BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12108
(665 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RAU|A Chain A, Crystal Structure Of The Hd-Ptp Bro1 Domain
pdb|3RAU|B Chain B, Crystal Structure Of The Hd-Ptp Bro1 Domain
Length = 363
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 110/196 (56%), Gaps = 4/196 (2%)
Query: 109 FSKEPVMPMIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQ-AMRTPN 167
F P MPMI L LKE + + K F+L++Y E+ AY + + + +RQ A+R P
Sbjct: 3 FEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVP- 61
Query: 168 RDNSGISLLFQYYNQLYFIERRF-FPPDRSLGIYFEYDSL-TGVPSCQRTIAFEKACVLF 225
RD G S+L +Y QL++++ R + + + + +G I +E+AC+L+
Sbjct: 62 RDFEGCSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSVAHEDIKYEQACILY 121
Query: 226 NMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDMLIQ 285
N+ A+++ + A R++ G+ + +F AAG F YL+E+F A S+D+ +L + +
Sbjct: 122 NLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVN 181
Query: 286 LMLAQARECLFQKLQL 301
LML QA+ECL +K L
Sbjct: 182 LMLGQAQECLLEKSML 197
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 17/198 (8%)
Query: 118 IPLGLKETKEIDVREPFKDFILEHY---SEDGTAYEDSVSEFMDMRQAM--RTPNRDNSG 172
I + LK+T E+D+ +P FI + Y E+ Y + E +R+A R ++
Sbjct: 12 ISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGA 71
Query: 173 ISLLFQYYNQLYFIERRFFPPDRSLGIYFEY------DSLTG--VPSCQRTIAFEKACVL 224
+ L +YY+Q+ IE +F + + + F + SL G V ++ +EK+CVL
Sbjct: 72 LETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVL 131
Query: 225 FNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA----PSMDLGPPML 280
FN AA+ +Q+AA+Q+ GL A ++ A+G F +++E +A P++D+ P +
Sbjct: 132 FNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTV 191
Query: 281 DMLIQLMLAQARECLFQK 298
L +MLAQA+E F K
Sbjct: 192 GTLSLIMLAQAQEVFFLK 209
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 17/198 (8%)
Query: 118 IPLGLKETKEIDVREPFKDFILEHY---SEDGTAYEDSVSEFMDMRQAM--RTPNRDNSG 172
I + LK+T E+D+ +P FI + Y E+ Y + E +R+A R ++
Sbjct: 11 ISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGA 70
Query: 173 ISLLFQYYNQLYFIERRFFPPDRSLGIYFEY------DSLTG--VPSCQRTIAFEKACVL 224
+ L +YY+Q+ IE +F + + + F + SL G V ++ +EK+CVL
Sbjct: 71 LETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVL 130
Query: 225 FNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA----PSMDLGPPML 280
FN AA+ +Q+AA+Q+ GL A ++ A+G F +++E +A P++D+ P +
Sbjct: 131 FNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTV 190
Query: 281 DMLIQLMLAQARECLFQK 298
L +MLAQA+E F K
Sbjct: 191 GTLSLIMLAQAQEVFFLK 208
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL
Late Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 17/198 (8%)
Query: 118 IPLGLKETKEIDVREPFKDFILEHY---SEDGTAYEDSVSEFMDMRQAM--RTPNRDNSG 172
I + LK+T E+D+ +P FI + Y E+ Y + E +R+A R ++
Sbjct: 4 ISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGA 63
Query: 173 ISLLFQYYNQLYFIERRFFPPDRSLGIYFEY------DSLTG--VPSCQRTIAFEKACVL 224
+ L +YY+Q+ IE +F + + + F + SL G V ++ +EK+CVL
Sbjct: 64 LETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVL 123
Query: 225 FNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA----PSMDLGPPML 280
FN AA+ +Q+AA+Q+ GL A ++ A+G F +++E +A P++D+ P +
Sbjct: 124 FNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTV 183
Query: 281 DMLIQLMLAQARECLFQK 298
L +MLAQA+E F K
Sbjct: 184 GTLSLIMLAQAQEVFFLK 201
>pdb|2OEW|A Chain A, Structure Of AlixAIP1 BRO1 DOMAIN
pdb|3C3O|A Chain A, Alix Bro1-Domain:chmip4a Co-Crystal Structure
pdb|3C3Q|A Chain A, Alix Bro1-domain:chmip4b Co-crystal Structure
pdb|3C3R|A Chain A, Alix Bro1 Chmp4c Complex
Length = 380
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 104/199 (52%), Gaps = 17/199 (8%)
Query: 117 MIPLGLKETKEIDVREPFKDFILEHY---SEDGTAYEDSVSEFMDMRQAM--RTPNRDNS 171
I + LK+T E+D+ +P FI + Y E+ Y + E +R+A R ++
Sbjct: 25 FISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEG 84
Query: 172 GISLLFQYYNQLYFIERRFFPPDRSLGIYFEY------DSLTG--VPSCQRTIAFEKACV 223
+ L +YY+Q+ IE +F + + + F + SL G V ++ +EK+CV
Sbjct: 85 ALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCV 144
Query: 224 LFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA----PSMDLGPPM 279
LFN AA+ +Q+AA+Q+ GL A ++ A+G F +++E +A P++D+ P
Sbjct: 145 LFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDT 204
Query: 280 LDMLIQLMLAQARECLFQK 298
+ L +MLAQA+E F K
Sbjct: 205 VGTLSLIMLAQAQEVFFLK 223
>pdb|1ZB1|A Chain A, Structure Basis For Endosomal Targeting By The Bro1 Domain
pdb|1ZB1|B Chain B, Structure Basis For Endosomal Targeting By The Bro1 Domain
Length = 392
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Query: 117 MIPLGLKETKEIDVREPFKDFILEHY--SEDGTAY-EDSVSEFMDMRQAMRTPNRDNSGI 173
+ L LK+T+++D ++ ++ + Y S+ T Y E + SE +R +S
Sbjct: 10 LFDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELAPSSLS 69
Query: 174 SLLFQYYNQLYFIERRFFPPDRSLGIYF-----EYDSL-TGVPSCQRTIAFEKACVLFNM 227
+YY+ L + R L + F EY S G+ Q T+AFEK+C LFN+
Sbjct: 70 EQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNI 129
Query: 228 AAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDMLIQLM 287
A I+TQ+A + + ++ N +A F YL ENF N+PS+DL L +
Sbjct: 130 AVIFTQIAREN---INEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANIC 186
Query: 288 LAQARECLFQKL 299
A+A+E KL
Sbjct: 187 HAEAQELFVLKL 198
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
RS+++ R G+GF++ G AP +++ V GS A F G++ GD I+A+ + +VK + H
Sbjct: 4 RSVEVARGR---AGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASH 60
Query: 580 EEVVQLIKDAGKC 592
E+VV+LI GKC
Sbjct: 61 EDVVKLI---GKC 70
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
W+ PR I + GF++RG+ PV V +D A G K+GD+IV+I D K
Sbjct: 13 WSPPRGIHF---TVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCK 69
Query: 576 WSPHEEVVQLIKD-AGKCLSLKLVT 599
W EV++L+K G+ + +K+V+
Sbjct: 70 WLTVSEVMKLLKSFGGEEVEMKVVS 94
>pdb|2VSV|A Chain A, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
pdb|2VSV|B Chain B, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
Length = 109
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 517 TAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
+ PRSI R + GF++RG+APV V +D A G ++GD+IV+I D KW
Sbjct: 22 SMPRSI---RFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKW 78
Query: 577 SPHEEVVQLIKDAGK 591
EV++L+K G+
Sbjct: 79 LTLSEVMKLLKSFGE 93
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592
GFGF+V GD V+V SV G A G+K+GD I+ + V S H EVV+LIK +G
Sbjct: 20 GFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAY 78
Query: 593 LSLKLV 598
++L L+
Sbjct: 79 VALTLL 84
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 519 PRSIQLQRANNSDTGFGFSVR------GDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
PR + L++ GFGF +R G + VD G A+ GM+ GD +VA+
Sbjct: 4 PRCLHLEKGPQ---GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGE 60
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
V+ HEE V I+ G C+SL +V P
Sbjct: 61 SVEGLGHEETVSRIQGQGSCVSLTVVDP 88
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 514 HHWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
H R + +Q+ D GFG +V GD PV V SV A G++ GD I+ +
Sbjct: 3 HMGLVQRCVIIQK---DDNGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTL 59
Query: 574 VKWSPHEEVVQLIK 587
V S H EVV+LIK
Sbjct: 60 VTHSNHLEVVKLIK 73
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 518 APRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
+PR + +++ +N G+GF +R I+ ++ GS A+ G+K+ D +VA+ + V
Sbjct: 2 SPRVVVIKKGSN---GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSV 58
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ H+ VV++I+ G +L
Sbjct: 59 EALDHDGVVEMIRKGGDQTTL 79
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPV-------------IVASVDSGSLAQFGGMKDG 563
+++ LQ+ ++ GFGF +RG P+ + SVD G +A G++ G
Sbjct: 9 KTVLLQKKDSE--GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 66
Query: 564 DFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
DF++ + ++V H +VV +I+ G L +K+V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAP----VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
R + L+RA + G GFS+RG + + V+ V+ GSLA+ G++ GD I+ + D+ +
Sbjct: 10 RLVSLRRAK-AHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLA 68
Query: 576 WSPHEEVVQLIKDAGK 591
H E V+ +K + K
Sbjct: 69 RVTHAEAVKALKGSKK 84
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
PR + +++ +N G+GF +R I+ ++ GS A+ G+K+ D +VA+ + V+
Sbjct: 6 PRVVVIKKGSN---GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVE 62
Query: 576 WSPHEEVVQLIKDAGKCLSL 595
H+ VV++I+ G +L
Sbjct: 63 ALDHDGVVEMIRKGGDQTTL 82
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPV-------------IVASVDSGSLAQFGGMKDG 563
+++ LQ+ ++ GFGF +RG P+ + SVD G +A G++ G
Sbjct: 9 KTVLLQKKDSE--GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 66
Query: 564 DFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
DF++ + ++V H +VV +I+ G L +K+V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPV-------------IVASVDSGSLAQFGGMKDG 563
+++ LQ+ ++ GFGF +RG P+ + SVD G +A G++ G
Sbjct: 29 KTVLLQKKDSE--GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 86
Query: 564 DFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
DF++ + ++V H +VV +I+ G L +K+V
Sbjct: 87 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
R I + R + GFGF++ D+PV V +VDSG A+ G++ D ++ + +R V+ H
Sbjct: 5 RQITIPRGKD---GFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE---H 58
Query: 580 EEVVQLIKDAGKCLS 594
+ V+L + C S
Sbjct: 59 WKCVELAHEIRSCPS 73
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 517 TAPRSIQLQRANNSDTGFGF---SVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
+ P+ +L + N G+GF ++RG + V G A G++D D I+ + +
Sbjct: 6 SGPKLCRLAKGEN---GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVN 62
Query: 574 VKWSPHEEVVQLIKDAGKCLSL 595
V P+E+VV I+ +GK ++L
Sbjct: 63 VLDEPYEKVVDRIQSSGKNVTL 84
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 523 QLQRANNSDTGFGF---SVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
+L R + G+GF ++RG + V G A G++D D I+ + +V P+
Sbjct: 5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPY 64
Query: 580 EEVVQLIKDAGKCLSL 595
E+VV I+ +GK ++L
Sbjct: 65 EKVVDRIQSSGKNVTL 80
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 523 QLQRANNSDTGFGF---SVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
+L R + G+GF ++RG + V G A G++D D I+ + +V P+
Sbjct: 5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPY 64
Query: 580 EEVVQLIKDAGKCLSL 595
E+VV I+ +GK ++L
Sbjct: 65 EKVVDRIQSSGKNVTL 80
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 517 TAPRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
++ R + +++ +N G+GF +R I+ ++ GS A+ G+K+ D +VA+ +
Sbjct: 5 SSGRVVVIKKGSN---GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS 61
Query: 574 VKWSPHEEVVQLIKDAGKCLSL 595
V+ H+ VV++I+ G +L
Sbjct: 62 VEALDHDGVVEMIRKGGDQTTL 83
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 19/101 (18%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRGD---------------APVI-VASVDSGSLAQFG 558
H +PR +++ + S++G+GF+VRG AP+ V++V G A
Sbjct: 3 HGGSPRVVRIVK---SESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA 59
Query: 559 GMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
G++ GD I+ + +V+ + H++VV LI+ K L L +++
Sbjct: 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 19/101 (18%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRGD---------------APVI-VASVDSGSLAQFG 558
H +PR +++ + S++G+GF+VRG AP+ V++V G A
Sbjct: 3 HGGSPRVVRIVK---SESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA 59
Query: 559 GMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
G++ GD I+ + +V+ + H++VV LI+ K L L +++
Sbjct: 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 19/101 (18%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRGD---------------APVI-VASVDSGSLAQFG 558
H +PR +++ + S++G+GF+VRG AP+ V++V G A
Sbjct: 3 HGGSPRVVRIVK---SESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA 59
Query: 559 GMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
G++ GD I+ + +V+ + H++VV LI+ K L L +++
Sbjct: 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 530 SDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQ 584
+D G GF++ G ++P+ ++ V G +A + GG+K GD ++++ V+ HE+ V+
Sbjct: 14 TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVE 73
Query: 585 LIKDAGKCLSLKLV 598
L+K A S+KLV
Sbjct: 74 LLKAAQG--SVKLV 85
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592
GFGF++ D+PV V +VDSG A+ G++ D ++ + +R V+ H + V+L + C
Sbjct: 27 GFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE---HWKCVELAHEIRSC 83
Query: 593 LS 594
S
Sbjct: 84 PS 85
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 520 RSIQLQRANNSDTGFGFSV-------RGDAPVIVASV-DSGSLAQFGGMKDGDFIVAIGD 571
+SI L+R + G GFS+ GD P+ V +V G+ ++ G +K GD I+A+
Sbjct: 27 KSITLERGPD---GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG 83
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
+ ++ HEE V ++K ++L +++
Sbjct: 84 QSLEGVTHEEAVAILKRTKGTVTLMVLS 111
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 514 HHWTAPR------SIQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQF 557
HH PR I L+R N +G GFS+ G D P I + + G+ AQ
Sbjct: 2 HHHHHPRGSMEYEEITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQD 58
Query: 558 GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSL 595
G ++ D I+ + + DV+ H V+ +K+AG + L
Sbjct: 59 GRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL 96
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 543 PVIVASVDSGSLAQ-FGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
P+I++S+ G LA+ G + GD I+AI +K P E + L++ AG+ ++LK+
Sbjct: 31 PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI 86
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--DAP--------VIVASVDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + G+ AQ G ++ D I+ + +
Sbjct: 5 ITLERGN---SGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNE 61
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H + V+ +K+AG + L
Sbjct: 62 ADVRDVTHSKAVEALKEAGSIVRL 85
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQFGGMKDGDFIVAIG 570
+ + L++ +N GF G + VA V S AQ G+ GD I ++
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLK 596
+V+ H E+V +IK +G L L+
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRLE 91
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 532 TGFGFSVRG---------DAPVIVASV-DSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEE 581
+G GF++ G D+ + V+ + ++G+ A G +++GD I+++ +D+K H++
Sbjct: 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 87
Query: 582 VVQLIKDAGKCLSLKL 597
V L ++AG +SL++
Sbjct: 88 AVDLFRNAGYAVSLRV 103
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
P + L R + GFSV+ I+ S+ G +A+ GG++ G I+ I + V +P
Sbjct: 92 PVTTVLIRRPDLRYQLGFSVQNG---IICSLMRGGIAERGGVRVGHRIIEINGQSVVATP 148
Query: 579 HEEVVQLIKDA 589
HE++V ++ +A
Sbjct: 149 HEKIVHILSNA 159
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
P + L R + GFSV+ I+ S+ G +A+ GG++ G I+ I + V +P
Sbjct: 2 PVTTVLIRRPDLRYQLGFSVQNG---IICSLMRGGIAERGGVRVGHRIIEINGQSVVATP 58
Query: 579 HEEVVQLIKDA 589
HE++V ++ +A
Sbjct: 59 HEKIVHILSNA 69
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQFGGMKDGDFIVAIG 570
+ + L++ +N GF G + VA V S AQ G+ GD I ++
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPAQLAGLTPGDTIASVN 65
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLK 596
+V+ H E+V +IK +G L L+
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRLE 91
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 534 FGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
GFSV+ I+ S+ G +A+ GG++ G I+ I + V +PHE++V ++ +A
Sbjct: 26 LGFSVQNG---IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 78
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--DAP--------VIVASVDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + G+ AQ G ++ D I+ + +
Sbjct: 15 ITLERGN---SGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNE 71
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H + V+ +K+AG + L
Sbjct: 72 VDVRDVTHSKAVEALKEAGSIVRL 95
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + + G+ AQ G ++ D I+ + +
Sbjct: 6 ITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 62
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H V+ +K+AG + L
Sbjct: 63 VDVREVTHSAAVEALKEAGSIVRL 86
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + + G+ AQ G ++ D I+ + +
Sbjct: 5 ITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H V+ +K+AG + L
Sbjct: 62 VDVREVTHSAAVEALKEAGSIVRL 85
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + + G+ AQ G ++ D I+ + +
Sbjct: 5 ITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H V+ +K+AG + L
Sbjct: 62 VDVREVTHSAAVEALKEAGSIVRL 85
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + + G+ AQ G ++ D I+ + +
Sbjct: 9 ITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 65
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H V+ +K+AG + L
Sbjct: 66 VDVREVTHSAAVEALKEAGSIVRL 89
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + + G+ AQ G ++ D I+ + +
Sbjct: 6 ITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 62
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H V+ +K+AG + L
Sbjct: 63 VDVREVTHSAAVEALKEAGSIVRL 86
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 532 TGFGFSVRG---------DAPVIVASV-DSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEE 581
+G GF++ G D+ + V+ + ++G+ A G +++GD I+++ +D+K H++
Sbjct: 20 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 79
Query: 582 VVQLIKDAGKCLSLKL 597
V L ++AG +SL++
Sbjct: 80 AVDLFRNAGYAVSLRV 95
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 521 SIQLQRANNSDTGFGFSVR------GDAPV-----IVASVDSGSLAQFGGMKDGDFIVAI 569
S+Q ++S +GF++R GD+ + IV +V+ GS A G+K GD I I
Sbjct: 1 SMQPIVIHSSGKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHI 60
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
V H EV++L+ +G +S+ TP
Sbjct: 61 NGEPVHGLVHTEVIELLLKSGNKVSIT-TTP 90
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 532 TGFGFSVRG---------DAPVIVASV-DSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEE 581
+G GF++ G D+ + V+ + ++G+ A G +++GD I+++ +D+K H++
Sbjct: 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 77
Query: 582 VVQLIKDAGKCLSLKL 597
V L ++AG +SL++
Sbjct: 78 AVDLFRNAGYAVSLRV 93
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVAS--VDSGSLAQFGGMKDGDFIVAIGD 571
I L+R N +G GFS+ G D P I + + G+ AQ G ++ D I+ + +
Sbjct: 63 ITLERGN---SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 119
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSL 595
DV+ H V+ +K+AG + L
Sbjct: 120 VDVREVTHSAAVEALKEAGSIVRL 143
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDA---PVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I + R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 308 PRRIVIHRGS---TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 365 RNASHEQAAIALKNAGQTVTI 385
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQFGGMKDGDFIVAIG 570
+ + L++ +N GF G + V V S AQ G+ GD I ++
Sbjct: 6 KVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASVN 65
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLK 596
+V+ H E+V +IK +G L L+
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRLE 91
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 534 FGFSVRG----DAPVIVASVDSGSLAQF--GGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
FGF+V+G PVIV+ V G+ A + +GD +V I RD+ H++VV IK
Sbjct: 18 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 77
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 534 FGFSVRG----DAPVIVASVDSGSLAQF--GGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
FGF+V+G PVIV+ V G+ A + +GD +V I RD+ H++VV IK
Sbjct: 29 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 534 FGFSVRG----DAPVIVASVDSGSLAQF--GGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
FGF+V+G PVIV+ V G+ A + +GD +V I RD+ H++VV IK
Sbjct: 31 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 529 NSDTGFGFSVRG--DAPVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHEEVVQL 585
N +G GF + G + V+V ++ G LA G ++ GD I+ IG +V+ E+V Q+
Sbjct: 23 NDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQV 82
Query: 586 IKDAGKCLSL 595
+++ G + +
Sbjct: 83 LRNCGNSVRM 92
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 549 VDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+D + +K GD I+A+ + + PH ++V+LIKDAG ++L+++
Sbjct: 51 IDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRII 100
>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|B Chain B, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|C Chain C, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|D Chain D, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|E Chain E, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|F Chain F, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|G Chain G, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|H Chain H, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
Length = 112
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 533 GFGFSVRG---DAPV-------------IVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
GFGF +RG + P+ + SVD +A G++ GDF++ + +V
Sbjct: 23 GFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWRAGLRTGDFLIEVNGVNVVK 82
Query: 577 SPHEEVVQLIKDAGKCLSLKLVT 599
H++VV LI+ G L +K+V+
Sbjct: 83 VGHKQVVGLIRQGGNRLVMKVVS 105
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I + R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 15 PRRIVIHRGS---TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 72 RNASHEQAAIALKNAGQTVTI 92
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I + R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 7 PRRIVIHRGS---TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 63
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 64 RNASHEQAAIALKNAGQTVTI 84
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I + R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 12 PRRIVIHRGS---TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 69 RNASHEQAAIALKNAGQTVTI 89
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim), Ms0793
From Homo Sapiens
Length = 90
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 522 IQLQRANNSDTGFGFSVRGDAP-VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHE 580
I + + FGF+++ D P + VASV++GS A+F ++ D I+AI + ++ +
Sbjct: 7 ISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSK 66
Query: 581 E 581
E
Sbjct: 67 E 67
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I + R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 15 PRRIVIHRGS---TGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 72 RNASHEQAAIALKNAGQTVTI 92
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 533 GFGFSVRGD----APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
G G S++G P++++ + G A Q ++ GD I+++ D++ + H++ VQ +K
Sbjct: 16 GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Query: 588 DAGKCLSLKL 597
AGK + L++
Sbjct: 76 RAGKEVLLEV 85
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 483 FQLTLTPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSD---TGFGFSVR 539
+L + P + LP+ D + L P+ T RS +L+ G G SVR
Sbjct: 46 LKLVINEP--SRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVR 103
Query: 540 GD----APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSL 595
G + ++ + G A G++ GD IV I + HEEV+ LI+ K +S+
Sbjct: 104 GGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTE-KTVSI 162
Query: 596 KL 597
K+
Sbjct: 163 KV 164
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR + L + + TG GF++ G + V+ + +G A G ++ GD I+++ D+
Sbjct: 4 PRKVVLHKGS---TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDL 60
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K AG+ +++
Sbjct: 61 RGASHEQAAAALKGAGQTVTI 81
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
R + +++A+ G G S++G P++++ + G A Q + GD I+++ D+
Sbjct: 2 RRVTVRKADAG--GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 59
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H+E VQ +K GK + L++
Sbjct: 60 SSATHDEAVQALKKTGKEVVLEV 82
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
R + +++A+ G G S++G P++++ + G A Q + GD I+++ D+
Sbjct: 2 RRVTVRKADAG--GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 59
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H+E VQ +K GK + L++
Sbjct: 60 SSATHDEAVQALKKTGKEVVLEV 82
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
R + +++A+ G G S++G P++++ + G A Q + GD I+++ D+
Sbjct: 6 RRVTVRKADAG--GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 63
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H+E VQ +K GK + L++
Sbjct: 64 SSATHDEAVQALKKTGKEVVLEV 86
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 534 FGFSVRGDAP----VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
G ++RG A + + VD GS A+ G+K GD I+ + R H+E V+L+K +
Sbjct: 34 LGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS 93
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 533 GFGFSVRGDAP-----VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
GFGFS+RG ++ + G + G M+ GD I+ I + H ++LIK
Sbjct: 23 GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK 82
Query: 588 DAGKCLSLKL 597
G+ + L L
Sbjct: 83 SGGRRVRLLL 92
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRGDAPVI-------------VASVDSGSLA-QFGGM 560
HW PR +++ R N G S+ G VI + V S A + +
Sbjct: 12 HWGPPRIVEIFREPN--VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNAL 69
Query: 561 KDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590
K GD I+ + D++ + H E V+ IK+AG
Sbjct: 70 KTGDKILEVSGVDLQNASHSEAVEAIKNAG 99
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 522 IQLQRANNSDTGFGFSVR------GDAPV-----IVASVDSGSLAQFGGMKDGDFIVAIG 570
I +QR S +GF++R GD V IV V+ G AQ G+ GD I +
Sbjct: 9 ITIQR---SGKKYGFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLITHVN 65
Query: 571 DRDVKWSPHEEVVQLIKDAG 590
V H EVV+LI +G
Sbjct: 66 GEPVHGMVHPEVVELILKSG 85
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I L + + TG GF++ G + V+ + +G A G ++ GD I+++ ++
Sbjct: 16 PRKIILHKGS---TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNL 72
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K AG+ +++
Sbjct: 73 RNATHEQAAAALKRAGQSVTI 93
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR I L + + TG GF++ G + V+ + +G A G ++ GD I+++ ++
Sbjct: 13 PRKIILHKGS---TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNL 69
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K AG+ +++
Sbjct: 70 RNATHEQAAAALKRAGQSVTI 90
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 525 QRANNSDTGFGFSVRGDAP--VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEV 582
+R + G R D P I+ ++ G AQ G + D ++AI D+K+ E
Sbjct: 11 KRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELA 70
Query: 583 VQLIKDAGKCLSLKLVTP 600
Q+I+ +G+ ++L + P
Sbjct: 71 AQIIQASGERVNLTIARP 88
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 534 FGFSVR------GDAPV-----IVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEV 582
+GF++R GD+ V +V V+ G A G++ GD I + V H EV
Sbjct: 17 YGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEV 76
Query: 583 VQLIKDAGKCLSLKLVTPM 601
V+LI +G +++ TP+
Sbjct: 77 VELILKSGNKVAIS-TTPL 94
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 204 DSLTG-VPSCQRTIAFEKACVLFNMAAIYTQMA---AKQDRLTSTGLDQAVDNFLRAAGT 259
D+L G VPS Q+ FE + FN+A YT+ A A ++ +T + + AAG
Sbjct: 100 DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGI 159
Query: 260 FTYLQEN 266
F +L+E+
Sbjct: 160 FKHLKES 166
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 545 IVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
I+ S+ G +A+ GG++ G I+ I + V +PH +++L+ +A
Sbjct: 30 IICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEA 74
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 204 DSLTG-VPSCQRTIAFEKACVLFNMAAIYTQMA---AKQDRLTSTGLDQAVDNFLRAAGT 259
D+L G VPS Q+ FE + FN+A YT+ A A ++ +T + + AAG
Sbjct: 93 DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGI 152
Query: 260 FTYLQEN 266
F +L+E+
Sbjct: 153 FKHLKES 159
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 204 DSLTG-VPSCQRTIAFEKACVLFNMAAIYTQMA---AKQDRLTSTGLDQAVDNFLRAAGT 259
D+L G VPS Q+ FE + FN+A YT+ A A ++ +T + + AAG
Sbjct: 94 DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGI 153
Query: 260 FTYLQEN 266
F +L+E+
Sbjct: 154 FKHLKES 160
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 549 VDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
VDSG A+ GG++ D I+ + RD+ + H++ V+ K A
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA 89
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 204 DSLTG-VPSCQRTIAFEKACVLFNMAAIYTQMA---AKQDRLTSTGLDQAVDNFLRAAGT 259
D+L G VPS Q+ FE + FN+A YT+ A A ++ +T + + AAG
Sbjct: 93 DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGI 152
Query: 260 FTYLQEN 266
F +L+E+
Sbjct: 153 FKHLKES 159
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 533 GFGFSVRG---------DAPVIVASV-DSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEV 582
G GFS+ G D + V + D G+ + G ++ GD ++ + + ++ HEE
Sbjct: 36 GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95
Query: 583 VQLIKDAGKCLSLKLVTP 600
V ++K+ + + LK+ P
Sbjct: 96 VAILKNTSEVVYLKVGKP 113
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 204 DSLTG-VPSCQRTIAFEKACVLFNMAAIYTQMA---AKQDRLTSTGLDQAVDNFLRAAGT 259
D+L G VPS Q+ FE + FN+A YT+ A A ++ +T + + AAG
Sbjct: 96 DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGI 155
Query: 260 FTYLQEN 266
F +L+E+
Sbjct: 156 FKHLKES 162
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDA--------PVIVASVDSGSLA-QFGGMKDGDFIVAIG 570
R++++ +T FGF +RG A PV++ SV G A + G +K GD ++++
Sbjct: 3 RTVEVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 571 DRDVKWSPHEEVVQLIKDAGK 591
+ + H E + ++K G+
Sbjct: 62 GIRLLGTTHAEAMSILKQCGQ 82
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 492 FAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQ------------LQRANNSDTGFGFSVR 539
F H + L K +G + ++ P SIQ L + N+ FGF +R
Sbjct: 69 FRHDEIISLLKNVGERVVLEVEYE-LPPVSIQGSSVMFRTVEVTLHKEGNT---FGFVIR 124
Query: 540 GDA--------PVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590
G A PV++ V G A + G +K GD ++++ + + H E + ++K G
Sbjct: 125 GGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 184
Query: 591 KCLSL 595
+ +L
Sbjct: 185 QEATL 189
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2 (Magi-2)
Length = 96
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD 588
GFGF++ D+P + G+ +GD IV I ++V+ H EVV ++KD
Sbjct: 22 GFGFTI-ADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKD 76
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRGD----APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
R + +++A+ G G S++G P++++ + G A Q + GD I+++ D+
Sbjct: 79 RRVTVRKADAG--GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 136
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H+E VQ +K GK + L++
Sbjct: 137 SSATHDEAVQALKKTGKEVVLEV 159
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
PR L++ G+GF++ D + SVD GS A G++ D ++ + ++V+
Sbjct: 5 PRLCHLRKGPQ---GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 61
Query: 576 WSPHEEVVQLIK 587
H EVV IK
Sbjct: 62 GLRHAEVVASIK 73
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 531 DTGFGFSVRGD----APVIVAS-VDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQL 585
+TGFGF + G P+ + V G+ G ++ GD ++++ V H+ VVQL
Sbjct: 12 ETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQL 71
Query: 586 IKDAGK 591
++ A K
Sbjct: 72 MQQAAK 77
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 425 HEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQ 484
H ES RIY +C+E KQ L V + A++E D + ++P
Sbjct: 117 HPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILISTNGLSPR---- 172
Query: 485 LTLTPPDFAHL---PVEDLFKQLGPVAIFSA 512
F L + +LF Q G +A+ A
Sbjct: 173 -------FGALVRDEIRNLFTQXGDLALEDA 196
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 517 TAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
+ P S+ L+ + +GF + G AP+ ++ V +GS A + GD I AI
Sbjct: 1 SMPHSVTLR----GPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGE 56
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ H E IK L+L + P
Sbjct: 57 STELMTHLEAQNRIKGCHDHLTLSVSRP 84
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 519 PRSIQLQRANNSDTGFGFS---VRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
PR L + S +GFS V+G V + + +A G+ D ++ + +V+
Sbjct: 9 PRLCYLVKEGGS---YGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE 65
Query: 576 WSPHEEVVQLIKDAGKCLSLKLV 598
+ HEEVV+ +K +G + LV
Sbjct: 66 DASHEEVVEKVKKSGSRVMFLLV 88
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 534 FGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
+GF + G P+IV V A+ ++ GD IVAI + + H E I+ +
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 590 GKCLSLKL 597
L L+L
Sbjct: 78 ASPLRLQL 85
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR + L R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 8 PRKVVLHRGS---TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 64
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 65 RAASHEQAAAALKNAGQAVTI 85
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVR---GDAPVIVAS-VDSGSLAQFGGMKDGDFIVAIG 570
H P I ++ G GF V+ PVI++ + G+ Q G ++ GD I+A+
Sbjct: 3 HMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 62
Query: 571 DR---DVKWSPHEEVVQLI 586
DR D+ + EV++ I
Sbjct: 63 DRPLVDLSYDSALEVLRGI 81
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 534 FGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
+GF ++G + P+ ++ + GS A + GD +VAI + H E IK A
Sbjct: 20 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 79
Query: 590 GKCLSLKL 597
LSL L
Sbjct: 80 SYNLSLTL 87
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 533 GFGFSVRGDAP-----VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
GFGF++ D+P + VDS + G+K+GD IV + ++V+ H +VV ++
Sbjct: 15 GFGFTI-ADSPGGGGQRVKQIVDS---PRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLV 70
Query: 588 DAGK 591
++ K
Sbjct: 71 ESPK 74
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
+ I + AN S FG ++ + V+V ++ G L GG KDGD I + D W H
Sbjct: 89 KGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLP--GGAKDGDMI-RVDDSPNVWVDH 145
Query: 580 EEV 582
E+
Sbjct: 146 NEL 148
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGG-MKDGDFIVAIGDRDV 574
PR + L R + TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 5 PRKVVLHRGS---TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 61
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 62 RAASHEQAAAALKNAGQAVTI 82
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
+ I + AN S FG ++ + V+V ++ G L GG KDGD I + D W H
Sbjct: 89 KGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLP--GGAKDGDMI-RVDDSPNVWVDH 145
Query: 580 EEV 582
E+
Sbjct: 146 NEL 148
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 534 FGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
+GF ++G + P+ ++ + GS A + GD +VAI + H E IK A
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 590 GKCLSLKL 597
LSL L
Sbjct: 73 SYNLSLTL 80
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp
Length = 217
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 243 STGLDQAVDNFLRAAGTFTYLQENFT----NAPSMDLGPPMLDMLIQLMLAQARECLFQK 298
S G+ VD + + FT +ENF+ P + L P L + +QL LA A + +
Sbjct: 91 SQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGRAR 150
Query: 299 LQLQTTEKCDFQ 310
+L+ E FQ
Sbjct: 151 GELERYENGAFQ 162
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 491 DFAHLPVEDLFKQ----LG--PVAIFSA----KHHWTAPRSIQLQRANNSDTGFGFSVRG 540
D+ L + D F Q LG PV + S +HWT ++ ++QR + G + G
Sbjct: 73 DYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITG 132
Query: 541 DAPVIVASVDSGSLAQFGGMK 561
+P+ +D+ GGM+
Sbjct: 133 SSPLGATQLDTDGALWLGGME 153
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 521 SIQLQRANNSDTGF------GFSVRGDAP-VIVASVDSGSLAQFGG-MKDGDFIVAIGDR 572
+++L R + G G S G+A + V SV GS A G ++ D IVA+
Sbjct: 18 NVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV 77
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLV 598
+++ + +VV+++++AG+ + L LV
Sbjct: 78 NIQGFANHDVVEVLRNAGQVVHLTLV 103
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 533 GFGFSVRGD----APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
G G S+ G P++++ + G A + GG+ GD I+A+ +++ + H+E V ++
Sbjct: 15 GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 73
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 533 GFGFSVRGD----APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
G G S+ G P++++ + G A + GG+ GD I+A+ +++ + H+E V ++
Sbjct: 40 GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 533 GFGFSVRGD----APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
G G S+ G P++++ + G A + GG+ GD I+A+ +++ + H+E V ++
Sbjct: 22 GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 80
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 491 DFAHLPVEDLFKQ----LG--PVAIFSA----KHHWTAPRSIQLQRANNSDTGFGFSVRG 540
D+ L + D F Q LG PV + S +HWT ++ ++QR + G + G
Sbjct: 67 DYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITG 126
Query: 541 DAPVIVASVDSGSLAQFGGMK 561
+P+ +D+ GGM+
Sbjct: 127 SSPLGATQLDTDGALWLGGME 147
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 491 DFAHLPVEDLFKQ----LG--PVAIFSA----KHHWTAPRSIQLQRANNSDTGFGFSVRG 540
D+ L + D F Q LG PV + S +HWT ++ ++QR + G + G
Sbjct: 76 DYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITG 135
Query: 541 DAPVIVASVDSGSLAQFGGMK 561
+P+ +D+ GGM+
Sbjct: 136 SSPLGATQLDTDGALWLGGME 156
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 531 DTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589
D GF + A V+V SV GSLA+ G++ G I +I + V P EV ++ +
Sbjct: 29 DYGFDIEEKNKA-VVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQS 86
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 533 GFGFSV---RGDAPVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
G G S+ R D V V+ + G +A G + GD I+ + DV+ + E V L+K
Sbjct: 17 GLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 558 GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590
G +K GD IV + D++ + HE+ V+ I+ AG
Sbjct: 56 GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG 88
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
P S+ L+ + +GF + G AP+ ++ V +GS A + GD I AI
Sbjct: 9 PHSVTLR----GPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGEST 64
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H E IK L+L +
Sbjct: 65 ELMTHLEAQNRIKGCHDHLTLSV 87
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 558 GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590
G +K GD IV + D++ + HE+ V+ I+ AG
Sbjct: 76 GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG 108
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 558 GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
G +K GD I+++ +DV+ S + V+ LIK+A + L++ T
Sbjct: 54 GRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 401 EFEPEDESQRKQLGVAHLRSALLFHEESQRIYRMC-RELRNKQALFQVL-----VQAHTL 454
E E DE RK+ H+R +F + + ++R E++N+ L+ V A L
Sbjct: 35 ELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNR--LYIVFEGEEGQDAGGL 92
Query: 455 TLEMYADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLFKQLGPVA 508
E Y + E FN MY +P + T+ P A+ FK +G +
Sbjct: 93 LREWYMIISRE-MFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIV 145
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 522 IQLQRANNS-----DTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
++L + +NS G SVR + A + G+ G + GD ++A+ ++
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 577 SPHEEVVQLIKDAGKCLSLKL 597
+ H++ V+ +++ G+ + L L
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 522 IQLQRANNS-----DTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
++L + +NS G SVR + A + G+ G + GD ++A+ ++
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 577 SPHEEVVQLIKDAGKCLSLKL 597
+ H++ V+ +++ G+ + L L
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVR---GDAPVIVAS-VDSGSLAQFGGMKDGDFIVAIGDR-- 572
P I ++ G GF V+ PVI++ + G+ Q G ++ GD I+A+ DR
Sbjct: 2 PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 61
Query: 573 -DVKWSPHEEVVQLI 586
D+ + EV++ I
Sbjct: 62 VDLSYDSALEVLRGI 76
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 414 GVAHLRSALL--FHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTM 471
GVA R+ L F EE+ + C E + ++ +++ +AH + E + DV+ E N
Sbjct: 48 GVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRI-FEEFVDVQAPREVNID 106
Query: 472 YEAPNITPSTKFQLTLTPPDFAHLPVEDLFKQ 503
++ T + +LT D A V L ++
Sbjct: 107 FQTREATRKNLQEPSLTCFDQAQGKVHSLMEK 138
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 414 GVAHLRSALL--FHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTM 471
GVA R+ L F EE+ + C E + ++ +++ +AH + E + DV+ E N
Sbjct: 27 GVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRI-FEEFVDVQAPREVNID 85
Query: 472 YEAPNITPSTKFQLTLTPPDFAHLPVEDLFKQ 503
++ T + +LT D A V L ++
Sbjct: 86 FQTREATRKNLQEPSLTCFDQAQGKVHSLMEK 117
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592
G SVR + A + G+ G + GD ++A+ ++ + H++ V+ +++ G+
Sbjct: 34 GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV 93
Query: 593 LSLKL 597
+ L L
Sbjct: 94 VHLLL 98
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 533 GFGFSVR---GDAPVIVAS-VDSGSLAQFGGMKDGDFIVAIGDR---DVKWSPHEEVVQL 585
G GF V+ PVI++ + G+ Q G ++ GD I+A+ DR D+ + EV++
Sbjct: 14 GLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 73
Query: 586 I 586
I
Sbjct: 74 I 74
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592
G SVR + A + G+ G + GD ++A+ ++ + H++ V+ +++ G+
Sbjct: 32 GVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV 91
Query: 593 LSLKL 597
+ L L
Sbjct: 92 VHLLL 96
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592
G SVR + A + G+ G + GD ++A+ ++ + H++ V+ +++ G+
Sbjct: 29 GVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV 88
Query: 593 LSLKL 597
+ L L
Sbjct: 89 VHLLL 93
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 533 GFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592
G SVR + A + G+ G + GD ++A+ ++ + H++ V+ +++ G+
Sbjct: 24 GVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV 83
Query: 593 LSLKL 597
+ L L
Sbjct: 84 VHLLL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,783,988
Number of Sequences: 62578
Number of extensions: 690064
Number of successful extensions: 1773
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 135
length of query: 665
length of database: 14,973,337
effective HSP length: 105
effective length of query: 560
effective length of database: 8,402,647
effective search space: 4705482320
effective search space used: 4705482320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)