Query psy12108
Match_columns 665
No_of_seqs 543 out of 2642
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:56:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09249 BRO1_Rhophilin_2 Prote 100.0 2.3E-92 5.1E-97 748.8 38.4 382 117-501 1-385 (385)
2 cd09248 BRO1_Rhophilin_1 Prote 100.0 1.6E-91 3.5E-96 743.4 39.6 377 117-501 1-384 (384)
3 cd09244 BRO1_Rhophilin Protein 100.0 4.7E-86 1E-90 702.8 38.4 349 117-501 1-350 (350)
4 cd09239 BRO1_HD-PTP_like Prote 100.0 1.4E-67 3E-72 567.5 36.8 320 112-476 3-330 (361)
5 cd09242 BRO1_ScBro1_like Prote 100.0 2.4E-64 5.2E-69 542.0 35.1 321 117-476 1-327 (348)
6 cd09241 BRO1_ScRim20-like Prot 100.0 8.6E-64 1.9E-68 539.3 35.0 338 117-510 2-354 (355)
7 cd09246 BRO1_Alix_like_1 Prote 100.0 9E-63 2E-67 530.4 35.4 314 117-476 1-324 (353)
8 cd09240 BRO1_Alix Protein-inte 100.0 1.5E-62 3.2E-67 527.7 35.2 309 116-476 2-326 (346)
9 PF03097 BRO1: BRO1-like domai 100.0 1.6E-60 3.6E-65 519.6 26.2 356 116-518 1-367 (377)
10 cd09034 BRO1_Alix_like Protein 100.0 1.2E-54 2.5E-59 468.2 34.7 315 117-477 1-328 (345)
11 cd09243 BRO1_Brox_like Protein 100.0 3.6E-45 7.8E-50 390.5 33.1 312 121-485 6-343 (353)
12 KOG2220|consensus 100.0 3.2E-43 6.9E-48 403.7 28.3 345 118-516 6-360 (714)
13 cd09245 BRO1_UmRIM23-like Prot 100.0 4.2E-40 9.1E-45 359.0 31.0 268 119-431 3-332 (413)
14 cd09247 BRO1_Alix_like_2 Prote 100.0 1E-37 2.2E-42 335.5 23.7 253 173-477 60-327 (346)
15 KOG2220|consensus 99.9 3.1E-29 6.8E-34 288.4 2.9 531 9-589 27-613 (714)
16 KOG3550|consensus 99.5 4.2E-13 9E-18 123.1 10.6 153 418-598 14-172 (207)
17 PF00595 PDZ: PDZ domain (Also 99.3 4.6E-12 1E-16 107.8 8.9 75 522-598 2-81 (81)
18 KOG3551|consensus 99.1 1.8E-10 3.8E-15 120.3 10.7 102 518-621 84-190 (506)
19 KOG3549|consensus 99.1 2.1E-10 4.5E-15 118.2 9.6 87 516-604 52-143 (505)
20 KOG3209|consensus 99.1 2.7E-10 5.9E-15 126.3 9.6 90 518-609 753-846 (984)
21 PRK11186 carboxy-terminal prot 99.0 2.2E-09 4.8E-14 123.9 14.9 166 397-600 147-320 (667)
22 cd00992 PDZ_signaling PDZ doma 99.0 1.7E-09 3.7E-14 91.6 10.5 76 520-597 2-81 (82)
23 cd00136 PDZ PDZ domain, also c 99.0 1.7E-09 3.7E-14 88.9 9.2 65 533-597 2-69 (70)
24 smart00228 PDZ Domain present 98.9 2.2E-08 4.7E-13 84.9 11.2 77 521-600 4-84 (85)
25 KOG3209|consensus 98.8 9.8E-09 2.1E-13 114.2 7.9 78 518-598 898-980 (984)
26 COG0793 Prc Periplasmic protea 98.8 2E-08 4.4E-13 110.5 9.2 101 497-601 68-172 (406)
27 cd00988 PDZ_CTP_protease PDZ d 98.8 4.8E-08 1E-12 83.5 9.5 69 532-600 2-72 (85)
28 KOG3606|consensus 98.7 1.2E-07 2.7E-12 95.2 13.3 91 515-606 155-259 (358)
29 KOG3552|consensus 98.7 1.6E-08 3.4E-13 115.2 7.3 96 499-600 35-132 (1298)
30 PF13180 PDZ_2: PDZ domain; PD 98.7 3.8E-08 8.2E-13 84.0 7.9 68 533-602 2-74 (82)
31 PLN00049 carboxyl-terminal pro 98.6 8.2E-08 1.8E-12 105.6 8.9 101 497-601 53-162 (389)
32 KOG3553|consensus 98.5 1.3E-07 2.8E-12 81.5 5.1 66 533-599 36-115 (124)
33 TIGR00225 prc C-terminal pepti 98.4 4.6E-07 9.9E-12 97.8 8.0 102 497-602 19-123 (334)
34 cd00989 PDZ_metalloprotease PD 98.4 1.3E-06 2.7E-11 73.4 8.5 67 533-601 2-70 (79)
35 cd00991 PDZ_archaeal_metallopr 98.3 1.8E-06 4E-11 73.1 7.4 57 543-601 11-69 (79)
36 KOG3651|consensus 98.3 3.2E-06 7E-11 86.4 9.1 82 519-602 5-91 (429)
37 cd00990 PDZ_glycyl_aminopeptid 98.2 3.9E-06 8.4E-11 70.8 7.9 65 534-601 3-68 (80)
38 KOG3580|consensus 98.2 4.7E-06 1E-10 91.6 8.5 81 520-603 10-100 (1027)
39 KOG1892|consensus 98.1 8.9E-06 1.9E-10 93.4 9.9 77 520-600 935-1019(1629)
40 cd00987 PDZ_serine_protease PD 98.1 9.2E-06 2E-10 69.8 7.4 58 542-601 24-83 (90)
41 KOG3580|consensus 98.1 5.6E-06 1.2E-10 91.1 6.9 95 499-598 389-487 (1027)
42 cd00986 PDZ_LON_protease PDZ d 98.0 1.9E-05 4E-10 66.7 7.4 56 543-601 9-66 (79)
43 KOG3542|consensus 98.0 7.3E-06 1.6E-10 91.2 5.6 95 500-598 519-617 (1283)
44 KOG0609|consensus 98.0 3.7E-05 8E-10 84.9 10.7 86 515-602 119-207 (542)
45 PF04495 GRASP55_65: GRASP55/6 97.7 0.00019 4.1E-09 67.5 8.5 92 509-604 3-105 (138)
46 TIGR01713 typeII_sec_gspC gene 97.6 0.00015 3.3E-09 75.4 8.3 58 543-602 192-251 (259)
47 KOG0606|consensus 97.6 8.9E-05 1.9E-09 87.7 7.2 74 522-598 630-714 (1205)
48 KOG3571|consensus 97.6 0.0002 4.4E-09 78.1 8.3 71 532-602 261-341 (626)
49 TIGR02037 degP_htrA_DO peripla 97.5 0.0002 4.3E-09 80.1 8.3 60 542-603 257-318 (428)
50 TIGR00054 RIP metalloprotease 97.5 0.00017 3.8E-09 80.3 7.4 59 543-603 204-263 (420)
51 PRK10139 serine endoprotease; 97.5 0.00018 3.9E-09 80.8 7.3 59 542-602 290-350 (455)
52 PRK10139 serine endoprotease; 97.5 0.0002 4.3E-09 80.5 7.6 59 542-602 390-448 (455)
53 PRK10779 zinc metallopeptidase 97.5 0.00023 4.9E-09 80.1 7.6 59 543-603 222-281 (449)
54 PRK10779 zinc metallopeptidase 97.5 0.00019 4.1E-09 80.7 6.6 58 543-602 127-186 (449)
55 PRK10942 serine endoprotease; 97.4 0.00026 5.5E-09 80.0 7.5 59 542-602 408-466 (473)
56 TIGR02038 protease_degS peripl 97.4 0.00027 5.9E-09 76.9 7.0 59 542-602 278-338 (351)
57 PRK10942 serine endoprotease; 97.4 0.00029 6.4E-09 79.5 7.3 60 542-603 311-372 (473)
58 TIGR02037 degP_htrA_DO peripla 97.4 0.00033 7.2E-09 78.2 7.5 59 542-602 362-422 (428)
59 PRK10898 serine endoprotease; 97.4 0.00035 7.6E-09 76.1 7.4 59 542-602 279-339 (353)
60 KOG3605|consensus 97.2 0.00038 8.2E-09 78.0 4.6 77 517-597 735-811 (829)
61 TIGR03279 cyano_FeS_chp putati 97.2 0.00056 1.2E-08 75.3 5.8 49 546-598 2-50 (433)
62 KOG3938|consensus 97.1 0.001 2.2E-08 67.4 7.1 85 514-601 122-211 (334)
63 KOG3605|consensus 97.0 0.001 2.2E-08 74.7 5.7 80 520-601 647-735 (829)
64 PF02185 HR1: Hr1 repeat; Int 97.0 0.001 2.2E-08 55.2 4.4 56 17-72 1-68 (70)
65 TIGR00054 RIP metalloprotease 96.9 0.0017 3.7E-08 72.4 6.6 57 542-600 128-184 (420)
66 KOG3129|consensus 96.9 0.0027 5.8E-08 62.6 6.9 64 544-607 141-206 (231)
67 TIGR02860 spore_IV_B stage IV 96.8 0.0039 8.5E-08 68.3 8.5 68 532-602 96-172 (402)
68 cd00089 HR1 Protein kinase C-r 96.8 0.0019 4.2E-08 53.8 4.7 56 11-66 3-71 (72)
69 KOG1738|consensus 96.4 0.02 4.3E-07 64.9 10.5 69 530-598 211-282 (638)
70 smart00742 Hr1 Rho effector or 96.4 0.0064 1.4E-07 48.3 4.9 45 18-62 2-57 (57)
71 PF14685 Tricorn_PDZ: Tricorn 96.3 0.017 3.7E-07 50.1 7.4 57 543-601 13-80 (88)
72 COG3975 Predicted protease wit 96.1 0.014 3E-07 65.1 7.5 42 531-572 450-492 (558)
73 COG0265 DegQ Trypsin-like seri 95.9 0.016 3.4E-07 63.0 6.9 60 541-602 269-330 (347)
74 KOG1320|consensus 95.9 0.036 7.7E-07 61.9 9.4 66 533-600 380-456 (473)
75 PRK09681 putative type II secr 95.5 0.051 1.1E-06 56.8 8.5 53 548-602 210-267 (276)
76 KOG3532|consensus 95.5 0.03 6.5E-07 63.5 7.0 67 531-599 385-453 (1051)
77 KOG4407|consensus 94.7 0.039 8.4E-07 66.6 5.3 60 544-603 145-204 (1973)
78 COG3480 SdrC Predicted secrete 92.4 0.31 6.6E-06 51.5 6.6 55 543-600 131-187 (342)
79 PF12812 PDZ_1: PDZ-like domai 92.0 0.32 7E-06 41.2 5.2 46 543-590 31-76 (78)
80 COG3031 PulC Type II secretory 91.5 0.77 1.7E-05 46.6 8.0 71 520-603 196-268 (275)
81 KOG1421|consensus 90.2 0.45 9.7E-06 54.6 5.6 56 544-602 305-361 (955)
82 KOG3834|consensus 87.9 1.6 3.5E-05 47.8 7.6 79 518-601 77-168 (462)
83 KOG3834|consensus 82.9 1.8 3.9E-05 47.5 5.0 62 542-604 15-77 (462)
84 COG0750 Predicted membrane-ass 78.7 4.9 0.00011 43.9 6.9 53 545-599 132-188 (375)
85 KOG0792|consensus 70.6 2.8 6.1E-05 50.7 2.5 59 531-589 715-797 (1144)
86 KOG2921|consensus 67.7 7.3 0.00016 42.5 4.6 44 543-588 221-265 (484)
87 KOG4371|consensus 66.3 7.4 0.00016 47.1 4.7 73 531-603 1157-1230(1332)
88 PF11874 DUF3394: Domain of un 56.4 15 0.00032 36.4 4.1 37 534-570 113-150 (183)
89 PF00515 TPR_1: Tetratricopept 50.8 25 0.00055 23.7 3.6 28 221-257 1-28 (34)
90 KOG1421|consensus 48.6 29 0.00062 40.6 5.4 48 542-592 862-909 (955)
91 COG5233 GRH1 Peripheral Golgi 43.7 14 0.0003 39.2 1.9 31 545-575 66-96 (417)
92 KOG2002|consensus 39.7 1.2E+02 0.0025 37.3 8.7 46 222-267 751-799 (1018)
93 PF13181 TPR_8: Tetratricopept 38.6 47 0.001 22.2 3.4 28 221-257 1-28 (34)
94 PF07719 TPR_2: Tetratricopept 38.2 53 0.0011 21.8 3.6 30 221-259 1-30 (34)
95 PF02071 NSF: Aromatic-di-Alan 36.7 16 0.00034 19.9 0.5 12 249-260 1-12 (12)
96 KOG4371|consensus 36.3 38 0.00082 41.5 4.1 77 522-600 1249-1329(1332)
97 PF02561 FliS: Flagellar prote 35.6 3.3E+02 0.0072 24.7 9.5 79 215-296 16-94 (122)
98 PF06552 TOM20_plant: Plant sp 33.6 77 0.0017 31.4 5.1 44 217-265 65-108 (186)
99 PF13424 TPR_12: Tetratricopep 33.0 84 0.0018 25.4 4.7 35 218-261 43-77 (78)
100 smart00671 SEL1 Sel1-like repe 32.5 82 0.0018 21.2 3.9 31 223-258 3-33 (36)
101 PF13176 TPR_7: Tetratricopept 32.4 63 0.0014 22.5 3.3 28 223-259 1-28 (36)
102 KOG2460|consensus 29.8 8.2E+02 0.018 28.4 12.7 56 342-433 405-460 (593)
103 PHA03332 membrane glycoprotein 29.7 89 0.0019 38.5 5.6 39 30-68 932-976 (1328)
104 PF08238 Sel1: Sel1 repeat; I 27.2 1.8E+02 0.0039 19.9 5.0 33 223-258 3-36 (39)
105 KOG1125|consensus 27.2 9.7E+02 0.021 28.0 13.0 90 281-372 403-496 (579)
106 cd02682 MIT_AAA_Arch MIT: doma 26.6 1.4E+02 0.003 25.2 4.8 43 224-268 2-44 (75)
107 KOG4407|consensus 26.3 27 0.00059 43.5 0.8 81 516-600 44-153 (1973)
108 cd05526 Bromo_polybromo_VI Bro 25.0 2E+02 0.0043 26.1 5.9 32 126-158 46-77 (110)
109 PF06780 Erp_C: Erp protein C- 24.1 69 0.0015 30.2 2.8 50 13-64 75-127 (146)
110 KOG0545|consensus 23.7 6.5E+02 0.014 26.5 9.8 115 321-461 196-314 (329)
111 KOG2002|consensus 23.7 1.1E+03 0.024 29.3 13.1 18 173-190 86-103 (1018)
112 KOG1703|consensus 23.1 44 0.00094 38.2 1.6 58 543-600 22-79 (479)
113 COG1528 Ftn Ferritin-like prot 22.3 6.4E+02 0.014 24.7 9.0 73 219-293 12-96 (167)
114 PF14938 SNAP: Soluble NSF att 21.8 8.1E+02 0.018 25.4 10.8 43 215-265 28-70 (282)
115 cd05517 Bromo_polybromo_II Bro 21.4 2.3E+02 0.005 25.1 5.6 56 126-182 45-101 (103)
No 1
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=100.00 E-value=2.3e-92 Score=748.81 Aligned_cols=382 Identities=46% Similarity=0.800 Sum_probs=361.2
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRS 196 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~ 196 (665)
|||||||+|++|||..||++||.++|+++++.|++||++|++||++++++.++++|+++|++||+||++|+.|||+++.+
T Consensus 1 ~i~lplK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~~~~~~~~sg~e~L~~YY~qL~~Le~RFp~~~~~ 80 (385)
T cd09249 1 LIPLGLKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLMDLRQACRTPSRDEAGVELLMSYFSQLGFLENRFFPPTRQ 80 (385)
T ss_pred CCCCCCCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHhhCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cceeEe-ecCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Q psy12108 197 LGIYFE-YDSLTGVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDL 275 (665)
Q Consensus 197 ~~v~F~-~dslt~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps~Dl 275 (665)
++|.|+ ||+|+|.+++++++.||||||||||||+|||+|+.++|.+++|+|.||++||+|||+|+||++++.+.|+.||
T Consensus 81 ~~v~FtW~Dsf~~~~~~q~sl~fEkasVLFNigAl~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~ps~Dl 160 (385)
T cd09249 81 MGILFTWYDSFTGVPVSQQNLLLEKASILFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKETFTHTPSYDM 160 (385)
T ss_pred ccceeeeeccCCCCccccccHHHHHHHHHHhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCcC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhHHHHHHHHHH
Q psy12108 276 GPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSWVSLIQVKKE 355 (665)
Q Consensus 276 s~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W~~~~~~K~~ 355 (665)
++++|++|+.|||||||||+|+|++.++. +....++++|||+|+||+++|++|++.|++.++++++|++|+.++++|++
T Consensus 161 s~~~L~~L~~LmLAQAQEc~~~Kai~d~~-k~~~~~i~kiAklAaqvs~~Y~~a~~al~s~~~~~~i~~~W~~~v~~K~~ 239 (385)
T cd09249 161 SPAMLSVLVKMMLAQAQECLFEKISLPGI-RNEFFTLVKMAQEAAKVGEVYMQVHTAMNQAPVKENIPYSWSSLVQVKAH 239 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998764 22333467899999999999999999999888999999999999999999
Q ss_pred HHHHHhhHHHhhhcccccccc--cchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q psy12108 356 HYLALSHYYCASGLLTKSLAN--LSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQRIYR 433 (665)
Q Consensus 356 ~f~A~A~y~~a~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~~ 433 (665)
||.|+||||+|..++++.... .....++++.++|..||+|.+ +..++++..+|+.+|||||++|+.+||||+|+++
T Consensus 240 ~f~AlA~Y~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~hl~~a~~~~eea~r~~~ 317 (385)
T cd09249 240 HYNALAHYFVATLLIDHQLNPSDDEDKQEKALSQLYDHMPEGLT--PLTILKNKQQRRLLGKAHLRRAIMHHEEAIREAS 317 (385)
T ss_pred HHHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHHhccccCC--hhhhhcccHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999875322 233444788999999999866 5568999999999999999999999999999999
Q ss_pred HhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCCCCCCccccCCCCCCCCCchhhhHH
Q psy12108 434 MCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLF 501 (665)
Q Consensus 434 ~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I~p~t~~~~~~~~P~f~~~~v~d~f 501 (665)
||+.||+++.|++||+.+|++++.+|++++.+|||.++..+|+|+|+|++++++++|+|++++|+|+|
T Consensus 318 ~c~~l~~~~~l~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~d~f 385 (385)
T cd09249 318 LCKKLRNIDVLQEVLSAAHNRSLLKYAQHQKEDDFLDLIDAPDIVSKTEKKVEMIIPQFSKVKVTDLF 385 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccCCcccccccCccccCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 2
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=100.00 E-value=1.6e-91 Score=743.41 Aligned_cols=377 Identities=47% Similarity=0.770 Sum_probs=347.4
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRS 196 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~ 196 (665)
|||||||+|.+|||..||++||.++|+++++.|++||.+|++||+++++++++++|+++|++||+||++|+.|||+++..
T Consensus 1 mi~lplK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~~~~~~~~sgle~L~~YY~qL~~Le~RFp~~~~~ 80 (384)
T cd09248 1 MIPLGLKETKELDLPTPLKELISEHFGEDGTSYEAEIRELEDLRQAMRTPSRSEAGLELLMAYYNQLCFLDARFFPPAKS 80 (384)
T ss_pred CCCCCCCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888778
Q ss_pred cceeEe-ecCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Q psy12108 197 LGIYFE-YDSLTGVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDL 275 (665)
Q Consensus 197 ~~v~F~-~dslt~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps~Dl 275 (665)
++|.|+ ||+|++.+.+++++.||||||||||||+|||+|+.++|.+++|+|.||.+||+|||||+||+++|.+.|+.||
T Consensus 81 ~~v~FtW~Daf~~~~~~q~sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~Ps~Dm 160 (384)
T cd09248 81 LGLFFHWYDSLTGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFSNAPSPDM 160 (384)
T ss_pred ccceeeeeccCCCCccccccHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhcc----ccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhHHHHHH
Q psy12108 276 GPPMLDMLIQLMLAQARECLFQKLQLQT----TEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSWVSLIQ 351 (665)
Q Consensus 276 s~~~L~~L~~lmLAQAQEc~~~Ka~~~~----~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W~~~~~ 351 (665)
++++|.+|+.|||||||||+|+|++++. .++.+.. .|||+|+||+++|.+|++.|++++++++++++|+.+++
T Consensus 161 s~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~d~~k~~---~iAKlAaQvs~~Y~~a~~~~~~~~~~~~i~~~W~~~v~ 237 (384)
T cd09248 161 STASLSMLEQLMVAQAQECIFEGLLLPLLATPQDFFAQL---QLAQEAAQVAAEYRLVHRTMAQPPVRDYVPFSWTALVH 237 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhh---HHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence 9999999999999999999999999432 2222333 48999999999999999999998899999999999999
Q ss_pred HHHHHHHHHhhHHHhhhccccccccc--chhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHH
Q psy12108 352 VKKEHYLALSHYYCASGLLTKSLANL--SSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQ 429 (665)
Q Consensus 352 ~K~~~f~A~A~y~~a~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAl 429 (665)
+|++||.|+||||+|+++++.....- ....++++.+.+.. .|.++.|++++++|+.+|||||++|+..||||+
T Consensus 238 ~K~~hF~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ahl~~a~~~~eea~ 312 (384)
T cd09248 238 VKAEHFCALAHYHAAMALCDSSPASEGELATQEKAFLQPHTS-----QPEGPSLPQEPEERRKLGKAHLKRAILGQEEAL 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHhccCCCC-----CCCccccccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999998752211 11112333333222 345566999999999999999999999999999
Q ss_pred HHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCCCCCCccccCCCCCCCCCchhhhHH
Q psy12108 430 RIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLF 501 (665)
Q Consensus 430 Rl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I~p~t~~~~~~~~P~f~~~~v~d~f 501 (665)
|+++||+.||+++.|++||+.+|+++..+|++++++|||.++.++|+|+|+|++++++++|+|++++++|+|
T Consensus 313 r~~~~c~~l~~~~~l~~~l~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~f 384 (384)
T cd09248 313 RLHALCRILRKVDLLQAVLTQALRRSLAKYSELDREDDFFETGEAPDIQPKTHQKPEIRAPSFSQVKVTDIF 384 (384)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhccccchhhccccCccccccccCcccCCCCcccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 3
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=100.00 E-value=4.7e-86 Score=702.81 Aligned_cols=349 Identities=63% Similarity=1.045 Sum_probs=338.6
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRS 196 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~ 196 (665)
|||||||+|++|||..||++||.+||+++++.|+++|++|++||+++++|.++++|+++|.+||+||++|+.|||+++++
T Consensus 1 mi~l~lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~~LR~~~~~~~~~~~g~~~L~~YY~qL~~le~RFp~~~~~ 80 (350)
T cd09244 1 MIPLGLKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFTDLRQAMRTPSRDEAGIELLFEYYNQLYFVERRFFPPDRS 80 (350)
T ss_pred CCCCCCCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cceeEe-ecCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Q psy12108 197 LGIYFE-YDSLTGVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDL 275 (665)
Q Consensus 197 ~~v~F~-~dslt~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps~Dl 275 (665)
++|.|+ ||+|+|.+++|+++.||||||||||||+|||+|+.++|.+++|+|+||.+||+|||+|+||+|+|.+.|+.||
T Consensus 81 ~~v~F~W~Ds~~~~~~~q~sl~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~~~~~ps~Dl 160 (350)
T cd09244 81 LGIYFHWYDSLTGVPSVQRSVAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLRENFSNAPSMDL 160 (350)
T ss_pred ccceeeeecccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhHHHHHHHHHH
Q psy12108 276 GPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSWVSLIQVKKE 355 (665)
Q Consensus 276 s~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W~~~~~~K~~ 355 (665)
++++|++|+.|||||||||+|+|++.++..++...++++|||+|+||+++|++|++.+++++++++++++|..++++|++
T Consensus 161 s~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~~~~~~~lAklA~qv~~~Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~ 240 (350)
T cd09244 161 SPEMLEALIKLMLAQAQECVFEKLVLPGEDSKDIQACLDLAQEAAQVSDCYSEVHKLMNQEPVKDYIPYSWISLVEVKSE 240 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHH
Confidence 99999999999999999999999998874566777788899999999999999999999888999999999999999999
Q ss_pred HHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy12108 356 HYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQRIYRMC 435 (665)
Q Consensus 356 ~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~~~c 435 (665)
||+|+||||+|+.+++. +|+|+++|||++|+..||+|.|++++|
T Consensus 241 ~f~AlA~y~~a~~l~~~------------------------------------~~~g~~~a~L~~A~~~~e~a~~~~~~c 284 (350)
T cd09244 241 HYKALAHYYAAMGLLLE------------------------------------ERRLLGKAHLKEALLLHEEALRLHRMC 284 (350)
T ss_pred HHHHHHHHHHHHHhhHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988754 389999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCCCCCCccccCCCCCCCCCchhhhHH
Q psy12108 436 RELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLF 501 (665)
Q Consensus 436 ~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I~p~t~~~~~~~~P~f~~~~v~d~f 501 (665)
|.|++.+.|+++|+.+|.+++.+|.+++++|||.+..++|+|.|.|++++.+++|+|++++++|+|
T Consensus 285 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~d~f 350 (350)
T cd09244 285 RFLRNVDSLQEVLKEAHDRSLNKYSSLEEEDDFSDALDAPDIQAKTKQQLEIIPPDFTQVKVKDLF 350 (350)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhhccccchhhccccCCccccccccccccCCCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987
No 4
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=100.00 E-value=1.4e-67 Score=567.53 Aligned_cols=320 Identities=28% Similarity=0.401 Sum_probs=289.4
Q ss_pred CCccccccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccC
Q psy12108 112 EPVMPMIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFF 191 (665)
Q Consensus 112 ~~~~pmi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~ 191 (665)
.|+||||++|||+|.+|||..||++||.++|+++++.|+++|.+|++||++++++.++++|++.|.+||.||+.|+.|||
T Consensus 3 ~~~~p~l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp 82 (361)
T cd09239 3 VPRLPMLWLQLKSSGEFTFQPALKKYILENYGEDPELYSEELKSLEQLRQEAVNPPRDFEGCSVLKRYYGQLHLLQSRFP 82 (361)
T ss_pred CCCCCccccCCCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC-CCCcceeEe-ecCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccC
Q psy12108 192 PP-DRSLGIYFE-YDSLTGVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTN 269 (665)
Q Consensus 192 ~~-~~~~~v~F~-~dslt~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~ 269 (665)
.+ +..++|.|+ ||+|++.+++++++.||||||||||||+|||+|+.++|.+++|+|.||.+||+|||+|+||++++.+
T Consensus 83 ~~~~~~~~v~F~W~d~~~~~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~ 162 (361)
T cd09239 83 MGAGQEAAVPFTWTDIFSGSEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQ 162 (361)
T ss_pred CCccccccceeeeecccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 65 455789999 9999988899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCcc-----ccCccc
Q psy12108 270 APSM-DLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPE-----VKDYVP 343 (665)
Q Consensus 270 ~ps~-Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~-----~~~~~~ 343 (665)
.++. ||++++|.+|..|||||||||+|+||+.++. +.++ |||+|+||+++|++|++.+++.. +.++++
T Consensus 163 ~~~~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~d~~---k~sl---iAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~ 236 (361)
T cd09239 163 VYGAVDMSSQLLSFNYSLMLAQAQECLLEKSLLDNR---KSHI---TAKVSAQVVEYYKEALRALENWESNSKIILGKIQ 236 (361)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC---chHH---HHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 8877 9999999999999999999999999997543 5555 89999999999999999988632 346799
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHH
Q psy12108 344 LSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALL 423 (665)
Q Consensus 344 ~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~ 423 (665)
++|..++++|++||+|+||||+|..+.+.. ++|+++|||+.|..
T Consensus 237 ~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~------------------------------------k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 237 KEWRKLVQMKIAYYASIAHLHMGKQSEEQQ------------------------------------KMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999887643 79999999999999
Q ss_pred HHHHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCC
Q psy12108 424 FHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPN 476 (665)
Q Consensus 424 ~~eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~ 476 (665)
.+++|.+.+ +.+++...+.+.++........++.+.++||||...-.+|.
T Consensus 281 ~l~~a~~~~---~~~~~~~~~~~~~~~l~~~i~~~l~~aekDNd~IYhe~VP~ 330 (361)
T cd09239 281 KLEEAIKNA---KGQPDTVNLQEALSFTMDVIGGKRNSAKKENDFIYHEAVPK 330 (361)
T ss_pred HHHHHHHHH---hCCCcchhHHHHHHHHHHHHHHHHHHHhcccCceeecCCCC
Confidence 999999885 34444455777777777777778888899999986655553
No 5
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=100.00 E-value=2.4e-64 Score=541.97 Aligned_cols=321 Identities=30% Similarity=0.455 Sum_probs=281.8
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRS 196 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~ 196 (665)
||+||+|+|.+|||..||++||.++|+++++.|+++|.+|++||++++++.++++|++.|.+||+||++|+.|||.++.+
T Consensus 1 ~l~lplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp~~~~~ 80 (348)
T cd09242 1 LISLPLKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFDRLRQDANGVLADETGRDLLYKYYGQLELLELRFPFNNKE 80 (348)
T ss_pred CCCCCCCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 79999999999999999999999999999999999999999999999998889999999999999999999999887778
Q ss_pred cceeEe-ecCCC-CCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Q psy12108 197 LGIYFE-YDSLT-GVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMD 274 (665)
Q Consensus 197 ~~v~F~-~dslt-~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps~D 274 (665)
++|.|+ ||+|+ +.+++++++.||++||||||||+||++|..++|.+++|+|.||++||+|||+|+||++++.+.|+.|
T Consensus 81 ~~v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~D 160 (348)
T cd09242 81 LKVDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHAPSVD 160 (348)
T ss_pred ccceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 899999 99998 6888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCc--cccCccchhHHHHHHH
Q psy12108 275 LGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVP--EVKDYVPLSWVSLIQV 352 (665)
Q Consensus 275 ls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~--~~~~~~~~~W~~~~~~ 352 (665)
|++++|.+|..+||||||||+|+|++.++..+++.++ |||+|+||+++|++|++.+... ...++++++|..++++
T Consensus 161 l~~~~l~~L~~lmLAQAQE~~~~Kai~~~~~~~k~sl---iaKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~ 237 (348)
T cd09242 161 LQQENVKFLVKLMLAQAQEIFLLKLINGDDAQKKASL---ISKLASATANLYESCVEFLKEIQEKGISYGDPKWISLVQC 237 (348)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHH---HHHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHH
Confidence 9999999999999999999999999986532345555 8999999999999999998853 2345799999999999
Q ss_pred HHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12108 353 KKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQRIY 432 (665)
Q Consensus 353 K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~ 432 (665)
|..||+|+||||+|..+.+++ ++|+++|||+.|...++++.+..
T Consensus 238 K~~~f~A~A~y~~a~~~~~~~------------------------------------k~GeaIa~L~~A~~~l~~a~~~~ 281 (348)
T cd09242 238 KAHYYKSLAAYYHALALEAAG------------------------------------KYGEAIAYLTQAESILKEANPQK 281 (348)
T ss_pred HHHHHHHHHHHHHHHHhHHhc------------------------------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887753 79999999999999999998874
Q ss_pred hHhhh-h-cchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCC
Q psy12108 433 RMCRE-L-RNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPN 476 (665)
Q Consensus 433 ~~c~~-l-r~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~ 476 (665)
.-+.. . .....+.+.++........++.+.++|+||...-.+|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~aekDNd~IY~~~VP~ 327 (348)
T cd09242 282 LSLKASAGDAAYALNDDFKGQKDTVEEKLKELEKDNDFIYHDIVPS 327 (348)
T ss_pred hcCCCccccchhHHHHHHHHHHHHHHHHHHHHhcccCeeccCCCCC
Confidence 21110 0 01123555555555555556667778888876655553
No 6
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=100.00 E-value=8.6e-64 Score=539.33 Aligned_cols=338 Identities=29% Similarity=0.479 Sum_probs=281.4
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRS 196 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~ 196 (665)
||+||+|+|.+|||..||++||.+||+++++.|++||.+|++||++++++.++++|+++|.+||.||+.|+.||| .
T Consensus 2 ~l~ip~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp----~ 77 (355)
T cd09241 2 LLSIPFKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEIDKLRNDAINPEPSVNGLSLLKEYYAQLVVLSKKFP----D 77 (355)
T ss_pred cCccCCCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHhcCC----C
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999994 3
Q ss_pred cceeEe-ecCCCC---CcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCC--
Q psy12108 197 LGIYFE-YDSLTG---VPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA-- 270 (665)
Q Consensus 197 ~~v~F~-~dslt~---~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~-- 270 (665)
.+|.|+ ||+|++ .++++.++.||++||||||||+|||+|..++|.+++|+|+||++||+|||+|+||++++.+.
T Consensus 78 ~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~ 157 (355)
T cd09241 78 DQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLS 157 (355)
T ss_pred cCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 689999 999986 47788999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhHHHHH
Q psy12108 271 PSMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSWVSLI 350 (665)
Q Consensus 271 ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W~~~~ 350 (665)
|+.||++++|.+|..+||||||||+|+||+.++. +.++ |||+|+||+++|++|++.++. .+.++++|..++
T Consensus 158 ~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~---k~sl---iAKLa~qv~~~Y~~a~~~l~~---~~~i~~~W~~~v 228 (355)
T cd09241 158 PPPDLDENTLKALESLMLAQAQECFWQKAISDGT---KDSL---IAKLAAQVSDYYQEALKYANK---SDLIRSDWINHL 228 (355)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cchH---HHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHHH
Confidence 9999999999999999999999999999998654 4444 899999999999999999983 456899999999
Q ss_pred HHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12108 351 QVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQR 430 (665)
Q Consensus 351 ~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlR 430 (665)
++|..||+|+||||+|..+.+. +++|+++|||+.|...+++|.+
T Consensus 229 ~~K~~~f~A~A~y~~a~~~~e~------------------------------------~k~Ge~Ia~L~~A~~~l~~a~~ 272 (355)
T cd09241 229 KVKKHHFKAAAHYRMALVALEK------------------------------------SKYGEEVARLRVALAACKEALK 272 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987664 3799999999999999999998
Q ss_pred HHhHhhh--hcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCC---CCCCcc-ccCCCCCC-C--CCchhhhHH
Q psy12108 431 IYRMCRE--LRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNI---TPSTKF-QLTLTPPD-F--AHLPVEDLF 501 (665)
Q Consensus 431 l~~~c~~--lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I---~p~t~~-~~~~~~P~-f--~~~~v~d~f 501 (665)
..+.... ..+...|.++++..+ .+.++++||...-.+|+. .|.... .+.+++|. . ......|+|
T Consensus 273 ~~~~~~~~~~~~~~~l~~~i~~~l-------~~aekdNd~IY~e~VP~~~~L~~i~~~~~vk~~~~~~~~~~~~~~~~lF 345 (355)
T cd09241 273 EARYGNKAVLEDLQGLKDIVKESL-------KRAERDNDLIYLQPVPPASELPPIKPASMVKAIVPPELEEGSKLGKPLF 345 (355)
T ss_pred HhhccchhHHHHHHHHHHHHHHHH-------HHHhhccCeeCCcCCCCcccCCCCCCcccccccCchhhcccccccchHH
Confidence 7543310 012233444444444 445555655544333331 111111 11112121 1 233467999
Q ss_pred hhcCccccc
Q psy12108 502 KQLGPVAIF 510 (665)
Q Consensus 502 ~~LgP~svf 510 (665)
++|.|..++
T Consensus 346 ~~lvP~~v~ 354 (355)
T cd09241 346 KDLLPYGVH 354 (355)
T ss_pred HhccCHHhc
Confidence 999998774
No 7
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=100.00 E-value=9e-63 Score=530.37 Aligned_cols=314 Identities=29% Similarity=0.447 Sum_probs=273.7
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCC-ChhhHHHHHHHHHHHHHHhcCCCCC-chhhhHHHHHHHHHHHHHhccCCCC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSE-DGTAYEDSVSEFMDMRQAMRTPNRD-NSGISLLFQYYNQLYFIERRFFPPD 194 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e-~~~~~~~~i~~l~~LR~~~~~~~~~-~~~~~~L~~Yy~qL~~l~~rf~~~~ 194 (665)
||+||+|+|.+|||..||++||.++|++ +++.|+++|.+|++||++++++.++ +++++.|.+||+||++|+.|||+..
T Consensus 1 ~l~ip~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~~ 80 (353)
T cd09246 1 MLSIHRKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQQLRSEVRTLQEKHAASRELLLRYYRALCAVESRFPISE 80 (353)
T ss_pred CCCCCCCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHccCCCCc
Confidence 7899999999999999999999999995 6899999999999999999998865 7889999999999999999997654
Q ss_pred C--CcceeEe-ecCCCC-CcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccC-
Q psy12108 195 R--SLGIYFE-YDSLTG-VPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTN- 269 (665)
Q Consensus 195 ~--~~~v~F~-~dslt~-~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~- 269 (665)
. .++|.|+ ||+|++ .++++.++.||++||||||||+|||+|+.++|.+++|+|+||++||+|||+|+||++++.+
T Consensus 81 ~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~~~~~ 160 (353)
T cd09246 81 ESGHARVSFSWYDAFRPHRKATQANVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDKVSGK 160 (353)
T ss_pred ccccccceeEeeccCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 5789999 999988 7889999999999999999999999999999999999999999999999999999999864
Q ss_pred ---CCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhH
Q psy12108 270 ---APSMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSW 346 (665)
Q Consensus 270 ---~ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W 346 (665)
.|+.||++++|.+|..+||||||||+|+||+.++ ++.++ |||+|+||+++|++|++.++++++.++++++|
T Consensus 161 ~~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~---~k~sl---iAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W 234 (353)
T cd09246 161 TGGFRTPDLTAECLGMLESLMLAQAQECFYEKAVADG---KSPAV---CSKLAKQARSYYEEALEALDSPPLKGHFDKSW 234 (353)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccH---HHHHHHHHHHHHHHHHHHHhcccccccccHHH
Confidence 6899999999999999999999999999999754 35555 89999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHH
Q psy12108 347 VSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHE 426 (665)
Q Consensus 347 ~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~e 426 (665)
..++++|..||+|+||||+|..+.+.. ++|+++|+|+.|...++
T Consensus 235 ~~~~~~K~~~f~A~A~~~~a~~~~~~~------------------------------------k~GeaIa~L~~A~~~l~ 278 (353)
T cd09246 235 VAHVQLKAAYFRAEALYRAAKDLHEKE------------------------------------DIGEEIARLRAASDALA 278 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhc------------------------------------chHHHHHHHHHHHHHHH
Confidence 999999999999999999999887753 79999999999999998
Q ss_pred HHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCC
Q psy12108 427 ESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPN 476 (665)
Q Consensus 427 eAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~ 476 (665)
+|.+... .... ..+.+.++.-.......+.+.++++||...-.+|.
T Consensus 279 ~a~k~~~---~~~~-~~~~~~~~~l~~~v~~~l~~aekdNd~IY~~~VP~ 324 (353)
T cd09246 279 EARKQAK---GVNG-DELIEAVSELEQVINELLERAEKENDCVYLDRVPA 324 (353)
T ss_pred HHHHHhh---cCCc-HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Confidence 8887632 1110 03444444444444445566777787776655543
No 8
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=100.00 E-value=1.5e-62 Score=527.74 Aligned_cols=309 Identities=28% Similarity=0.456 Sum_probs=269.2
Q ss_pred ccccCCCCCCCCCCChHHHHHHHhhhcC--CChhhHHHHHHHHHHHHHHh--cCCCCCchhhhHHHHHHHHHHHHHhccC
Q psy12108 116 PMIPLGLKETKEIDVREPFKDFILEHYS--EDGTAYEDSVSEFMDMRQAM--RTPNRDNSGISLLFQYYNQLYFIERRFF 191 (665)
Q Consensus 116 pmi~l~lK~T~~vD~~~~L~~~I~~~y~--e~~~~~~~~i~~l~~LR~~~--~~~~~~~~~~~~L~~Yy~qL~~l~~rf~ 191 (665)
-||.||+|+|.+|||..||++||.++|+ ++++.|+++|.+|++||+++ ++++++++|++.|.+||+||+.|+.|||
T Consensus 2 ~~l~iplK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp 81 (346)
T cd09240 2 SFISVPLKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELNKLRNNAVCRPLDKHESSLELLLRYYDQLCAIEPKFP 81 (346)
T ss_pred CeeeccCcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 3889999999999999999999999999 99999999999999999985 3466779999999999999999999998
Q ss_pred CCCCCcceeEe-ecCCCC-------CcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHH
Q psy12108 192 PPDRSLGIYFE-YDSLTG-------VPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYL 263 (665)
Q Consensus 192 ~~~~~~~v~F~-~dslt~-------~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l 263 (665)
.++..++|.|+ ||+|++ .+.++.++.||++||||||||+|||+|+.++|.+++|+|.||.+||+|||+|+||
T Consensus 82 ~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 82 FSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred CCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 77667899999 999863 2457899999999999999999999999999999999999999999999999999
Q ss_pred HhhccC----CCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q psy12108 264 QENFTN----APSMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVK 339 (665)
Q Consensus 264 ~e~~~~----~ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~ 339 (665)
++++.+ .|+.||++++|.+|..+||||||||+|+||+.++ ++.++ |||+|+||+++|++|++.+++..++
T Consensus 162 ~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~~~---~k~~l---iAKLa~qv~~~Y~~a~~~l~~~~~~ 235 (346)
T cd09240 162 KETVLSALQQEPTPDLSPDTLSALSALMLAQAQEVFYLKATRDK---MKDAI---IAKLAAQAADYYGDAFKQCQREDVR 235 (346)
T ss_pred HHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc---CchhH---HHHHHHHHHHHHHHHHHHHhcchhc
Confidence 999853 5899999999999999999999999999999754 35555 8999999999999999999988888
Q ss_pred CccchhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHH
Q psy12108 340 DYVPLSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLR 419 (665)
Q Consensus 340 ~~~~~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr 419 (665)
++++++|..++++|..||.|+||||+|..+.+.. ++|+++|||+
T Consensus 236 ~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~------------------------------------k~GeaIa~L~ 279 (346)
T cd09240 236 SLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQK------------------------------------KFGEEIARLQ 279 (346)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------------------------------------hHHHHHHHHH
Confidence 8999999999999999999999999999876643 8999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCC
Q psy12108 420 SALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPN 476 (665)
Q Consensus 420 ~A~~~~eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~ 476 (665)
.|...++++.+. |+..-+...+.++++..+ .+.++++||...-.+|.
T Consensus 280 ~A~~~~~~a~~~---~~~~~~~~~l~~~i~~~l-------~~aekDNd~IY~e~VP~ 326 (346)
T cd09240 280 HALELIKTAQSR---AGEYVDVKDFAAKISRAL-------TAAKKDNDFIYHDRVPD 326 (346)
T ss_pred HHHHHHHHHHHH---hcchhHHHHHHHHHHHHH-------HHHhhccCeEeccCCCC
Confidence 999999998875 322222334444444443 44556677765554443
No 9
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=100.00 E-value=1.6e-60 Score=519.60 Aligned_cols=356 Identities=37% Similarity=0.600 Sum_probs=289.6
Q ss_pred ccccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCC-CCCchhhhHHHHHHHHHHHHHhccCCCC
Q psy12108 116 PMIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTP-NRDNSGISLLFQYYNQLYFIERRFFPPD 194 (665)
Q Consensus 116 pmi~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~-~~~~~~~~~L~~Yy~qL~~l~~rf~~~~ 194 (665)
|||+||||+|++|||..||++||.++|+++++.|+++|++|++||+.++++ ++++++++.|.+||.||+.|+.||+ +
T Consensus 1 ~~~~lplK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~l~~Y~~~L~~l~~~~p--~ 78 (377)
T PF03097_consen 1 PMLSLPLKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELDKLRQDARNPQSPSESGLKLLEEYYPQLESLEKRFP--S 78 (377)
T ss_dssp ---------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHHHHHHHHHTSS-SSHHHHHHHHHHHHHHHHHCCCSC--S
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHhcc--c
Confidence 899999999999999999999999999999999999999999999999998 9999999999999999999999993 6
Q ss_pred CCcceeEe-ecCC-CCCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCC
Q psy12108 195 RSLGIYFE-YDSL-TGVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPS 272 (665)
Q Consensus 195 ~~~~v~F~-~dsl-t~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps 272 (665)
..++|.|+ +|+| ++.++++.++.||+||||||+|++|+++|+.++|.+++|+|.|+.+||+|||+|+||++++.+.|+
T Consensus 79 ~~~~i~F~W~d~~~~~~~~~~~~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s 158 (377)
T PF03097_consen 79 DQIQISFTWSDSLSTGKPVSQSSLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPS 158 (377)
T ss_dssp SCCTT-EEEE-TTSTTSEEEESSHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS
T ss_pred ccceeeEeeeccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 66789999 8999 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhHHHHHHH
Q psy12108 273 MDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSWVSLIQV 352 (665)
Q Consensus 273 ~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W~~~~~~ 352 (665)
.||++++|.+|.++||||||||+|+|++.++. +.++ |||+|++|+++|++|.+.+...+..+.+++.|..++++
T Consensus 159 ~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~~~~---~~~l---iAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~ 232 (377)
T PF03097_consen 159 PDLSPEVLSALSNLMLAQAQECFYEKAIADKK---KPSL---IAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQV 232 (377)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTG----HHH---HHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHccC---chHH---HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 99999999999999999999999999998533 5555 89999999999999999999988878899999999999
Q ss_pred HHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12108 353 KKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQRIY 432 (665)
Q Consensus 353 K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~ 432 (665)
|..||.|+||||+|..+.+.. ++|++++||+.|...++++.+..
T Consensus 233 K~~~~~A~A~y~~A~~~~~~~------------------------------------~~G~aia~L~~A~~~l~~a~~~~ 276 (377)
T PF03097_consen 233 KSAYYRALAHYHQALAAEEAK------------------------------------KYGEAIARLRRAEEALKEASKLA 276 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------------------------------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh------------------------------------cccHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999886543 79999999999999999999997
Q ss_pred hHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCCCCCCcc-----ccCCCCCCC---CCchhhhHHhhc
Q psy12108 433 RMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKF-----QLTLTPPDF---AHLPVEDLFKQL 504 (665)
Q Consensus 433 ~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I~p~t~~-----~~~~~~P~f---~~~~v~d~f~~L 504 (665)
..| .....+...+....+.....+.+.+++|++...-.+|+..+.+.. -.++..|++ ......|+|.+|
T Consensus 277 ~~~---~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy~e~VP~~~~L~~~~~~~~vk~~~~~~~~~~~~~~~~dlF~~l 353 (377)
T PF03097_consen 277 KKC---SKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIYHEPVPSESELPPIKPASMVKPIPPPEFTSPESVKGPDLFKKL 353 (377)
T ss_dssp CCH---SCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT--S--SCGGSGGS-SSSTT----HHCCHCCHHHHHCHTTTTC
T ss_pred hcc---cchHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcccccccccccccCCCCCccccccccccccchHHhc
Confidence 655 445555566666666666667777778887766555554322211 111233334 334778999999
Q ss_pred Cccccccccccccc
Q psy12108 505 GPVAIFSAKHHWTA 518 (665)
Q Consensus 505 gP~svf~~~~~~~~ 518 (665)
+|++|+.+...|..
T Consensus 354 vP~~v~~a~s~y~e 367 (377)
T PF03097_consen 354 VPLSVHEASSRYSE 367 (377)
T ss_dssp --HHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988777654
No 10
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=100.00 E-value=1.2e-54 Score=468.18 Aligned_cols=315 Identities=27% Similarity=0.410 Sum_probs=272.3
Q ss_pred cccCCCCCCCCCCChHHHHHHHhhhcCC-ChhhHHHHHHHHHHHHHHhcCCCCC----chhhhHHHHHHHHHHHHHhccC
Q psy12108 117 MIPLGLKETKEIDVREPFKDFILEHYSE-DGTAYEDSVSEFMDMRQAMRTPNRD----NSGISLLFQYYNQLYFIERRFF 191 (665)
Q Consensus 117 mi~l~lK~T~~vD~~~~L~~~I~~~y~e-~~~~~~~~i~~l~~LR~~~~~~~~~----~~~~~~L~~Yy~qL~~l~~rf~ 191 (665)
||++|||+|.+|||..+|++||..+|++ +++.|+++|+++++||+.+.++..+ +++++.|.+||.||..|+.||+
T Consensus 1 ~i~~plk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~~~~~~~~~~~~~l~~Y~~~L~~l~~~~~ 80 (345)
T cd09034 1 FIGLPLKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQNNDTTCENLLEALKEYLPYLLGLEKKLP 80 (345)
T ss_pred CCCCCCCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999997 9999999999999999998776555 8899999999999999999997
Q ss_pred CCCCCcceeEe-ecCCCCCcccccchhHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHHHhHHHHHhhccC
Q psy12108 192 PPDRSLGIYFE-YDSLTGVPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLT-STGLDQAVDNFLRAAGTFTYLQENFTN 269 (665)
Q Consensus 192 ~~~~~~~v~F~-~dslt~~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t-~~glK~A~~~Fq~AAG~f~~l~e~~~~ 269 (665)
+.....+|.|+ +|+|+....+..++.||++|||||+|++|+++|..+++.+ ++|+|.||++||+|||+|+||++++.+
T Consensus 81 ~~~~~~~i~F~W~d~~~~~~~~~~~l~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~ 160 (345)
T cd09034 81 FQKLRDNVEFTWTDSFDTKKESATSLRYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLP 160 (345)
T ss_pred cccccccceeEeecccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666899999 8999854333339999999999999999999999999988 899999999999999999999999976
Q ss_pred CC----CCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCcccc--Cccc
Q psy12108 270 AP----SMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVK--DYVP 343 (665)
Q Consensus 270 ~p----s~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~--~~~~ 343 (665)
.+ +.||++++|.+|..+||||||||+|+||+.++. .+..+ |||+|.+++++|++|.+.++..... ++++
T Consensus 161 ~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~--~~~~l---iakLa~~~~~~y~~A~~~l~~~~~~~~~~~~ 235 (345)
T cd09034 161 LPPDELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKK--AKLSL---LARLACEAAKYYEEALKCLSGVDLETIKNIP 235 (345)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhccc--CcHHH---HHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 54 489999999999999999999999999997542 34555 8999999999999999999875542 6799
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHH
Q psy12108 344 LSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALL 423 (665)
Q Consensus 344 ~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~ 423 (665)
.+|..++++|..||+|+||||+|..+.+.+ ++|++++||+.|..
T Consensus 236 ~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~------------------------------------~~G~aia~L~~A~~ 279 (345)
T cd09034 236 KKWLLFLKWKKCIFKALAYYYHGLKLDEAN------------------------------------KIGEAIARLQAALE 279 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------------------------cHHHHHHHHHHHHH
Confidence 999999999999999999999999887653 79999999999999
Q ss_pred HHHHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCC
Q psy12108 424 FHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNI 477 (665)
Q Consensus 424 ~~eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I 477 (665)
.++++.+....+.. .+...++...+.....+.+.++++++...-.+|+.
T Consensus 280 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~i~~~l~~~~kdNd~Iy~e~VP~~ 328 (345)
T cd09034 280 LLKESERLCKSFLL-----DVWGNLKKLKEKIEKELEKAERENDFIYFEEVPPE 328 (345)
T ss_pred HHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHhhhhHhhcccCCCC
Confidence 99999997543321 23444555555556666777778888766666654
No 11
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=100.00 E-value=3.6e-45 Score=390.46 Aligned_cols=312 Identities=21% Similarity=0.282 Sum_probs=240.6
Q ss_pred CCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHH----hcCCCCCchhh-hHHHHHHHHHHHHHhccCC--C
Q psy12108 121 GLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQA----MRTPNRDNSGI-SLLFQYYNQLYFIERRFFP--P 193 (665)
Q Consensus 121 ~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~----~~~~~~~~~~~-~~L~~Yy~qL~~l~~rf~~--~ 193 (665)
|||.|.+|+|. ++... .......-+.++..-|.. +.+|+.+.+.+ ..|.+|+..|.++..-... .
T Consensus 6 ~~k~t~~~~f~--~~~~~------~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~a~~~Yl~ll~g~~~~~d~~~~ 77 (353)
T cd09243 6 PLKATAPVKFD--LKGVA------TTPAASKLCSDLRTARARLLELLSDPSNDVDTVKTAFNAYLSLLQGFILALDGKTQ 77 (353)
T ss_pred ccccccccccc--ccccc------CChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 79999999995 33221 123556777888777765 37787776655 7999999999998763211 1
Q ss_pred CC--CcceeEe-ecCC-CCCcccccchhHHHHHHHHHHHHHHHHHHhh----cCCCChhhHHHHHHHHHHHHHhHHHHHh
Q psy12108 194 DR--SLGIYFE-YDSL-TGVPSCQRTIAFEKACVLFNMAAIYTQMAAK----QDRLTSTGLDQAVDNFLRAAGTFTYLQE 265 (665)
Q Consensus 194 ~~--~~~v~F~-~dsl-t~~~~~q~sl~fEkasVLfNiaal~sqia~~----~~r~t~~glK~A~~~Fq~AAG~f~~l~e 265 (665)
+. .-.|.|+ ||+| ++.++++.+++||++||||||||||+++|.. .++ +.+|+|.||++||+|||+|+||++
T Consensus 78 ~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal~s~~As~~~~~~~~-s~e~~K~A~~~fq~AAG~F~~l~e 156 (353)
T cd09243 78 ESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALWYTKHASKLAGKEDI-TEDEAKDVHKSLRTAAGIFQFVKE 156 (353)
T ss_pred ccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2378999 9999 6788999999999999999999999876644 344 349999999999999999999999
Q ss_pred hccCC------CCCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q psy12108 266 NFTNA------PSMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVK 339 (665)
Q Consensus 266 ~~~~~------ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~ 339 (665)
++.+. |+.||++++|.+|..+||||||||+|+||+.+ +++.++ |||+|+|++++|++|++.+++ ..
T Consensus 157 ~~l~~l~~~~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~---k~k~sl---iaKLA~q~a~~Y~~A~~~l~~--~~ 228 (353)
T cd09243 157 NYIPKLIEPAEKGSDLDPRVLEAYINQCTAEAQEVTVARAIEL---KHNAGL---ISALAYETAKLFQKADDSLSS--LD 228 (353)
T ss_pred hhcccccccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc---ccchHH---HHHHHHHHHHHHHHHHHHHHc--CC
Confidence 99753 88999999999999999999999999999974 345555 899999999999999999875 45
Q ss_pred CccchhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHH
Q psy12108 340 DYVPLSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLR 419 (665)
Q Consensus 340 ~~~~~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr 419 (665)
++++.+|..++++|..||+|+||||+|..+.+++ ++|+++++|+
T Consensus 229 ~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~------------------------------------k~GeaIa~L~ 272 (353)
T cd09243 229 PEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKD------------------------------------KCGEAIRSLQ 272 (353)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc------------------------------------hHHHHHHHHH
Confidence 6799999999999999999999999999987653 7999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcchhH-----HHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCCCCCCcccc
Q psy12108 420 SALLFHEESQRIYRMCRELRNKQA-----LFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQL 485 (665)
Q Consensus 420 ~A~~~~eeAlRl~~~c~~lr~~~~-----L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I~p~t~~~~ 485 (665)
.|...++++.+..+.+........ ....++.-.......+.+.++|+||...-.+|+-.|..+.++
T Consensus 273 ~A~~~~k~a~~~~k~y~~~~~~~~~~~~~~~~~~~~l~~~I~~~L~~aeKDNdfIYh~~VP~e~p~~e~k~ 343 (353)
T cd09243 273 ESEKLYNKAEALCKEYAKTKGPGTTAKPDQHLFFRKLGPLVKRTLEKCERENGFIYHQKVPDEVPQLELKA 343 (353)
T ss_pred HHHHHHHHHHHHHHhhhhccCccccccchhhHHHHHHHHHHHHHHHHHhhhhceeccccCCCCCCcccccc
Confidence 999999999887543322111100 011122222222334556777899988877776555444433
No 12
>KOG2220|consensus
Probab=100.00 E-value=3.2e-43 Score=403.66 Aligned_cols=345 Identities=28% Similarity=0.432 Sum_probs=284.3
Q ss_pred ccCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCCc
Q psy12108 118 IPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRSL 197 (665)
Q Consensus 118 i~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~~ 197 (665)
+|+|+|+|.++||..||..||...||+.+..+.++|.++..||.......+..++.+.|.+||.||++|+.||+......
T Consensus 6 ~~~~lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~~lR~~a~~~~~~~~~~~~l~~yy~qL~~l~~r~p~~~~~~ 85 (714)
T KOG2220|consen 6 LPIPLKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLEKLRNNANGVPKPSEGLEVLKRYYGQLCYLESRFPMSENEI 85 (714)
T ss_pred cCcccccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCcchhhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 88999999999999999999999999998887899999999998766666888999999999999999999997665555
Q ss_pred ceeEe-ecCCCC--CcccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHH-hhccCCCCC
Q psy12108 198 GIYFE-YDSLTG--VPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQ-ENFTNAPSM 273 (665)
Q Consensus 198 ~v~F~-~dslt~--~~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~-e~~~~~ps~ 273 (665)
.+ |+ +|.+.+ ....+.++.||++|||||||++|++||+.++|.+.+|+|.||.+||.|||||.|++ +.+...|++
T Consensus 86 ~~-F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf~~l~~~~~~~~~~~ 164 (714)
T KOG2220|consen 86 EE-FTWKDAFDSGAKKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAFRYLSRDALGVEPLV 164 (714)
T ss_pred cc-eeeeecccCCccceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhcHHhcCccccc
Confidence 55 99 899965 67889999999999999999999999999999999999999999999999999999 778899999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCccccCccchhHHHHHHHH
Q psy12108 274 DLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLSWVSLIQVK 353 (665)
Q Consensus 274 Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~~~~~~~~W~~~~~~K 353 (665)
|+++++|.++..+|+||||||+|.|++.++ +++.+ |||+++||..+|.+|+..+.. .+.+.+++.|..++..|
T Consensus 165 d~~~~~l~~~~~l~~AqAQec~f~ks~~d~---~~~~~---iaKis~q~~~fy~~Al~~~~~-~~~~~~~~~w~~~~~~k 237 (714)
T KOG2220|consen 165 DLSSLTLVFLRFLMLAQAQECFFYKSLTDN---PKPSI---IAKLSAQVVLFYEEALKAQIG-ARADRITKEWLTLVAAK 237 (714)
T ss_pred ccCHHHHHHHHHhhHHhhchheeehhhcCC---cchHH---HHHHHHHHHHHHHHHHHHHHH-hhhcccchhHHHHHHHH
Confidence 999999999999999999999999988643 35655 899999999999999999987 67889999999999999
Q ss_pred HHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q psy12108 354 KEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQRIYR 433 (665)
Q Consensus 354 ~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~~ 433 (665)
..+|.++++||++....+. ++.|+.+++|+.+...+.+|++...
T Consensus 238 ~~~~~~v~~~~~~~~~~e~------------------------------------~~~ge~i~~l~~~~~~l~~Aqk~~~ 281 (714)
T KOG2220|consen 238 FARFAGVAYYYQSLFLHEK------------------------------------SKDGEAIARLQLSLLMLSEAQKCSF 281 (714)
T ss_pred HHHHHHHHHHHHHHHhhhh------------------------------------hhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999976654 3789999999999999999998643
Q ss_pred HhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCC---CCCC---CccccCCCCCCCCCchhhhHHhhcCcc
Q psy12108 434 MCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPN---ITPS---TKFQLTLTPPDFAHLPVEDLFKQLGPV 507 (665)
Q Consensus 434 ~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~---I~p~---t~~~~~~~~P~f~~~~v~d~f~~LgP~ 507 (665)
= ...... -.++.....+....+++||.....+|. ++|. ...++. ...........++|+.+.|.
T Consensus 282 ~--~~~~~~-------~~~~~~~~~lk~a~kdNdFIyhe~vp~~~~l~~~~~~~~vkp~-~~~~l~~~~~~~lF~~lvp~ 351 (714)
T KOG2220|consen 282 G--EFTDVI-------ESLSSLEKALKEAKKDNDFIYHERVPKVSELPPLKAAQLVKPL-PWAVLLPSKAGDLFASLVPV 351 (714)
T ss_pred c--cchhHh-------hhhhHHHHHHHhhhcccchhhhcccccccccCCcchhHhhcCC-CcccccchhhhHHHHHHhhH
Confidence 1 122222 222333334445666788876655553 2232 122221 11112233456689999999
Q ss_pred ccccccccc
Q psy12108 508 AIFSAKHHW 516 (665)
Q Consensus 508 svf~~~~~~ 516 (665)
.++.+-..+
T Consensus 352 ~v~~a~s~y 360 (714)
T KOG2220|consen 352 EVAEALSAY 360 (714)
T ss_pred HHHHHHHHH
Confidence 887665443
No 13
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=100.00 E-value=4.2e-40 Score=359.04 Aligned_cols=268 Identities=21% Similarity=0.212 Sum_probs=217.2
Q ss_pred cCCCCCCCCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCC---------chhhhHHHHHHHHHHHHHhc
Q psy12108 119 PLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRD---------NSGISLLFQYYNQLYFIERR 189 (665)
Q Consensus 119 ~l~lK~T~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~---------~~~~~~L~~Yy~qL~~l~~r 189 (665)
|+-|-.|..|.|. .||.. ...++...+.=..-..||.++..+.|. ...++.|.+||.||..|+.+
T Consensus 3 ~~~lptTs~~sF~----~~~~~--~~~~~l~~~a~~~R~~lr~~lk~~k~~~~~~~~~~~~~~~~aL~~Ylp~L~~l~~~ 76 (413)
T cd09245 3 PFELPTTSSISFS----DFFNS--DSYPSLPLNATTARAVLRAALKAHKRTPPGSQASNLLTVVKALEEYLPYLLAIDAC 76 (413)
T ss_pred CccCCCCcccchh----hhcCC--CcccchhhHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHHHHHHHHHHHHcc
Confidence 4456678888886 44444 334455556656667788888655422 35679999999999999999
Q ss_pred cCCCCCC--cceeEe-ecCCCCC------cccccchhHHHHHHHHHHHHHHHHHHhhc---------C--------CCCh
Q psy12108 190 FFPPDRS--LGIYFE-YDSLTGV------PSCQRTIAFEKACVLFNMAAIYTQMAAKQ---------D--------RLTS 243 (665)
Q Consensus 190 f~~~~~~--~~v~F~-~dslt~~------~~~q~sl~fEkasVLfNiaal~sqia~~~---------~--------r~t~ 243 (665)
|+.++.. .+|.|+ +|+|.+. .+.+.++.||++|||||||++||++|... + +.++
T Consensus 77 ~~~~~~~l~~~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l~S~~A~~~l~~~~~~~~~~~is~~~~~~~~ 156 (413)
T cd09245 77 LSHDELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYALSNLARSILAPLGAYETDRSISDASRKQRD 156 (413)
T ss_pred CCcchhcccccceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccch
Confidence 9654323 368999 8988653 27889999999999999999999999872 2 6789
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhccC---------CCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhcc-------c---
Q psy12108 244 TGLDQAVDNFLRAAGTFTYLQENFTN---------APSMDLGPPMLDMLIQLMLAQARECLFQKLQLQT-------T--- 304 (665)
Q Consensus 244 ~glK~A~~~Fq~AAG~f~~l~e~~~~---------~ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~-------~--- 304 (665)
+|+|.||++||+|||||+||++++.. .|+.||+++++.+|..|||||||||+|.|++... .
T Consensus 157 e~lK~A~~~l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~a 236 (413)
T cd09245 157 ERLKAATKLLCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPG 236 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccC
Confidence 99999999999999999999998752 4578999999999999999999999999987521 0
Q ss_pred ---ccc--chhhHHHHHHHHHHHHHHHHHHHHhhcCccc---cCccchhHHHHHHHHHHHHHHHhhHHHhhhcccccccc
Q psy12108 305 ---EKC--DFQHMLELAQEAAQVAEVYMSLLSLITVPEV---KDYVPLSWVSLIQVKKEHYLALSHYYCASGLLTKSLAN 376 (665)
Q Consensus 305 ---~~~--~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~~---~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~ 376 (665)
.++ ++.+ |||||++++++|++|...++.... .+.++.+|..|+.+|..||+|+||||+|+++.+.+
T Consensus 237 p~~~k~~~s~sL---iAKLa~~~~~~y~~A~~~l~~~~~~~~~~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e~~--- 310 (413)
T cd09245 237 PPLPKVHPSAHL---LARLCLAASEHAESARALLSTPGSKRGSGEVSEELLRYLSDLRRVARALACKFLGIDAGENG--- 310 (413)
T ss_pred cccccccccHHH---HHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC---
Confidence 011 2244 899999999999999999886443 44689999999999999999999999999887754
Q ss_pred cchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12108 377 LSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQRI 431 (665)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl 431 (665)
++|+++++|+.|...++++...
T Consensus 311 ---------------------------------k~GeaIa~L~~A~~~L~~~~~~ 332 (413)
T cd09245 311 ---------------------------------KVGEAIGWLRAAKKELEDLKSP 332 (413)
T ss_pred ---------------------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 7999999999999988877654
No 14
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=100.00 E-value=1e-37 Score=335.46 Aligned_cols=253 Identities=17% Similarity=0.123 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcceeEe-ecCCCC---C-cccccchhHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Q psy12108 173 ISLLFQYYNQLYFIERRFFPPDRSLGIYFE-YDSLTG---V-PSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLD 247 (665)
Q Consensus 173 ~~~L~~Yy~qL~~l~~rf~~~~~~~~v~F~-~dslt~---~-~~~q~sl~fEkasVLfNiaal~sqia~~~~r~t~~glK 247 (665)
+..|..|+..|..+..++..-....++.|+ +|+|++ . ...+.++.||++|||||+|++|+++|....+. +|+|
T Consensus 60 l~~L~~~~~~L~~~~~~~~~~~l~~~i~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~~s~~A~~~~~~--e~~K 137 (346)
T cd09247 60 LPYLEGYLPALENLVNHRDKVQLNEQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAALRERASEVLPT--EDFK 137 (346)
T ss_pred HHHHHHHHHhhccCCccchHHhhcccCceeeecccCCCCCCceeeccchHHHHHHHHHHHHHHHHHHHHHhccH--HHHH
Confidence 455566666665555543100112478999 899986 2 24568999999999999999999999987664 8999
Q ss_pred HHHHHHHHHHHhHHHHHhhccC---------CCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHH
Q psy12108 248 QAVDNFLRAAGTFTYLQENFTN---------APSMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQE 318 (665)
Q Consensus 248 ~A~~~Fq~AAG~f~~l~e~~~~---------~ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAkl 318 (665)
.||++||+|||||+||.+++.. .+++||+++++.+|..+||||||||+|+||+.++. +.++ |||+
T Consensus 138 ~A~~~l~~AAG~f~~l~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~~~~---~~sl---iAKL 211 (346)
T cd09247 138 EAATHLRRAAGVFEFLAHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEEKGT---SPSL---LAKL 211 (346)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ChHH---HHHH
Confidence 9999999999999999998752 22679999999999999999999999999998653 5555 8999
Q ss_pred HHHHHHHHHHHHHhhcCccc-cCccchhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhcccccccccc
Q psy12108 319 AAQVAEVYMSLLSLITVPEV-KDYVPLSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKN 397 (665)
Q Consensus 319 A~qv~~~Y~~a~~~~~~~~~-~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (665)
|++++++|++|.+.+..... ...++.+|..++.+|..+|+|+||||+|..+.+..
T Consensus 212 a~~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~------------------------ 267 (346)
T cd09247 212 HYGATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEAG------------------------ 267 (346)
T ss_pred HHHHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------------
Confidence 99999999999999875321 13477999999999999999999999999887653
Q ss_pred ccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCC
Q psy12108 398 LILEFEPEDESQRKQLGVAHLRSALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNI 477 (665)
Q Consensus 398 ~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I 477 (665)
++|+++++|+.|...++++.+...... ......+.+.++. .+.+.++||||...-.+|+.
T Consensus 268 ------------k~GeaIa~L~~A~~~l~~~~~~~~~~~-~~~~~~~~~~i~~-------~l~~a~kdNd~IY~e~VP~~ 327 (346)
T cd09247 268 ------------HIGVAVGVLREALRNLKKKLPGSDISS-PVIFRDERAEVAT-------LLQKYEKENEVIYFEKVPDI 327 (346)
T ss_pred ------------CchHHHHHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHHH-------HHHHHHhccCeEEeecCCCc
Confidence 799999999999999999888532110 0112223333333 33445667888766655543
No 15
>KOG2220|consensus
Probab=99.95 E-value=3.1e-29 Score=288.42 Aligned_cols=531 Identities=20% Similarity=0.208 Sum_probs=391.5
Q ss_pred HHHHHHhhhhhhHhhHHHHHH----------HHhhhhhhhhhhhhhhhhHhHhhHHHHHHHHhhhccceeeccccccccc
Q psy12108 9 RAIAQMVTYGDSKHNQRNVAQ----------LQATTNRKLKETVALELSFVNSNLQLLKEQLAELNSSVELYQNDKRSLD 78 (665)
Q Consensus 9 ~~~~~~~q~~r~~~~~~~~~~----------~~a~~~~~~~~~v~lels~~~s~lq~l~~~l~~ln~~~~~~q~~~~~~~ 78 (665)
.+...+.|++| |++|.+. .|.+.|.++.+++..+|.|||++++++++|+++.+-..-.|++
T Consensus 27 ~~~y~~~~~~~---~~~i~~~~~lR~~a~~~~~~~~~~~~l~~yy~qL~~l~~r~p~~~~~~~~F~W~d~~~~~------ 97 (714)
T KOG2220|consen 27 QLSYGESQENR---NDAIEKLEKLRNNANGVPKPSEGLEVLKRYYGQLCYLESRFPMSENEIEEFTWKDAFDSG------ 97 (714)
T ss_pred HHhcCCchhhH---HHHHHHHHHHHhccccCCcchhhhHHHHHHHHHHHHHHHhcCcccccccceeeeecccCC------
Confidence 34556788888 8999888 3456788899999999999999999999999882222222222
Q ss_pred hhhhHHHHHHHHHHHhhcccCCCCCCCcccCCCCCccccccCCCCCCCCCCChHHHHHHHhhhcC-CChhhHHHHHHHHH
Q psy12108 79 SVESVYRLFSLMILFMLSTRDRKTPRSFKYFSKEPVMPMIPLGLKETKEIDVREPFKDFILEHYS-EDGTAYEDSVSEFM 157 (665)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pmi~l~lK~T~~vD~~~~L~~~I~~~y~-e~~~~~~~~i~~l~ 157 (665)
...+||++|+|+++..+++..+|...|..||. ++++.|..+|..|+
T Consensus 98 ---------------------------------~~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq 144 (714)
T KOG2220|consen 98 ---------------------------------AKKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQ 144 (714)
T ss_pred ---------------------------------ccceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 35799999999999999999999999999999 89999999999999
Q ss_pred HHHHHhcCCCCCchhhhHHHHHHHHHHHHHhccCCCCCCcceeEeecCCCCCcccccchhHHHHHHHHHHHHHHHHHHhh
Q psy12108 158 DMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRSLGIYFEYDSLTGVPSCQRTIAFEKACVLFNMAAIYTQMAAK 237 (665)
Q Consensus 158 ~LR~~~~~~~~~~~~~~~L~~Yy~qL~~l~~rf~~~~~~~~v~F~~dslt~~~~~q~sl~fEkasVLfNiaal~sqia~~ 237 (665)
..|++.+++.++..+.+.+.+ |++++....+|.++.+..++.| |+++++++..+.-..+++++++||.+|+++++++.
T Consensus 145 ~aagaf~~l~~~~~~~~~~~d-~~~~~l~~~~~l~~AqAQec~f-~ks~~d~~~~~~iaKis~q~~~fy~~Al~~~~~~~ 222 (714)
T KOG2220|consen 145 AAAGAFRYLSRDALGVEPLVD-LSSLTLVFLRFLMLAQAQECFF-YKSLTDNPKPSIIAKLSAQVVLFYEEALKAQIGAR 222 (714)
T ss_pred HHHHHHHhhcHHhcCcccccc-cCHHHHHHHHHhhHHhhchhee-ehhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 8999999999988888888888 99999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHH
Q psy12108 238 QDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQ 317 (665)
Q Consensus 238 ~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAk 317 (665)
.+|.+.+++..+...|+.++|++.|+...+.+.++.|+.+-.+-.+..+||++||+|.++. ..+-.+. ...+.+-=+
T Consensus 223 ~~~~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e~~~~ge~i~~l~~~~~~l~~Aqk~~~~~-~~~~~~~--~~~~~~~lk 299 (714)
T KOG2220|consen 223 ADRITKEWLTLVAAKFARFAGVAYYYQSLFLHEKSKDGEAIARLQLSLLMLSEAQKCSFGE-FTDVIES--LSSLEKALK 299 (714)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc-chhHhhh--hhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999961 1111111 100101011
Q ss_pred HHHHHHHH-HHHHHH---hhcC-ccccCccchhHHHHHHHHHHH-HHHHhhHHHhhhccccc----------ccccchhh
Q psy12108 318 EAAQVAEV-YMSLLS---LITV-PEVKDYVPLSWVSLIQVKKEH-YLALSHYYCASGLLTKS----------LANLSSTA 381 (665)
Q Consensus 318 lA~qv~~~-Y~~a~~---~~~~-~~~~~~~~~~W~~~~~~K~~~-f~A~A~y~~a~~l~~~~----------~~~~~~~~ 381 (665)
+|..=.++ |-+..- .+.. .+...+.|-.|...+..|..+ |.++++++.+.++...+ ..++....
T Consensus 300 ~a~kdNdFIyhe~vp~~~~l~~~~~~~~vkp~~~~~l~~~~~~~lF~~lvp~~v~~a~s~yse~ka~ll~~~~~~~~~~~ 379 (714)
T KOG2220|consen 300 EAKKDNDFIYHERVPKVSELPPLKAAQLVKPLPWAVLLPSKAGDLFASLVPVEVAEALSAYSEEKADLLRESIARLREAN 379 (714)
T ss_pred hhhcccchhhhcccccccccCCcchhHhhcCCCcccccchhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111111 221111 1111 012223455566666666655 66666655554443322 11112111
Q ss_pred h--hhhhhcccccccccccc--------------------ccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy12108 382 Q--TVLSYLHIPQENKKNLI--------------------LEFEPEDESQRKQLGVAHLRSALLFHEESQRIYRMCRELR 439 (665)
Q Consensus 382 ~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~~~c~~lr 439 (665)
+ ..+-..+..+|...... ...+.+...++..+.+.+-.......+...+.+..|+++|
T Consensus 380 q~l~~~l~s~~l~p~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~l~~ea~~~~~lr 459 (714)
T KOG2220|consen 380 QLLNSVLASLNLDPLALSDLSGNKSLPESFKEKSAAVRRGLSNLQQELSELRELKKKVREILDEIEEALDEEAALDNKLR 459 (714)
T ss_pred HHHHHHHHHhccChhhhhhhhcccccchhhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1 11112222223221110 1122334556666666666666666666666888999999
Q ss_pred chhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCCCCCCCccccCCCCCCCCCchhhh---HHhhcC-cccccccccc
Q psy12108 440 NKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVED---LFKQLG-PVAIFSAKHH 515 (665)
Q Consensus 440 ~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~I~p~t~~~~~~~~P~f~~~~v~d---~f~~Lg-P~svf~~~~~ 515 (665)
.+...+-++....+....-|.++.+..++.+-..++++.+...+......|.+...+..+ .+.+++ |.+.......
T Consensus 460 ~~~~~~~~~~~s~~~~~~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~ll~~~~~e~~~~lp~~~~~~~~~~~~~~ 539 (714)
T KOG2220|consen 460 AKLGQRWTRTRSSELTLALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRLLSLPPPELQPSLPSLDGPLNPNSDEIV 539 (714)
T ss_pred hhhcccccccccHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhhhcCCCchhhhhcCCCCCCCCcchHHHH
Confidence 988888777777777777888899999999988999998888887777777766666666 566665 7777777666
Q ss_pred cccceeEEeccCCCCCcceeEEEEcCCCeEEE-EeCCCChhhhcCCCCCCEEEEECCE--ecCCCChHHHHHHHHhh
Q psy12108 516 WTAPRSIQLQRANNSDTGFGFSVRGDAPVIVA-SVDSGSLAQFGGMKDGDFIVAIGDR--DVKWSPHEEVVQLIKDA 589 (665)
Q Consensus 516 ~~~~r~v~l~rg~~~~~g~Gf~l~g~~~v~V~-~V~pgspA~~aGLk~GD~Il~VnG~--~v~~~~~~evv~~ik~~ 589 (665)
|...+.+...+ +.+..|+.+++..++.|. ....++-+.-+|+..||.+++++|+ ++.|+.|..|+....-.
T Consensus 540 ~~~k~~l~~~~---e~k~~r~~L~~~l~~~i~~ddi~~sl~~~~~~~e~dl~~~~l~k~~~l~~~i~~nv~~q~~~l 613 (714)
T KOG2220|consen 540 RQLKGYLDDLE---ELKAEREKLEGDLKVDIFKDDILNSLAIHGGIKEEDLFVSELGKFDPLKWLIHQNVVKQESLL 613 (714)
T ss_pred HHHHHHHHHHH---HHHHHHHhhhhhhHHHHHhcccchhhhhcccccHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 65555555555 355788888888777776 5667777777899999999999995 99999999988866543
No 16
>KOG3550|consensus
Probab=99.45 E-value=4.2e-13 Score=123.10 Aligned_cols=153 Identities=27% Similarity=0.436 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHH-hhhhcchhhhhhhccCCCCCCCCccccCCCCCCCCCch
Q psy12108 418 LRSALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEM-YADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLP 496 (665)
Q Consensus 418 Lr~A~~~~eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~-y~~~~~edd~~~~~~ap~I~p~t~~~~~~~~P~f~~~~ 496 (665)
..+|+.++|..++-..+ ...+.+.||.||+...-.+..+ |+. +++.+ ||+...+.....+. +
T Consensus 14 v~r~ielleklq~sgev--p~~kl~alq~vlqsef~~avrevye~------vyeti---di~~s~eira~ata----k-- 76 (207)
T KOG3550|consen 14 VQRAIELLEKLQRSGEV--PPQKLQALQKVLQSEFCTAVREVYEH------VYETI---DIDGSPEIRAAATA----K-- 76 (207)
T ss_pred HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhc---ccCCChHHhhhhhh----H--
Confidence 46777777665554331 1125678999988887766665 433 23333 23222121111111 0
Q ss_pred hhhHHhhcCcccccccccccccceeEEeccCCCCCcceeEEEEcCC----CeEEEEeCCCChhhh-cCCCCCCEEEEECC
Q psy12108 497 VEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDA----PVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571 (665)
Q Consensus 497 v~d~f~~LgP~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g~~----~v~V~~V~pgspA~~-aGLk~GD~Il~VnG 571 (665)
.-...|.+.....-||.|.+.| .++|+||++-|++ |++|+.|+|||.|++ +||+.||++++|||
T Consensus 77 --------atvaafaaseghahprvvelpk---tdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvng 145 (207)
T KOG3550|consen 77 --------ATVAAFAASEGHAHPRVVELPK---TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 145 (207)
T ss_pred --------HHHHHHHHhccCCCCceeecCc---cccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecc
Confidence 1122444555556789999999 4679999999885 999999999999999 99999999999999
Q ss_pred EecCCCChHHHHHHHHhhCCceeEEEE
Q psy12108 572 RDVKWSPHEEVVQLIKDAGKCLSLKLV 598 (665)
Q Consensus 572 ~~v~~~~~~evv~~ik~~g~~v~L~V~ 598 (665)
++|++-.|+.++++++..-+.|.|.|.
T Consensus 146 vsvege~hekavellkaa~gsvklvvr 172 (207)
T KOG3550|consen 146 VSVEGEHHEKAVELLKAAVGSVKLVVR 172 (207)
T ss_pred eeecchhhHHHHHHHHHhcCcEEEEEe
Confidence 999999999999999999888888775
No 17
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.33 E-value=4.6e-12 Score=107.78 Aligned_cols=75 Identities=37% Similarity=0.596 Sum_probs=68.1
Q ss_pred EEeccCCCCCcceeEEEEcCC-----CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEE
Q psy12108 522 IQLQRANNSDTGFGFSVRGDA-----PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLK 596 (665)
Q Consensus 522 v~l~rg~~~~~g~Gf~l~g~~-----~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~ 596 (665)
|++.|. ...+|||.+.++. +++|..|.|+|||+++||++||.|++|||+++.++++.+++.+++.+++.|+|+
T Consensus 2 v~l~k~--~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 2 VTLEKS--GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEES--TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred EEEEeC--CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 678886 4689999998642 789999999999999999999999999999999999999999999998899988
Q ss_pred EE
Q psy12108 597 LV 598 (665)
Q Consensus 597 V~ 598 (665)
|.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 18
>KOG3551|consensus
Probab=99.14 E-value=1.8e-10 Score=120.32 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=88.1
Q ss_pred cceeEEeccCCCCCcceeEEEEcCC----CeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCc
Q psy12108 518 APRSIQLQRANNSDTGFGFSVRGDA----PVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592 (665)
Q Consensus 518 ~~r~v~l~rg~~~~~g~Gf~l~g~~----~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~ 592 (665)
..|.|++.|. +.+|+|++|.|+. |+.|++|.+|-.|++ ..|..||.|++|||.+..+.+|+|+|+.+|..|.+
T Consensus 84 ~~R~V~V~K~--d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGke 161 (506)
T KOG3551|consen 84 AERRVRVVKQ--DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKE 161 (506)
T ss_pred ccceeEEEEe--cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCce
Confidence 3488999998 7899999999986 999999999999999 55999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCcccCCCCCCCCCcccc
Q psy12108 593 LSLKLVTPMHKNNNVHHSHNSRIKGTESI 621 (665)
Q Consensus 593 v~L~V~~~~~~~~~~~~~~~~~~~g~~s~ 621 (665)
|.++|.-..+...|.+..+..++-|+...
T Consensus 162 V~levKy~REvtPy~kk~sivs~vgWe~~ 190 (506)
T KOG3551|consen 162 VLLEVKYMREVTPYFKKESIVSEVGWEDP 190 (506)
T ss_pred eeeeeeeehhcchhhccCccccccCcCCC
Confidence 99999877666667666665555555554
No 19
>KOG3549|consensus
Probab=99.12 E-value=2.1e-10 Score=118.20 Aligned_cols=87 Identities=28% Similarity=0.493 Sum_probs=77.4
Q ss_pred cccceeEEeccCCCCCcceeEEEEcCC----CeEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCChHHHHHHHHhhC
Q psy12108 516 WTAPRSIQLQRANNSDTGFGFSVRGDA----PVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590 (665)
Q Consensus 516 ~~~~r~v~l~rg~~~~~g~Gf~l~g~~----~v~V~~V~pgspA~~aG-Lk~GD~Il~VnG~~v~~~~~~evv~~ik~~g 590 (665)
....|+|+|.|. .-+|+|++|.||. |++|+.|.++-.|+..| |-+||-|+.|||+.|...+|+|||++++++|
T Consensus 52 ~s~eRtVtirRQ--~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG 129 (505)
T KOG3549|consen 52 ESKERTVTIRRQ--KVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG 129 (505)
T ss_pred cCCceeEEEEee--ecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC
Confidence 346799999998 5699999999986 99999999999999955 7899999999999999999999999999999
Q ss_pred CceeEEEEcCCCCC
Q psy12108 591 KCLSLKLVTPMHKN 604 (665)
Q Consensus 591 ~~v~L~V~~~~~~~ 604 (665)
+.|+|+|.-....+
T Consensus 130 deVtlTV~~lr~Ap 143 (505)
T KOG3549|consen 130 DEVTLTVKHLRAAP 143 (505)
T ss_pred CEEEEEeHhhhcCc
Confidence 99999997444333
No 20
>KOG3209|consensus
Probab=99.09 E-value=2.7e-10 Score=126.33 Aligned_cols=90 Identities=29% Similarity=0.492 Sum_probs=78.1
Q ss_pred cceeEEeccCCCCCcceeEEEEcCC---CeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCce
Q psy12108 518 APRSIQLQRANNSDTGFGFSVRGDA---PVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCL 593 (665)
Q Consensus 518 ~~r~v~l~rg~~~~~g~Gf~l~g~~---~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v 593 (665)
.+..|.|+|+ +++||||.|.... +.-|..|++||||++ +.|++||+|++|||+++.+++|.++|++||.+|.+|
T Consensus 753 ~~yDV~lhR~--ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsV 830 (984)
T KOG3209|consen 753 GPYDVVLHRK--ENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSV 830 (984)
T ss_pred CCeeeEEecc--cCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceE
Confidence 3677999998 8899999987532 444999999999999 679999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCcccC
Q psy12108 594 SLKLVTPMHKNNNVHH 609 (665)
Q Consensus 594 ~L~V~~~~~~~~~~~~ 609 (665)
+|+|+.+.+......+
T Consensus 831 tLtIip~ee~~~~~~~ 846 (984)
T KOG3209|consen 831 TLTIIPPEEAGPPTSM 846 (984)
T ss_pred EEEEcChhccCCCCCC
Confidence 9999988765544443
No 21
>PRK11186 carboxy-terminal protease; Provisional
Probab=99.04 E-value=2.2e-09 Score=123.87 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=114.7
Q ss_pred cccccCCCCcHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhhhcchhhhhhhccCCC
Q psy12108 397 NLILEFEPEDESQRKQLGVAHLRSALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPN 476 (665)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~kahLr~A~~~~eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~~~~edd~~~~~~ap~ 476 (665)
++....|+++.++...+++..++..... +.+++ .+-+.+.+.|.+.+...+.+..+...+|-+..++
T Consensus 147 dr~~~~w~~~~~el~~~W~k~vk~~~l~----~~~~g-----~~w~~i~~~l~krY~~~l~~~~~~~~~d~~~~~i---- 213 (667)
T PRK11186 147 DRSKAPWPKDEAELNELWDQRVKYDALN----LKLTG-----KTWPEIKETLTKRYNFAIKRLTQTNSEDVFQLAM---- 213 (667)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHHHHhh----hhhcC-----CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHH----
Confidence 3445679999999999999888876663 23333 3444556667777776666655544444333332
Q ss_pred CCCCCccccCCCCCCCCCchhhhHHhhcCcccccccccccccceeEEeccCCCCCcceeEEEEcCC-CeEEEEeCCCChh
Q psy12108 477 ITPSTKFQLTLTPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDA-PVIVASVDSGSLA 555 (665)
Q Consensus 477 I~p~t~~~~~~~~P~f~~~~v~d~f~~LgP~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g~~-~v~V~~V~pgspA 555 (665)
..|+..++||+.|.......... ..+ .+ ..+|+|..+.... .++|..|.|||||
T Consensus 214 ---------------------~~m~~~lDphT~Y~sp~e~e~f~-~~~-~~--~~~GIGa~l~~~~~~~~V~~vipGsPA 268 (667)
T PRK11186 214 ---------------------NAFAREIDPHTSYLSPRNAEQFN-TEM-NL--SLEGIGAVLQMDDDYTVINSLVAGGPA 268 (667)
T ss_pred ---------------------HHHHhCCCCCccccChHHHHHhh-hcc-CC--ceeEEEEEEEEeCCeEEEEEccCCChH
Confidence 23445555666554443322211 123 23 5679999987544 5889999999999
Q ss_pred hhc-CCCCCCEEEEEC--C---EecCCCChHHHHHHHHhh-CCceeEEEEcC
Q psy12108 556 QFG-GMKDGDFIVAIG--D---RDVKWSPHEEVVQLIKDA-GKCLSLKLVTP 600 (665)
Q Consensus 556 ~~a-GLk~GD~Il~Vn--G---~~v~~~~~~evv~~ik~~-g~~v~L~V~~~ 600 (665)
+++ ||++||+|++|| | .++.+|+.++++.+|++. |..|+|+|.+.
T Consensus 269 ~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 269 AKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred HHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 996 999999999999 4 467789999999999986 67899999863
No 22
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.04 E-value=1.7e-09 Score=91.56 Aligned_cols=76 Identities=34% Similarity=0.650 Sum_probs=66.7
Q ss_pred eeEEeccCCCCCcceeEEEEcCC----CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeE
Q psy12108 520 RSIQLQRANNSDTGFGFSVRGDA----PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSL 595 (665)
Q Consensus 520 r~v~l~rg~~~~~g~Gf~l~g~~----~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L 595 (665)
+.+.+.++ ...+|||.+.+.. +++|..|.+++||+++||++||+|++|||.++..++++++...++..+..++|
T Consensus 2 ~~~~l~~~--~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l 79 (82)
T cd00992 2 RTVTLRKD--PGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTL 79 (82)
T ss_pred EEEEEEeC--CCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEE
Confidence 45777776 3678999998764 79999999999999999999999999999999999999999999987667777
Q ss_pred EE
Q psy12108 596 KL 597 (665)
Q Consensus 596 ~V 597 (665)
+|
T Consensus 80 ~v 81 (82)
T cd00992 80 TV 81 (82)
T ss_pred EE
Confidence 65
No 23
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.01 E-value=1.7e-09 Score=88.91 Aligned_cols=65 Identities=40% Similarity=0.651 Sum_probs=59.7
Q ss_pred ceeEEEEcCC--CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhC-CceeEEE
Q psy12108 533 GFGFSVRGDA--PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG-KCLSLKL 597 (665)
Q Consensus 533 g~Gf~l~g~~--~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g-~~v~L~V 597 (665)
++||.+.+.. +++|..|.+++||+.+||++||+|++|||.++.++++.++.++++... ..++|+|
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 6899998775 899999999999999999999999999999999999999999999874 6888876
No 24
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.87 E-value=2.2e-08 Score=84.95 Aligned_cols=77 Identities=35% Similarity=0.545 Sum_probs=66.8
Q ss_pred eEEeccCCCCCcceeEEEEcC----CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEE
Q psy12108 521 SIQLQRANNSDTGFGFSVRGD----APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLK 596 (665)
Q Consensus 521 ~v~l~rg~~~~~g~Gf~l~g~----~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~ 596 (665)
.+.+.+. ...+||.+... .+++|..|.+++||+++||++||.|++|||+++.++++.++...++..+..+.|+
T Consensus 4 ~~~~~~~---~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 4 LVELEKG---GGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred EEEEEEC---CCcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 4566664 26899998865 5899999999999999999999999999999999999999999998877788888
Q ss_pred EEcC
Q psy12108 597 LVTP 600 (665)
Q Consensus 597 V~~~ 600 (665)
+.+.
T Consensus 81 i~r~ 84 (85)
T smart00228 81 VLRG 84 (85)
T ss_pred EEeC
Confidence 8764
No 25
>KOG3209|consensus
Probab=98.79 E-value=9.8e-09 Score=114.23 Aligned_cols=78 Identities=32% Similarity=0.517 Sum_probs=69.6
Q ss_pred cceeEEeccCCCCCcceeEEEEcCC----CeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCc
Q psy12108 518 APRSIQLQRANNSDTGFGFSVRGDA----PVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592 (665)
Q Consensus 518 ~~r~v~l~rg~~~~~g~Gf~l~g~~----~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~ 592 (665)
...+|.|.||.+ ||||+|+|+. +.+|-++.++|||.+ +.|++||+|++|||++.++++|+.++++|++.|..
T Consensus 898 ~~~~VelErG~k---GFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~ 974 (984)
T KOG3209|consen 898 DLYTVELERGAK---GFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRR 974 (984)
T ss_pred CeeEEEeecccc---ccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeE
Confidence 456799999877 9999999986 899999999999999 77999999999999999999999999999996666
Q ss_pred eeEEEE
Q psy12108 593 LSLKLV 598 (665)
Q Consensus 593 v~L~V~ 598 (665)
|.+.+.
T Consensus 975 vll~Lr 980 (984)
T KOG3209|consen 975 VLLLLR 980 (984)
T ss_pred EEEEec
Confidence 655543
No 26
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=2e-08 Score=110.53 Aligned_cols=101 Identities=26% Similarity=0.361 Sum_probs=85.5
Q ss_pred hhhHHhhc-CcccccccccccccceeEEeccCCCCCcceeEEEEc-C-CCeEEEEeCCCChhhhcCCCCCCEEEEECCEe
Q psy12108 497 VEDLFKQL-GPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRG-D-APVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573 (665)
Q Consensus 497 v~d~f~~L-gP~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g-~-~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~ 573 (665)
...|+.++ +||+.|.........+. =+.+ +.+|+|..+.. . ..+.|.++.+|+||+++||++||.|++|||.+
T Consensus 68 i~g~ls~l~Dp~s~y~~~e~~~~~~~--~~~~--~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~ 143 (406)
T COG0793 68 IEGMLSSLGDPHSTYLDPEDAAEFRT--DTSG--EFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKS 143 (406)
T ss_pred HHHHHHhcCCCcccccCHHHHHHhhh--hccc--cccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEE
Confidence 56688888 59998888877654333 2333 68899999886 3 58899999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHhh-CCceeEEEEcCC
Q psy12108 574 VKWSPHEEVVQLIKDA-GKCLSLKLVTPM 601 (665)
Q Consensus 574 v~~~~~~evv~~ik~~-g~~v~L~V~~~~ 601 (665)
+.+++.++++..|++. |+.|+|++.+..
T Consensus 144 ~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 144 VGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred ccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 9999999999999987 779999999873
No 27
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.75 E-value=4.8e-08 Score=83.46 Aligned_cols=69 Identities=35% Similarity=0.504 Sum_probs=60.6
Q ss_pred cceeEEEEc-CCCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh-CCceeEEEEcC
Q psy12108 532 TGFGFSVRG-DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTP 600 (665)
Q Consensus 532 ~g~Gf~l~g-~~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~ 600 (665)
.++|+.+.. ..+++|..|.+++||+++||++||+|++|||.++.++++.++...++.. |..+.+++.+.
T Consensus 2 ~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 478888775 3479999999999999999999999999999999999889999988764 66889999875
No 28
>KOG3606|consensus
Probab=98.74 E-value=1.2e-07 Score=95.22 Aligned_cols=91 Identities=18% Similarity=0.325 Sum_probs=76.6
Q ss_pred ccccceeEEeccCCCCCcceeEEEEcC-------------CCeEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCChH
Q psy12108 515 HWTAPRSIQLQRANNSDTGFGFSVRGD-------------APVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHE 580 (665)
Q Consensus 515 ~~~~~r~v~l~rg~~~~~g~Gf~l~g~-------------~~v~V~~V~pgspA~~aG-Lk~GD~Il~VnG~~v~~~~~~ 580 (665)
.+...|.|+|.|.. .+..+||.|+.+ .|+||++++|||.|+..| |-+.|.|++|||+.|.+.+.+
T Consensus 155 vPEtHRRVRL~khG-~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLD 233 (358)
T KOG3606|consen 155 VPETHRRVRLHKHG-SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLD 233 (358)
T ss_pred cchhhhheehhhcC-CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHH
Confidence 34456788999875 478999999965 289999999999999966 578999999999999999999
Q ss_pred HHHHHHHhhCCceeEEEEcCCCCCCc
Q psy12108 581 EVVQLIKDAGKCLSLKLVTPMHKNNN 606 (665)
Q Consensus 581 evv~~ik~~g~~v~L~V~~~~~~~~~ 606 (665)
+|..++-.....+.++|.+....+..
T Consensus 234 QVTDMMvANshNLIiTVkPANQRnnv 259 (358)
T KOG3606|consen 234 QVTDMMVANSHNLIITVKPANQRNNV 259 (358)
T ss_pred HHHHHHhhcccceEEEecccccccce
Confidence 99999998888888888876554433
No 29
>KOG3552|consensus
Probab=98.73 E-value=1.6e-08 Score=115.21 Aligned_cols=96 Identities=33% Similarity=0.628 Sum_probs=79.7
Q ss_pred hHHhhcCccccccccc--ccccceeEEeccCCCCCcceeEEEEcCCCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCC
Q psy12108 499 DLFKQLGPVAIFSAKH--HWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576 (665)
Q Consensus 499 d~f~~LgP~svf~~~~--~~~~~r~v~l~rg~~~~~g~Gf~l~g~~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~ 576 (665)
+++..+++...+.+.. +|. ||.|.++|. ..-|||| .-+.|++|..|.+|||+. +.|.+||+|+.|||.+|++
T Consensus 35 ~y~~~~~~~~~~~~~~~i~~~-pr~vq~~r~--~~lGFgf--vagrPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~d 108 (1298)
T KOG3552|consen 35 YYINHLNKTTTYEAPECIRWE-PRQVQLQRN--ASLGFGF--VAGRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKD 108 (1298)
T ss_pred hHHhhcCCccCcCCCccccCc-chhhhhhcc--cccccee--ecCCceEEEEecCCCCcc-ccccCCCeEEEecCccccc
Confidence 4556666655554433 464 999999997 3455555 444899999999999998 7799999999999999999
Q ss_pred CChHHHHHHHHhhCCceeEEEEcC
Q psy12108 577 SPHEEVVQLIKDAGKCLSLKLVTP 600 (665)
Q Consensus 577 ~~~~evv~~ik~~g~~v~L~V~~~ 600 (665)
..++.|++++|.|...|.|+|+++
T Consensus 109 aprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 109 APRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred ccHHHHHHHHHHHhhhcceEEecc
Confidence 999999999999999999999986
No 30
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.73 E-value=3.8e-08 Score=83.95 Aligned_cols=68 Identities=31% Similarity=0.539 Sum_probs=55.8
Q ss_pred ceeEEEEcCC---CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCC
Q psy12108 533 GFGFSVRGDA---PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMH 602 (665)
Q Consensus 533 g~Gf~l~g~~---~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~ 602 (665)
++|+.+.... ++.|..|.++|||+++||++||+|++|||.++. +..++...+... |+.++|+|.|.+.
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 5777766543 799999999999999999999999999999996 447888888643 7799999998654
No 31
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.63 E-value=8.2e-08 Score=105.61 Aligned_cols=101 Identities=23% Similarity=0.340 Sum_probs=78.1
Q ss_pred hhhHHhhcC-cccccccccccccceeEEeccCCCCCcceeEEEEcC-------CCeEEEEeCCCChhhhcCCCCCCEEEE
Q psy12108 497 VEDLFKQLG-PVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGD-------APVIVASVDSGSLAQFGGMKDGDFIVA 568 (665)
Q Consensus 497 v~d~f~~Lg-P~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g~-------~~v~V~~V~pgspA~~aGLk~GD~Il~ 568 (665)
..+|+..|+ ||+.+.........+. -.++ ...|+|+.+... .+++|..|.+||||+++||++||+|++
T Consensus 53 i~~ml~~L~D~hs~y~~~~~~~~~~~--~~~~--~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~ 128 (389)
T PLN00049 53 IRKMLATLDDPFTRFLEPEKFKSLRS--GTKG--AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILA 128 (389)
T ss_pred HHHHHhhCCCCcccCcCHHHHHHHHH--hccC--CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEE
Confidence 567888884 8887765544332221 1234 567999987632 278999999999999999999999999
Q ss_pred ECCEecCCCChHHHHHHHHhh-CCceeEEEEcCC
Q psy12108 569 IGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTPM 601 (665)
Q Consensus 569 VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~~ 601 (665)
|||++|.+++..++..++++. |..|.|+|.+.+
T Consensus 129 InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 129 IDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred ECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 999999999888999988764 668899887654
No 32
>KOG3553|consensus
Probab=98.51 E-value=1.3e-07 Score=81.49 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=56.9
Q ss_pred ceeEEEEcC--------------CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEE
Q psy12108 533 GFGFSVRGD--------------APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598 (665)
Q Consensus 533 g~Gf~l~g~--------------~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~ 598 (665)
-+||.|.|+ .+++|..|.+||||+.|||+.+|.|+.|||-+..-++|+.++..|+. ...+.+.|.
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVa 114 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVA 114 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHH
Confidence 379999876 28999999999999999999999999999999999999999999988 334555554
Q ss_pred c
Q psy12108 599 T 599 (665)
Q Consensus 599 ~ 599 (665)
+
T Consensus 115 R 115 (124)
T KOG3553|consen 115 R 115 (124)
T ss_pred h
Confidence 3
No 33
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.43 E-value=4.6e-07 Score=97.80 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=74.8
Q ss_pred hhhHHhhcC-cccccccccccccceeEEeccCCCCCcceeEEEEcC-CCeEEEEeCCCChhhhcCCCCCCEEEEECCEec
Q psy12108 497 VEDLFKQLG-PVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGD-APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574 (665)
Q Consensus 497 v~d~f~~Lg-P~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g~-~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v 574 (665)
..+|+..++ ||+.+.........+. -..+ ...++|+.+... .+++|..|.++|||+++||++||+|++|||.++
T Consensus 19 l~~m~~~l~D~h~~~~~~~~~~~~~~--~~~~--~~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v 94 (334)
T TIGR00225 19 IKGMLASLNDPYTRYLSPETAKSFSE--TTSG--SLEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSV 94 (334)
T ss_pred HHHHHHhCCCCCccccCHHHHHHHHH--hccC--ceEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEEC
Confidence 345676774 8875554333222110 1123 456899988754 368999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhh-CCceeEEEEcCCC
Q psy12108 575 KWSPHEEVVQLIKDA-GKCLSLKLVTPMH 602 (665)
Q Consensus 575 ~~~~~~evv~~ik~~-g~~v~L~V~~~~~ 602 (665)
.+++..++...+++. |..+.++|.+.+.
T Consensus 95 ~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 95 AGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred CCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 998878888888764 6789999987643
No 34
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.40 E-value=1.3e-06 Score=73.45 Aligned_cols=67 Identities=31% Similarity=0.453 Sum_probs=55.0
Q ss_pred ceeEEEEcC-CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh-CCceeEEEEcCC
Q psy12108 533 GFGFSVRGD-APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTPM 601 (665)
Q Consensus 533 g~Gf~l~g~-~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~~ 601 (665)
.+||..... .++.|..|.+++||+++||++||.|++|||.++.+ +.++...+... +..+.+++.+.+
T Consensus 2 ~~~~~~g~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 2 ILGFVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred eeeEeccCCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECC
Confidence 467765533 36899999999999999999999999999999985 47888888775 567888887654
No 35
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.31 E-value=1.8e-06 Score=73.11 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=50.0
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPM 601 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~ 601 (665)
++.|..|.++|||+++||++||+|++|||.++.. +.++...+... |..+.+++.+.+
T Consensus 11 Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 11 GVVIVGVIVGSPAENAVLHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred cEEEEEECCCChHHhcCCCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECC
Confidence 6889999999999999999999999999999984 47888888864 678899888754
No 36
>KOG3651|consensus
Probab=98.27 E-value=3.2e-06 Score=86.37 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=72.1
Q ss_pred ceeEEeccCCCCCcceeEEEEcCCC----eEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCce
Q psy12108 519 PRSIQLQRANNSDTGFGFSVRGDAP----VIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCL 593 (665)
Q Consensus 519 ~r~v~l~rg~~~~~g~Gf~l~g~~~----v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v 593 (665)
+.+|.++|+ +.+-+|++|.||.| ++|..|..++||++ +.++.||.|++|||+.|++.+..+|.++|+-.-++|
T Consensus 5 ~~~v~ltKD--~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV 82 (429)
T KOG3651|consen 5 SETVELTKD--EKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEV 82 (429)
T ss_pred cCcEEEeec--cccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccce
Confidence 456899997 66789999999873 57999999999999 779999999999999999999999999999988899
Q ss_pred eEEEEcCCC
Q psy12108 594 SLKLVTPMH 602 (665)
Q Consensus 594 ~L~V~~~~~ 602 (665)
.+..-....
T Consensus 83 ~IhyNKL~a 91 (429)
T KOG3651|consen 83 KIHYNKLEA 91 (429)
T ss_pred EEEehhccc
Confidence 988865443
No 37
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.24 E-value=3.9e-06 Score=70.79 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=49.5
Q ss_pred eeEEEEcC-CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcCC
Q psy12108 534 FGFSVRGD-APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPM 601 (665)
Q Consensus 534 ~Gf~l~g~-~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~~ 601 (665)
+|+.+... .++.|..|.++|||+++||++||+|++|||.++.. +.+++..+ ..+..+.+++.+.+
T Consensus 3 ~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 56666543 36899999999999999999999999999999975 33443333 23668888887654
No 38
>KOG3580|consensus
Probab=98.17 E-value=4.7e-06 Score=91.64 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=71.1
Q ss_pred eeEEeccCCCCCcceeEEEEcCC----------CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh
Q psy12108 520 RSIQLQRANNSDTGFGFSVRGDA----------PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA 589 (665)
Q Consensus 520 r~v~l~rg~~~~~g~Gf~l~g~~----------~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~ 589 (665)
.+|+|.|.+ ..|||+.|.|+. .++|+.|.|||||+ +.|+.||.|+-|||+++.+..|.=+++.|+.+
T Consensus 10 hTvTL~kdp--~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQqLrks 86 (1027)
T KOG3580|consen 10 HTVTLQKDP--KRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQQLRKS 86 (1027)
T ss_pred heeeeecCC--CCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHHHHHhh
Confidence 568999984 589999998873 47899999999998 67999999999999999999999999999999
Q ss_pred CCceeEEEEcCCCC
Q psy12108 590 GKCLSLKLVTPMHK 603 (665)
Q Consensus 590 g~~v~L~V~~~~~~ 603 (665)
|....++|.++...
T Consensus 87 gK~A~ItvkRprkv 100 (1027)
T KOG3580|consen 87 GKVAAITVKRPRKV 100 (1027)
T ss_pred ccceeEEeccccee
Confidence 99888888876543
No 39
>KOG1892|consensus
Probab=98.13 E-value=8.9e-06 Score=93.44 Aligned_cols=77 Identities=21% Similarity=0.437 Sum_probs=67.3
Q ss_pred eeEEeccCCCCCcceeEEEEcC-----C--CeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCC
Q psy12108 520 RSIQLQRANNSDTGFGFSVRGD-----A--PVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGK 591 (665)
Q Consensus 520 r~v~l~rg~~~~~g~Gf~l~g~-----~--~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~ 591 (665)
-+|+|.| .+|+|++|+.. . ||+|.+|++||+|+. +.|..||++++|||....+++.+.+..++.+.|.
T Consensus 935 ~~vtL~K----nnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 935 ITVTLKK----NNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred EEEEEec----cCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 4466666 36999998732 1 899999999999999 7799999999999999999999999999999999
Q ss_pred ceeEEEEcC
Q psy12108 592 CLSLKLVTP 600 (665)
Q Consensus 592 ~v~L~V~~~ 600 (665)
.|.|.|...
T Consensus 1011 vV~leVaKq 1019 (1629)
T KOG1892|consen 1011 VVHLEVAKQ 1019 (1629)
T ss_pred eEEEehhhh
Confidence 999999743
No 40
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.10 E-value=9.2e-06 Score=69.80 Aligned_cols=58 Identities=33% Similarity=0.476 Sum_probs=49.9
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPM 601 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~ 601 (665)
.+++|..|.+++||+++||++||+|++|||.++.++ .++...+... +..+.+++.+.+
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 368899999999999999999999999999999755 5788888765 678899887654
No 41
>KOG3580|consensus
Probab=98.08 E-value=5.6e-06 Score=91.06 Aligned_cols=95 Identities=20% Similarity=0.348 Sum_probs=73.9
Q ss_pred hHHhhcCcccccccccccccceeEEeccCCCCCcceeEEEEcCC--CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCC
Q psy12108 499 DLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDA--PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576 (665)
Q Consensus 499 d~f~~LgP~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g~~--~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~ 576 (665)
++|....|.....-.- -...+.|++.||. .+|+.|.|+. |+||..|..|+||+.-||+.||+|+.||.++..+
T Consensus 389 ~~~~~pS~~~m~~ygy-sP~tk~VrF~KGd----SvGLRLAGGNDVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~n 463 (1027)
T KOG3580|consen 389 RTFLRPSPEDMAIYGY-SPNTKMVRFKKGD----SVGLRLAGGNDVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRN 463 (1027)
T ss_pred ceeeecCHHHHHHhcC-CCCceeEEeecCC----eeeeEeccCCceeEEEeecccCCchhhccccccceeEEeccccchh
Confidence 4555555444221110 1345778888873 6999999886 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhh--CCceeEEEE
Q psy12108 577 SPHEEVVQLIKDA--GKCLSLKLV 598 (665)
Q Consensus 577 ~~~~evv~~ik~~--g~~v~L~V~ 598 (665)
+..+|+|..|-.- |..|+|...
T Consensus 464 l~REeAVlfLL~lPkGEevtilaQ 487 (1027)
T KOG3580|consen 464 LVREEAVLFLLELPKGEEVTILAQ 487 (1027)
T ss_pred hhHHHHHHHHhcCCCCcEEeehhh
Confidence 9999999998876 566766554
No 42
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.01 E-value=1.9e-05 Score=66.71 Aligned_cols=56 Identities=32% Similarity=0.411 Sum_probs=47.7
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHh--hCCceeEEEEcCC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD--AGKCLSLKLVTPM 601 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~--~g~~v~L~V~~~~ 601 (665)
++.|..|.+||||+. ||++||+|++|||.++.. ++++...+.. .|..+.+++.+.+
T Consensus 9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence 588999999999997 799999999999999974 4788888875 3668889888654
No 43
>KOG3542|consensus
Probab=97.98 E-value=7.3e-06 Score=91.20 Aligned_cols=95 Identities=23% Similarity=0.386 Sum_probs=77.1
Q ss_pred HHhhcCcccccccccccccceeEEeccCCCCCcceeEEEEcCC----CeEEEEeCCCChhhhcCCCCCCEEEEECCEecC
Q psy12108 500 LFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDA----PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575 (665)
Q Consensus 500 ~f~~LgP~svf~~~~~~~~~r~v~l~rg~~~~~g~Gf~l~g~~----~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~ 575 (665)
|-..|.-+.+.++... .+|.|.++|.. .+..+-|.+.||. +++|..|.||+.|++.||+.||.|++|||++.+
T Consensus 519 M~ghLrLLNIACaaKA--K~RqviLtk~s-re~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfe 595 (1283)
T KOG3542|consen 519 MHGHLRLLNIACAAKA--KPRQVILTKAS-REDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFE 595 (1283)
T ss_pred ccceeeehhhhhhhcc--cceeEEEeccc-ccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchh
Confidence 3444555556665543 57889999865 3778999998874 899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhCCceeEEEE
Q psy12108 576 WSPHEEVVQLIKDAGKCLSLKLV 598 (665)
Q Consensus 576 ~~~~~evv~~ik~~g~~v~L~V~ 598 (665)
.++...+++++++ ...++|+|.
T Consensus 596 nis~~KA~eiLrn-nthLtltvK 617 (1283)
T KOG3542|consen 596 NISAKKAEEILRN-NTHLTLTVK 617 (1283)
T ss_pred hhhHHHHHHHhcC-CceEEEEEe
Confidence 9999999999987 345666664
No 44
>KOG0609|consensus
Probab=97.97 E-value=3.7e-05 Score=84.89 Aligned_cols=86 Identities=21% Similarity=0.390 Sum_probs=74.6
Q ss_pred ccccceeEEeccCCCCCcceeEEEEcCC--CeEEEEeCCCChhhhcC-CCCCCEEEEECCEecCCCChHHHHHHHHhhCC
Q psy12108 515 HWTAPRSIQLQRANNSDTGFGFSVRGDA--PVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGK 591 (665)
Q Consensus 515 ~~~~~r~v~l~rg~~~~~g~Gf~l~g~~--~v~V~~V~pgspA~~aG-Lk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~ 591 (665)
.....|.|.+.|. .+..+|.+++... .++|..|..||.|++.| |.+||.|.+|||++|.+....++..+++.+.+
T Consensus 119 ~~~~vriv~i~k~--~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G 196 (542)
T KOG0609|consen 119 PVEAVRIVRIVKN--TGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG 196 (542)
T ss_pred ccceeEEEEEeec--CCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC
Confidence 3445788889986 4789999998643 69999999999999955 78999999999999999999999999999999
Q ss_pred ceeEEEEcCCC
Q psy12108 592 CLSLKLVTPMH 602 (665)
Q Consensus 592 ~v~L~V~~~~~ 602 (665)
.++++|++...
T Consensus 197 ~itfkiiP~~~ 207 (542)
T KOG0609|consen 197 SITFKIIPSYR 207 (542)
T ss_pred cEEEEEccccc
Confidence 99999987643
No 45
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.66 E-value=0.00019 Score=67.54 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=59.5
Q ss_pred ccccccccccceeEEeccCCC--CCcceeEEEEcC-------CCeEEEEeCCCChhhhcCCCC-CCEEEEECCEecCCCC
Q psy12108 509 IFSAKHHWTAPRSIQLQRANN--SDTGFGFSVRGD-------APVIVASVDSGSLAQFGGMKD-GDFIVAIGDRDVKWSP 578 (665)
Q Consensus 509 vf~~~~~~~~~r~v~l~rg~~--~~~g~Gf~l~g~-------~~v~V~~V~pgspA~~aGLk~-GD~Il~VnG~~v~~~~ 578 (665)
+|+.+.. ..|.|.+.-... ..+.+|++++-. ....|..|.|||||++|||++ .|+|+.+++..+.+
T Consensus 3 v~~~k~~--~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~-- 78 (138)
T PF04495_consen 3 VYNAKGQ--TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDD-- 78 (138)
T ss_dssp EEETTTS--SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--S--
T ss_pred eEECCCC--eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCC--
Confidence 4555543 356666643210 245789988732 267799999999999999998 69999999988874
Q ss_pred hHHHHHHHHhh-CCceeEEEEcCCCCC
Q psy12108 579 HEEVVQLIKDA-GKCLSLKLVTPMHKN 604 (665)
Q Consensus 579 ~~evv~~ik~~-g~~v~L~V~~~~~~~ 604 (665)
.+++.+++... +..+.|.|.......
T Consensus 79 ~~~l~~~v~~~~~~~l~L~Vyns~~~~ 105 (138)
T PF04495_consen 79 EDDLFELVEANENKPLQLYVYNSKTDS 105 (138)
T ss_dssp TCHHHHHHHHTTTS-EEEEEEETTTTC
T ss_pred HHHHHHHHHHcCCCcEEEEEEECCCCe
Confidence 46888888876 668999998654433
No 46
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.63 E-value=0.00015 Score=75.38 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=50.5
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMH 602 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~ 602 (665)
|+.|..+.+++||+++||++||+|++|||+++.++ +++.+++... ++.++|+|.+.+.
T Consensus 192 G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 192 GYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred EEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence 78899999999999999999999999999999855 6788888764 5689999988654
No 47
>KOG0606|consensus
Probab=97.63 E-value=8.9e-05 Score=87.72 Aligned_cols=74 Identities=31% Similarity=0.515 Sum_probs=65.4
Q ss_pred EEeccCCCCCcceeEEEE------cCC-----CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhC
Q psy12108 522 IQLQRANNSDTGFGFSVR------GDA-----PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590 (665)
Q Consensus 522 v~l~rg~~~~~g~Gf~l~------g~~-----~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g 590 (665)
|.++++. .+|||+++ |+. ...|..|.+|+||..+|+++||.|+.|||.+|.++.|.+|++++-..|
T Consensus 630 I~i~~~~---~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 630 ITIHFSG---KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred eeeeccc---cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 7888854 49999866 444 367899999999999999999999999999999999999999999989
Q ss_pred CceeEEEE
Q psy12108 591 KCLSLKLV 598 (665)
Q Consensus 591 ~~v~L~V~ 598 (665)
+.|.+.+.
T Consensus 707 n~v~~~tt 714 (1205)
T KOG0606|consen 707 NKVTLRTT 714 (1205)
T ss_pred CeeEEEee
Confidence 98888876
No 48
>KOG3571|consensus
Probab=97.57 E-value=0.0002 Score=78.08 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=62.1
Q ss_pred cceeEEEEc------CCCeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhh---CCceeEEEEcCC
Q psy12108 532 TGFGFSVRG------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA---GKCLSLKLVTPM 601 (665)
Q Consensus 532 ~g~Gf~l~g------~~~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~---g~~v~L~V~~~~ 601 (665)
.-+|++|.| +.+++|.+|.+||+-+. +.+.+||.|+.||.++.++++.+++|.+|+.. ...++|+|....
T Consensus 261 nfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~ 340 (626)
T KOG3571|consen 261 NFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCW 340 (626)
T ss_pred ccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeecc
Confidence 458999987 34999999999999888 77999999999999999999999999999976 447999998655
Q ss_pred C
Q psy12108 602 H 602 (665)
Q Consensus 602 ~ 602 (665)
+
T Consensus 341 D 341 (626)
T KOG3571|consen 341 D 341 (626)
T ss_pred C
Confidence 4
No 49
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.55 E-value=0.0002 Score=80.07 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=50.9
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHh--hCCceeEEEEcCCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD--AGKCLSLKLVTPMHK 603 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~--~g~~v~L~V~~~~~~ 603 (665)
.+++|..|.+||||+++||++||+|++|||.++..+ .++...+.. .|..++++|.+.+..
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 478999999999999999999999999999999754 677777765 367899999876543
No 50
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.52 E-value=0.00017 Score=80.25 Aligned_cols=59 Identities=24% Similarity=0.450 Sum_probs=51.5
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh-CCceeEEEEcCCCC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTPMHK 603 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~~~~ 603 (665)
++.|..|.++|||+++||++||+|++|||+++.+ ++++...++.. ++.+.++|.+.+..
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEE
Confidence 6899999999999999999999999999999975 47999888874 56789999877644
No 51
>PRK10139 serine endoprotease; Provisional
Probab=97.50 E-value=0.00018 Score=80.84 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=51.2
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHh--hCCceeEEEEcCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD--AGKCLSLKLVTPMH 602 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~--~g~~v~L~V~~~~~ 602 (665)
.|++|..|.++|||+++||++||+|++|||+++.++ .++...|.. .|+.+.++|.+.+.
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~ 350 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGK 350 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 488999999999999999999999999999999855 788888875 37789999887653
No 52
>PRK10139 serine endoprotease; Provisional
Probab=97.50 E-value=0.0002 Score=80.50 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=52.0
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMH 602 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~~~ 602 (665)
.+++|..|.++|||+++||++||+|++|||+++.. ++++.+.++..+..+.|+|.+.+.
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 37899999999999999999999999999999975 479999998766788898887654
No 53
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.47 E-value=0.00023 Score=80.06 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=51.0
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh-CCceeEEEEcCCCC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTPMHK 603 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~~~~ 603 (665)
++.|..|.+||||+++||++||+|++|||+++.+ ++++.+.++.. ++.+.++|.+.+..
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 5789999999999999999999999999999974 47888888764 56889999877644
No 54
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.46 E-value=0.00019 Score=80.68 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=48.3
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMH 602 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~ 602 (665)
+..|..|.|+|||++|||++||+|++|||+++.++ +++...+... |+.++++|.|.+.
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence 45789999999999999999999999999999866 5776666543 5689999987654
No 55
>PRK10942 serine endoprotease; Provisional
Probab=97.45 E-value=0.00026 Score=80.04 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=52.6
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMH 602 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~~~ 602 (665)
.+++|..|.++|||+++||++||+|++|||++|.+ .+++.+.++..+..+.|+|.+.+.
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 37899999999999999999999999999999985 479999998877788999987654
No 56
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.41 E-value=0.00027 Score=76.87 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHh--hCCceeEEEEcCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD--AGKCLSLKLVTPMH 602 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~--~g~~v~L~V~~~~~ 602 (665)
.+++|..|.+++||+++||++||+|++|||+++.++ .++.+.+.. .|+.+.++|.+.+.
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 378999999999999999999999999999999754 688888875 37789999987653
No 57
>PRK10942 serine endoprotease; Provisional
Probab=97.40 E-value=0.00029 Score=79.55 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=51.4
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMHK 603 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~~ 603 (665)
.+++|..|.++|||+++||++||+|++|||++|.++ .++...+... |+.+.++|.+.+..
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 478999999999999999999999999999999855 6888887654 67889998876543
No 58
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.39 E-value=0.00033 Score=78.23 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=52.1
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMH 602 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~ 602 (665)
.+++|..|.++|||+++||++||+|++|||+++.+ .+++.++++.. +..+.|+|.+.+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 37899999999999999999999999999999974 47899999864 6789999988754
No 59
>PRK10898 serine endoprotease; Provisional
Probab=97.38 E-value=0.00035 Score=76.06 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=50.2
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHh--hCCceeEEEEcCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD--AGKCLSLKLVTPMH 602 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~--~g~~v~L~V~~~~~ 602 (665)
.+++|..|.++|||+++||++||+|++|||++|.++ .++.+.+.. .|+.+.|+|.+.+.
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 479999999999999999999999999999999754 677777765 36789999987653
No 60
>KOG3605|consensus
Probab=97.16 E-value=0.00038 Score=78.04 Aligned_cols=77 Identities=30% Similarity=0.518 Sum_probs=63.2
Q ss_pred ccceeEEeccCCCCCcceeEEEEcCCCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEE
Q psy12108 517 TAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLK 596 (665)
Q Consensus 517 ~~~r~v~l~rg~~~~~g~Gf~l~g~~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~ 596 (665)
.++-+|.|.|-. -...+||++..+ +|.++..||.|+++|+++|.+|++|||++|--..|+.+|++|..+=.+|-++
T Consensus 735 pPV~~V~I~RPd-~kyQLGFSVQNG---iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMK 810 (829)
T KOG3605|consen 735 PPVTTVLIRRPD-LRYQLGFSVQNG---IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMK 810 (829)
T ss_pred CCceEEEeeccc-chhhccceeeCc---EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhh
Confidence 345667777753 367899999875 6889999999999999999999999999999999999999998874444444
Q ss_pred E
Q psy12108 597 L 597 (665)
Q Consensus 597 V 597 (665)
.
T Consensus 811 T 811 (829)
T KOG3605|consen 811 T 811 (829)
T ss_pred c
Confidence 3
No 61
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.15 E-value=0.00056 Score=75.29 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=41.3
Q ss_pred EEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEE
Q psy12108 546 VASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598 (665)
Q Consensus 546 V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~ 598 (665)
|..|.|||||+++||++||+|++|||+++.+| .++...+. +..+.++|.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHhc--CCcEEEEEE
Confidence 66799999999999999999999999999755 57766663 456888876
No 62
>KOG3938|consensus
Probab=97.14 E-value=0.001 Score=67.41 Aligned_cols=85 Identities=21% Similarity=0.441 Sum_probs=72.5
Q ss_pred cccccceeEEeccCCCCCcceeEEEEcC--CCeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhh-
Q psy12108 514 HHWTAPRSIQLQRANNSDTGFGFSVRGD--APVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA- 589 (665)
Q Consensus 514 ~~~~~~r~v~l~rg~~~~~g~Gf~l~g~--~~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~- 589 (665)
+.-+.++.|++.| +...||++|... ...||..|.+||.-++ --+++||.|-+|||+++-++.|-+|..+|+.-
T Consensus 122 HvkGq~kEv~v~K---sedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~ 198 (334)
T KOG3938|consen 122 HVKGQAKEVEVVK---SEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELP 198 (334)
T ss_pred hhcCcceeEEEEe---cccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcc
Confidence 3445667799999 456999999854 3679999999999998 56899999999999999999999999999986
Q ss_pred -CCceeEEEEcCC
Q psy12108 590 -GKCLSLKLVTPM 601 (665)
Q Consensus 590 -g~~v~L~V~~~~ 601 (665)
|...+|.++.|.
T Consensus 199 rge~ftlrLiePk 211 (334)
T KOG3938|consen 199 RGETFTLRLIEPK 211 (334)
T ss_pred cCCeeEEEeeccc
Confidence 778999888773
No 63
>KOG3605|consensus
Probab=96.97 E-value=0.001 Score=74.73 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=66.6
Q ss_pred eeEEeccCCCCCcceeEEEEcCC------CeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCC-
Q psy12108 520 RSIQLQRANNSDTGFGFSVRGDA------PVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGK- 591 (665)
Q Consensus 520 r~v~l~rg~~~~~g~Gf~l~g~~------~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~- 591 (665)
+.|.+.|. ..+.+|..|.... -++|.....+|||++ +.|-.||+|++|||.++-++...-....||+..+
T Consensus 647 KEVvv~K~--kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 647 KEVVLEKH--KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ceeeeecc--cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 45777776 5788999877332 467889999999999 5599999999999999999999999999998754
Q ss_pred -ceeEEEEcCC
Q psy12108 592 -CLSLKLVTPM 601 (665)
Q Consensus 592 -~v~L~V~~~~ 601 (665)
.|+|+|++.-
T Consensus 725 T~VkltiV~cp 735 (829)
T KOG3605|consen 725 TAVKLNIVSCP 735 (829)
T ss_pred ceEEEEEecCC
Confidence 6899998653
No 64
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=96.96 E-value=0.001 Score=55.17 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=45.4
Q ss_pred hhhhHhhHHHHHH----------HHh-hhhhh-hhhhhhhhhhHhHhhHHHHHHHHhhhccceeeccc
Q psy12108 17 YGDSKHNQRNVAQ----------LQA-TTNRK-LKETVALELSFVNSNLQLLKEQLAELNSSVELYQN 72 (665)
Q Consensus 17 ~~r~~~~~~~~~~----------~~a-~~~~~-~~~~v~lels~~~s~lq~l~~~l~~ln~~~~~~q~ 72 (665)
++++.|+.+|.+| +++ +|+++ ++.+|..+|.+.|.++++|+++|++|+.....++.
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~~~ 68 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQNSQS 68 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 3678899999999 566 66665 69999999999999999999999999998887665
No 65
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.87 E-value=0.0017 Score=72.39 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=46.6
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcC
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~ 600 (665)
.+..|..|.++|||++|||++||+|++|||.++.++ .++.+.+....+.+.+.+.+.
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~ 184 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAE 184 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEe
Confidence 367899999999999999999999999999999755 677777665546666666653
No 66
>KOG3129|consensus
Probab=96.85 E-value=0.0027 Score=62.61 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=47.2
Q ss_pred eEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCC-hHHHHHHHHhh-CCceeEEEEcCCCCCCcc
Q psy12108 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP-HEEVVQLIKDA-GKCLSLKLVTPMHKNNNV 607 (665)
Q Consensus 544 v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~-~~evv~~ik~~-g~~v~L~V~~~~~~~~~~ 607 (665)
++|.+|.|+|||++|||+.||.|+.+..+.-.+.. ...+....+.. +..+.++|.+.+..--..
T Consensus 141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ 206 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLS 206 (231)
T ss_pred EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEE
Confidence 67999999999999999999999999876654433 33444444443 668999999876544333
No 67
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.81 E-value=0.0039 Score=68.30 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=52.0
Q ss_pred cceeEEEEcCCCeEEEEe--------CCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh-CCceeEEEEcCCC
Q psy12108 532 TGFGFSVRGDAPVIVASV--------DSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTPMH 602 (665)
Q Consensus 532 ~g~Gf~l~g~~~v~V~~V--------~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~~~ 602 (665)
..+|+.+... +++|... ..++||+++||++||+|++|||.++..+ +++.+.++.. +..+.++|.|.+.
T Consensus 96 ~~iGI~l~t~-GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge 172 (402)
T TIGR02860 96 QSIGVKLNTK-GVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGK 172 (402)
T ss_pred EEEEEEEecC-EEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCE
Confidence 3577766543 5666443 2368999999999999999999999755 7999999876 5678888877653
No 68
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=96.79 E-value=0.0019 Score=53.78 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=48.3
Q ss_pred HHHHhhhhhhHhhHHHHHH----------HHhhhhhh---hhhhhhhhhhHhHhhHHHHHHHHhhhccc
Q psy12108 11 IAQMVTYGDSKHNQRNVAQ----------LQATTNRK---LKETVALELSFVNSNLQLLKEQLAELNSS 66 (665)
Q Consensus 11 ~~~~~q~~r~~~~~~~~~~----------~~a~~~~~---~~~~v~lels~~~s~lq~l~~~l~~ln~~ 66 (665)
.++++|.+.+.|+.+|.+| +++.++.+ .+.+|.-+|+..+.+|++|+.+|+.++..
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999 45655544 59999999999999999999999998754
No 69
>KOG1738|consensus
Probab=96.36 E-value=0.02 Score=64.88 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=58.8
Q ss_pred CCcceeEEEEc--CCCeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEE
Q psy12108 530 SDTGFGFSVRG--DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598 (665)
Q Consensus 530 ~~~g~Gf~l~g--~~~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~ 598 (665)
...|+|+.|.. +.+++|..+.+++||+. .-|..||.|+.||++-|.+|.+..+|..++.....|.++|.
T Consensus 211 p~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lk 282 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLK 282 (638)
T ss_pred cccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeee
Confidence 35688888774 34789999999999999 66999999999999999999999999999987666666665
No 70
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=96.35 E-value=0.0064 Score=48.29 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=40.2
Q ss_pred hhhHhhHHHHHH----------HHhhhhhh-hhhhhhhhhhHhHhhHHHHHHHHhh
Q psy12108 18 GDSKHNQRNVAQ----------LQATTNRK-LKETVALELSFVNSNLQLLKEQLAE 62 (665)
Q Consensus 18 ~r~~~~~~~~~~----------~~a~~~~~-~~~~v~lels~~~s~lq~l~~~l~~ 62 (665)
+.+.|..+|.+| +++|+|.+ ++..|.-.|...|.+|++|+++|++
T Consensus 2 ~l~~L~~ki~~E~~i~~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~~ 57 (57)
T smart00742 2 RLEDLRRKIEKELKVKEGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEELEK 57 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 457788999999 68899986 9999999999999999999999974
No 71
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.27 E-value=0.017 Score=50.06 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=38.0
Q ss_pred CeEEEEeCCC--------ChhhhcC--CCCCCEEEEECCEecCCCChHHHHHHHHhh-CCceeEEEEcCC
Q psy12108 543 PVIVASVDSG--------SLAQFGG--MKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKCLSLKLVTPM 601 (665)
Q Consensus 543 ~v~V~~V~pg--------spA~~aG--Lk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~v~L~V~~~~ 601 (665)
...|..|.+| ||-.+.| +++||+|++|||+++..- .+.-.++.+. |..|.|+|.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCC
Confidence 5667788776 6666666 569999999999999744 3677777765 779999998764
No 72
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.11 E-value=0.014 Score=65.07 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=37.2
Q ss_pred CcceeEEEEcCC-CeEEEEeCCCChhhhcCCCCCCEEEEECCE
Q psy12108 531 DTGFGFSVRGDA-PVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572 (665)
Q Consensus 531 ~~g~Gf~l~g~~-~v~V~~V~pgspA~~aGLk~GD~Il~VnG~ 572 (665)
...+|..+.... ...|..|.+||||.+|||.+||.|++|||.
T Consensus 450 ~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 450 AYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred CcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 457888877554 678999999999999999999999999999
No 73
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.016 Score=63.03 Aligned_cols=60 Identities=30% Similarity=0.395 Sum_probs=50.6
Q ss_pred CCCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCC
Q psy12108 541 DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMH 602 (665)
Q Consensus 541 ~~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~ 602 (665)
..+++|..|.+++||+++|++.||.|+++||.++.+. .+....+... |..+.+++.+.+.
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence 3468999999999999999999999999999999754 5777766654 6789999988743
No 74
>KOG1320|consensus
Probab=95.87 E-value=0.036 Score=61.87 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=52.9
Q ss_pred ceeEEEEcCC---------CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCC--ceeEEEEcC
Q psy12108 533 GFGFSVRGDA---------PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGK--CLSLKLVTP 600 (665)
Q Consensus 533 g~Gf~l~g~~---------~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~--~v~L~V~~~ 600 (665)
||-|...+.. .+.|+.|.||+++..+|+++||+|++|||++|++. .++.++|+.+.. .|.+...+.
T Consensus 380 g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 380 GLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred ceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecC
Confidence 5666665543 37899999999999999999999999999999977 689999998853 555544443
No 75
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.53 E-value=0.051 Score=56.80 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=41.0
Q ss_pred EeCCCChhh---hcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcCCC
Q psy12108 548 SVDSGSLAQ---FGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTPMH 602 (665)
Q Consensus 548 ~V~pgspA~---~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~~~ 602 (665)
.|.||..++ ++||++||.+++|||.++.+. .+..+++..- ..+++|+|.|.+.
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq 267 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGA 267 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCE
Confidence 455665443 399999999999999999865 5667777654 5689999998764
No 76
>KOG3532|consensus
Probab=95.48 E-value=0.03 Score=63.51 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=53.0
Q ss_pred CcceeEEEE--cCCCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEc
Q psy12108 531 DTGFGFSVR--GDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599 (665)
Q Consensus 531 ~~g~Gf~l~--g~~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~ 599 (665)
...+|+... |..-|.|..|.|++||.++.+++||++++|||++|. +..++...++.....+...+++
T Consensus 385 s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred cCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 445666554 344678999999999999999999999999999997 4578888888875555555553
No 77
>KOG4407|consensus
Probab=94.72 E-value=0.039 Score=66.55 Aligned_cols=60 Identities=17% Similarity=0.373 Sum_probs=54.0
Q ss_pred eEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcCCCC
Q psy12108 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHK 603 (665)
Q Consensus 544 v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~~~~ 603 (665)
++|..|.+++||..+.|+-||.++.||..++.++...+++.+|++..-.+++.|++..-+
T Consensus 145 ~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~d 204 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKECD 204 (1973)
T ss_pred hhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccCc
Confidence 578899999999999999999999999999999999999999999888888888865443
No 78
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=92.36 E-value=0.31 Score=51.47 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=47.5
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh--CCceeEEEEcC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA--GKCLSLKLVTP 600 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~--g~~v~L~V~~~ 600 (665)
|++|..|..++|+. +-|+.||.|++|||+++. +.+|....+++. |++|++...+.
T Consensus 131 gvyv~~v~~~~~~~-gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 131 GVYVLSVIDNSPFK-GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eEEEEEccCCcchh-ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 58899999999986 569999999999999997 458999999875 88999998863
No 79
>PF12812 PDZ_1: PDZ-like domain
Probab=92.00 E-value=0.32 Score=41.20 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=38.5
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG 590 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g 590 (665)
++++.....|+++...|+..|-.|.+|||+++.++ +++++.+++..
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 35566778899999888999999999999999855 79999888753
No 80
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=91.49 E-value=0.77 Score=46.64 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=50.3
Q ss_pred eeEEeccCCCCCcceeEEEEcCCCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhC--CceeEEE
Q psy12108 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAG--KCLSLKL 597 (665)
Q Consensus 520 r~v~l~rg~~~~~g~Gf~l~g~~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g--~~v~L~V 597 (665)
|...+.| ++.-.|+.+..++ +++.-+..||++||..++||+.++.+ .+++..+++.-. .++.++|
T Consensus 196 rltpv~r---~eki~Gyr~~pgk--------d~slF~~sglq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv 262 (275)
T COG3031 196 RLTPVIR---NEKIEGYRFEPGK--------DGSLFYKSGLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTV 262 (275)
T ss_pred EeeeEee---CCceEEEEecCCC--------CcchhhhhcCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEE
Confidence 4444545 3446777666543 45666779999999999999999963 467777777653 4799999
Q ss_pred EcCCCC
Q psy12108 598 VTPMHK 603 (665)
Q Consensus 598 ~~~~~~ 603 (665)
.+.+..
T Consensus 263 ~R~G~r 268 (275)
T COG3031 263 IRRGKR 268 (275)
T ss_pred EecCcc
Confidence 987643
No 81
>KOG1421|consensus
Probab=90.20 E-value=0.45 Score=54.63 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=43.9
Q ss_pred eEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHh-hCCceeEEEEcCCC
Q psy12108 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD-AGKCLSLKLVTPMH 602 (665)
Q Consensus 544 v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~-~g~~v~L~V~~~~~ 602 (665)
..|..|.++|||++ -|++||.+++||+.-+.++ .++-+++.. .|+.+.|+|.+.+.
T Consensus 305 LvV~~vL~~gpa~k-~Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggq 361 (955)
T KOG1421|consen 305 LVVETVLPEGPAEK-KLEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQ 361 (955)
T ss_pred EEEEEeccCCchhh-ccCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCE
Confidence 46888999999997 4999999999998887544 455555544 37789998887665
No 82
>KOG3834|consensus
Probab=87.91 E-value=1.6 Score=47.82 Aligned_cols=79 Identities=29% Similarity=0.356 Sum_probs=57.1
Q ss_pred cceeEEeccCCCCCcc---eeEEEEcCC-------CeEEEEeCCCChhhhcCCC-CCCEEEEE-CCEecCCCChHHHHHH
Q psy12108 518 APRSIQLQRANNSDTG---FGFSVRGDA-------PVIVASVDSGSLAQFGGMK-DGDFIVAI-GDRDVKWSPHEEVVQL 585 (665)
Q Consensus 518 ~~r~v~l~rg~~~~~g---~Gf~l~g~~-------~v~V~~V~pgspA~~aGLk-~GD~Il~V-nG~~v~~~~~~evv~~ 585 (665)
..|.+.+... +.-| ||.+|+--. --.|-+|.+++||+.|||+ .+|+|+-+ +.+.- ..++...+
T Consensus 77 ~~R~v~I~ps--~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~l 151 (462)
T KOG3834|consen 77 EVRIVEIVPS--NNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTL 151 (462)
T ss_pred eeEEEEeccc--ccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHH
Confidence 5677888876 4556 888887432 1247789999999999999 68999988 55433 34677888
Q ss_pred HHhh-CCceeEEEEcCC
Q psy12108 586 IKDA-GKCLSLKLVTPM 601 (665)
Q Consensus 586 ik~~-g~~v~L~V~~~~ 601 (665)
|... ++.+.|.|..-.
T Consensus 152 Ieshe~kpLklyVYN~D 168 (462)
T KOG3834|consen 152 IESHEGKPLKLYVYNHD 168 (462)
T ss_pred HHhccCCCcceeEeecC
Confidence 8765 567888776433
No 83
>KOG3834|consensus
Probab=82.89 E-value=1.8 Score=47.51 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCeEEEEeCCCChhhhcCCCC-CCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcCCCCC
Q psy12108 542 APVIVASVDSGSLAQFGGMKD-GDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKN 604 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~-GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~~~~~ 604 (665)
.+..|.+|..+++|.++||.+ -|.|++|||..+.. ..+.+..+++..-..|+|+|.......
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt~~ 77 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKTQE 77 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecccce
Confidence 366788999999999999987 69999999999863 346777777777666999998654433
No 84
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=78.72 E-value=4.9 Score=43.89 Aligned_cols=53 Identities=30% Similarity=0.496 Sum_probs=42.3
Q ss_pred EEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhh-CCc---eeEEEEc
Q psy12108 545 IVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDA-GKC---LSLKLVT 599 (665)
Q Consensus 545 ~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~-g~~---v~L~V~~ 599 (665)
.+..+.++++|..+|+++||.|+++|+.++..+ +++...+... +.. +.+.+.+
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 444789999999999999999999999999766 5776666654 444 6777776
No 85
>KOG0792|consensus
Probab=70.58 E-value=2.8 Score=50.71 Aligned_cols=59 Identities=37% Similarity=0.596 Sum_probs=51.5
Q ss_pred CcceeEEEEcCC---------CeEEEEeC-------------CCChhhhcC--CCCCCEEEEECCEecCCCChHHHHHHH
Q psy12108 531 DTGFGFSVRGDA---------PVIVASVD-------------SGSLAQFGG--MKDGDFIVAIGDRDVKWSPHEEVVQLI 586 (665)
Q Consensus 531 ~~g~Gf~l~g~~---------~v~V~~V~-------------pgspA~~aG--Lk~GD~Il~VnG~~v~~~~~~evv~~i 586 (665)
.+.|||.+.|+. |+.++.|. |+++|+..+ +..||.++.|||.++....|+.++.+|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 578999999862 67788888 999998854 778999999999999999999999999
Q ss_pred Hhh
Q psy12108 587 KDA 589 (665)
Q Consensus 587 k~~ 589 (665)
+..
T Consensus 795 rs~ 797 (1144)
T KOG0792|consen 795 RSP 797 (1144)
T ss_pred hhh
Confidence 976
No 86
>KOG2921|consensus
Probab=67.73 E-value=7.3 Score=42.49 Aligned_cols=44 Identities=23% Similarity=0.179 Sum_probs=34.7
Q ss_pred CeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHh
Q psy12108 543 PVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD 588 (665)
Q Consensus 543 ~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~ 588 (665)
++.|..|...||+.- -||.+||.|.++||.+|.. .++..+.++.
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 456677777788765 5999999999999999974 4677777765
No 87
>KOG4371|consensus
Probab=66.26 E-value=7.4 Score=47.12 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=53.1
Q ss_pred CcceeEEEEcCC-CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcCCCC
Q psy12108 531 DTGFGFSVRGDA-PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHK 603 (665)
Q Consensus 531 ~~g~Gf~l~g~~-~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~~~~ 603 (665)
.+.+|..+..-. .+.|....-.+.-.+-.|+.||.++.|||+-+.+.-|.+|+.++++.|+.|.|-|.++...
T Consensus 1157 ~~~l~~~~a~~~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 1230 (1332)
T KOG4371|consen 1157 EGSLGVQIASLSGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPA 1230 (1332)
T ss_pred CCCCCceeccCccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcc
Confidence 345666555433 2334333333322335699999999999999999999999999999999999999987543
No 88
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=56.37 E-value=15 Score=36.36 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=30.4
Q ss_pred eeEEEEcC-CCeEEEEeCCCChhhhcCCCCCCEEEEEC
Q psy12108 534 FGFSVRGD-APVIVASVDSGSLAQFGGMKDGDFIVAIG 570 (665)
Q Consensus 534 ~Gf~l~g~-~~v~V~~V~pgspA~~aGLk~GD~Il~Vn 570 (665)
.|+++... ..+.|..|..||||+++|+.-|+.|++|-
T Consensus 113 ~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLMEEGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEeeCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 46665533 35889999999999999999999998874
No 89
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=50.79 E-value=25 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q psy12108 221 ACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAA 257 (665)
Q Consensus 221 asVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AA 257 (665)
|-++||+|.+|..++ ....|+.+|++|-
T Consensus 1 a~~~~~~g~~~~~~~---------~~~~A~~~~~~al 28 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG---------DYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHHTT----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---------CchHHHHHHHHHH
Confidence 457899999887664 3688999999874
No 90
>KOG1421|consensus
Probab=48.58 E-value=29 Score=40.65 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=42.4
Q ss_pred CCeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCc
Q psy12108 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKC 592 (665)
Q Consensus 542 ~~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~ 592 (665)
.+++|.....||||.+ +|+.-..|++|||.++. +.++...+++...+.
T Consensus 862 ~gvyvt~rg~gspalq-~l~aa~fitavng~~t~--~lddf~~~~~~ipdn 909 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTN--TLDDFYHMLLEIPDN 909 (955)
T ss_pred CceEEeecccCChhHh-hcchheeEEEecccccC--cHHHHHHHHhhCCCC
Confidence 3899999999999999 99999999999999986 458999999987553
No 91
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=43.65 E-value=14 Score=39.22 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.6
Q ss_pred EEEEeCCCChhhhcCCCCCCEEEEECCEecC
Q psy12108 545 IVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575 (665)
Q Consensus 545 ~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~ 575 (665)
-|-+|.|-+||+++|+-.||+|+-+|+.++.
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCcHH
Confidence 4667899999999999999999999987763
No 92
>KOG2002|consensus
Probab=39.66 E-value=1.2e+02 Score=37.26 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHHHhHHHHHhhc
Q psy12108 222 CVLFNMAAIYTQMAAKQ---DRLTSTGLDQAVDNFLRAAGTFTYLQENF 267 (665)
Q Consensus 222 sVLfNiaal~sqia~~~---~r~t~~glK~A~~~Fq~AAG~f~~l~e~~ 267 (665)
+|+||+|.++-++|..- .+.|.+.+..|..-+..|=-+|.||..+-
T Consensus 751 ~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 751 SVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 49999999999999763 56788899999999999999999997754
No 93
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=38.63 E-value=47 Score=22.25 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q psy12108 221 ACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAA 257 (665)
Q Consensus 221 asVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AA 257 (665)
|.++|++|-+|.+++ ....|..+|++|-
T Consensus 1 a~~~~~lg~~y~~~~---------~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLG---------DYEEALEYFEKAL 28 (34)
T ss_dssp -HHHHHHHHHHHHTT---------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Confidence 568899999997765 3678888888864
No 94
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=38.17 E-value=53 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh
Q psy12108 221 ACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGT 259 (665)
Q Consensus 221 asVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~ 259 (665)
|-++|++|-+|.+.+ ..++|+.+|++|.-+
T Consensus 1 a~~~~~lg~~~~~~~---------~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG---------NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHH
Confidence 457888888876654 378999999998643
No 95
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=36.69 E-value=16 Score=19.93 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhH
Q psy12108 249 AVDNFLRAAGTF 260 (665)
Q Consensus 249 A~~~Fq~AAG~f 260 (665)
|+++|++||-||
T Consensus 1 A~~~y~~Aa~~y 12 (12)
T PF02071_consen 1 AIKCYEKAAECY 12 (12)
T ss_pred CcHHHHHHHhhC
Confidence 467788888765
No 96
>KOG4371|consensus
Probab=36.31 E-value=38 Score=41.47 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=54.5
Q ss_pred EEeccCCCCCcceeEEEEcC---CCeEEEEeCCCChhhh-cCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEE
Q psy12108 522 IQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597 (665)
Q Consensus 522 v~l~rg~~~~~g~Gf~l~g~---~~v~V~~V~pgspA~~-aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V 597 (665)
+.+.+. -..++|+.+... .+++|..+..++.|.- +.+++||+++..+|+++.+.+.....+.++=.-+.+.++|
T Consensus 1249 ~~~~~~--p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~ 1326 (1332)
T KOG4371|consen 1249 VMLLKK--PMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITV 1326 (1332)
T ss_pred heeeec--ccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhhee
Confidence 444443 235777765533 3788888877766665 7799999999999999999987777777664455666666
Q ss_pred EcC
Q psy12108 598 VTP 600 (665)
Q Consensus 598 ~~~ 600 (665)
.+.
T Consensus 1327 ~~~ 1329 (1332)
T KOG4371|consen 1327 TRE 1329 (1332)
T ss_pred hhh
Confidence 543
No 97
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=35.61 E-value=3.3e+02 Score=24.67 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHHH
Q psy12108 215 TIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDMLIQLMLAQAREC 294 (665)
Q Consensus 215 sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~~~ps~Dls~~~L~~L~~lmLAQAQEc 294 (665)
.-..+...+||..+.-+...|...- .......+..++++|-.++..|...+......|+. ..|..|...|..+-.+.
T Consensus 16 asp~~Li~~Lyd~ai~~l~~a~~a~--~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia-~~L~~lY~y~~~~L~~A 92 (122)
T PF02561_consen 16 ASPHQLILMLYDGAIEFLKQAKEAI--EQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIA-DNLFRLYDYMIRQLVQA 92 (122)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHH-HHHHHHHHHHHHHHHHH
Confidence 3456888889987777766665532 23458999999999999999997766443334443 56667777776666555
Q ss_pred HH
Q psy12108 295 LF 296 (665)
Q Consensus 295 ~~ 296 (665)
.+
T Consensus 93 ~~ 94 (122)
T PF02561_consen 93 NL 94 (122)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 98
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.61 E-value=77 Score=31.40 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHh
Q psy12108 217 AFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQE 265 (665)
Q Consensus 217 ~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e 265 (665)
...+.-.++|+|..||.+|--... ..+|-.+|.+|..+|+-..+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d-----~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPD-----TAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHh
Confidence 334667899999999999964422 47888899999999876543
No 99
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=33.04 E-value=84 Score=25.39 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHH
Q psy12108 218 FEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFT 261 (665)
Q Consensus 218 fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~ 261 (665)
.+.+.+++|||.+|...| ..++|..+|++|--+++
T Consensus 43 ~~~a~~~~~lg~~~~~~g---------~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 43 PDTANTLNNLGECYYRLG---------DYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhhc
Confidence 467999999999987665 37899999999977764
No 100
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=32.48 E-value=82 Score=21.19 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH
Q psy12108 223 VLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAG 258 (665)
Q Consensus 223 VLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG 258 (665)
..|++|.+|. .| .......+.|+.+|++||-
T Consensus 3 a~~~lg~~~~-~G----~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYE-YG----LGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHH-cC----CCCCcCHHHHHHHHHHHHH
Confidence 4677777762 22 2345568999999999984
No 101
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=32.42 E-value=63 Score=22.49 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh
Q psy12108 223 VLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGT 259 (665)
Q Consensus 223 VLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~ 259 (665)
.|.|||.+|.+.| ...+|+.+|++|..+
T Consensus 1 al~~Lg~~~~~~g---------~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQG---------DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---------CHHHHHHHHHHHHHh
Confidence 3678898887765 368899999997743
No 102
>KOG2460|consensus
Probab=29.77 E-value=8.2e+02 Score=28.35 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhccccccccccccccCCCCcHHHHhHHHHHHHHHH
Q psy12108 342 VPLSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDESQRKQLGVAHLRSA 421 (665)
Q Consensus 342 ~~~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~kahLr~A 421 (665)
-++....-+.+|..||+|.-.||.|....+.. ++.+|.|-.-+|
T Consensus 405 ~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~------------------------------------K~~EAlALy~Ra 448 (593)
T KOG2460|consen 405 SDKELQSQLELKKLYFKAFRCFYIAVSYQAKK------------------------------------KYSEALALYVRA 448 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHH
Confidence 35678889999999999999999998876643 788889999999
Q ss_pred HHHHHHHHHHHh
Q psy12108 422 LLFHEESQRIYR 433 (665)
Q Consensus 422 ~~~~eeAlRl~~ 433 (665)
..+.+++....+
T Consensus 449 ~sylqe~~~~l~ 460 (593)
T KOG2460|consen 449 YSYLQEVNSELE 460 (593)
T ss_pred HHHHHHHHhhhh
Confidence 999888877654
No 103
>PHA03332 membrane glycoprotein; Provisional
Probab=29.75 E-value=89 Score=38.50 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=32.9
Q ss_pred HHhhhhh--hhhhhhhhhhhHhHhhHHHHHHHHhh----hcccee
Q psy12108 30 LQATTNR--KLKETVALELSFVNSNLQLLKEQLAE----LNSSVE 68 (665)
Q Consensus 30 ~~a~~~~--~~~~~v~lels~~~s~lq~l~~~l~~----ln~~~~ 68 (665)
++|+.+| ++.++|-+-+++|++++..|.|+|.+ +|.+++
T Consensus 932 I~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie 976 (1328)
T PHA03332 932 IRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIE 976 (1328)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 6777776 58999999999999999999999655 677766
No 104
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=27.22 E-value=1.8e+02 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHHHHHHH-HHHhhcCCCChhhHHHHHHHHHHHHH
Q psy12108 223 VLFNMAAIYT-QMAAKQDRLTSTGLDQAVDNFLRAAG 258 (665)
Q Consensus 223 VLfNiaal~s-qia~~~~r~t~~glK~A~~~Fq~AAG 258 (665)
..|++|.++. .-|. .......+.|+.+|++||-
T Consensus 3 A~~~lg~~~~~~~g~---~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 3 AQYNLGMYYMYYNGK---GGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHTS---TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcc---CCccccccchHHHHHHHHH
Confidence 4577772221 2222 2244569999999999984
No 105
>KOG1125|consensus
Probab=27.21 E-value=9.7e+02 Score=27.98 Aligned_cols=90 Identities=20% Similarity=0.108 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCcc-ccCccchhHHHHHHH---HHHH
Q psy12108 281 DMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPE-VKDYVPLSWVSLIQV---KKEH 356 (665)
Q Consensus 281 ~~L~~lmLAQAQEc~~~Ka~~~~~~~~~~~l~~~iAklA~qv~~~Y~~a~~~~~~~~-~~~~~~~~W~~~~~~---K~~~ 356 (665)
+.+..-++|.-||.|++-+..... +.++.+..-+ .+-.-.+.-|+.|.++++..- ++++--.-|.++=-. -...
T Consensus 403 s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~L-GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s 480 (579)
T KOG1125|consen 403 SFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGL-GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS 480 (579)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhh-HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc
Confidence 445567889999999998886553 2233222111 122344555666666655421 233344568776322 2234
Q ss_pred HHHHhhHHHhhhcccc
Q psy12108 357 YLALSHYYCASGLLTK 372 (665)
Q Consensus 357 f~A~A~y~~a~~l~~~ 372 (665)
-.|+.-|+.|+.|...
T Consensus 481 ~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 481 EEAISAYNRALQLQPG 496 (579)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 6899999999988764
No 106
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.60 E-value=1.4e+02 Score=25.21 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHhhcc
Q psy12108 224 LFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFT 268 (665)
Q Consensus 224 LfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e~~~ 268 (665)
|=+.|.-|.+.|..+|... ...+|+.+|+.|++.|..+.....
T Consensus 2 L~~~A~~~a~~AVe~D~~g--r~~eAi~~Y~~aIe~L~q~~~~~p 44 (75)
T cd02682 2 LEEMARKYAINAVKAEKEG--NAEDAITNYKKAIEVLSQIVKNYP 44 (75)
T ss_pred HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888887643 389999999999999988866544
No 107
>KOG4407|consensus
Probab=26.35 E-value=27 Score=43.55 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=59.3
Q ss_pred cccceeEEeccCCCCCcceeEEEEc--------------------CC---------CeEEEEeCCCChhhhcCCCCCCEE
Q psy12108 516 WTAPRSIQLQRANNSDTGFGFSVRG--------------------DA---------PVIVASVDSGSLAQFGGMKDGDFI 566 (665)
Q Consensus 516 ~~~~r~v~l~rg~~~~~g~Gf~l~g--------------------~~---------~v~V~~V~pgspA~~aGLk~GD~I 566 (665)
|.++.+|.+.| ...||||+|+- |. -+++..+..++|+..+|+..||.|
T Consensus 44 ~~~~~~V~~rR---~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v 120 (1973)
T KOG4407|consen 44 IQPKLIVIRRR---PNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGV 120 (1973)
T ss_pred CCCceEEEEec---CCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccce
Confidence 44556666666 45699999982 11 356777888999999999999999
Q ss_pred EEECCEecCCCChHHHHHHHHhhCCceeEEEEcC
Q psy12108 567 VAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600 (665)
Q Consensus 567 l~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~ 600 (665)
+.|||..+.+.+ ..+.-+|+.....+.+.|...
T Consensus 121 ~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n 153 (1973)
T KOG4407|consen 121 AGITGLEPTSPT-SLPPYQVKAMETIFIKEVQAN 153 (1973)
T ss_pred eeecccccCCCc-cccHHHHhhhhhhhhhhhccC
Confidence 999999998877 666666666555555555533
No 108
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=25.03 E-value=2e+02 Score=26.13 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHhhhcCCChhhHHHHHHHHHH
Q psy12108 126 KEIDVREPFKDFILEHYSEDGTAYEDSVSEFMD 158 (665)
Q Consensus 126 ~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~ 158 (665)
+++||.. ++.-|..+.+.+-+.|.+|+..+-+
T Consensus 46 ~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~ 77 (110)
T cd05526 46 IPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLE 77 (110)
T ss_pred CCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHH
Confidence 5688865 7888999999899999988887744
No 109
>PF06780 Erp_C: Erp protein C-terminus; InterPro: IPR009618 This entry represents the C terminus of bacterial Erp proteins that seem to be specific to Borrelia burgdorferi (a causative agent of Lyme disease). Borrelia Erp proteins are particularly heterogeneous, which might enable them to interact with a wide variety of host components [].
Probab=24.12 E-value=69 Score=30.20 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=36.8
Q ss_pred HHhhhhhhHhhHHHHH---HHHhhhhhhhhhhhhhhhhHhHhhHHHHHHHHhhhc
Q psy12108 13 QMVTYGDSKHNQRNVA---QLQATTNRKLKETVALELSFVNSNLQLLKEQLAELN 64 (665)
Q Consensus 13 ~~~q~~r~~~~~~~~~---~~~a~~~~~~~~~v~lels~~~s~lq~l~~~l~~ln 64 (665)
-.|-.-|..|--.|+. .+.-..++++|+.| ..|=.-++|+.||..|+++=
T Consensus 75 ~eL~~~R~~LR~Ki~egn~~y~~~~~~~lK~~V--~vseIk~DLekLKs~LekvK 127 (146)
T PF06780_consen 75 KELSDTRSSLRTKINEGNQAYTKDNEPKLKENV--KVSEIKEDLEKLKSKLEKVK 127 (146)
T ss_pred HHHHHHHHHHHHHHhccchhcccCCCcccccce--ehHHHHhHHHHHHHHHHHHH
Confidence 3455566666555543 36445678999999 67889999999999999874
No 110
>KOG0545|consensus
Probab=23.72 E-value=6.5e+02 Score=26.47 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhcCccccC-ccchhHHHHHHHHHHHHHHHhhHHHhhhcccccccccchhhhhhhhhcccccccccccc
Q psy12108 321 QVAEVYMSLLSLITVPEVKD-YVPLSWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLI 399 (665)
Q Consensus 321 qv~~~Y~~a~~~~~~~~~~~-~~~~~W~~~~~~K~~~f~A~A~y~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (665)
+++..|.+|...+.+-.+++ -....|..+-..+.-.+.-+++++.-....-+ .-+...+.|. +
T Consensus 196 EA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye----vleh~seiL~-~----------- 259 (329)
T KOG0545|consen 196 EASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE----VLEHCSEILR-H----------- 259 (329)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH----HHHHHHHHHh-c-----------
Confidence 45677888877765433332 35678999888888777777765543321110 0000001110 0
Q ss_pred ccCCCCcHHHHhHHHHHHHHHHHHHH---HHHHHHHhHhhhhcchhHHHHHHHHHHHhHHHHhhh
Q psy12108 400 LEFEPEDESQRKQLGVAHLRSALLFH---EESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYAD 461 (665)
Q Consensus 400 ~~~~~~~~~~r~~~~kahLr~A~~~~---eeAlRl~~~c~~lr~~~~L~~vl~~a~~~s~~~y~~ 461 (665)
.-+..||.+++|..+. +++.--.++-+.|+..-+|..+++..+.....+..+
T Consensus 260 ----------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 260 ----------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAE 314 (329)
T ss_pred ----------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 0123566666665543 234444455667777788888888877666555443
No 111
>KOG2002|consensus
Probab=23.69 E-value=1.1e+03 Score=29.33 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHhcc
Q psy12108 173 ISLLFQYYNQLYFIERRF 190 (665)
Q Consensus 173 ~~~L~~Yy~qL~~l~~rf 190 (665)
...|..||.++.+-+..=
T Consensus 86 ~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 86 LDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 367888998888876654
No 112
>KOG1703|consensus
Probab=23.11 E-value=44 Score=38.16 Aligned_cols=58 Identities=29% Similarity=0.384 Sum_probs=52.1
Q ss_pred CeEEEEeCCCChhhhcCCCCCCEEEEECCEecCCCChHHHHHHHHhhCCceeEEEEcC
Q psy12108 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600 (665)
Q Consensus 543 ~v~V~~V~pgspA~~aGLk~GD~Il~VnG~~v~~~~~~evv~~ik~~g~~v~L~V~~~ 600 (665)
++.|..+.|++.++.+.+.+||.|..++|..-..+.|.+....++..+....+.+.+.
T Consensus 22 ~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 79 (479)
T KOG1703|consen 22 PLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRS 79 (479)
T ss_pred ccceeccCCCCccccccccccccccccccccccccccccccCcccccccccccccccc
Confidence 6789999999999999999999999999998888999999999988888877777653
No 113
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=22.27 E-value=6.4e+02 Score=24.67 Aligned_cols=73 Identities=27% Similarity=0.366 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhH-----HHHHHHHHHHHHhHHHHHhhcc-------CCCCCCCChhHHHHHHHH
Q psy12108 219 EKACVLFNMAAIYTQMAAKQDRLTSTGL-----DQAVDNFLRAAGTFTYLQENFT-------NAPSMDLGPPMLDMLIQL 286 (665)
Q Consensus 219 EkasVLfNiaal~sqia~~~~r~t~~gl-----K~A~~~Fq~AAG~f~~l~e~~~-------~~ps~Dls~~~L~~L~~l 286 (665)
|..+-=|+.+-+|.++|+.|+-.+-+|+ +.|-.-...|--+|+|+.+.=. .+|..|++ .+.-+...
T Consensus 12 ~Q~N~E~yas~lYl~maa~~~~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~~~--s~~e~f~~ 89 (167)
T COG1528 12 EQMNLEFYASNLYLQMAAWCSSESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNKFS--SLKELFEK 89 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccccC--CHHHHHHH
Confidence 3445556677788888888875444443 3444444567788999987532 45666654 55555555
Q ss_pred HHHHHHH
Q psy12108 287 MLAQARE 293 (665)
Q Consensus 287 mLAQAQE 293 (665)
+|.+-|.
T Consensus 90 tlehEq~ 96 (167)
T COG1528 90 TLEHEQK 96 (167)
T ss_pred HHHHHHH
Confidence 5555443
No 114
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=21.80 E-value=8.1e+02 Score=25.41 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhHHHHHh
Q psy12108 215 TIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQE 265 (665)
Q Consensus 215 sl~fEkasVLfNiaal~sqia~~~~r~t~~glK~A~~~Fq~AAG~f~~l~e 265 (665)
+-.||.|.-+|+=|+..-.++. ..++|..+|.+||-++.-+.+
T Consensus 28 ~~~~e~Aa~~y~~Aa~~fk~~~--------~~~~A~~ay~kAa~~~~~~~~ 70 (282)
T PF14938_consen 28 KPDYEEAADLYEKAANCFKLAK--------DWEKAAEAYEKAADCYEKLGD 70 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHHHHHh--------ccchhHHHHHHHHHHHHHcCC
Confidence 3588999999998887766653 369999999999999876543
No 115
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=21.42 E-value=2.3e+02 Score=25.11 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCCChHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCc-hhhhHHHHHHHH
Q psy12108 126 KEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDN-SGISLLFQYYNQ 182 (665)
Q Consensus 126 ~~vD~~~~L~~~I~~~y~e~~~~~~~~i~~l~~LR~~~~~~~~~~-~~~~~L~~Yy~q 182 (665)
.++||.. +++-|..++..+...|..|+.-+-.--..-+.++... .....|.+||.+
T Consensus 45 ~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 45 EPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 6789987 6666677777788888888877643322333333221 122555666543
Done!