PK + + +
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST-----QVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A L S+R VT A ++++ Q YG TE
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETV---HQHLPGEKVNIYGTTEAMN 311
Query: 224 CTLYTR-------FAIP--EAKL-------------GSTGQL-------VMLGYLKNEEA 254
+ E ++ G G+L +GYL +A
Sbjct: 312 SLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371
Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T E + +GW T DVA + +G I+ R ++I G + P
Sbjct: 372 TAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 220 bits (564), Expect = 6e-68
Identities = 72/324 (22%), Positives = 127/324 (39%), Gaps = 52/324 (16%)
Query: 8 LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYS 67
+ ++ + LP + IV G F L +LP++ +D+A L S
Sbjct: 138 RSLARQVQSKLPTLKNIIVAGEAE-------EFLPLEDLHTEPVKLPEVKSSDVAFLQLS 190
Query: 68 SGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN-GIL 126
G+TG+ K + +H++ +L++ V ++ L+ LP H Y + +
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSV--EVCWL-----DHSTVYLAALPMAHNYPLSSPGV 243
Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
V+ G ++ P +P+ + + K TI +VP L + + + L+S++ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303
Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------- 233
G A + + K T++Q +GM E YTR P
Sbjct: 304 QVGGAKFSAEAARRVKAVF---GCTLQQVFGMAEGLVN--YTRLDDPEEIIVNTQGKPMS 358
Query: 234 ---EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYD 274
E+++ G TG L + GY K EE + +G+ TGD+
Sbjct: 359 PYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418
Query: 275 EDGYFYIVDRTKELIKVKGNQVAP 298
DGY + R K+ I G +VA
Sbjct: 419 RDGYIVVEGRAKDQINRGGEKVAA 442
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 219 bits (561), Expect = 8e-67
Identities = 59/321 (18%), Positives = 114/321 (35%), Gaps = 52/321 (16%)
Query: 13 KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
+ R ++ + + + DF +++A S GTTG
Sbjct: 143 TFVTEHSSIRVVQLLNDSGE-----HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTG 197
Query: 73 VPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV-VMM 131
PK + +HN+ ++ + V +I T Q L +P H Y + ++ V +
Sbjct: 198 TPKLIPRTHNDYYYSVRRSV--EICQF-----TQQTRYLCAIPAAHNYAMSSPGSLGVFL 250
Query: 132 YGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL--ASHPAVTPEHLASIREVTCG 189
G ++ + + K++ + +VP + A + LAS++ + G
Sbjct: 251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVG 310
Query: 190 AAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP---------------- 233
A + +L + ++ ++Q +GM E YTR
Sbjct: 311 GARLSATLAARIPAEI---GCQLQQVFGMAEGLVN--YTRLDDSAEKIIHTQGYPMCPDD 365
Query: 234 EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDG 277
E + G G+L GY K+ + D+ G+ +GD+ D +G
Sbjct: 366 EVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEG 425
Query: 278 YFYIVDRTKELIKVKGNQVAP 298
Y + R K+ I G ++A
Sbjct: 426 YITVQGREKDQINRGGEKIAA 446
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 218 bits (557), Expect = 8e-67
Identities = 57/325 (17%), Positives = 116/325 (35%), Gaps = 50/325 (15%)
Query: 8 LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYS 67
+ + + +++ + + + T +++A S
Sbjct: 143 NQFIDSLHDVNLSPEIILMLNHQAT---DFGLLDWIETPAETFVDFSSTPADEVAFFQLS 199
Query: 68 SGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GI 125
G+TG PK + +HN+ ++ +I S +L LP H + + G
Sbjct: 200 GGSTGTPKLIPRTHNDYDYSVRASA--EICGL-----NSNTRLLCALPAPHNFMLSSPGA 252
Query: 126 LNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
L V+ G ++ P P + +++ + +VPS ++ A + + S++
Sbjct: 253 LGVLHA-GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL 311
Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------ 233
+ G A +SL + + + + ++Q +GM E YTR
Sbjct: 312 LQVGGASFPESLARQVPEVL---NCKLQQVFGMAEGLVN--YTRLDDSDEQIFTTQGRPI 366
Query: 234 ----EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
E K+ G G L GY ++ E + D + + ++GD+
Sbjct: 367 SSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQR 426
Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
DG +V R K+ I G ++A
Sbjct: 427 TPDGNLRVVGRIKDQINRGGEKIAS 451
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 177 bits (451), Expect = 2e-51
Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 55/327 (16%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
P LL + I L + +V+ + + +++ + + ++P+ +
Sbjct: 127 PNLLPLVEAIRGELKTVQHFVVMDEKAPE--GYLAYEEALGEEADPVRVPE---RAACGM 181
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
Y++GTTG+PKGV SH ++ D + D VL V+P FH+ +
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA-LSEKDV----VLPVVPMFHVNAWCL 236
Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
++ ++ P+ P + +E T VP++ L LA + T L ++R
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 296
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTRF---------- 230
+ G + A +SLI +F+ R + +RQGYG+TETSP + +
Sbjct: 297 RLVVGGSAAPRSLIARFE----RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 352
Query: 231 -------AIP--EAKL-----------GST-GQL------VMLGYLKNEEATKETVDSEG 263
IP ++ G G++ + GY NEEAT+ + +G
Sbjct: 353 LKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 412
Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIK 290
+ TGD+A +DE+GY I DR K+LIK
Sbjct: 413 FFRTGDIAVWDEEGYVEIKDRLKDLIK 439
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 141 bits (358), Expect = 5e-38
Identities = 50/327 (15%), Positives = 108/327 (33%), Gaps = 61/327 (18%)
Query: 13 KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
+ + P+ R ++V + FK+L+ + + + + ++SGT+G
Sbjct: 162 TVASECPSLRIKLLVSEKSCD--GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSG 219
Query: 73 VPKGVKLSHNNCAVNLE-----QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILN 127
+PK + S+++ + + + + SDT +
Sbjct: 220 LPKMAEHSYSSLGLKAKMDAGWTGLQASDI-MWTISDTGWIL-------NILCSLMEPWA 271
Query: 128 V---VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
+ ++ + PKF P ++ + Y + P + L ++ ++
Sbjct: 272 LGACTFVHLL-----PKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQ 325
Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-----SPCTLYTR-----FAIP- 233
++ ++ + + IR+ YG TET T+ + A
Sbjct: 326 NCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASC 382
Query: 234 -----------EAKLGSTGQLV-----------MLGYLKNEEATKETVDSEGWLHTGDVA 271
G+ G + GY+ N + T + + GD
Sbjct: 383 YDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRG 441
Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
DEDGYF + R ++I G ++ P
Sbjct: 442 IKDEDGYFQFMGRADDIINSSGYRIGP 468
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 124 bits (314), Expect = 5e-32
Identities = 68/329 (20%), Positives = 109/329 (33%), Gaps = 86/329 (26%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
++ +Q I ND+A L Y+SG+T PKGV +SH+N NL + I
Sbjct: 154 NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNK-----IFTSFHM--N 206
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTILFV 161
+ + S LP H G G + + G+ I + F+ P ++++ + KYK TI
Sbjct: 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISG- 265
Query: 162 VPSLLLFLASHPAVTPEHLA-----SIREVTCGAAPATKSLIDKFKQKVQ----REDITI 212
P+ + E S GA P + ++ F Q + R++
Sbjct: 266 SPNFAYDYCVK-RIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKE-AF 323
Query: 213 RQGYGMTETS-----------PCTLY---------------------------------- 227
YG+ E + TL
Sbjct: 324 YPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEV 383
Query: 228 ------TRFAIPEAKLGS---TGQLVMLGYLKNEEATKET--------VDSEGWLHTGDV 270
T ++G V GY E T+ S +L TGD+
Sbjct: 384 KIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDL 443
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
+ + Y+ R K+LI + G P
Sbjct: 444 GFLH-ENELYVTGRIKDLIIIYGKNHYPQ 471
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 122 bits (307), Expect = 2e-31
Identities = 61/320 (19%), Positives = 98/320 (30%), Gaps = 82/320 (25%)
Query: 42 QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
L P + + A L Y+SG+T P GV +SH N VN EQ +
Sbjct: 166 LLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS-GYFADTD 224
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPT 157
++S LPF+H G + ++ G + + P ++ +
Sbjct: 225 GIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA 284
Query: 158 ILFVVPSLLLFLASHPAVTPEHLA-----SIREVTCGAAPATKSLIDKFKQKVQ----RE 208
P+ LA+ T + +A +I + G+ + I +F + +E
Sbjct: 285 FS-AAPNFAFELAAR-RTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQE 342
Query: 209 DITIRQGYGMTE-TSPCT-----------------LYTRFAIPEAKLGST---------- 240
IR Y + E T L A P A G+T
Sbjct: 343 R-VIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS 401
Query: 241 -------------------------GQLVMLGYLKNEEATKET-----------VDSEGW 264
G V GY + + ++ T W
Sbjct: 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW 461
Query: 265 LHTGDVAYYDEDGYFYIVDR 284
L TGD + DG +I+ R
Sbjct: 462 LRTGDSGFVT-DGKMFIIGR 480
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 120 bits (303), Expect = 2e-30
Identities = 69/334 (20%), Positives = 116/334 (34%), Gaps = 80/334 (23%)
Query: 13 KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLP----KISPNDLAMLPYSS 68
+ A + G I F++ + P F+ P D+ ++ +SS
Sbjct: 176 EAHAECGDIPLKKAKVGGDVLEGWI-DFRKELEESSPIFERPTGEVSTKNEDICLVYFSS 234
Query: 69 GTTGVPKGVKLSHN-----NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
GT G PK V+ + Q V D + H +D+
Sbjct: 235 GTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGL-HYTVADSGWGK-------CVWGKLY 286
Query: 124 GILNV---VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
G V +Y +F + +E KY T P++ FL ++ +
Sbjct: 287 GQWIAGCAVFVYDY-----DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNF 340
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET------SPCTLYTRFAIPE 234
++++ P + ++F + I + +G+G TET P E
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLEFT---GIKLMEGFGQTETVVTIATFPWM--------E 389
Query: 235 AKLGS------------------------TGQLV-----------MLGYLKNEEATKETV 259
K GS G++V + Y K+ E T+ET
Sbjct: 390 PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW 449
Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
+G+ HTGD+A+ DEDGY + V R ++IK G
Sbjct: 450 -HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSG 482
Score = 27.1 bits (61), Expect = 8.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 285 TKELIK-VKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
EL VK N APYK ++F+ +P+ +GK+ R E++
Sbjct: 534 KNELQDHVK-NVTAPYKYPRI-IEFVPELPKTISGKIRRVEIR 574
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 118 bits (299), Expect = 5e-30
Identities = 68/321 (21%), Positives = 109/321 (33%), Gaps = 80/321 (24%)
Query: 48 PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ 107
D L + PND+A L Y+SG+T P+GV ++H NL H I
Sbjct: 165 EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI------KLRPG 218
Query: 108 ETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTILFVVP 163
+ +S LPF+H G G L + + + + P +++ + K + T+ V P
Sbjct: 219 DRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVS-VAP 277
Query: 164 SLLLFLASHPAVTPEHLA-----SIREVTCGAAPATKSLIDKFKQKVQ----REDITIRQ 214
L V + LA R GA P + + +F + + T
Sbjct: 278 PFGYELCQR-RVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNK-TFMP 335
Query: 215 GYGMTETS-----------PCTLY---------TRFAIPEAKLGSTGQLVMLG------- 247
YG+ E + + P A+ + V G
Sbjct: 336 CYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHG 395
Query: 248 -----------------------------YLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
Y ++ + E + GWL TGD+ Y DGY
Sbjct: 396 IEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEI-AATGWLDTGDLGYLL-DGY 453
Query: 279 FYIVDRTKELIKVKGNQVAPY 299
Y+ R K+LI ++G + P
Sbjct: 454 LYVTGRIKDLIIIRGRNIWPQ 474
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 84.0 bits (207), Expect = 2e-18
Identities = 38/203 (18%), Positives = 57/203 (28%), Gaps = 30/203 (14%)
Query: 47 QPPDFQLPKISPND-LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
+P +P+ P D + S GTTG PK V + + S
Sbjct: 78 EPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGN 137
Query: 106 SQETVLSVLP-FFHIYGFNGILNVVMMYGMHMITIP-------KFTPETYIECVVKY--- 154
L+ +P HI G + G +I + E V KY
Sbjct: 138 ----TLAAIPTGPHIVGA-INKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHH 192
Query: 155 ------------KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFK 202
L P +L L P V + S+ ++T G I
Sbjct: 193 LVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIA 252
Query: 203 QKVQREDITIRQGYGMTETSPCT 225
++ D YG T +
Sbjct: 253 SEIL-PDCEFSASYGSTSALGVS 274
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 80.7 bits (200), Expect = 4e-17
Identities = 50/283 (17%), Positives = 87/283 (30%), Gaps = 63/283 (22%)
Query: 42 QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
++ P + + +D + ++SGTTG PKGV++SH+N ++ + D +P
Sbjct: 128 SAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDN-LLSFTNWMIEDAAFDVP 186
Query: 102 TSDTSQETVLSVLPF------FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVV 152
+L+ P+ + + G + +PK + +
Sbjct: 187 KQP----QMLAQPPYSFDLSVMYWAP-------TLALGGTLFALPKELVADFKQLFTTIA 235
Query: 153 KYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI 212
+ I PS + ++ T S K ++ I
Sbjct: 236 QLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFP--SAKI 293
Query: 213 RQGYGMTETSPCTLYTRFAIPEAKL-----------------------------GSTGQL 243
YG TE + + I + G G++
Sbjct: 294 INAYGPTEATVAL--SAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEI 351
Query: 244 ------VMLGYLKNEEATKET-VDSEG-WL-HTGDVAYYDEDG 277
V GYL N E T E +G HTGD+ ED
Sbjct: 352 IVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDN 394
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 75.4 bits (186), Expect = 3e-15
Identities = 54/308 (17%), Positives = 95/308 (30%), Gaps = 51/308 (16%)
Query: 5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
+ V + T V+ ++ F + +++Q L N A L
Sbjct: 127 AAMAFVCDNNFDGVELPPETKVLDTKNQ------SFIENLSTQDTSDILNNYPENLDAYL 180
Query: 65 PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
Y+SG+TG PKGV++S +N + I N + + + F+
Sbjct: 181 LYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNV--APKSLELGGVGKFLCLASRAFDV 237
Query: 125 -ILNVVM--MYGMHMITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
I + + +G+ +T + + + T +VPSLL PE
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDA 293
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAK---- 236
+ + G T + + + + YG TE + R
Sbjct: 294 PHLVYLGVGGEKMTPRTQQIWS---SSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIG 350
Query: 237 --------------------LGSTGQL------VMLGYLKNEEATKETVDSEGWLH-TGD 269
G G+L V GYL +A + ++ TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410
Query: 270 VAYYDEDG 277
+ D D
Sbjct: 411 IVRMDADS 418
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 74.2 bits (183), Expect = 9e-15
Identities = 50/282 (17%), Positives = 85/282 (30%), Gaps = 65/282 (23%)
Query: 42 QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
Q + I PND A + Y+SGTTG PKG +H N I +
Sbjct: 590 QTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHAN------------IQGLVK 637
Query: 102 TSDTSQETVLSVLPFFHIYGFNG-ILNVVM--MYGMHMITIPK---FTPETYIECVVKYK 155
D + Y F+ + + +I + E + +++
Sbjct: 638 HVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQEN 697
Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQREDITIR 213
++F +L L + + +R + G A + K + + +
Sbjct: 698 VNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASV--PHVRKALRIMG--PGKLI 750
Query: 214 QGYGMTETSPCTLYTRFAIPEAK--------------------------LGSTGQL---- 243
YG TE + G+ G+L
Sbjct: 751 NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISG 810
Query: 244 --VMLGYLKNEEATKET-VD---SEGWL--HTGDVAYYDEDG 277
V GY+ + TKE ++ G TGD+A + DG
Sbjct: 811 MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDG 852
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 72.9 bits (180), Expect = 2e-14
Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 36/206 (17%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
+ P P + + +A + +SSGTTG PK + +H I
Sbjct: 151 AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAG------------ITRLCLGQSF 198
Query: 106 SQETVLSVLPFFHIYGFN-------GILNVVMMYGMHMITIPK--FTPETYIECVVKYKP 156
F+ G L + G + P + + +
Sbjct: 199 LAFAPQMRFLVNSPLSFDAATLEIWGAL----LNGGCCVLNDLGPLDPGVLRQLIGERGA 254
Query: 157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQREDITIRQ 214
++ SL L P+ L +R++ G + + + + +
Sbjct: 255 DSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSV--PHVRRALLRH--PRLHLVN 307
Query: 215 GYGMTETSPCTLYTRFAIPEAKLGST 240
GYG TE + T + + L
Sbjct: 308 GYGPTENTTFT--CCHVVTDDDLEED 331
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 71.8 bits (177), Expect = 4e-14
Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-----TSQE 108
+ ++ + Y+SG+TG PKGV++++N +V+ + + +
Sbjct: 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNC------------LVSFTKWAVEDFNLQTGQ 186
Query: 109 TVLSVLPF------FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTIL 159
L+ PF IY ++ G + I K P+ + + +
Sbjct: 187 VFLNQAPFSFDLSVMDIYP-------SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVW 239
Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
PS + + L +++ + K ++ TI YG T
Sbjct: 240 TSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP--KATIMNTYGPT 297
Query: 220 ETS 222
E +
Sbjct: 298 EAT 300
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 71.8 bits (177), Expect = 5e-14
Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 41/200 (20%)
Query: 45 TSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD 104
Q + ++ + Y+SG+TG PKGV++S N + +
Sbjct: 129 NEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAAN------------LQSFTDWIC 176
Query: 105 -----TSQETVL---------SVLPFFHIYGFNGILNVVMMYGMHMITIPKFT---PETY 147
+ + L SV+ + L G + + K P+
Sbjct: 177 ADFPVSGGKIFLNQAPFSFDLSVMDLY------PCL----QSGGTLHCVTKDAVNKPKVL 226
Query: 148 IECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQR 207
E + K + PS + P + + L S+ ++
Sbjct: 227 FEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFP- 285
Query: 208 EDITIRQGYGMTETSPCTLY 227
I YG TE +
Sbjct: 286 -KAKIFNTYGPTEATVAVTS 304
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 69.4 bits (171), Expect = 3e-13
Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 44/200 (22%)
Query: 54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-----TSQE 108
DLA + Y+SGTTG PKG L H I N + T ++
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKG------------ISNLKVFFENSLNVTEKD 224
Query: 109 TVLSVLPF------FHIYG--FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
+ + ++ G +++ + + + + + T++
Sbjct: 225 RIGQFASISFDASVWEMFMALLTGASLYIILKDTIN------DFVKFEQYINQKEITVIT 278
Query: 161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
+ P+ ++ L PE + SI+ + + + SL++K+K+KV YG TE
Sbjct: 279 LPPTYVVHLD------PERILSIQTLITAGSATSPSLVNKWKEKVT-----YINAYGPTE 327
Query: 221 TSPCTLYTRFAIPEAKLGST 240
T+ C T + + +G +
Sbjct: 328 TTICA--TTWVATKETIGHS 345
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 45.0 bits (107), Expect = 2e-05
Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 43/177 (24%)
Query: 67 SSGTTGVPKGVKLSHN-------NCAVNLEQC-VHP-DIVNHIPTSDTSQETVLSVLPFF 117
SSGTTG P + S + A L + D+ +
Sbjct: 94 SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG--------------- 138
Query: 118 HIYG-FNGILNVVMMYGMH---MITIPKFT--PETYIECVVKYKPTILFVVPSLLLFLAS 171
YG F G L YG +T+P + I+ + +K T L +PS + LA
Sbjct: 139 --YGMFTGGLG--FQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAE 194
Query: 172 HPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE-DITIRQGYGMTETSPC 224
+ P +++ + GA P T D+ ++K++R ++ +GMTE +
Sbjct: 195 VFQEEGIDPRET-TLKTLVIGAEPHT----DEQRRKIERMLNVKAYNSFGMTEMNGP 246
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 43.4 bits (103), Expect = 7e-05
Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 41/176 (23%)
Query: 67 SSGTTGVPKGVKLSHN-------NCAVNLEQC-VHP-DIVNHIPTSDTSQETVLSVLPFF 117
SSGTTG P V + A ++ D V H+
Sbjct: 98 SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKV-HVSYG-------------- 142
Query: 118 HIYG-FNGILNVVMMYGMHMI---TIPKFT--PETYIECVVKYKPTILFVVPSLLLFLAS 171
YG F G L YG IP E ++ + ++P I+ V PS +L +A
Sbjct: 143 --YGLFTGGLG--AHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198
Query: 172 HPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPC 224
+ P S+R GA P T + +Q++ I YG++E
Sbjct: 199 EIERQGLDPVQS-SLRIGIFGAEPWTNDMRVAIEQRM---GIDAVDIYGLSEVMGP 250
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 42.7 bits (101), Expect = 1e-04
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 41/172 (23%)
Query: 67 SSGTTGVPKGVKLSHN-------NCAVNLEQC-VHP-DIVNHIPTSDTSQETVLSVLPFF 117
SSGTTG P V + A ++ P D + H
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTL-HNAFG-------------- 144
Query: 118 HIYG-FNGILNVVMMYGMHMI---TIPKFT--PETYIECVVKYKPTILFVVPSLLLFLAS 171
YG F G L + YG + +P E ++ + ++P I+ V PS +L L
Sbjct: 145 --YGLFTGGLG--IHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLID 200
Query: 172 HPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
+ P S++ GA P T++L ++ + R I YG++E
Sbjct: 201 EMVRQGMDPAES-SLKIGIFGAEPWTQALRNEVE---TRVGIDALDIYGLSE 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.003
Identities = 50/315 (15%), Positives = 91/315 (28%), Gaps = 121/315 (38%)
Query: 56 ISPNDLAMLPYSSGTTGVPKGVKLS-------------HNNCAVNLE---------QCVH 93
+P +L Y G TG +G+ ++ + + +
Sbjct: 258 FTPGELR--SYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 94 P----------DIVNH---IPT-----SDTSQETVLSV-------LPF---FHIYGFNGI 125
P D + + +P+ S+ +QE V LP I NG
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 126 LNVVM------MYGMHMITIPKFTPETYIECVVKY---KPTILFVVPSLLLFLASHPAVT 176
N+V+ +YG+++ P + + + K F FL P +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK--FSN----RFL---PVAS 425
Query: 177 PEH---LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ------------GYGMTET 221
P H L PA+ D + + + +++ G +
Sbjct: 426 PFHSHLL----------VPAS----DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 222 SP------CTLYTRFAI--PEA-KLGST-------GQLVMLGYL--KNEEATKETVDSEG 263
S R + + +T G LG L +N++ T V G
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Query: 264 WLHTGDVAYYDEDGY 278
L D+ G+
Sbjct: 532 TLDINPD---DDYGF 543
Score = 35.0 bits (80), Expect = 0.034
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 76/203 (37%)
Query: 155 KPTIL--------FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQ 206
+P L +VP+ F+AS + + + E T G A
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAA-------------- 50
Query: 207 REDITIRQGYGMTETSPCTLYTRF------AIPEAKLGSTGQLVML-------GYLKNEE 253
+D T+P L +F + +K+G Q++ L YL+ +
Sbjct: 51 -DD---------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 254 ATKETVDSEGWLHTGDVAY---YDEDGYFYIVDRTKELIK--VKGNQVA--PYKKLAGGV 306
+H +A + D + +TKELIK + +A P+ K +
Sbjct: 101 -----------IHA--LAAKLLQENDT---TLVKTKELIKNYITARIMAKRPFDKKSNS- 143
Query: 307 KFLETIPRNPAGKVLRNELKVFG 329
+ A V +FG
Sbjct: 144 ALFRAVGEGNAQLVA-----IFG 161
Score = 29.6 bits (66), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 14 IGA-TLPNFRGT---IVVGGEHDKSKNI-FGFKQ 42
+G T N GT ++V G D + + +GFKQ
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 27.3 bits (60), Expect = 8.8
Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 77/189 (40%)
Query: 8 LEVGTKIGATLPNFRGTIVVGG-------------------EHDKSKNIFGFKQLVTSQ- 47
L G ++ +L N +VV G D+S+ F S+
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-------SER 412
Query: 48 PPDFQ---LPKISP--------------NDLAM--LPYSSGTTGVPKGVKLSHNNCAVNL 88
F LP SP DL + +++ +P V +L
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VY--DTFDGSDL 468
Query: 89 EQC---VHPDIVNHI-------PTSDTSQETVLSVLPFFHIYGF-----NGILNVVMM-- 131
+ IV+ I T+ + T HI F +G+ +
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKAT--------HILDFGPGGASGLGVLTHRNK 520
Query: 132 --YGMHMIT 138
G+ +I
Sbjct: 521 DGTGVRVIV 529
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.007
Identities = 39/271 (14%), Positives = 68/271 (25%), Gaps = 108/271 (39%)
Query: 80 SHNNCAVNLEQCVHPDIVNH--------IPTSDTSQETVLSVLPFFHIYGFNGILNVVMM 131
+ NC + L + N + T LS HI
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS----------- 290
Query: 132 YGMHMITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190
+ TP+ ++KY +P +L P L+ I
Sbjct: 291 ----LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL------TTNPRRLSII-----AE 335
Query: 191 A----PAT-----KSLIDKFKQKVQR-----EDITIRQGYGMTETSPCTLYTRFAI-PE- 234
+ AT DK ++ E R+ ++ R ++ P
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----------MFDRLSVFPPS 384
Query: 235 AKLGSTGQLVML-GYLKNEEA------------------------------TKETVDSEG 263
A + T L ++ + + K +++E
Sbjct: 385 AHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 264 WLHTGDVAYYD--------------EDGYFY 280
LH V +Y+ D YFY
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 34.9 bits (81), Expect = 0.034
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
+ +GD A DEDGY++I R +++ V G
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSG 524
Score = 29.5 bits (67), Expect = 1.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 66 YSSGTTGVPKGV 77
Y+SG+TG PKGV
Sbjct: 263 YTSGSTGKPKGV 274
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 34.1 bits (79), Expect = 0.072
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
TGD A D+DGY +I+ R +++ V G
Sbjct: 507 TGDGAAKDKDGYIWILGRVDDVVNVSG 533
Score = 29.5 bits (67), Expect = 1.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 66 YSSGTTGVPKGV 77
Y+SG+TG PKGV
Sbjct: 269 YTSGSTGAPKGV 280
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 29.3 bits (66), Expect = 2.1
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 108 ETVLSVLPF-FHIYGFNGILNVVMMYG------MHMITIPKFTPETYIECVVKYKPTILF 160
+T L + + + + N + M I +P E + + +
Sbjct: 127 KTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQ 186
Query: 161 VVPSLLLFLASHPAV 175
+ SL +++ V
Sbjct: 187 LKSSL---VSTAEGV 198
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 28.4 bits (63), Expect = 3.5
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 148 IECVVKYKPTILFVVPSLLLFLASHPAVTP---EHLASIREVTCGAAPATKSLIDKFKQK 204
+ +YKP PSL+L A PA E +A +++ K+ IDK
Sbjct: 28 FNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVL 87
Query: 205 VQREDITIRQGYGMTETSPCTLY 227
E + G TE +
Sbjct: 88 FGAEILKKIPGRVSTEVDARLSF 110
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase,
signaling protein,transfera cycle complex; HET: MES AGS;
2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Length = 293
Score = 28.4 bits (62), Expect = 3.8
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 135 HMITIPKFTPETYIECVVKY----KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190
H P + Y + K+ ++ + + L +P T L + R +
Sbjct: 68 HSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTAT 127
Query: 191 APATKSLIDKF 201
ATK L D F
Sbjct: 128 TVATKGLCDSF 138
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2,
MCSG, protein structur initiative; 1.91A {Vibrio
parahaemolyticus}
Length = 174
Score = 27.0 bits (60), Expect = 7.1
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 273 YDEDGYFYIVDRT 285
++ DGYF+ D
Sbjct: 61 FESDGYFFAYDSQ 73
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis
receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A
{Vibrio parahaemolyticus}
Length = 146
Score = 26.5 bits (59), Expect = 7.4
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 273 YDEDGYFYIVDRT 285
++ DGYF+ D
Sbjct: 54 FESDGYFFAYDSQ 66
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 27.2 bits (60), Expect = 7.6
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 148 IECVVKYKPTILFVVPSLLLFLASHPAVTP---EHLASIREVTCGAAPATKSLIDKFKQK 204
I + Y+P PSL+L A P + +A ++ + A DK
Sbjct: 41 IAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVN 100
Query: 205 VQREDITIRQGYGMTETSPCTLY 227
+ E + + G TE Y
Sbjct: 101 IGLEILKLVPGRISTEVDARLSY 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,126,140
Number of extensions: 305777
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 72
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)