RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12107
(334 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 197 bits (502), Expect = 1e-58
Identities = 53/299 (17%), Positives = 102/299 (34%), Gaps = 46/299 (15%)
Query: 40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
++ L+ P+ Q ++ D + Y+SG+TG PKGV + V
Sbjct: 233 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF--- 289
Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYK 155
+ + G + +L + G + TP + V K++
Sbjct: 290 ---DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 346
Query: 156 PTILFVVPSLLLFLASHP--AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR 213
IL+ P+ + L + A+ +S+R + P + + +K+ +E +
Sbjct: 347 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 406
Query: 214 QGYGMTETSPCTLYTRFAIPEAKLGSTGQL------------------------------ 243
+ TET + E K GS +
Sbjct: 407 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW 466
Query: 244 --VMLGYLKNEEATKETVDS--EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ E ++T S + +GD A DEDGY++I R +++ V G+++
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGT 525
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 164 bits (416), Expect = 2e-46
Identities = 54/299 (18%), Positives = 101/299 (33%), Gaps = 49/299 (16%)
Query: 43 LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT 102
+ + D L Y+SG+TG PKGV+ S + + H
Sbjct: 223 EKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTH--- 279
Query: 103 SDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTI 158
++ + I G ++ ++YG + Y + + ++K T
Sbjct: 280 ---QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ 336
Query: 159 LFVVPSLLLFL--ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
+V P+ L L A + L S+R + P + + + +K+ + +I I Y
Sbjct: 337 FYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY 396
Query: 217 GMTETSPCTLYTRF-AIPEAKLGSTGQLV------------------------------- 244
TE+ + + K GS
Sbjct: 397 WQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAW 456
Query: 245 ---MLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
KN + +T G+ TGD A D+DGY +I+ R +++ V G++++
Sbjct: 457 PSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 515
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 147 bits (372), Expect = 8e-41
Identities = 80/339 (23%), Positives = 133/339 (39%), Gaps = 55/339 (16%)
Query: 1 MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
+ P LL + I L + +V+ + + + + P
Sbjct: 116 LLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVP-----ERA 170
Query: 61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
+ Y++GTTG+PKGV SH ++ D + ++ VL V+P FH+
Sbjct: 171 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-----SEKDVVLPVVPMFHVN 225
Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
+ ++ ++ P+ P + +E T VP++ L LA + T L
Sbjct: 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL 285
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---------A 231
++R + G + A +SLI +F +R + +RQGYG+TETSP +
Sbjct: 286 KTLRRLVVGGSAAPRSLIARF----ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341
Query: 232 IPEAKLGSTGQ--------------------------------LVMLGYLKNEEATKETV 259
TG + GY NEEAT+ +
Sbjct: 342 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 401
Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+G+ TGD+A +DE+GY I DR K+LIK G ++
Sbjct: 402 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 440
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 131 bits (331), Expect = 5e-35
Identities = 89/321 (27%), Positives = 142/321 (44%), Gaps = 42/321 (13%)
Query: 13 KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISP------NDLAMLPY 66
+ LP + I++ + D + + + PP F P +A++
Sbjct: 135 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMN 194
Query: 67 SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
SSG+TG+PKGV L H V + I + +T + + FH
Sbjct: 195 SSGSTGLPKGVALPHRTACVR-----FSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 249
Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
++ G ++ + +F E ++ + YK +VP+L F A + L+++ E+
Sbjct: 250 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI 309
Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR----------FAIP--- 233
G AP +K + + ++ IRQGYG+TET+ L T +P
Sbjct: 310 ASGGAPLSKEVGEAVAKR--FHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 367
Query: 234 ----------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDG 277
+ G+L +M GY+ N EAT +D +GWLH+GD+AY+DED
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427
Query: 278 YFYIVDRTKELIKVKGNQVAP 298
+F+IVDR K LIK KG QVAP
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAP 448
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 100 bits (250), Expect = 3e-24
Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 34/281 (12%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
S P + P+ P A + Y+SGTTG+PK + + + H
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR---- 195
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
VL ++P +H+ GF +L + + + +F P ++ V + + T LF P+
Sbjct: 196 -HNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
L LA+ A + L S+R VT A ++++ Q + E + I +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLY 314
Query: 224 CTLYTRFAIPEAKLGSTGQLV--------------------------MLGYLKNEEATKE 257
S ++V +GYL +AT E
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 258 TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
+ +GW T DVA + +G I+ R ++I G + P
Sbjct: 375 KLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 89.2 bits (220), Expect = 2e-20
Identities = 57/290 (19%), Positives = 100/290 (34%), Gaps = 54/290 (18%)
Query: 46 SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
+ + +P DLA + Y+SGTTG PKG L H + + V
Sbjct: 154 REGTNLHVP-SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEK----- 207
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
+ F F+ + + M + ++ +T + V + + +
Sbjct: 208 ------DRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVI 261
Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT 225
L + PE + SI+ + + + SL++K+ +E +T YG TET+ C
Sbjct: 262 TLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKW-----KEKVTYINAYGPTETTICA 316
Query: 226 LYTR-------------------------FAIPEAKLGSTGQL------VMLGYLKNEEA 254
+ +G G+L + GY K E
Sbjct: 317 TTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPEL 376
Query: 255 TKET------VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
T + V E TGD A + DG + R +K++G++V
Sbjct: 377 TSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL 426
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 85.8 bits (211), Expect = 3e-19
Identities = 60/319 (18%), Positives = 113/319 (35%), Gaps = 40/319 (12%)
Query: 7 LLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPY 66
+ ++ + LP + IV G + F L +LP++ +D+A L
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEE-------FLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 67 SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
S G+TG+ K + +H++ +L++ V ++H + + + +
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALP------MAHNYPLSSPGV 243
Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
V+ G ++ P +P+ + + K TI +VP L + + + L+S++ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303
Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------- 233
G A + + K + I
Sbjct: 304 QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDES 363
Query: 234 --------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYF 279
+ K G TG L + GY K EE + +G+ TGD+ DGY
Sbjct: 364 RVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYI 423
Query: 280 YIVDRTKELIKVKGNQVAP 298
+ R K+ I G +VA
Sbjct: 424 VVEGRAKDQINRGGEKVAA 442
>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 193
Score = 27.2 bits (60), Expect = 2.4
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 107 QETVLSVLPFFHIYGFNGILNVVMMYG------MHMITIPKFTPETYIECVVKYKPTILF 160
+ + + + + N + M I +P E + + +
Sbjct: 121 KTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQ 180
Query: 161 VVPSLL 166
+ SL+
Sbjct: 181 LKSSLV 186
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 26.6 bits (57), Expect = 3.0
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 2/124 (1%)
Query: 13 KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
IG P ++ T ++GG+ K T + T
Sbjct: 4 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTE 63
Query: 73 VPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMY 132
+ KL+ + + +Q L LPF + +
Sbjct: 64 IAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKR--ELSQAA 121
Query: 133 GMHM 136
G+
Sbjct: 122 GVLN 125
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 226
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 173 PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
+T + I G P + L FK ++ R DI
Sbjct: 3 LELTEDMEKEISNA-LGHGPQDEILSSAFKLRITRGDI 39
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 25.7 bits (56), Expect = 7.6
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 14/114 (12%)
Query: 132 YGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV-----TPEHLASIREV 186
+ I+ KF E Y +V+ I + S F + PEHL IR V
Sbjct: 97 FNQRRISSAKFLGELYNYRMVESA-VIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLV 155
Query: 187 -----TCGAA---PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI 232
TCG ++K +D F QR + T+ P + + I
Sbjct: 156 CTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMI 209
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 25.5 bits (55), Expect = 8.0
Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 11/215 (5%)
Query: 11 GTKIGATLPNFRGTIVVG-GEHDKSKNIFGFKQLVTSQPPDF------QLPKISPNDLAM 63
G +GAT PNF G+ + K I ++ S P DF +L ++
Sbjct: 1 GYHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 60
Query: 64 LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
L + G K SH+ +++ + D S+E + + L +
Sbjct: 61 LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRE-LANKLKIMDEQEKD 119
Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL--LLFLASHPAVTPEHLA 181
+ + I+ P+ + + ++ L L + P TP +
Sbjct: 120 ITGLPLTCRCLFFIS-PEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWN 178
Query: 182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
+ + FK ++ + ++ ++ Y
Sbjct: 179 EGDKCCVIPTLQDDEISKHFKNEITKVEMPSKKKY 213
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 124
Score = 24.9 bits (54), Expect = 9.0
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Query: 240 TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
TG+++M+ Y+ N EA + T L TG Y+ ++ + +KG
Sbjct: 26 TGEVLMVAYM-NREALRRT------LETGTAHYW---------STSRGKLWLKGES 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,256,372
Number of extensions: 58411
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 24
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)