RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12108
(665 letters)
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 238 bits (608), Expect = 2e-72
Identities = 76/413 (18%), Positives = 146/413 (35%), Gaps = 58/413 (14%)
Query: 116 PMIPLGLKETKEIDVREPFKDFILEHYSEDGTAY---EDSVSEFMDMRQAMRTPNRDNSG 172
+ L LK+T+++D ++ ++ + Y E + SE +R +S
Sbjct: 9 YLFDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 68
Query: 173 ISLLFQYYNQLYFIERRFFPPDRSLGIYFEY------DSLTGVPSCQRTIAFEKACVLFN 226
+YY+ L + R L + F + + G+ Q T+AFEK+C LFN
Sbjct: 69 SEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFN 128
Query: 227 MAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDMLIQL 286
+A I+TQ+A + ++ N +A F YL ENF N+PS+DL L +
Sbjct: 129 IAVIFTQIARENIN---EDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANI 185
Query: 287 MLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLI--TVPEVKDYVPL 344
A+A+E KL + Q+ L +++ + ++ + +V Y
Sbjct: 186 CHAEAQELFVLKLLND--QISSKQYTL-ISKLSRATCNLFQKCHDFMKEIDDDVAIYGEP 242
Query: 345 SWVSLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEP 404
W + + K Y +LS YY L
Sbjct: 243 KWKTTVTCKLHFYKSLSAYYHGLHL----------------------------------- 267
Query: 405 EDESQRKQLGVAHLRSALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEM-----Y 459
+E R +A L ++ S E + + L + ++ +
Sbjct: 268 -EEENRVGEAIAFLDFSMQQLISSLPFKTWLVEFIDFDGFKETLEKKQKELIKDNDFIYH 326
Query: 460 ADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLFKQLGPVAIFSA 512
V + +++ I T ++ + L++ + P+ ++
Sbjct: 327 ESVPAVVQVDSIKALDAIKSPTWEKILEPYMQDVANKYDSLYRGIIPLDVYEK 379
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain,
hydrolase; 1.95A {Homo sapiens}
Length = 363
Score = 225 bits (575), Expect = 6e-68
Identities = 89/405 (21%), Positives = 170/405 (41%), Gaps = 62/405 (15%)
Query: 113 PVMPMIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSG 172
P MPMI L LKE + + K F+L++Y E+ AY + + + +RQ RD G
Sbjct: 7 PRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVPRDFEG 66
Query: 173 ISLLFQYYNQLYFIERRF-FPPDRSLGIYFE-YDSLTGVPSCQRTIAFEKACVLFNMAAI 230
S+L +Y QL++++ R + + + +G I +E+AC+L+N+ A+
Sbjct: 67 CSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSVAHEDIKYEQACILYNLGAL 126
Query: 231 YTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDMLIQLMLAQ 290
++ + A R++ G+ + +F AAG F YL+E+F A S+D+ +L + + LML Q
Sbjct: 127 HSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLMLGQ 186
Query: 291 ARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPE---VKDYVPLSWV 347
A+ECL +K L + +A+ +AQV + Y + P+ + + W
Sbjct: 187 AQECLLEKSMLDNRKSFL------VARISAQVVDYYKEACRALENPDTASLLGRIQKDWK 240
Query: 348 SLIQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNLILEFEPEDE 407
L+Q+K ++ A++H + +E
Sbjct: 241 KLVQMKIYYFAAVAHLHMGKQ------------------------------------AEE 264
Query: 408 SQRKQLGVAHLRSALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDE 467
Q+ VA+ +SAL E+ ++ + + L + Y +++++
Sbjct: 265 QQKFGERVAYFQSALDKLNEAIKLAK-----GQPDTVQDALRFTMDVIGGKYNSAKKDND 319
Query: 468 FNTMY--------EAPNITPSTKFQLTLTPPDFAHLPVEDLFKQL 504
F +Y + + + P + D+F +L
Sbjct: 320 F--IYHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPDIFAKL 362
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C
amphipathic-helix, apoptosis, HOST-virus interaction,
protein transport, transport; 2.02A {Homo sapiens} PDB:
2oew_A 3c3o_A 3c3q_A
Length = 380
Score = 197 bits (501), Expect = 4e-57
Identities = 69/281 (24%), Positives = 127/281 (45%), Gaps = 26/281 (9%)
Query: 110 SKEPVMPMIPLGLKETKEIDVREPFKDFILEHY---SEDGTAYEDSVSEFMDMRQAM--R 164
+ + I + LK+T E+D+ +P FI + Y E+ Y + E +R+A R
Sbjct: 18 FQGHMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGR 77
Query: 165 TPNRDNSGISLLFQYYNQLYFIERRFFPPDRSLGIYFE-YDSLTG-------VPSCQRTI 216
++ + L +YY+Q+ IE +F + + + F D+ V ++
Sbjct: 78 PLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASL 137
Query: 217 AFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA----PS 272
+EK+CVLFN AA+ +Q+AA+Q+ GL A ++ A+G F +++E +A P+
Sbjct: 138 GYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPT 197
Query: 273 MDLGPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSL 332
+D+ P + L +MLAQA+E F K + +A+ A Q A+ +
Sbjct: 198 VDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAI------IAKLANQAADYFGDAFKQ 251
Query: 333 ITVPEVKDYVPLSWVSLIQVKKEHYLALSHYYCASGLLTKS 373
+ KD +P ++ K A + Y+ + +
Sbjct: 252 C---QYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQK 289
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 199 bits (505), Expect = 5e-55
Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 26/277 (9%)
Query: 113 PVMPMIPLGLKETKEIDVREPFKDFILEHY---SEDGTAYEDSVSEFMDMRQAM--RTPN 167
+ I + LK+T E+D+ +P FI + Y E+ Y + E +R+A R +
Sbjct: 6 TMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLD 65
Query: 168 RDNSGISLLFQYYNQLYFIERRFFPPDRSLGIYFE-YDSLTG-------VPSCQRTIAFE 219
+ + L +YY+Q+ IE +F + + + F D+ V ++ +E
Sbjct: 66 KHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 125
Query: 220 KACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA----PSMDL 275
K+CVLFN AA+ +Q+AA+Q+ GL A ++ A+G F +++E +A P++D+
Sbjct: 126 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDI 185
Query: 276 GPPMLDMLIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITV 335
P + L +MLAQA+E F K D +A+ A Q A+ +
Sbjct: 186 SPDTVGTLSLIMLAQAQEVFFLKATR------DKMKDAIIAKLANQAADYFGDAFKQC-- 237
Query: 336 PEVKDYVPLSWVSLIQVKKEHYLALSHYYCASGLLTK 372
+ KD +P ++ K A + Y+ + +
Sbjct: 238 -QYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQ 273
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo
sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Length = 376
Score = 167 bits (424), Expect = 3e-46
Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 28/268 (10%)
Query: 122 LKETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGI-SLLFQYY 180
LK T + F + + D S + + + + + + Y+
Sbjct: 12 LKATAPVS----FNYYGVVTGPSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYF 67
Query: 181 NQLYFIERRFFPPDRSLG----IYFE-YDSLTG-VPSCQRTIAFEKACVLFNMAAIYTQM 234
+ L + F+ D+L G VPS Q+ FE + FN+A YT+
Sbjct: 68 SLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKY 127
Query: 235 AAK---QDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNA------PSMDLGPPMLDMLIQ 285
A++ ++ +T + + AAG F +L+E+ DL +++ +
Sbjct: 128 ASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVI 187
Query: 286 LMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPEVKDYVPLS 345
A+A+E + +A A + A Y ++ ++
Sbjct: 188 QCQAEAQEVTIARAIELKHAPG------LIAALAYETANFYQKADHTLS--SLEPAYSAK 239
Query: 346 WVSLIQVKKEHYLALSHYYCASGLLTKS 373
W + +K Y A ++ Y LL
Sbjct: 240 WRKYLHLKMCFYTAYAYCYHGETLLASD 267
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 124 bits (312), Expect = 8e-34
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIG 570
SA W+ PR I GF++RG+ PV V +D A G K+GD+IV+I
Sbjct: 8 SASKRWSPPRGIHFTVEEG---DLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQ 64
Query: 571 DRDVKWSPHEEVVQLIKDAGK-CLSLKLVTPMHKNNNVHHSHNS 613
D KW EV++L+K G + +K+V+ + +++H+
Sbjct: 65 GVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGP 108
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 108 bits (273), Expect = 9e-29
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
RS+++ R G+GF++ G AP +++ V GS A F G++ GD I+A+ + +VK +
Sbjct: 3 VRSVEVARGRA---GYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS 59
Query: 579 HEEVVQLIKDAGKCLSLKLVTP 600
HE+VV+LI L + +
Sbjct: 60 HEDVVKLIGKCSGVLHMVIAEG 81
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 109 bits (273), Expect = 1e-28
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 514 HHWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
+ + PRSI+ + GF++RG+APV V +D A G ++GD+IV+I D
Sbjct: 19 YFQSMPRSIRFTA---EEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVD 75
Query: 574 VKWSPHEEVVQLIKDAGK-CLSLKLVTPM 601
KW EV++L+K G+ + +K+V+ +
Sbjct: 76 CKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 107 bits (268), Expect = 4e-28
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
R I + R GFGF++ D+PV V +VDSG A+ G++ D ++ + +R V+
Sbjct: 4 YRQITIPR---GKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 60
Query: 579 HEEVVQLIKDAGKCLSLKLVTPM 601
E+ I+ + L + +
Sbjct: 61 CVELAHEIRSCPSEIILLVWRMV 83
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 103 bits (259), Expect = 9e-27
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
I ++R + GFGF++ D+PV V +VDSG A+ G++ D ++ + +R V+
Sbjct: 16 KLQITIRRGKD---GFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 72
Query: 579 HEEVVQLIKDAGKCLSLKLVTP 600
E+ I+ + L +
Sbjct: 73 CVELAHEIRSCPSEIILLVWRV 94
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 99.3 bits (248), Expect = 2e-25
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
R + +Q+ + GFGF+V GD V+V SV G A G+K+GD I+ + V S
Sbjct: 9 QRCVIIQKDQH---GFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS 65
Query: 579 HEEVVQLIKDAGKCLSLKLVTP 600
H EVV+LIK +G ++L L+
Sbjct: 66 HLEVVKLIK-SGAYVALTLLGS 86
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 99.0 bits (247), Expect = 4e-25
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
++ R + +++ +N G+GF +R I+ ++ GS A+ G+K+ D +VA+ +
Sbjct: 4 GSSGRVVVIKKGSN---GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 60
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
V+ H+ VV++I+ G +L ++
Sbjct: 61 SVEALDHDGVVEMIRKGGDQTTLLVLDK 88
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 97.8 bits (244), Expect = 9e-25
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 519 PRSIQLQRANNSDTGFGFSVR------GDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
PR + L++ GFGF +R G + VD G A+ GM+ GD +VA+
Sbjct: 4 PRCLHLEK---GPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGE 60
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
V+ HEE V I+ G C+SL +V P
Sbjct: 61 SVEGLGHEETVSRIQGQGSCVSLTVVDP 88
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 97.0 bits (242), Expect = 2e-24
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSV---RGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
P+ +L + + G+GF + RG + V G A G++D D I+ + +V
Sbjct: 4 PKLCRLAK---GENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVL 60
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTP 600
P+E+VV I+ +GK ++L +
Sbjct: 61 DEPYEKVVDRIQSSGKNVTLLVCGK 85
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 96.2 bits (240), Expect = 3e-24
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
PR + +++ G+GF +R I+ ++ GS A+ G+K+ D +VA+ + V+
Sbjct: 6 PRVVVIKK---GSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVE 62
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTP 600
H+ VV++I+ G +L ++
Sbjct: 63 ALDHDGVVEMIRKGGDQTTLLVLDK 87
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 95.8 bits (239), Expect = 4e-24
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
PR L++ G+GF++ D + SVD GS A G++ D ++ + ++V+
Sbjct: 5 PRLCHLRK---GPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 61
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTP 600
H EVV IK L +V P
Sbjct: 62 GLRHAEVVASIKAREDEARLLVVGP 86
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 94.7 bits (236), Expect = 9e-24
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
PR L++ G+GF + G+ + V+ GS A+ G+ GD +V + +V+
Sbjct: 4 PRLCCLEK---GPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVE 60
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTP 600
H++VV I+ A + L +V P
Sbjct: 61 KETHQQVVSRIRAALNAVRLLVVDP 85
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 93.6 bits (233), Expect = 3e-23
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
PR +++ +G+GF++ D + SVD S A+ G++ D IV +
Sbjct: 7 MLRPRLCTMKK---GPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
++ H +VV I+ G L +V
Sbjct: 64 CMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 93.3 bits (232), Expect = 4e-23
Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRGD-----------APVIVASVDSGSLAQFGGMKDGD 564
W+ + + +++ +N FGF ++ ++ + S A G++ GD
Sbjct: 13 WSQRKLVTVEKQDN--ETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGD 70
Query: 565 FIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+ I + +++VV LI+ +G L+++ +
Sbjct: 71 VLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 92.4 bits (230), Expect = 1e-22
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRGD---------------APVI-VASVDSGSLAQFG 558
H +PR +++ + S++G+GF+VRG AP+ V++V G A
Sbjct: 3 HGGSPRVVRIVK---SESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA 59
Query: 559 GMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
G++ GD I+ + +V+ + H++VV LI+ K L L +++
Sbjct: 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 91.7 bits (228), Expect = 1e-22
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVR---GDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
PR L + +GFS++ G V + + +A G+ D ++ +
Sbjct: 6 SGQPRLCYLVK---EGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGE 62
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+V+ + HEEVV+ +K +G + LV
Sbjct: 63 NVEDASHEEVVEKVKKSGSRVMFLLVDK 90
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 90.1 bits (224), Expect = 5e-22
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
++++ + + +GF + P+ V +V +G A G + GD I+ + + +
Sbjct: 9 RHTVKIDK-DTLLQDYGFHISESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLS 66
Query: 579 HEEVVQLIKDAGKCLSLKLVTP 600
E V ++++A LS+ +V
Sbjct: 67 WERAVDILREAEDSLSITVVRC 88
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 90.3 bits (224), Expect = 1e-21
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
PR +++ +G+GF++ D + SVD S A+ G++ D IV +
Sbjct: 7 MLRPRLCTMKK---GPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
++ H +VV I+ G L +V
Sbjct: 64 CMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 89.1 bits (221), Expect = 2e-21
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRGDAPV---IVASVDSGSLAQFGGMKDGDFIV 567
S PR +L + +GF +R + ++ ++ GS A+ G+ DGD ++
Sbjct: 6 SGMASTFNPRECKLSKQEGQ--NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVL 63
Query: 568 AIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
I V H +VV+L++ +G ++L ++
Sbjct: 64 RINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 87.9 bits (218), Expect = 4e-21
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 518 APRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
PR +L + +GF +R + ++ ++ GS A+ G+ DGD ++ I V
Sbjct: 1 GPRESKLSKQEGQ--NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV 58
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEK 629
H +VV+L++ +G ++L ++ S+ +K +KE K
Sbjct: 59 DKEEHAQVVELVRKSGNSVTLLVLDG--------DSYEKAVKNQVDLKELDQEAK 105
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 91.4 bits (226), Expect = 4e-21
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRGDAP---VIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
PR +++ +G+GF++ D + SVD S A+ G++ D IV +
Sbjct: 7 MLRPRLCTMKK---GPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTP-MHKNNNVHHSHNSRIKGTESIKESKTSEKNQ 631
++ H +VV I+ G L +V + S+ + T+ + Q
Sbjct: 64 CMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQ 123
Query: 632 SPSSSITPSRKQIWNP 647
+S + + +P
Sbjct: 124 KENSREALAEAALESP 139
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 87.1 bits (216), Expect = 5e-21
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-----------DAPVIVASVDSGSLAQFGGMKDGDFIV 567
+ + L++ +N FGF ++ + VA V S AQ G+ GD I
Sbjct: 5 RKVLTLEKGDN--QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIA 62
Query: 568 AIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
++ +V+ H E+V +IK +G L L+ +
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 85.5 bits (212), Expect = 2e-20
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-----------DAPVIVASVDSGSLAQFGGMKDGDFIVA 568
I + + +GFS+R +V SV+ GS AQ G++ GD I
Sbjct: 4 PPIVIHSSGK---KYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITH 60
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
I V H +VV+L+ +G +SL+
Sbjct: 61 INGESVLGLVHMDVVELLLKSGNKISLRTTAL 92
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 84.1 bits (208), Expect = 9e-20
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----------------DAPVIVASVDSGSLAQFGGMKD 562
+++ LQ+ ++ GFGF +RG A + SVD G +A G++
Sbjct: 8 EKTVLLQKKDSE--GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 65
Query: 563 GDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
GDF++ + ++V H +VV +I+ G L +K+V
Sbjct: 66 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 84.6 bits (209), Expect = 9e-20
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRGD----------------APVIVASVDSGSL 554
S + +++ LQ+ ++ GFGF +RG A + SVD G +
Sbjct: 20 SGSDYIIKEKTVLLQKKDS--EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGV 77
Query: 555 AQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVT 599
A G++ GDF++ + ++V H +VV +I+ G L +K+V
Sbjct: 78 AWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 122
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 81.3 bits (201), Expect = 4e-19
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRGDAP-VIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
++ R I + + FGF+++ D P + VASV++GS A+F ++ D I+AI +
Sbjct: 1 QFSDMR-ISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTK 59
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKL 597
++ +E + + A + L +
Sbjct: 60 FSYNDSKEWEEAMAKAQETGHLVM 83
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 80.0 bits (198), Expect = 2e-18
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
P S+ L+ + +GF + G AP+ ++ V +GS A + GD I AI
Sbjct: 9 PHSVTLRG----PSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGEST 64
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H E IK L+L +
Sbjct: 65 ELMTHLEAQNRIKGCHDHLTLSV 87
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 78.4 bits (194), Expect = 4e-18
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
S+ L +GF ++G + P+ ++ + GS A + GD +VAI +
Sbjct: 2 AYSVTLTG----PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNT 57
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
H E IK A LSL L
Sbjct: 58 DTMTHLEAQNKIKSASYNLSLTL 80
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 78.6 bits (194), Expect = 7e-18
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 531 DTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
+GF + G + P+++ + GS A + GD I+AI + H + I
Sbjct: 14 PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRI 73
Query: 587 KDAGKCLSLKL 597
K A L LK+
Sbjct: 74 KAASYQLCLKI 84
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 77.7 bits (192), Expect = 8e-18
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
++ + +GF + G P+IV V A+ ++ GD IVAI +
Sbjct: 7 GLTVDVAG----PAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSA 62
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H E I+ + L L+L
Sbjct: 63 ENMLHAEAQSKIRQSASPLRLQL 85
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 78.8 bits (194), Expect = 1e-17
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 35/117 (29%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRG--------------------------------DAP 543
P+++ L+R + GFGF++R
Sbjct: 6 SGGPKTVTLKRTSQ---GFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDT 62
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ V V G A G+ GD I+ + V + +V+ LI+++ L L ++
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK 119
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 76.9 bits (190), Expect = 1e-17
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 517 TAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDR 572
+ ++ + +GF + G P++V V A+ ++ GD IVAI
Sbjct: 1 SMALTVDVAG----PAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGE 56
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKL 597
+ H E I+ + L L+L
Sbjct: 57 SAEGMLHAEAQSKIRQSPSPLRLQL 81
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 76.2 bits (188), Expect = 3e-17
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 531 DTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
+GF + G + P+ ++ V GS A + GD I AI + H E I
Sbjct: 12 PGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRI 71
Query: 587 KDAGKCLSLKLVTPMHKNN 605
K L+L + H+++
Sbjct: 72 KGCTDNLTLTVARSEHESD 90
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 75.4 bits (186), Expect = 5e-17
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 531 DTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
+GF ++G + P+ ++ + G A G+ GD++++I + H E I
Sbjct: 12 PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKI 71
Query: 587 KDAGKCLSLKL 597
+ G+ LSL L
Sbjct: 72 RACGERLSLGL 82
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 75.9 bits (187), Expect = 5e-17
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 533 GFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD 588
+GF ++G + P+ ++S+ G A ++ GD +++I + H E IK
Sbjct: 16 PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
Query: 589 AGKCLSLKL 597
L++ L
Sbjct: 76 CTGSLNMTL 84
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 75.0 bits (185), Expect = 6e-17
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
PR+I + + +S GF + + S+ S A G+ I I ++V
Sbjct: 5 PRTITMHK--DSTGHVGFIFKNG---KITSIVKDSSAARNGLLTEHNICEINGQNVIGLK 59
Query: 579 HEEVVQLIKDAGKCLSLKLV 598
++ ++ +G +++ ++
Sbjct: 60 DSQIADILSTSGTVVTITIM 79
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 74.6 bits (184), Expect = 9e-17
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 531 DTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI 586
+GF ++G + P+ ++S+ G A ++ GD +++I + + H E I
Sbjct: 12 PAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKI 71
Query: 587 KDAGKCLSLKL 597
K L++ L
Sbjct: 72 KGCTGSLNMTL 82
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 71.6 bits (176), Expect = 1e-15
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
+ L + + + FGFSV + V V ++ GG+K D ++ + +
Sbjct: 7 LHKVTLYKDSGME-DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTR 65
Query: 576 WSPHEEVVQLIKDAGKCLSL 595
VV LI ++G L L
Sbjct: 66 DFDCCLVVPLIAESGNKLDL 85
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 72.6 bits (178), Expect = 1e-15
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQ--FGGMKDGDFIVAIGDR 572
I+++ + + FGF+V+G PVIV+ V G+ A + +GD +V I R
Sbjct: 16 LVLIRMKP--DENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 73
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLV 598
D+ H++VV IK + + S +L+
Sbjct: 74 DIAEHTHDQVVLFIKASCERHSGELM 99
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 71.4 bits (175), Expect = 3e-15
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
+ + L + G ++RG + + VD GS A+ G+K GD I+ + R
Sbjct: 21 EKKVNLVLGDGR--SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSF 78
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQSPS 634
H+E V+L+K + L L + ++ E+K + PS
Sbjct: 79 LNILHDEAVRLLKSSRH-LILTVKDV-----------GRLPHARTTVDETKWIASSSGPS 126
Query: 635 S 635
S
Sbjct: 127 S 127
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 70.5 bits (173), Expect = 4e-15
Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 514 HHWTAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVA 568
R + L + ++ G G S+ G P++++ + G A + GG+ GD I+A
Sbjct: 5 QGVGPIRKVLLLKEDHE--GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILA 62
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHH 609
+ +++ + H+E V ++ + ++V ++++ HH
Sbjct: 63 VNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHHH 103
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 71.0 bits (174), Expect = 5e-15
Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG--DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
PR +++Q+ G S+ + V+ V GS+A G++ GD ++ +++
Sbjct: 20 PRHVKVQK---GSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRS 76
Query: 577 SPHEEVVQLIKDAGKCLSL 595
+ ++ +I +++
Sbjct: 77 ATEQQARLIIGQQCDTITI 95
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 70.4 bits (172), Expect = 5e-15
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
+SI +++++ + +GFS+ + V SV LA G+K GD I+ I +R
Sbjct: 16 TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRA 75
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ + L ++
Sbjct: 76 ADALNSSMLKDFLSQPSLGLLVRTYPE 102
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 69.2 bits (170), Expect = 8e-15
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPV---IVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
++ + + GFGF++ V + + G+K+GD IV + ++V+
Sbjct: 4 LITVHIVK---GPMGFGFTIADSPGGGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQ 58
Query: 576 WSPHEEVVQLIKDAGKCLSLKLV 598
H +VV ++ ++ K + L+
Sbjct: 59 ALTHNQVVDMLVESPKGSEVTLL 81
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 69.7 bits (171), Expect = 9e-15
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFI 566
S S+++++ + GFSVRG + V+ V+ GS A+ G+ GD I
Sbjct: 3 SGSSGSDIIHSVRVEK--SPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKI 60
Query: 567 VAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ ++ + V+++ + + L + +
Sbjct: 61 TEVNGLSLESTTMGSAVKVLTSSSR-LHMMV 90
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 68.9 bits (169), Expect = 2e-14
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
R + L+R + G GFS+RG + V+ V+ GSLA+ G++ GD I+ + D+ +
Sbjct: 9 VRLVSLRR-AKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSL 67
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLVT 599
H E V+ +K + K L L + +
Sbjct: 68 ARVTHAEAVKALKGSKK-LVLSVYS 91
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 68.2 bits (167), Expect = 2e-14
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 518 APRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWS 577
+ L R + GFSV+ I+ S+ G +A+ GG++ G I+ I + V +
Sbjct: 10 GNVTTVLIRRPDLRYQLGFSVQNG---IICSLMRGGIAERGGVRVGHRIIEINGQSVVAT 66
Query: 578 PHEEVVQLIKDAGKCLSLKLV 598
PHE++V ++ +A + +K +
Sbjct: 67 PHEKIVHILSNAVGEIHMKTM 87
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 68.1 bits (167), Expect = 2e-14
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRD 573
R + +++A+ G G S++G P++++ + G A Q + GD I+++ D
Sbjct: 5 RRRVTVRKADA--GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKL 597
+ + H+E VQ +K GK + L++
Sbjct: 63 LSSATHDEAVQALKKTGKEVVLEV 86
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 71.3 bits (175), Expect = 2e-14
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAI 569
+ ++L + + G +V G D V+++ G +A + + GD+I A+
Sbjct: 4 SFKGSTVVELMKKEGT--TLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESK 625
++ H+E++ L+K+ G+ + L++ + + S R KE
Sbjct: 62 NGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGN 117
Score = 68.6 bits (168), Expect = 2e-13
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 506 PVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLA-Q 556
P + L + N FGF +RG PV++ V G A +
Sbjct: 94 PPVSIQGSSVMFRTVEVTLHKEGN---TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADR 150
Query: 557 FGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
G +K GD ++++ + + H E + ++K G+ +L +
Sbjct: 151 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 68.5 bits (168), Expect = 2e-14
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFIVAIGD 571
PR + L++ GF++RG + ++ V S A G+++GD ++A+ D
Sbjct: 13 QFLPRIVTLKK--PPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVND 70
Query: 572 RDVKWSPHEEVVQLIKDAGK-CLSLKLVTP 600
D + H + V+++K A + + ++ +
Sbjct: 71 VDFQDIEHSKAVEILKTAREISMRVRFFSG 100
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 70.2 bits (172), Expect = 3e-14
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 519 PRSIQLQRANNSDTGFGFSVR-GDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWS 577
PR + L + + D G ++ D + V V + S A G++ GD ++ I +
Sbjct: 5 PREVILCK--DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 578 PHEEVVQLIKDAG 590
++ +++K A
Sbjct: 63 SSDKAHKVLKQAF 75
Score = 47.1 bits (112), Expect = 2e-06
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSP 578
P + +S GF + S+ S A G+ I I ++V
Sbjct: 87 PFERTITMHKDSTGHVGFIFKNGKI---TSIVKDSSAARNGLLTEHNICEINGQNVIGLK 143
Query: 579 HEEVVQLIKDAGKCLSLKLV 598
++ ++ +G +++ ++
Sbjct: 144 DSQIADILSTSGTVVTITIM 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.1 bits (184), Expect = 5e-14
Identities = 98/630 (15%), Positives = 167/630 (26%), Gaps = 257/630 (40%)
Query: 95 LSTRDRKTPRSFKYFSKEPVMPMIPLGLKETKEIDVREPFKDFILEHYSEDGTAYEDSVS 154
STR P + + S E V+ +P ++E F + E +G A +D +
Sbjct: 4 YSTR----PLTLSHGSLEHVLL-VPTASFFIAS-QLQEQFNKILPE--PTEGFAADDEPT 55
Query: 155 EFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIERRFFPPDRS-----LGI---YFEYDSL 206
+ L+ ++ L ++ P L + FE L
Sbjct: 56 ----------------TPAELVGKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 207 TG---------VPSCQRTIAFEKACVLFNMAAIYTQMAAKQDRLTSTGLDQAVDNFLRAA 257
G + T + ++ N Y R + A RA
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSA---LFRAV 149
Query: 258 GT--------F-------TY---LQENFTNAPSMDLGPPMLDMLIQLMLAQARECLFQKL 299
G F Y L++ + ++ LI+
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLY------QTYHVLVGDLIKFS------------ 191
Query: 300 QLQTTEKCDFQHMLELAQEAAQVAEVY---MSLLSLITVPEVK---DY---VPLSWVSLI 350
+ + EL + +V+ +++L + P DY +P+S LI
Sbjct: 192 ---------AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LI 241
Query: 351 QVKKEHYLALSHYY----------------------CASGLLT-------KSLANLSSTA 381
V + L+HY + GL+T S + +
Sbjct: 242 GV-----IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 382 QTVLSYL-HI---PQENKKNLILEFEPEDESQRK-------QLGVAHLRSALLFHEESQR 430
+ ++ L I E N L ++S L +++L +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ----DY 352
Query: 431 IYRMCREL-RNKQ---ALF----QVLVQAHTLTLEMYADVEEEDEFNTMYE---APN--- 476
+ + L KQ +L ++V +L Y N AP+
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL--YG-------LNLTLRKAKAPSGLD 403
Query: 477 ----------ITPSTKFQLTLTPPDFAHLP---------VEDLF--------KQLG-PV- 507
+ S +F L + P F H +DL K + PV
Sbjct: 404 QSRIPFSERKLKFSNRF-LPVASP-F-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 508 ---------------------AIFSAKHHWTA-------------PRSI----QLQRANN 529
I W P L N
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 530 SDTGFGFSVRGDAPVIVA-SVDSGSLAQFG 558
TG VR VIVA ++D +G
Sbjct: 521 DGTG----VR----VIVAGTLDINPDDDYG 542
Score = 59.3 bits (143), Expect = 4e-09
Identities = 69/470 (14%), Positives = 123/470 (26%), Gaps = 181/470 (38%)
Query: 290 QARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLIT----VPEVKDYVPLS 345
Q +E F K+ + TE E AE+ L ++ +V + +
Sbjct: 32 QLQEQ-FNKILPEPTEG------FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 346 WVSLIQVKKE-------HYLALS-----------------HYYCASGLLTKSLANLSSTA 381
+ L + + H LA +Y A + + S++A
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 382 QTVLSYLHIPQENKKNLILEF----EPE---DESQRKQLGVAHLRSALLFHEESQRIYRM 434
L E L+ F + +E LR L+ Y
Sbjct: 145 ---L--FRAVGEGNAQLVAIFGGQGNTDDYFEE----------LRD--LYQ-----TYH- 181
Query: 435 CRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMY----------EAPNITPSTKFQ 484
L L++ TL + + ++ E P+ TP +
Sbjct: 182 --------VLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDY- 230
Query: 485 LTLTPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGD--- 541
+P+ +G + H+ + + G +
Sbjct: 231 -------LLSIPIS--CPLIG---VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 542 APVIVASVDSGSLAQFGGMKDGDFIVA----------IGDRDVKWSPH----EEVVQLIK 587
V +A DS F V+ IG R + P+ +++
Sbjct: 279 TAVAIAETDSWE----------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 588 DAGKCLSLKLVTPM--------------------H--KNNNVHHS-HNSR----IKG-TE 619
+ + + +PM H V S N + G +
Sbjct: 329 ENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 620 SI--------KESKTSEKNQS--PSSSITPSRK--------QIWNPFKKH 651
S+ K S +QS P S RK + +PF H
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFS----ERKLKFSNRFLPVASPF--H 428
Score = 55.1 bits (132), Expect = 6e-08
Identities = 55/317 (17%), Positives = 98/317 (30%), Gaps = 118/317 (37%)
Query: 372 KSLANLSSTAQTV-------------LSYLHIPQENKKNLILEFEPEDESQRKQLGVAHL 418
L S AQ V S L I N NL + F
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG-------------- 1678
Query: 419 RSALLFHEESQRIYRMCRELRNKQAL-FQVLVQAHTLTLEMYADVEEEDEFNTMYEAP-- 475
E+ +RI RE N A+ F+ +V T +++ ++ E + + +
Sbjct: 1679 -------EKGKRI----RE--NYSAMIFETIVDGKLKTEKIFKEINEHST-SYTFRSEKG 1724
Query: 476 --NITPSTKFQ--LTLT--------------PPD--FA-H--------------LPVEDL 500
+ T T Q LTL P D FA H + +E L
Sbjct: 1725 LLSATQFT--QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 501 FKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGM 560
+ + V R + +Q A D G + + +++ G +A
Sbjct: 1783 VE-V--VFY----------RGMTMQVAVPRDEL------GRSNYGMIAINPGRVAASFSQ 1823
Query: 561 KDGDFIVAIGDRDVKW--------SPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHN 612
+ ++V + W +++ V AG +L VT + +
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYV--A--AGDLRALDTVTNVLNFIKLQ---- 1875
Query: 613 SRIKGTESIKESKTSEK 629
+I +++S + E+
Sbjct: 1876 -KID-IIELQKSLSLEE 1890
Score = 37.0 bits (85), Expect = 0.026
Identities = 38/206 (18%), Positives = 62/206 (30%), Gaps = 71/206 (34%)
Query: 5 RSQQRA-----IAQMVTYGDSKHNQRNV------------AQLQAT---TNRKLKETVAL 44
R + ++ DS N V Q+Q TN L +
Sbjct: 309 RCYEAYPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 45 ELSFVNS-----------NLQLLKEQLAELNSSVELYQN----DKRSLDSVESVYRLFSL 89
E+S VN +L L L + + L Q+ +R L F L
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL----KFSNRF-L 421
Query: 90 MILFMLSTRDRKTPRSFKYFSK--EPVMPMIPLGLKETKEI----DVREPFKDFILEHYS 143
+ +P + S P +I L + D++ P D +
Sbjct: 422 PVA---------SP----FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD------T 462
Query: 144 EDGT---AYEDSVSEFMDMRQAMRTP 166
DG+ S+SE + + +R P
Sbjct: 463 FDGSDLRVLSGSISERI-VDCIIRLP 487
Score = 35.0 bits (80), Expect = 0.086
Identities = 44/283 (15%), Positives = 80/283 (28%), Gaps = 99/283 (34%)
Query: 149 YEDSVSEFMDMRQAMRTPNRDNSGISLL---FQYYNQLYFIERRFFPPDRSLGIYFEYDS 205
Y+ S D+ +D G S+L L F ++ I Y +
Sbjct: 1636 YKTS-KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI----HFGGEKGKRIRENYSA 1690
Query: 206 LTGVPSCQRTIAFEKACVLFNMAAI------------------YTQ-------MAAKQDR 240
+ + EK +F +TQ AA +D
Sbjct: 1691 MIFETIVDGKLKTEK---IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED- 1746
Query: 241 LTSTGLDQAVDNF----------LRA-AGTFT-------------YLQENFTNAPSMDLG 276
L S GL A F L + A + +Q P +LG
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV---AVPRDELG 1803
Query: 277 PPMLDML------IQLMLAQ-ARECLFQKLQLQTTEKCDFQHMLELAQEAA-------QV 322
M+ + +Q A + + +++ +T E Q
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----------EIVNYNVENQQY 1853
Query: 323 A--------EVYMSLLSLITVPEVKDYVPLSWVSL-IQVKKEH 356
+ ++L+ I + ++ D + L SL ++ + H
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKI-DIIELQ-KSLSLEEVEGH 1894
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 66.9 bits (164), Expect = 5e-14
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRD 573
++L + +D G GF++ G ++P+ ++ V G +A + GG+K GD ++++
Sbjct: 6 SGVVELPK---TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS 62
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLV 598
V+ HE+ V+L+K A + L +
Sbjct: 63 VEGEQHEKAVELLKAAQGSVKLVVR 87
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 67.0 bits (164), Expect = 6e-14
Identities = 17/85 (20%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 518 APRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRD 573
+ + I+L + + G +++ D +IVA + G A + G + GD + +
Sbjct: 4 SVKIIRLVK---NREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIP 60
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLV 598
V+ EE++Q++ + ++ K++
Sbjct: 61 VEDKRPEEIIQILAQSQGAITFKII 85
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 67.5 bits (165), Expect = 6e-14
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRG-----------DAPVIVASVDSGSLA-QFG 558
S + + R + GFGF + P + + GS A +
Sbjct: 3 SGSSGSLQTSDVVIHR--KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA 60
Query: 559 GMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+K GD I+A+ + + PH ++V+LIKDAG ++L+++
Sbjct: 61 KLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRII 100
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 67.5 bits (165), Expect = 7e-14
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG-------------DAPVIVASVDSGSLA-QFGGM 560
HW PR +++ R + G S+ G + + V S A + +
Sbjct: 12 HWGPPRIVEIFR--EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNAL 69
Query: 561 KDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
K GD I+ + D++ + H E V+ IK+AG + + +
Sbjct: 70 KTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSL 109
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 67.0 bits (164), Expect = 9e-14
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGD 571
PR I L + TG GF++ G + V+ + +G A G ++ GD I+++
Sbjct: 13 AREPRKIILHK---GSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNG 69
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNS 613
+++ + HE+ +K AG+ +++ + + S S
Sbjct: 70 VNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPS 111
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 66.4 bits (162), Expect = 1e-13
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQF--GGMKDGDFIVAIGDR 572
I+++ + + FGF+V+G PVIV+ V G+ A + +GD +V I R
Sbjct: 18 LVLIRMKP--DENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 75
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLV 598
D+ H++VV IK + + S +L+
Sbjct: 76 DIAEHTHDQVVLFIKASCERHSGELM 101
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 66.2 bits (162), Expect = 1e-13
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
PR I + R TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 12 PRRIVIHR---GSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Query: 575 KWSPHEEVVQLIKDAGKCLSL 595
+ + HE+ +K+AG+ +++
Sbjct: 69 RNASHEQAAIALKNAGQTVTI 89
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 66.2 bits (162), Expect = 1e-13
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQFGGMKDGD 564
++ + R G G S+ G D + ++ V A G++ GD
Sbjct: 12 IEEEELTLTILRQTG---GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGD 68
Query: 565 FIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
++ + ++ + H E V+ ++ AG + +++
Sbjct: 69 KLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 65.5 bits (160), Expect = 2e-13
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVR--GDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVK 575
+ + + + S+ G ++ G + + G + + GD I +I ++
Sbjct: 6 EKEVNVYK---SEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIV 62
Query: 576 WSPHEEVVQLIKD--AGKCLSLKLVTPM 601
H +V + +K+ + ++KL+ P
Sbjct: 63 GWRHYDVAKKLKELKKEELFTMKLIEPK 90
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 65.5 bits (160), Expect = 3e-13
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAI 569
++ R + L + ++ G G S+ G P++++ + G A + GG+ GD I+A+
Sbjct: 24 YFQGIRKVLLLKEDHE--GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAV 81
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+++ + H+E V ++ + ++V
Sbjct: 82 NGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 65.0 bits (159), Expect = 3e-13
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQFGGMKDGDFIVA 568
++ + R G G S+ G D + ++ V A G++ GD ++
Sbjct: 4 ELTLTILRQTG---GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLE 60
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ ++ + H E V+ ++ AG + +++
Sbjct: 61 VNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 66.0 bits (161), Expect = 3e-13
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLA-QFGGMKDGDFI 566
T + L + TGFG ++G +P +++ +++ S A + G ++ GD +
Sbjct: 13 HTETTEVVLTA--DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRV 70
Query: 567 VAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+AI + S EE QL++D+ + L
Sbjct: 71 MAINGIPTEDSTFEEANQLLRDSSITSKVTLE 102
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 65.5 bits (160), Expect = 3e-13
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWS 577
+ +++++ D G +VR VI++ + G A + G + +GD ++ I +++
Sbjct: 27 KIVRIEK--ARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGK 84
Query: 578 PHEEVVQLIKDAGKCLSLKLV 598
EV L+ D L+ L+
Sbjct: 85 DVNEVFDLLSDMHGTLTFVLI 105
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 65.2 bits (159), Expect = 4e-13
Identities = 13/88 (14%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 517 TAPRSIQLQRANNSDTGFGFSVRG-----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIG 570
+ P +++ + S G S+ + + + + S+ + G + GD I++I
Sbjct: 14 SGPLMVEIVKTPGS--ALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSID 71
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
++ E +L+ + + L+++
Sbjct: 72 GTSMEHCSLLEATKLLASISEKVRLEIL 99
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 64.7 bits (158), Expect = 4e-13
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 533 GFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
+GF+++G P+ V+ ++ G A M+ GD +V I + S +E + LIK
Sbjct: 22 PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIK 80
Query: 588 DAGKCLSLKL 597
+ + L L +
Sbjct: 81 GSFRILKLIV 90
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 67.5 bits (165), Expect = 5e-13
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 494 HLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRG---------DAPV 544
H + K+ G + + + G GFS+ G D +
Sbjct: 73 HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI 132
Query: 545 IVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
V + G A + G ++ GD I+A+ ++ HE+ V +K+ + LK+ P
Sbjct: 133 YVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 189
Score = 66.7 bits (163), Expect = 8e-13
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 23/139 (16%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLA-QFGGMKDGDFIVA 568
I L+R N+ G GFS+ G D + + + G A Q G ++ D I+
Sbjct: 6 YEEITLERGNS---GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTE----SIKES 624
+ + DV+ H V+ +K+AG ++L K IKG + SI
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGS--IVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 120
Query: 625 KTSEKNQSPS----SSITP 639
++ + + I
Sbjct: 121 VGNQHIPGDNSIYVTKIIE 139
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 65.1 bits (159), Expect = 6e-13
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
PR I + R TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 15 PRRIVIHR---GSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ + HE+ +K+AG+ +++
Sbjct: 72 RNASHEQAAIALKNAGQTVTIIA 94
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 64.4 bits (157), Expect = 6e-13
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRG------DAPVIVASVDSGSLA-QFGGMKDG 563
S+ R + L++ G G ++ ++A++ G A + G + G
Sbjct: 2 SSGSSGDNCREVHLEK--RRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIG 59
Query: 564 DFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
D + AI + P +++ S+ L
Sbjct: 60 DRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 66.8 bits (163), Expect = 8e-13
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 494 HLPVEDLFKQLGPVA----IFSAKHHWTAPRSIQLQRANNSDTGFGFSVRG-DAPVIVAS 548
L V LF A +F A ++ L + + G S+ + +A
Sbjct: 85 TLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMK--KAGKELGLSLSPNEIGCTIAD 142
Query: 549 VDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ G + ++ GD I ++ P + L K A +S+++ P
Sbjct: 143 LIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP 195
Score = 44.9 bits (106), Expect = 2e-05
Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 12/127 (9%)
Query: 522 IQLQRANNSDTGFGFSVRG------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
I+L+ G V G ++ V +K D I I +
Sbjct: 22 IELKVEKK---PMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPI 78
Query: 575 KWSP--HEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQS 632
+V QL + V + + K + + S + +
Sbjct: 79 HVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGC 138
Query: 633 PSSSITP 639
+ +
Sbjct: 139 TIADLIQ 145
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 66.5 bits (162), Expect = 8e-13
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 493 AHLPVEDLFKQLGPVAIFSAKHHWTA-----PRSIQLQRANNSDTGFGFSVRG----DAP 543
+ LP+ D + L P+ T + ++L R G G SVRG
Sbjct: 54 SRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDR--LHPEGLGLSVRGGLEFGCG 111
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ ++ + G A G++ GD IV I + HEEV+ LI+ K +S+K+
Sbjct: 112 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIR-TEKTVSIKV 164
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 63.5 bits (155), Expect = 1e-12
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG--DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571
W ++L +G GF + G + V+V ++ G LA G ++ GD I+ IG
Sbjct: 12 CWGHVEEVELIN---DGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGG 68
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKL 597
+V+ E+V Q++++ G + + +
Sbjct: 69 TNVQGMTSEQVAQVLRNCGNSVRMLV 94
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 63.2 bits (154), Expect = 1e-12
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDA--PVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKW 576
R IQ ++ ++ G ++ + VA + G + + G + GD I+ I +V
Sbjct: 14 RLIQFEK--VTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 577 SPHEEVVQLIKDAGKCLSLKLV 598
+++ + +K+ +SLK++
Sbjct: 72 HSVDQLQKAMKETKGMISLKVI 93
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 63.5 bits (155), Expect = 1e-12
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
+++L+R GFGFS+RG + + V + A + G M+ GD I+ I
Sbjct: 26 YTVELER---GAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETT 82
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
K H ++LIK+ G+ + L L
Sbjct: 83 KNMKHSRAIELIKNGGRRVRLFL 105
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 64.1 bits (156), Expect = 2e-12
Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVK 575
S++L + G GF V+ PVI++ + G A Q G ++ GD I+A+ DR +
Sbjct: 10 ISVRLFKRKVG--GLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 67
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQSPSS 635
++ +++++ + L+ + H G + K + ++ P+
Sbjct: 68 DLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDG--TPKTIRVTQPLGPPTK 125
Query: 636 SI 637
++
Sbjct: 126 AV 127
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 63.1 bits (154), Expect = 2e-12
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
+ L+R ++GFGF + G P+++ +V + A + G + GD +V + V
Sbjct: 11 LDVHLRR---MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLV 598
H V+ L+ A + + L
Sbjct: 68 AGKTHRYVIDLMHHAARNGQVNLT 91
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 62.7 bits (152), Expect = 2e-12
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVR-----GDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDV 574
SI +++++ + +GFS+ G + V SV LA G+K GD I+ I +R
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 67
Query: 575 KWSPHEEVVQLIKDAGKCLSLK 596
+ + L ++
Sbjct: 68 DALNSSMLKDFLSQPSLGLLVR 89
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 62.7 bits (153), Expect = 2e-12
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
+++L+R G ++ G P+I++S+ G LA + G + GD I+AI +
Sbjct: 7 YTVELKRYGG---PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLVTP 600
K P E + L++ AG+ ++LK+
Sbjct: 64 KGKPLSEAIHLLQMAGETVTLKIKKQ 89
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGD 571
S++L R GFG ++ G D P+ V + A + G ++ GD ++ I
Sbjct: 12 HFSVELVR---GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ H + V+ I+ G L L +
Sbjct: 69 ESTQGLTHAQAVERIRAGGPQLHLVI 94
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 62.7 bits (153), Expect = 2e-12
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 522 IQLQRANNSDTGFGFSVRG-DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPH 579
+ L + + G S+ + +A + G + ++ GD I ++ P
Sbjct: 12 VDLMK--KAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 69
Query: 580 EEVVQLIKDAGKCLSLKLVTP 600
+ L K A +S+++ P
Sbjct: 70 QVSYALFKGANGKVSMEVTRP 90
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 62.4 bits (152), Expect = 3e-12
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG--DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
++ + + GFGF++ + +D G+ +GD IV I ++V+
Sbjct: 11 LMTLTIVK---GAQGFGFTIADSPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQN 64
Query: 577 SPHEEVVQLIKDAGKCLSLKLV 598
H EVV ++KD L+
Sbjct: 65 LSHTEVVDILKDCPIGSETSLI 86
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 62.8 bits (153), Expect = 3e-12
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQFGGMKDGDFIVA 568
++ L R GFG ++ G + ++++ V G A+ G +++ D +
Sbjct: 8 QHTVTLHR--APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAM 64
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ + H VQ ++ +GK + +
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 62.5 bits (152), Expect = 4e-12
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQFGGMKDGDFI 566
S + + + + G G S+ + ++ V GSL+ G++ GD I
Sbjct: 8 SPGNRENKEKKVFISL--VGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQI 65
Query: 567 VAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHK 603
V + D H+E V ++K + L++ +V +
Sbjct: 66 VEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGR 101
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 61.5 bits (150), Expect = 4e-12
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
+ I L R +TGFGF + G P+ + + A G ++ GD ++++ V
Sbjct: 4 QDIFLWR---KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLV 598
H+ VVQL++ A K + L
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLT 84
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 62.1 bits (151), Expect = 4e-12
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVK 575
S++L + G GF V+ PVI++ + G A Q G ++ GD I+A+ DR +
Sbjct: 3 ISVRLFK--RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGT 618
++ +++++ + L+ + H GT
Sbjct: 61 DLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGT 103
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 62.1 bits (151), Expect = 5e-12
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRD 573
P + LQ+ ++ G S+ G + + V + A G + GD I + R
Sbjct: 25 PGKVTLQK--DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS 82
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKL 597
+K EV ++I++ +++
Sbjct: 83 IKGKTKVEVAKMIQEVKGEVTIHY 106
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 62.1 bits (151), Expect = 6e-12
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQFGGMKDGDFIVA 568
++ LQ+ +S GFG +V G + ++++ V G A G +++ D +V
Sbjct: 15 QYTVTLQK--DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVM 71
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ ++ H VQ ++ +GK ++ +
Sbjct: 72 VNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 61.6 bits (150), Expect = 6e-12
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 522 IQLQRANNSDTGFGFSVRG-DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPH 579
+ L + + G S+ + +A + G + ++ GD I ++ P
Sbjct: 6 VDLMK--KAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 63
Query: 580 EEVVQLIKDAGKCLSLKLVTP 600
+ L K A +S+++ P
Sbjct: 64 QVCYALFKGANGKVSMEVTRP 84
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 61.6 bits (150), Expect = 6e-12
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
++ +++ GFGFS+RG + V + A + G M+ GD I+ I
Sbjct: 13 FTVDMEK---GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 575 KWSPHEEVVQLIKDAGKCLSLKL 597
+ H ++LIK G+ + L L
Sbjct: 70 RDMTHARAIELIKSGGRRVRLLL 92
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 61.7 bits (150), Expect = 7e-12
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 511 SAKHHWTAPRSIQLQR----ANNSDTGFGFSVRG---------DAPVIVASVDSGSLA-Q 556
S+ H+ I++ R S G G + G + +A + G A Q
Sbjct: 5 SSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQ 64
Query: 557 FGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
G + +G ++ + +EEV +I + +
Sbjct: 65 TGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 63.6 bits (155), Expect = 9e-12
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLA-QFGGMKDGDFIVAI 569
+ L + GFG ++G +P +++ +++ S A + G ++ GD ++AI
Sbjct: 7 TTEVVLTADPVT--GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSR 614
+ S EE QL++D+ + L +V S +
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTF 109
Score = 59.8 bits (145), Expect = 2e-10
Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 494 HLPVEDLFKQLGPVAIFSAKHHWTAPRSI-------QLQRANNSDTGFGFSVRG------ 540
L + + + + + S+ ++ G ++
Sbjct: 74 FEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKP 133
Query: 541 DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
P++++ + GS+A + G ++ GD ++AI + + E+ VQ+++ + LK+
Sbjct: 134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 60.7 bits (148), Expect = 9e-12
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDR 572
+ L + N FGF +RG PV++ SV G A + G +K GD ++++
Sbjct: 7 VTLHKEGN---TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGI 63
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKL 597
+ + H E + ++K G+ +L +
Sbjct: 64 RLLGTTHAEAMSILKQCGQEAALLI 88
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 61.4 bits (149), Expect = 1e-11
Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRGDAPVI-VASVDSGSLAQF-GGMKDGDFIVA 568
++ +L + G G V + P + ++ + + A G ++ GD +++
Sbjct: 20 ASVSSLNKVIQTKLTV---GNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLIS 76
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+G +V E ++L+++ L++
Sbjct: 77 VGHANVLGYTLREFLKLLQNITIGTVLQIK 106
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 60.4 bits (147), Expect = 1e-11
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-------------DAPVIVASVDSGSLA-QFGGMKDGD 564
PR ++L R + G S+ G + + V S A + G +K GD
Sbjct: 5 PRRVELWREPSK--SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 62
Query: 565 FIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
IV + D++ + HE+ V+ I+ AG + +
Sbjct: 63 RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 60.1 bits (146), Expect = 1e-11
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDA--PVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKW 576
R +Q Q+ N+D G +++ + IVA + G + + G + GD I I V
Sbjct: 3 RLVQFQK--NTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60
Query: 577 SPHEEVVQLIKDAGKCLSLKLV 598
E++ +++++ ++ K+V
Sbjct: 61 QTVEQLQKMLREMRGSITFKIV 82
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 59.8 bits (145), Expect = 2e-11
Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVR-GDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWS 577
R + +++ + G + R +++A + G + Q G + GD I + + V
Sbjct: 8 RMVGIRK--TAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSD 65
Query: 578 PHEEVVQLIKDAGKCLSLKLV 598
+ +L+++A + LK++
Sbjct: 66 -PRALQELLRNASGSVILKIL 85
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 60.6 bits (147), Expect = 2e-11
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG--DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKW 576
+ ++ ++ G + G D + VA V S A G+++GD I+ + + D
Sbjct: 30 MKLVKFRK----GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTN 85
Query: 577 SPHEEVVQLIKDAGKCLSLKLV 598
EE V + D K + ++
Sbjct: 86 IIREEAVLFLLDLPKGEEVTIL 107
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 60.8 bits (147), Expect = 2e-11
Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 17/117 (14%)
Query: 514 HHWTAPRSIQLQRANNSDT-GFGFSVRG----------------DAPVIVASVDSGSLAQ 556
+ + + +++ + + GFS+ G D + V V G A+
Sbjct: 19 YFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE 78
Query: 557 FGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNS 613
G++ GD I+ + D+ H++ + + + + LVT V S S
Sbjct: 79 IAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS 135
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 59.6 bits (145), Expect = 4e-11
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 521 SIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDR 572
+++L+R + G G + + + ++ GS A G + GD I+ +
Sbjct: 11 TVELERGPS---GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNS 613
+ + V LI+ GK + + + HS S
Sbjct: 68 SLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPS 108
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 59.9 bits (145), Expect = 4e-11
Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-------------DAPVIVASVDSGSLA-QFGGMKDGDF 565
R ++L + ++ GF +R + ++ + G LA G + D
Sbjct: 31 RRVRLCK-YGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDE 89
Query: 566 IVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPMHKN 604
++ + +V ++V ++ + L + + +N
Sbjct: 90 VLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN 128
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 58.9 bits (143), Expect = 4e-11
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLA-QFGGMKDGDFIVA 568
+ L + FG + + + + S A G +K GD I++
Sbjct: 7 HMVTLDKTGKK--SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ +DV+ S + V+ LIK+A + L++ T
Sbjct: 65 LNGKDVRNSTEQAVIDLIKEADFKIELEIQTF 96
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 59.5 bits (144), Expect = 4e-11
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 511 SAKHHWTAPR--SIQLQRANNSDTGFGFSVRGDAP-VIVASVDSGSLAQFGGMKDGDFIV 567
A + A +I L + GFGF++ V + G++ GD I
Sbjct: 3 MATLYKKAGLLVTIPLIK---GPKGFGFAIADSPTGQKVKMILDSQWC--QGLQKGDIIK 57
Query: 568 AIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
I ++V+ H +VV+++K + L+
Sbjct: 58 EIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 59.4 bits (144), Expect = 5e-11
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 511 SAKHHWTAPRSIQLQRANNSDTGFGFSVRG---------DAPVIVASV-DSGSLAQFGGM 560
+ I L R + G GF++ G D+ + V+ + ++G+ A G +
Sbjct: 10 GRVDYLVTEEEINLTRGPS---GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRL 66
Query: 561 KDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
++GD I+++ +D+K H++ V L ++AG +SL++
Sbjct: 67 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 59.4 bits (144), Expect = 5e-11
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRD 573
P + LQ+ ++ G S+ G + + V + A G + GD I + R
Sbjct: 20 PGKVTLQK--DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS 77
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKL 597
+K EV ++I++ +++
Sbjct: 78 IKGKTKVEVAKMIQEVKGEVTIHY 101
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 58.6 bits (142), Expect = 5e-11
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWS 577
P + L + S + +R + + V + SLA + G +++GD ++ I +
Sbjct: 3 PTKVTLVK---SAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59
Query: 578 PHEEVVQLIKDAGKCLSLKL 597
+ LI+ + L + +
Sbjct: 60 SLTDAKTLIERSKGKLKMVV 79
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 58.1 bits (141), Expect = 6e-11
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 521 SIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPH 579
+ L + S + +R + + V + LA + G + +GD I+ I +
Sbjct: 3 GVLLMK---SRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSL 59
Query: 580 EEVVQLIKDAGKCLSLKLVTPMHKNNNVHH 609
+ +LI+ + L L +V ++++ HH
Sbjct: 60 TDARKLIEKSRGKLQL-VVLRDLEHHHHHH 88
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 59.3 bits (144), Expect = 6e-11
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIG 570
R++++++ G S+ G D P+ +A + +A Q ++ GD IV I
Sbjct: 25 LRTVEMKKGPTD--SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTIC 82
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ H + V L+K+A + +++V
Sbjct: 83 GTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 59.0 bits (143), Expect = 6e-11
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 531 DTGFGFSVRG-----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQ 584
G GFS+ G + + V V LA Q G ++ G+ +++I + +K + H + +
Sbjct: 26 GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALA 85
Query: 585 LIKDAGKCLSLKLVTPMHKNNNVHHSHNS 613
+++ A + +VT + ++S
Sbjct: 86 ILRQAREPRQAVIVTRKLTPEAMPDLNSS 114
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 58.1 bits (141), Expect = 8e-11
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLA-QFGGMKDGD 564
+ I L R + G GF++ G D+ + V+ + A G +++GD
Sbjct: 4 YLVTEEEINLTRGPS---GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGD 60
Query: 565 FIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
I+++ +D+K H++ V L ++AG +SL++
Sbjct: 61 KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 57.6 bits (140), Expect = 9e-11
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVK 575
+I LQ+ G G S+ G D V V+ + G +A G + GD I+ + DV+
Sbjct: 6 LTIGLQK--KPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Query: 576 WSPHEEVVQLIKDAGKCLSLKL 597
+ E V L+K + ++L++
Sbjct: 64 NATQEAVAALLKCSLGTVTLEV 85
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 58.1 bits (141), Expect = 1e-10
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 514 HHWTAPRSIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLA-QFGGMKD 562
+ L R+ G GFS+ G DA + V+ + G A + G ++
Sbjct: 3 SGSSGRHVACLARSER---GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59
Query: 563 GDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
GD +++I DV + H+ V L+ A ++L L
Sbjct: 60 GDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 57.7 bits (140), Expect = 1e-10
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVK 575
+ L + +S G + + V + + G LA Q G + D ++AI D+K
Sbjct: 5 LQVALHK-RDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63
Query: 576 WSPHEEVVQLIKDAGKCLSLKL 597
+ E Q+I+ +G+ ++L +
Sbjct: 64 YGTPELAAQIIQASGERVNLTI 85
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 57.7 bits (140), Expect = 1e-10
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 520 RSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQF-GGMKDGDFIVAI 569
I+L + G GFS+ G D + V + G A G ++ GD ++A+
Sbjct: 5 MEIKLIKGPK---GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKLV--TPMHKNNNVHHSH 611
++ HEE V +K+ + LK+ T M+ + + HH H
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISRHHHHHH 105
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 58.2 bits (141), Expect = 1e-10
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-------------DAPVIVASVDSGSLA-QFGGMKDGD 564
PR ++L R + G S+ G + + V S A + G +K GD
Sbjct: 25 PRRVELWREPS--KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 82
Query: 565 FIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
IV + D++ + HE+ V+ I+ AG + +
Sbjct: 83 RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 57.9 bits (140), Expect = 2e-10
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDV 574
+L++ S GFGF+V G D + + S+ A G M+ GD IV++ D V
Sbjct: 20 IHTKLRK---SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 76
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLV 598
H +VV++ + S+ L
Sbjct: 77 LGHTHAQVVKIFQSIPIGASVDLE 100
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 57.4 bits (139), Expect = 2e-10
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDR 572
I++ + + G G S+ G +++ V A + G + GD I+ +
Sbjct: 18 EMIIEISKGRS---GLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKL 597
D++ S HEE + ++ + + L +
Sbjct: 75 DLRNSSHEEAITALRQTPQKVRLVV 99
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 56.8 bits (138), Expect = 2e-10
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571
++L + +D G SV G + V +V A+ G + GD ++A+
Sbjct: 7 FEVELAK---NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKL 597
++ + H++ V+ +++ G+ + L L
Sbjct: 64 VSLEGATHKQAVETLRNTGQVVHLLL 89
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 57.0 bits (138), Expect = 2e-10
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG------------DAPVIVASVDSGSLA-QFGGMKDGDF 565
++ L R + GF++ G + V+ + A + GG++ D
Sbjct: 9 SLTLVLHRDSG---SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDR 65
Query: 566 IVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
I+ + RD+ + H++ V+ K A + + ++++
Sbjct: 66 IIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 56.5 bits (137), Expect = 2e-10
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 522 IQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKW 576
+L++ S GFGF+V G D + + S+ A G M+ GD IV++ D V
Sbjct: 4 TKLRK---SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLG 60
Query: 577 SPHEEVVQLIKDAGKCLSLKLV 598
H +VV++ + S+ L
Sbjct: 61 HTHAQVVKIFQSIPIGASVDLE 82
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 57.5 bits (139), Expect = 2e-10
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-----DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRD 573
I+L++ G G S+ G + V ++ A G M+ GD ++ I ++
Sbjct: 27 HIIELEK---DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQI 83
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVH 608
+ H+ +IK A + L + N +
Sbjct: 84 LYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMA 118
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 57.9 bits (140), Expect = 3e-10
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 514 HHWTAPRSIQLQR-ANNSDTGFGFSV-------RGDAPVIVASVDSGSLA-QFGGMKDGD 564
+ ++ +S G V G + V GSLA G ++ GD
Sbjct: 29 GRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGD 88
Query: 565 FIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
++ R ++ + EEV +I ++ ++LV
Sbjct: 89 EVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 56.5 bits (137), Expect = 3e-10
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDR 572
+I++ + TG G S+ G +I+ V A + G + GD I+ +
Sbjct: 5 ETTIEISK---GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGI 61
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKL 597
D++ + H+E + +++ + + L L
Sbjct: 62 DLRKATHDEAINVLRQTPQRVRLTL 86
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 60.5 bits (146), Expect = 3e-10
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRD 573
R + +++ G G S++G P++++ + G A Q + GD I+++ D
Sbjct: 78 RRRVTVRK--ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 135
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQSP 633
+ + H+E VQ +K GK + L++ + +S G +S S + SP
Sbjct: 136 LSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSP 195
Query: 634 SSSITPSRK 642
+
Sbjct: 196 GPQPRNLSE 204
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 56.5 bits (137), Expect = 3e-10
Identities = 16/89 (17%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 521 SIQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571
++L + G G ++ G + + V S+ S + G ++ GD I+A+
Sbjct: 7 DVELTKNVQ---GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+++ +++ V++++ G+ + L L+
Sbjct: 64 TNLQGFTNQQAVEVLRHTGQTVLLTLMRR 92
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 56.7 bits (137), Expect = 3e-10
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 520 RSIQLQRANNSDTGFGFSVRG------DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRD 573
++++++ G ++ G P IV GS G +K G I+ +
Sbjct: 8 TLVRVKKSAA---TLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLVT 599
++ H E ++I +A K +
Sbjct: 65 LRGKEHREAARIIAEAFKTKDRDYID 90
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 56.3 bits (136), Expect = 4e-10
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSVRG------------DAPVIVASVDSGSLAQFGGMKD 562
H A + I+++ D GFS+ G D + V V A ++
Sbjct: 6 HELAKQEIRVRV--EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQP 62
Query: 563 GDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPM 601
GD I+ H + V L+K + L +V +
Sbjct: 63 GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 56.7 bits (137), Expect = 5e-10
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 520 RSIQLQRANNSDTGFGFSVRG----DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDV 574
S L++ S+ GFGF++ G D + V SV A G M+ GD IV I + V
Sbjct: 21 LSTTLKK---SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCV 77
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLV 598
H +VV+L + S+ LV
Sbjct: 78 LGHTHADVVKLFQSVPIGQSVNLV 101
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 55.8 bits (135), Expect = 5e-10
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 522 IQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571
I L+R N+ G GFS+ G D + + + G A G + D ++ + +
Sbjct: 8 IVLERGNS---GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKL 597
DV H V+ +K+AG + L +
Sbjct: 65 VDVSEVVHSRAVEALKEAGPVVRLVV 90
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.2 bits (136), Expect = 7e-10
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIG 570
+SI L+R G GFS+ G D P+ V +V + A G +K GD I+A+
Sbjct: 26 CKSITLER---GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN 82
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ ++ HEE V ++K ++L +++
Sbjct: 83 GQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 7e-10
Identities = 95/614 (15%), Positives = 184/614 (29%), Gaps = 163/614 (26%)
Query: 22 HNQRNVAQLQATTNRKLKETVALELSFV-NSNLQLLKEQLAELNSSVELYQNDK--RSLD 78
H + Q + + E +FV N + + +++ + S E+ D S D
Sbjct: 6 HMDFETGEHQ-YQYKDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKD 59
Query: 79 SVESVYRLFSLMIL--------FM-----------------------------LSTRDR- 100
+V RLF ++ F+ + RDR
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 101 -KTPRSF-KYF-SKEPVMPMIPLGLKETKEID---------------VREPFKDFILEHY 142
+ F KY S+ + L E + + + ++
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 143 SEDG-----TAYEDSVSEFMDMRQAMRTPNRDNSGISLLFQYYNQLYFIE------RRFF 191
+ +S ++M Q + D + S N I RR
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 192 ---PPDRSLGIYFEYDSLTGVPSCQRTI--AFEKAC-VLFNMAAIYTQMAAKQDRLTSTG 245
P + L + L V AF +C +L + T+ D L++
Sbjct: 239 KSKPYENCLLV------LLNV--QNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAAT 285
Query: 246 LDQAVDNFLRAAGTFTY-----LQENFTNAPSMDLGPPMLD---MLIQLMLAQARE--CL 295
+ T T L + + DL +L + ++ R+
Sbjct: 286 TTHISLDHHS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 296 FQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLLSLITVPE-VKDYVP---LS--WVSL 349
+ + +K ++E + + AE L P +P LS W +
Sbjct: 344 WDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDV 399
Query: 350 IQVKKEHYLALSHYYCASGLLTKSLANLSSTAQTVLSYLHIPQENKKNL---ILE----- 401
I+ + H Y L+ K + + ++ L + EN+ L I++
Sbjct: 400 IKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 402 --FEPEDESQRKQ-------LGVAHLRSALLFHEES--QRIYRMCRELRNK-----QALF 445
F+ +D +G HL++ + + ++ R L K A
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 446 QVLVQAHTLT-LEMYAD--VEEEDEFNTMYEA-----PNITPS---TKF----QLTLTPP 490
+TL L+ Y + + ++ + A P I + +K+ ++ L
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 491 DFAHLPVEDLFKQL 504
D A E+ KQ+
Sbjct: 576 DEAI--FEEAHKQV 587
Score = 51.4 bits (122), Expect = 8e-07
Identities = 99/603 (16%), Positives = 184/603 (30%), Gaps = 163/603 (27%)
Query: 124 ETKEIDVREPFKDFILEHYSEDGTAY---------EDSVSEFMD---------MRQAMRT 165
K I +E I+ + GT E+ V +F++ + ++T
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 166 PNRDNSGISLLFQYY-NQLYFIERRFFPPDRSLGIYFEYDSL-TGVPSCQRTIAFEKACV 223
R S ++ ++ ++LY + F ++ Y L + + K +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQPYLKLRQALLELRP----AKNVL 154
Query: 224 LFNMAAI-YTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQENFTNAPSMDLGPPMLDM 282
+ + T +A D S + +D F +L N N S + +L+M
Sbjct: 155 IDGVLGSGKTWVAL--DVCLSYKVQCKMDF-----KIF-WL--NLKNCNSPET---VLEM 201
Query: 283 LIQLMLAQARECLFQKLQLQTTEKCDFQHMLELAQEAAQVAEVYMSLL-------SLITV 335
L + L ++ T + D H + + LL L+ +
Sbjct: 202 L---------QKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 336 PEVKDYVPLSWVSLIQVKKEHYLALSHYYCASGLLT---KSLANLSSTAQTVLSYLHIPQ 392
V++ + LS C LLT K + + S A T HI
Sbjct: 251 LNVQN----AKA----WN---AFNLS---CKI-LLTTRFKQVTDFLSAATTT----HISL 291
Query: 393 ENKKNLILEFEPEDESQRKQLGVAHLRSALLFHEESQR-------IYRMCRELRNK-QAL 444
++ + DE + L R L E I R+
Sbjct: 292 DHHS---MTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 445 FQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLFKQL 504
V T +E +V E E+ M++ +L++ PP AH+P L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFD----------RLSVFPPS-AHIPTILL---- 392
Query: 505 GPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDG- 563
++ W ++ D V+V + SL + K
Sbjct: 393 ---SLI-----WFD------------------VIKSDVMVVVNKLHKYSLVE----KQPK 422
Query: 564 DFIVAIGDRDVKWSPH-EEVVQL---IKDA---GKCLSLKLVTPMHKNNNVHHS---HNS 613
+ ++I ++ E L I D K + P + + + H
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 614 RIKGTESIK------------ESK--TSEKNQSPSSSITPSRKQIWNPFKKHQRDHELCY 659
I+ E + E K + S SI + +Q+ +K + D++ Y
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKY 541
Query: 660 NHM 662
+
Sbjct: 542 ERL 544
Score = 49.1 bits (116), Expect = 4e-06
Identities = 51/339 (15%), Positives = 95/339 (28%), Gaps = 90/339 (26%)
Query: 33 TTNRK-----LKETVALELSFVNSNLQLLKEQLAELNSSVELYQNDKRSLDSVESVYRLF 87
TT K L +S + ++ L +++ L L D R D V
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-L---DCRPQDLPREVLTTN 326
Query: 88 SLMI-LFMLSTRDRK-TPRSFKYFSKEPVMPMIPLGLKETKEIDVREPFKDF-------- 137
+ + S RD T ++K+ + + + +I L + + R+ F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 138 ----ILEHYSEDGTAY--EDSVSEFMDMRQAMRTPNRDNSGI-SLLFQYYNQL------- 183
+L D V++ + P I S+ + +L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 184 ------YFIERRFFPPDRSL----GIYFEYDS--LTGVPSCQRTIAFEKACVLFNMAAI- 230
Y I + F D ++ + L + +R F V + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLE 504
Query: 231 -------------------------YTQMAAKQDRLTSTGLDQAVDNFLRAAGTFTYLQE 265
Y D L A+ +FL E
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIE------E 557
Query: 266 NFTNAPSMDLGPPMLDMLIQLMLAQARECLFQKL--QLQ 302
N + D L+++ L E +F++ Q+Q
Sbjct: 558 NLICSKYTD--------LLRIALMAEDEAIFEEAHKQVQ 588
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 55.9 bits (135), Expect = 9e-10
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQF-GGMKDGDFIVA 568
+++L R + G + G + + V SV GS A G ++ D IVA
Sbjct: 16 TYNVELVRKDGQ--SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVA 73
Query: 569 IGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+ +++ + +VV+++++AG+ + L LV
Sbjct: 74 VDGVNIQGFANHDVVEVLRNAGQVVHLTLVRR 105
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 55.0 bits (133), Expect = 1e-09
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 522 IQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571
+ L + G GFS+ G D + + + G AQ G ++ GD ++A+ +
Sbjct: 7 VNLLKGPK---GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 63
Query: 572 RDVKWSPHEEVVQLIKDAGKCLSLKLVTP 600
+++ HEE V +K+ + LK+ P
Sbjct: 64 TNLQDVRHEEAVASLKNTSDMVYLKVAKP 92
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 55.5 bits (134), Expect = 1e-09
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIG 570
+ + +Q+ G +V G D P+ V SV+ G + + G +K GD ++ +
Sbjct: 25 EKVVNIQKDPGE--SLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVD 82
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
++ E V L+K + LK +
Sbjct: 83 GVELTEVSRSEAVALLKRTSSSIVLKAL 110
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 55.0 bits (133), Expect = 1e-09
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 521 SIQLQRANNSDTGFGFSV-------RGDAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDR 572
+IQL++ G GFS+ G AP+ V ++ A G +K GD ++ +
Sbjct: 14 NIQLKK---GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKLV 598
D+ EEVV L++ ++ L+
Sbjct: 71 DLAGKSQEEVVSLLRSTKMEGTVSLL 96
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 53.8 bits (130), Expect = 2e-09
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 521 SIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPH 579
+ L ++ ++ +G + + V + SLA + G +++GD ++ I +
Sbjct: 3 KVTLVKSRKNE-EYGLRLAS--HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSL 59
Query: 580 EEVVQLIKDAGKCLSLKL 597
+ LI+ + L + +
Sbjct: 60 TDAKTLIERSKGKLKMVV 77
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-------------DAPVIVASVDSGSLA-QFGGMKDGDF 565
R + +Q+A G S+RG D + ++ V A + G ++ G
Sbjct: 11 RELCIQKAPGE--RLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 566 IVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
++ + + + H E VQL++ G L++ +
Sbjct: 69 LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 53.9 bits (130), Expect = 2e-09
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 522 IQLQRANNSDTGFGFSVRG------------DAPVIVASVDSGSLAQFGGMKDGDFIVAI 569
+++++ D GFS+ G D + V V A ++ GD I+
Sbjct: 7 VRVEK----DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQA 61
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPM 601
H + V L+K + L +V +
Sbjct: 62 NGYSFINIEHGQAVSLLKTFQNTVELIIVREV 93
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 53.9 bits (130), Expect = 3e-09
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 521 SIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQF-GGMKDGDFIVAI 569
++L++ + G G S+ G + V +V G AQ G ++ D IV +
Sbjct: 12 PVELEKDED---GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ ++++ + +
Sbjct: 69 DGISLVGVTQNFAATVLRNTKGNVRFVI 96
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 53.9 bits (130), Expect = 4e-09
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 515 HWTAPRSIQLQRANNSDTGFGFSV-------RGDAPVIVASVDSGSLA-QFGGMKDGDFI 566
+IQL++ G GFS+ G AP+ V ++ A Q G +K GD +
Sbjct: 27 KIGKRLNIQLKK---GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRL 83
Query: 567 VAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+ + D+ EEVV L++ ++ L+
Sbjct: 84 IEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.9 bits (130), Expect = 4e-09
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 521 SIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIG 570
I+L + G GFS+ G D + V + G AQ G ++ GD ++ +
Sbjct: 27 EIKLFKGPK---GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVN 83
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLKLV--TPMH 602
+ ++ HEE V ++K+ + + LK+ T ++
Sbjct: 84 NYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 58.4 bits (140), Expect = 5e-09
Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 519 PRSIQLQRANNSDTGFGFSVRGD---APVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
PR I + R TG GF++ G + ++ + +G A G ++ GD I+++ D+
Sbjct: 308 PRRIVIHR---GSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
Query: 575 KWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQSPS 634
+ + HE+ +K+AG+ ++ ++ + + S S S
Sbjct: 365 RNASHEQAAIALKNAGQ--TVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRS 422
Query: 635 SSITPSRKQIWNPFKKHQRDHELC 658
+ + + K + L
Sbjct: 423 NPKRGFYIRALFDYDKTKDCGFLS 446
Score = 56.1 bits (134), Expect = 2e-08
Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 16/175 (9%)
Query: 478 TPSTKFQLTLTPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFS 537
TP K P PV L + I L+R N+ G GFS
Sbjct: 19 TPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNS---GLGFS 75
Query: 538 VRG---------DAPVIVASVDSGSLAQFGG-MKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
+ G D + + + G A G ++ D I+ + + DV+ H V+ +K
Sbjct: 76 IAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 135
Query: 588 DAGKCLSLKLV---TPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQSPSSSITP 639
+AG + L ++ P K + + G S +T
Sbjct: 136 EAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTK 190
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 53.7 bits (129), Expect = 7e-09
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG-------DAPVIVASV-DSGSLAQFGGMKDGDFIVAIG 570
++ L++ G GFS+ G D P+ + + + Q ++ GD I+ +G
Sbjct: 30 VCTVTLEK---MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86
Query: 571 DRDVKWSPHEEVVQLIKDAGK 591
++ E +IK
Sbjct: 87 GTAMQGLTRFEAWNIIKALPD 107
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 52.7 bits (127), Expect = 8e-09
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 516 WTAPRSIQLQRANNSDTGFGFSV-------RGDAPVIVASVDSGSLA-QFGGMKDGDFIV 567
P I + G G S+ + + V SV G A G + GD ++
Sbjct: 7 HKEPEIITVTL--KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 568 AIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
++ R + E +L+ ++L++
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 52.0 bits (125), Expect = 1e-08
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 519 PRSIQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLAQF-GGMKDGDFIVAI 569
+ ++L + G GFS+ + +++ S+ + +A+ GG+ GD +V++
Sbjct: 16 VKIVELVK---DCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 570 GDRDVKWSPHEEVVQLIKDAGK 591
+ + + E V+++K
Sbjct: 73 NEYCLDNTSLAEAVEILKAVPP 94
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 520 RSIQLQRANNSDTGFGFSVRG------------DAPVIVASVDSGSLAQF-GGMKDGDFI 566
++L + +N G SV + V +V A+ G + GD +
Sbjct: 11 FEVELAKNDN---SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 567 VAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+A+ ++ + H++ V+ +++ G+ + L L
Sbjct: 68 LAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 56.1 bits (134), Expect = 2e-08
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 494 HLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGS 553
+ + K L P + L + + GFSV+ I+ S+ G
Sbjct: 270 LATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQN---GIICSLMRGG 326
Query: 554 LAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLV 598
+A+ GG++ G I+ I + V + HE++VQ + ++ + +K +
Sbjct: 327 IAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTM 371
Score = 51.9 bits (123), Expect = 4e-07
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 7/141 (4%)
Query: 465 EDEFNTMYEAPNITPSTKFQLTLTPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQL 524
+ ++ +A ++ + P+ + H + +L
Sbjct: 149 QLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKEL 208
Query: 525 QRANNSDTGFGFSVRG------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWS 577
Q + G V VI+A++ +G A + G + GD I++I +
Sbjct: 209 QLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGL 268
Query: 578 PHEEVVQLIKDAGKCLSLKLV 598
P +IK +KL
Sbjct: 269 PLATCQGIIKGLKNQTQVKLN 289
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 51.2 bits (123), Expect = 2e-08
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 521 SIQLQRANNSDTGFGFSVRG---------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIG 570
S++L R ++ + G S+ G + V S+ GS A G ++ D I+ +
Sbjct: 15 SVELFREKDT-SSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD 73
Query: 571 DRDVKWSPHEEVVQLIKDAGKCLSLKL 597
D +V+ +VV+++++AG + L L
Sbjct: 74 DVNVQGMAQSDVVEVLRNAGNPVRLLL 100
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 51.6 bits (124), Expect = 3e-08
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 521 SIQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQF-GGMKDGDFIVAI 569
++L++ + G G S+ G + V +V G A G ++ D +V +
Sbjct: 7 PVELEKDSE---GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 570 GDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ ++++ + +
Sbjct: 64 DGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 51.7 bits (124), Expect = 3e-08
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGD 571
I ++R + G GFSV + V V GS+A + +K+ D I+AI
Sbjct: 27 EYIDIERPSTG--GLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINH 84
Query: 572 RDVKWS-PHEEVVQLIKDAGKCLSLKLV 598
+ + H++ + L++ L L +
Sbjct: 85 TPLDQNISHQQAIALLQQTTGSLRLIVA 112
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 50.8 bits (122), Expect = 5e-08
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 520 RSIQLQRANNSDTGFGFSVRG-------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGD 571
+L + + G GFSV G + + V + GS+A G +K+ D I+AI
Sbjct: 22 EVFELLKPPSG--GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 572 RDVKWS-PHEEVVQLIKDAGKCLSLKL 597
+ + + H++ + +++ A + L +
Sbjct: 80 QALDQTITHQQAISILQKAKDTVQLVI 106
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 50.5 bits (121), Expect = 5e-08
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 522 IQLQRANNSDTGFGFSV------RGDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDV 574
+ L + G S+ RGD + + S+ G G ++ GD ++ + D +
Sbjct: 9 VTLNMEKYN--FLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNF 66
Query: 575 KWSPHEEVVQLIKDAGK 591
+ +++ V++++D
Sbjct: 67 ENMSNDDAVRVLRDIVH 83
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 50.5 bits (121), Expect = 7e-08
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 531 DTGFGFSVRG-----DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQ 584
+ ++ G V+V++V G A + GG+ GD I+AI + V E
Sbjct: 27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEA 86
Query: 585 LIKDA 589
++ A
Sbjct: 87 ALQKA 91
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 50.7 bits (121), Expect = 2e-07
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 23/159 (14%)
Query: 459 YADVEEEDEFNTMYEAPNITPSTKFQLTLTPPD-FAHLPVEDLFKQLGPVAIFSAKHHWT 517
Y E + E + PS K + P F+ ED ++ V +A +
Sbjct: 12 YEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYE 71
Query: 518 APRS--------IQLQRANNSDTGFGFSVRG----------DAPVIVASVDSGSLAQF-G 558
+ ++L++ + G G S+ G + V +V G A G
Sbjct: 72 LEKRVERLELFPVELEKDSE---GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDG 128
Query: 559 GMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
++ D +V + + ++++ + +
Sbjct: 129 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil,
signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP:
a.2.6.1
Length = 86
Score = 48.1 bits (114), Expect = 2e-07
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 30 LQATTNR-KLKETVALELSFVNSNLQLLKEQLAELNSSV 67
+ATT+ + V L L + L LL +QL EL++ V
Sbjct: 48 RRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAHV 86
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 48.6 bits (116), Expect = 2e-07
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 531 DTGFGFSVRG------DAPVIVASVDSGSLAQF-GGMKDGDFIVAIGDRDVKWSPHEEVV 583
+TG G + G V + V G G +K GD +V+I + EE
Sbjct: 24 ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAK 83
Query: 584 QLIKDAG 590
+I A
Sbjct: 84 SIITRAK 90
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 50.6 bits (120), Expect = 1e-06
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 518 APRSIQLQRANNSDTGFGFSVRG--DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
+ + ++ ++ G + G D + VA V S A G+++GD I+ + + D
Sbjct: 9 SMKLVKFRKG----DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 64
Query: 576 WSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVH 608
EE V + D K + ++ K+
Sbjct: 65 NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR 97
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 46.7 bits (111), Expect = 2e-06
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 522 IQLQRANNSDTGFGFSVRG--------DAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDR 572
I L + ++ G G S++G D + + S+ G A + G ++ D ++A+
Sbjct: 29 IPLNDSGSA--GLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE 86
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLK 596
+ + E ++ ++ +
Sbjct: 87 TLLGKSNHEAMETLRRSMSMEGNI 110
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 49.1 bits (116), Expect = 3e-06
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 520 RSIQLQRANNSDTGFGFSVRG--DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWS 577
+ ++ ++ G + G D + VA V S A G+++GD I+ + + D
Sbjct: 3 KLVKFRKG----DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 58
Query: 578 PHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHN 612
EE V + D K + ++ K+ +
Sbjct: 59 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVES 93
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 43.8 bits (104), Expect = 1e-05
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
+QL+ + D G V++ V GS A G++ GD I+AIG++ V+ +
Sbjct: 21 AELQLREPSFPDVQHG--------VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA-- 70
Query: 580 EEVVQLIKDAGKCLSLKLV 598
E+V + ++ L++++
Sbjct: 71 EDVYEAVR-TQSQLAVQIR 88
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 44.2 bits (103), Expect = 3e-05
Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 15/127 (11%)
Query: 533 GFGFSVRG------------DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHE 580
GFS+ G D + V V A ++ GD I+ H
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEHG 61
Query: 581 EVVQLIKDAGKCLSLKLVTPMHKNNNVHHSHNSRIKGTESIKESKTSEKNQSPSSSITPS 640
+ V L+K + L +V + G S + ++ S
Sbjct: 62 QAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATP--TS 119
Query: 641 RKQIWNP 647
W+
Sbjct: 120 LLISWDA 126
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 41.0 bits (95), Expect = 1e-04
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 520 RSIQLQRANNSDTGFGFSVRGD-----APVIVASVDSGSLA--QFGGMKDGDFIVAIGDR 572
I + GF +V V V V+ ++ + GD I+ I
Sbjct: 17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76
Query: 573 DVKWSPHEEVVQLIKDAGKCLSLKL 597
V+ EEV IK + L L +
Sbjct: 77 PVRTLRVEEVEDAIKQTSQTLQLLI 101
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
+QL+ + D G V++ V GS A G++ GD I+AIG++ V+ +
Sbjct: 242 AELQLREPSFPDVQHG--------VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA-- 291
Query: 580 EEVVQLIKDAGKCLSLKLV 598
E+V + ++ L++++
Sbjct: 292 EDVYEAVR-TQSQLAVQIR 309
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 43.5 bits (103), Expect = 2e-04
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
V+V +V +G+ A G+K GD I+ + VK + E+ +++ L+L +
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK-NI-AELRKVLDSKPSVLALNI 436
Score = 35.4 bits (82), Expect = 0.052
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
V+ V S A G+K GD I ++ + +
Sbjct: 288 AFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 43.5 bits (103), Expect = 2e-04
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
V V S G++ GD I++ + V + + + ++ K L +++
Sbjct: 388 VQVVGASENSAGWRAGIRPGDIIISANKKPVT-DV-KSLQTIAQEKKKELLVQV 439
Score = 35.8 bits (83), Expect = 0.046
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
+V+ V+ S A+ G+K GD I I D +
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 520 RSIQLQRANNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPH 579
++ + + G + V V S +Q GG++DGD IV + R +
Sbjct: 21 DELKASNPDFPEVSSG--------IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV-DSS 71
Query: 580 EEVVQLIKDAGKCLSLKLV 598
E +Q L L++
Sbjct: 72 E--LQEAVLTESPLLLEVR 88
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 38.8 bits (90), Expect = 4e-04
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 12/102 (11%)
Query: 542 APVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKLVTPM 601
PV+ + + S+A + G + A+ + + + K + ++ V P
Sbjct: 3 RPVV-GEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTIT-VAPF 60
Query: 602 HKNNNVHHSHNSRIKGTESIKESKTSEKNQSPSSS--ITPSR 641
+ ++ + P SS I P
Sbjct: 61 GSDQRRDV--------KLDLRHWAFEPDKEDPVSSLGIRPRG 94
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 41.9 bits (99), Expect = 5e-04
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
+ + V GS A G++ D I+ + V S E+ +++ ++L++
Sbjct: 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN-SI-AEMRKVLAAKPAIIALQI 416
Score = 35.7 bits (83), Expect = 0.043
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
V+ V GS + G+K GD I ++ + +
Sbjct: 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN 296
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 37.9 bits (88), Expect = 0.001
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 543 PVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK-W---------SPHEEVVQLIKDAGKC 592
++ +V S A G++ GD IV + + + W +P + I+ G
Sbjct: 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSP 64
Query: 593 LSLKLVTP 600
LSL + P
Sbjct: 65 LSLT-LIP 71
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 528 NNSDTGFGFSVRGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
+ F + G + V + A+ GG+K+ D I++I + V + +V +IK
Sbjct: 243 KDRHRDFPDVISG---AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIK 297
Query: 588 DAGKCLSLKLV 598
L++ +
Sbjct: 298 R-ESTLNMVVR 307
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 37.6 bits (88), Expect = 0.003
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
VIV SV S A G ++ D I + D+++
Sbjct: 59 VIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA 89
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 38.8 bits (91), Expect = 0.004
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
+ V +G A G+ G + + DR +
Sbjct: 244 AKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN 275
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.008
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 57 KEQLAELNSSVELYQND 73
K+ L +L +S++LY +D
Sbjct: 19 KQALKKLQASLKLYADD 35
Score = 30.7 bits (68), Expect = 0.89
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 25/55 (45%)
Query: 73 DKRSLDSVESVYRLFSLMILFMLSTRDRKTPRSFKYFSKEPVMPMIPLGLKETKE 127
+K++L +++ +L++ S P L +K T E
Sbjct: 18 EKQALKKLQASLKLYA--------------DDS------APA-----LAIKATME 47
Score = 29.1 bits (64), Expect = 2.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 19/47 (40%)
Query: 441 KQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNITPSTKFQLTL 487
KQAL ++ QA +L++YA + P+ + T+
Sbjct: 19 KQALKKL--QA---SLKLYA--------------DDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 2.7
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 619 ESIKESKTSEKNQSPSSSITPS 640
+++K+ + S K + S+ P+
Sbjct: 20 QALKKLQASLKLYADDSA--PA 39
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 34.5 bits (80), Expect = 0.012
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI--KDAGKCLSLKLV 598
+ +SV A+ G ++ GD I++ ++ + + E+++ I K AG ++LK+
Sbjct: 3 IYASSVVENMPAK-GKIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIE 56
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 34.6 bits (80), Expect = 0.012
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLI--KDAGKCLSLKLV 598
V V SV A G ++ GD I AI + + S E++V + K AG + + +
Sbjct: 7 VYVMSVLPNMPAA-GRLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFI 60
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 36.7 bits (85), Expect = 0.020
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 530 SDTGFGFSVRG------DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVV 583
GF +++ +++ V GS A+ G++ G +I+ + + E++
Sbjct: 72 PSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELL 131
Query: 584 Q 584
Q
Sbjct: 132 Q 132
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 36.5 bits (85), Expect = 0.025
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
V+ V GS + G+K GD I ++ + +
Sbjct: 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN 296
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 36.4 bits (85), Expect = 0.025
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
++V V A G++ D I+++ ++
Sbjct: 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI 277
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 33.4 bits (77), Expect = 0.044
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
V V SV A + GD I I K
Sbjct: 9 VYVMSVKDDVPAA-DVLHAGDLITEIDGNAFK 39
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 35.4 bits (80), Expect = 0.064
Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 6/169 (3%)
Query: 419 RSALLFHEESQRIYRMCRELRNKQALFQVLVQAHTLTLEMYADVEEEDEFNTMYEAPNIT 478
+ AL+ + + + L T ++ N + + P I
Sbjct: 379 KGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKT---SIGTADDTVINWLNQYPGID 435
Query: 479 PSTKFQLTLTPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQRANNSDTGFGFSV 538
S + L + L + + ++ + N + S
Sbjct: 436 ISDFLKDALYNKESLSLVELLQNFGVMVQKQVPVDDNSVGGKASEQPARVNFGAKYKASP 495
Query: 539 RGDAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
+G + V +V A G+ GD I+AI + +++
Sbjct: 496 QG---LDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYI 541
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 33.3 bits (76), Expect = 0.071
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK 575
V + SV GS A + G I +I
Sbjct: 27 VQIDSVVPGSPAS-KVLTPGLVIESINGMPTS 57
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 31.8 bits (72), Expect = 0.17
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 544 VIVASVDSGSLAQFGGMKDGDFIVAIGDRDVK-WSPHEEVVQLIKDAGK 591
V+ L + G++DGD VA+ D+ + + Q + + +
Sbjct: 39 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTE 87
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 32.4 bits (73), Expect = 0.30
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 546 VASVDSGSLAQFGGMK-DGDFIVAIGDRDVKWSPHEEVVQLIKDAGKCLSLKL 597
V V S G++ DFIV+I + L + K + + +
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLI 72
Score = 30.4 bits (68), Expect = 1.6
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 536 FSVRGDAPVIVASVDSGSLA-QFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIKD-AGKCL 593
F + V V+S S A G D+I+ + E++ LI+ K L
Sbjct: 106 FDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNES---EDLFSLIETHEAKPL 162
Query: 594 SL 595
L
Sbjct: 163 KL 164
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 33.0 bits (76), Expect = 0.33
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 127 EIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTPNRDNSGISL--LFQYYNQLY 184
+ID R+ F +F+ + +++++ + + + I + + L
Sbjct: 1 QIDYRDVFIEFLTTFKGNNN------QNKYIERINELVAYRKKSLIIEFSDVLSFNENLA 54
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 30.2 bits (68), Expect = 0.42
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 546 VASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHE--EVVQLIKDAGK 591
V+ L + G++DGD VA+ D+ P+ + Q + + +
Sbjct: 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLT-DPNVMNTLFQSMNEMTE 69
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 32.6 bits (75), Expect = 0.42
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 541 DAPVIVASVDSGSLAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK 587
V+V + G A+ G + GD IV + VK +V L++
Sbjct: 98 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Brucella melitensis biovar abortus}
Length = 104
Score = 30.6 bits (69), Expect = 0.46
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 272 SMDLGPPMLDMLIQLMLAQ-ARECLFQKLQLQTTEKCDF--QHMLELAQEAAQVAEVYMS 328
SM L P D L+ ML+ A + + L+L E ++L+ A+E V EV
Sbjct: 4 SMHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDG 63
Query: 329 LLSLITVPEVKDYVPLSWVSLIQV 352
S++ +V D VP + LIQV
Sbjct: 64 ARSVLKADDVMDGVP-DLLPLIQV 86
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 32.5 bits (73), Expect = 0.57
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 488 TPPDFAHLPVEDLFKQLGPVAIFSAKHHWTAPRSIQLQ-RANNSDTGFGFSVRGDAPVIV 546
T D +++ VE + + + + G + V
Sbjct: 701 TRYDLSNVIVEMQGEYRTSHSYEMGGTFTDKDPFRSGRIACDFKLDGDHYVVAKAYAGDY 760
Query: 547 ASVDSGS-LAQFGGMKDGDFIVAIGDRDVKWSPHEEVVQLIK-DAGKCLSLKLVTP 600
++ S + ++G G I I V + +++ AG ++L
Sbjct: 761 SNEGEKSPIFEYGIDPTGYLIEDIDGETVG--AGSNIYRVLSEKAGTSARIRLSGK 814
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 29.9 bits (68), Expect = 2.4
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 14/51 (27%)
Query: 536 FSVRGDAPVIVASVDSGSLAQFGGMK-----------DGDFIVAIGDRDVK 575
V G V+V A G++ GD I ++ V
Sbjct: 248 LGVSG---VLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS 295
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative, northeast
structural genomics consortium; 2.30A {Nostoc SP} PDB:
2klb_A
Length = 159
Score = 27.9 bits (62), Expect = 6.2
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 574 VKWSPHEEVVQLIKDAGKCLSLKLVTPMHKNNNVHHSH 611
+K +P E +L ++AG L + +++ HH H
Sbjct: 124 IKQTPTENTYKLCEEAGTDLGQWVTRDRLEHH--HHHH 159
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 28.6 bits (65), Expect = 6.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 545 IVASVD-------SGS---LAQFGGMKDGDFIVAI 569
+V S SGS +A GMK I+A+
Sbjct: 256 VVGSCKLYVAMGISGSIQHMA---GMKHVPTIIAV 287
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 8.3
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 34/128 (26%)
Query: 70 YQNDKRSLDSVESVYRLFSLMILFMLST--RDRKTPRSFKY--FSKEP---VMPMIPLGL 122
Y ++ + +I + S + K+ + EP + +P
Sbjct: 124 YSSEVKENSVDSDDKAKVPPLIRIV-SGLELSDTKQKGKKFLVIAYEPFENIAIELP--- 179
Query: 123 KETKEIDVREPFKDFILEHYSEDGTAYEDSVSEFMDMRQAMRTP-NRDNSGISLLFQYYN 181
EI E D+ ++ +D T + + YY
Sbjct: 180 --PNEILFSEN--------------NDMDNNNDGVDELNKKCTFWDAISK------LYYV 217
Query: 182 QLYFIERR 189
Q +F +
Sbjct: 218 QFFFKQAE 225
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
catalytic DYAD, hydrolase; HET: MES; 1.90A
{Methanocaldococcus jannaschii} SCOP: d.14.1.10
Length = 187
Score = 27.9 bits (63), Expect = 8.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 368 GLLTKSLANLSSTAQTVLSYLHIPQENKKNLI----LEFEP 404
G+ K A + V+ IP+ N ++I +E P
Sbjct: 136 GVNEKIEAAKRYGFKRVI----IPEANMIDVIETEGIEIIP 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.377
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,648,878
Number of extensions: 574297
Number of successful extensions: 1581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1409
Number of HSP's successfully gapped: 226
Length of query: 665
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 565
Effective length of database: 3,909,693
Effective search space: 2208976545
Effective search space used: 2208976545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)