Query psy12112
Match_columns 246
No_of_seqs 284 out of 1518
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:04:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02354 copper ion binding / 100.0 1.9E-32 4E-37 269.5 13.8 109 112-245 26-136 (552)
2 PLN02835 oxidoreductase 100.0 3.2E-32 7E-37 267.1 14.4 109 112-245 28-138 (539)
3 PLN02168 copper ion binding / 100.0 3.3E-32 7.1E-37 267.6 14.0 109 112-245 25-135 (545)
4 PLN02991 oxidoreductase 100.0 4.4E-32 9.6E-37 266.6 13.6 109 112-245 27-137 (543)
5 PLN02792 oxidoreductase 100.0 7.6E-32 1.7E-36 264.5 14.1 95 149-245 29-125 (536)
6 PLN00044 multi-copper oxidase- 100.0 1.4E-31 3.1E-36 265.4 14.3 109 112-245 26-138 (596)
7 TIGR03389 laccase laccase, pla 100.0 1.6E-31 3.6E-36 261.3 14.1 95 149-244 16-112 (539)
8 TIGR03390 ascorbOXfungal L-asc 100.0 3.4E-31 7.5E-36 259.4 13.8 97 149-245 21-120 (538)
9 PLN02191 L-ascorbate oxidase 100.0 5E-31 1.1E-35 260.3 13.5 97 149-245 36-133 (574)
10 PF07732 Cu-oxidase_3: Multico 100.0 2.6E-31 5.7E-36 213.9 8.7 95 148-243 7-103 (117)
11 TIGR03388 ascorbase L-ascorbat 100.0 4.3E-30 9.3E-35 251.6 13.4 97 149-245 14-111 (541)
12 KOG1263|consensus 100.0 2.5E-29 5.5E-34 247.9 13.3 110 111-245 26-137 (563)
13 PLN02604 oxidoreductase 100.0 2.7E-29 5.9E-34 247.4 13.4 112 111-245 22-134 (566)
14 TIGR01480 copper_res_A copper- 99.9 5.1E-27 1.1E-31 232.7 13.1 94 149-245 58-152 (587)
15 PRK10965 multicopper oxidase; 99.9 2.3E-24 5.1E-29 211.1 12.6 84 150-239 60-145 (523)
16 PRK10883 FtsI repressor; Provi 99.9 6.7E-23 1.4E-27 198.5 12.2 87 149-241 59-147 (471)
17 TIGR02376 Cu_nitrite_red nitri 99.9 1.7E-21 3.7E-26 179.7 13.5 101 111-240 25-127 (311)
18 COG2132 SufI Putative multicop 99.8 5.6E-19 1.2E-23 169.0 10.4 95 148-245 45-140 (451)
19 TIGR01480 copper_res_A copper- 99.7 1.8E-16 3.9E-21 157.8 9.6 94 148-243 478-576 (587)
20 TIGR03095 rusti_cyanin rusticy 99.6 5.1E-16 1.1E-20 130.3 9.3 94 150-244 36-138 (148)
21 TIGR03096 nitroso_cyanin nitro 99.1 8.3E-10 1.8E-14 92.2 10.6 76 150-241 43-122 (135)
22 PF07731 Cu-oxidase_2: Multico 98.8 3.6E-09 7.8E-14 84.9 5.1 75 165-240 32-121 (138)
23 COG2132 SufI Putative multicop 98.2 2E-06 4.4E-11 82.8 6.6 86 154-241 341-436 (451)
24 PRK10965 multicopper oxidase; 98.0 8.6E-06 1.9E-10 80.8 6.2 83 158-242 414-511 (523)
25 PLN02835 oxidoreductase 98.0 7.5E-06 1.6E-10 81.4 5.6 71 169-240 413-498 (539)
26 TIGR03388 ascorbase L-ascorbat 97.9 1.7E-05 3.8E-10 78.6 6.1 74 169-242 418-512 (541)
27 TIGR02376 Cu_nitrite_red nitri 97.9 2.5E-05 5.5E-10 72.6 6.8 84 156-240 189-281 (311)
28 TIGR03389 laccase laccase, pla 97.9 2.6E-05 5.5E-10 77.3 6.4 76 168-243 416-509 (539)
29 PLN02604 oxidoreductase 97.8 2.8E-05 6.1E-10 77.6 5.9 74 169-242 441-535 (566)
30 PLN02168 copper ion binding / 97.7 8.1E-05 1.8E-09 74.4 6.8 72 167-239 415-501 (545)
31 PRK02888 nitrous-oxide reducta 97.7 0.00018 3.8E-09 73.2 9.1 82 147-239 533-617 (635)
32 PF13473 Cupredoxin_1: Cupredo 97.7 7.8E-05 1.7E-09 58.1 4.9 74 155-242 23-97 (104)
33 PLN02354 copper ion binding / 97.6 8.9E-05 1.9E-09 74.1 5.5 72 168-240 419-505 (552)
34 TIGR03390 ascorbOXfungal L-asc 97.5 0.00014 2.9E-09 72.4 6.2 75 168-242 413-520 (538)
35 PLN02191 L-ascorbate oxidase 97.5 0.00018 3.9E-09 72.2 6.5 74 169-242 441-535 (574)
36 PLN02792 oxidoreductase 97.5 0.00018 3.8E-09 71.8 6.3 74 168-242 404-492 (536)
37 PLN02991 oxidoreductase 97.5 0.00018 3.9E-09 71.9 6.0 72 168-240 411-497 (543)
38 PF00394 Cu-oxidase: Multicopp 97.4 0.00045 9.9E-09 57.6 6.3 83 155-238 36-136 (159)
39 PRK10883 FtsI repressor; Provi 97.4 0.0003 6.5E-09 68.9 5.8 78 158-241 363-455 (471)
40 TIGR02656 cyanin_plasto plasto 97.2 0.0015 3.3E-08 50.8 7.5 71 164-239 14-86 (99)
41 TIGR02657 amicyanin amicyanin. 97.2 0.0013 2.9E-08 49.6 6.8 66 164-240 8-73 (83)
42 PLN00044 multi-copper oxidase- 97.2 0.00059 1.3E-08 69.0 5.6 71 167-238 433-518 (596)
43 PF00127 Copper-bind: Copper b 96.8 0.0021 4.4E-08 49.9 4.7 71 164-238 14-85 (99)
44 KOG1263|consensus 96.5 0.0051 1.1E-07 62.1 5.9 73 168-240 431-522 (563)
45 PRK02710 plastocyanin; Provisi 96.3 0.022 4.7E-07 45.9 7.7 64 164-240 44-107 (119)
46 TIGR03102 halo_cynanin halocya 95.0 0.13 2.8E-06 41.9 7.6 65 164-240 39-103 (115)
47 PF06525 SoxE: Sulfocyanin (So 93.6 0.58 1.3E-05 41.7 9.2 88 156-244 74-176 (196)
48 TIGR03094 sulfo_cyanin sulfocy 93.3 0.6 1.3E-05 41.5 8.7 83 157-243 74-174 (195)
49 TIGR02375 pseudoazurin pseudoa 92.7 0.26 5.6E-06 40.1 5.3 62 166-241 14-76 (116)
50 PF00116 COX2: Cytochrome C ox 91.4 0.65 1.4E-05 37.7 6.1 58 166-238 45-103 (120)
51 COG3794 PetE Plastocyanin [Ene 89.7 1.2 2.5E-05 37.2 6.3 63 166-240 53-115 (128)
52 TIGR02695 azurin azurin. Azuri 78.7 9.7 0.00021 31.8 6.9 30 214-243 83-116 (125)
53 COG4263 NosZ Nitrous oxide red 77.8 3.3 7.1E-05 41.8 4.5 60 167-237 558-618 (637)
54 TIGR02866 CoxB cytochrome c ox 69.6 17 0.00036 31.8 6.5 57 167-238 117-174 (201)
55 PF05938 Self-incomp_S1: Plant 68.0 18 0.00039 28.2 5.8 54 178-241 2-57 (110)
56 PRK10378 inactive ferrous ion 56.6 68 0.0015 31.3 8.7 67 161-239 38-105 (375)
57 COG1622 CyoA Heme/copper-type 42.7 88 0.0019 28.7 6.7 58 166-238 136-194 (247)
58 PF12690 BsuPI: Intracellular 40.1 1.6E+02 0.0035 22.2 7.4 65 159-235 8-80 (82)
59 COG4454 Uncharacterized copper 33.9 2E+02 0.0043 25.1 7.0 77 163-244 59-147 (158)
60 COG1188 Ribosome-associated he 33.0 32 0.0007 27.8 2.0 30 157-186 35-64 (100)
61 COG4263 NosZ Nitrous oxide red 30.3 91 0.002 31.9 5.0 59 169-238 550-609 (637)
62 PF05506 DUF756: Domain of unk 30.3 2.3E+02 0.0051 21.1 7.9 54 166-227 8-64 (89)
63 PF10989 DUF2808: Protein of u 27.0 64 0.0014 26.8 2.9 25 214-238 97-126 (146)
64 PRK05461 apaG CO2+/MG2+ efflux 25.4 1.4E+02 0.0031 24.7 4.7 20 206-226 67-86 (127)
65 PRK05659 sulfur carrier protei 25.3 66 0.0014 22.6 2.3 26 155-180 31-60 (66)
66 PF14451 Ub-Mut7C: Mut7-C ubiq 24.8 55 0.0012 25.0 2.0 28 153-180 47-74 (81)
67 cd00916 Npc2_like Niemann-Pick 23.4 3.7E+02 0.008 21.5 6.6 16 212-227 75-90 (123)
68 cd08058 MPN_euk_mb Mpr1p, Pad1 22.9 41 0.0009 26.5 1.0 9 233-241 69-77 (119)
69 cd00565 ThiS ThiaminS ubiquiti 22.8 69 0.0015 22.7 2.1 23 157-179 32-58 (65)
70 cd00918 Der-p2_like Several gr 22.8 3.1E+02 0.0067 22.2 6.1 22 205-227 65-86 (120)
71 KOG4387|consensus 22.5 34 0.00074 30.5 0.5 29 169-198 71-99 (191)
72 PRK07440 hypothetical protein; 21.8 77 0.0017 23.2 2.2 26 155-180 35-64 (70)
73 MTH00140 COX2 cytochrome c oxi 20.5 3.3E+02 0.0072 24.3 6.4 58 166-238 139-197 (228)
No 1
>PLN02354 copper ion binding / oxidoreductase
Probab=99.98 E-value=1.9e-32 Score=269.55 Aligned_cols=109 Identities=30% Similarity=0.638 Sum_probs=101.6
Q ss_pred ceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCce
Q psy12112 112 KLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT 191 (246)
Q Consensus 112 r~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~ts 191 (246)
++.+|+|++.+.. ..+||++|.+++|||++|||+|++++||+|+|+|+|+|+ ++++
T Consensus 26 ~~~~y~~~v~~~~-----------------------~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~-~~tt 81 (552)
T PLN02354 26 PYFFFTWNVTYGT-----------------------ASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD-EPFL 81 (552)
T ss_pred cEEEEEEEEEEEE-----------------------ecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC-CCcc
Confidence 4567888887654 258999999999999999999999999999999999998 8999
Q ss_pred eEeecccCCCCCCCCCCccccccccCCCCEEEEEEe--cCCcccEEccCCCCCCCC
Q psy12112 192 IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 192 IHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~--~q~GT~WYHsH~~~Q~~d 245 (246)
|||||++|++++||||+|+ |||||+||++|+|+|+ +++||||||||++.|++|
T Consensus 82 iHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~ 136 (552)
T PLN02354 82 LTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAA 136 (552)
T ss_pred cccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecC
Confidence 9999999999999999999 9999999999999999 699999999999999986
No 2
>PLN02835 oxidoreductase
Probab=99.98 E-value=3.2e-32 Score=267.15 Aligned_cols=109 Identities=28% Similarity=0.578 Sum_probs=101.2
Q ss_pred ceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCce
Q psy12112 112 KLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT 191 (246)
Q Consensus 112 r~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~ts 191 (246)
.+.+|+|++.+.. +.+||+++.+|+|||++|||+|++++||+|+|+|+|+|+ ++++
T Consensus 28 ~~~~y~~~v~~~~-----------------------~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~-~~tt 83 (539)
T PLN02835 28 PYKYYTWTVTYGT-----------------------ISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLD-QPFL 83 (539)
T ss_pred cEEEEEEEEEEEE-----------------------eccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCC-CCCc
Confidence 4567888877654 257999999999999999999999999999999999998 8999
Q ss_pred eEeecccCCCCCCCCCCccccccccCCCCEEEEEEe--cCCcccEEccCCCCCCCC
Q psy12112 192 IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 192 IHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~--~q~GT~WYHsH~~~Q~~d 245 (246)
|||||++|++++||||+++ |||||+||++|+|+|+ +++||||||||.+.|+++
T Consensus 84 iHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~ 138 (539)
T PLN02835 84 LTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAA 138 (539)
T ss_pred EEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcC
Confidence 9999999999999999999 9999999999999998 699999999999999986
No 3
>PLN02168 copper ion binding / pectinesterase
Probab=99.98 E-value=3.3e-32 Score=267.58 Aligned_cols=109 Identities=23% Similarity=0.520 Sum_probs=101.6
Q ss_pred ceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCce
Q psy12112 112 KLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT 191 (246)
Q Consensus 112 r~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~ts 191 (246)
.+.+|+|++.+.. ..+||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++
T Consensus 25 ~~~~~~~~vt~~~-----------------------~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~-~~tt 80 (545)
T PLN02168 25 PIVSYQWVVSYSQ-----------------------RFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLT-EPFL 80 (545)
T ss_pred cEEEEEEEEEEEE-----------------------ecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCC-CCcc
Confidence 4567888887654 358999999999999999999999999999999999998 8999
Q ss_pred eEeecccCCCCCCCCCCccccccccCCCCEEEEEEe--cCCcccEEccCCCCCCCC
Q psy12112 192 IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 192 IHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~--~q~GT~WYHsH~~~Q~~d 245 (246)
|||||++|.+++||||||+ |||||+||++|+|+|+ +|+||||||||.+.|+++
T Consensus 81 iHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~ 135 (545)
T PLN02168 81 MTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAA 135 (545)
T ss_pred EeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhC
Confidence 9999999999999999999 9999999999999999 599999999999999876
No 4
>PLN02991 oxidoreductase
Probab=99.97 E-value=4.4e-32 Score=266.59 Aligned_cols=109 Identities=25% Similarity=0.530 Sum_probs=101.1
Q ss_pred ceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCce
Q psy12112 112 KLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT 191 (246)
Q Consensus 112 r~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~ts 191 (246)
+..+|+|+|.+.. +.+||++|.+++|||++|||+|++++||+|+|+|+|+|+ ++++
T Consensus 27 ~~~~~~~~vt~~~-----------------------~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~-~~tt 82 (543)
T PLN02991 27 PYRFFEWHVTYGN-----------------------ISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLD-EPFL 82 (543)
T ss_pred ceEEEEEEEEEEE-----------------------eCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCC-CCcc
Confidence 4566888887654 358999999999999999999999999999999999998 8999
Q ss_pred eEeecccCCCCCCCCCCccccccccCCCCEEEEEEe--cCCcccEEccCCCCCCCC
Q psy12112 192 IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 192 IHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~--~q~GT~WYHsH~~~Q~~d 245 (246)
|||||++|..++||||+++ |||||+||++|+|+|+ +|+||||||+|.+.|+++
T Consensus 83 iHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~ 137 (543)
T PLN02991 83 ISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAA 137 (543)
T ss_pred EEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhC
Confidence 9999999999999999998 9999999999999999 599999999999999876
No 5
>PLN02792 oxidoreductase
Probab=99.97 E-value=7.6e-32 Score=264.50 Aligned_cols=95 Identities=29% Similarity=0.601 Sum_probs=91.9
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
.+||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|++++|+||+++ +||||+||++|+|+|+
T Consensus 29 ~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 29 SLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLD-EPFLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQV 106 (536)
T ss_pred CCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCC-CCcCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEe
Confidence 58999999999999999999999999999999999998 89999999999999999999988 8999999999999999
Q ss_pred -cCCcccEEccCCCCCCCC
Q psy12112 228 -ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 228 -~q~GT~WYHsH~~~Q~~d 245 (246)
+|+||||||||.+.|+++
T Consensus 107 ~~q~GT~WYHsH~~~q~~~ 125 (536)
T PLN02792 107 KDQVGSYFYFPSLAVQKAA 125 (536)
T ss_pred CCCccceEEecCcchhhhc
Confidence 599999999999999976
No 6
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.97 E-value=1.4e-31 Score=265.35 Aligned_cols=109 Identities=29% Similarity=0.603 Sum_probs=100.4
Q ss_pred ceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCC--eEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCC
Q psy12112 112 KLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADG--VERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLE 189 (246)
Q Consensus 112 r~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG--~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~ 189 (246)
.+.+|+|++.+... .+|| ..+.+++|||++|||+|++++||+|+|+|+|+++ ++
T Consensus 26 ~~~~y~~~v~~~~~-----------------------~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~-~~ 81 (596)
T PLN00044 26 PYAYYDWEVSYVSA-----------------------APLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALD-EP 81 (596)
T ss_pred ceEEEEEEEEEEEE-----------------------ccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCC-CC
Confidence 45778888887542 5888 5568999999999999999999999999999998 89
Q ss_pred ceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe--cCCcccEEccCCCCCCCC
Q psy12112 190 NTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 190 tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~--~q~GT~WYHsH~~~Q~~d 245 (246)
++|||||++|+.++|+|||++ |||||+||++|+|+|+ +|+||||||+|++.|++|
T Consensus 82 ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~ 138 (596)
T PLN00044 82 LLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAA 138 (596)
T ss_pred ccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhC
Confidence 999999999999999999998 9999999999999999 699999999999999986
No 7
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.97 E-value=1.6e-31 Score=261.32 Aligned_cols=95 Identities=40% Similarity=0.796 Sum_probs=91.5
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
.+||++|.+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++|+||+|++|||||+||++|+|+|+
T Consensus 16 ~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~-~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~ 94 (539)
T TIGR03389 16 TRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQ-YNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTI 94 (539)
T ss_pred ccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCC-CCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEe
Confidence 58999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred -cCCcccEEccCCCCCCC
Q psy12112 228 -ANAGTHFWHAHTGCPMS 244 (246)
Q Consensus 228 -~q~GT~WYHsH~~~Q~~ 244 (246)
+++||||||||.+.|+.
T Consensus 95 ~~~~GT~WYHsH~~~~~~ 112 (539)
T TIGR03389 95 TGQRGTLWWHAHISWLRA 112 (539)
T ss_pred cCCCeeEEEecCchhhhc
Confidence 59999999999987764
No 8
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.97 E-value=3.4e-31 Score=259.45 Aligned_cols=97 Identities=35% Similarity=0.659 Sum_probs=92.5
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
.+||++|.+|+|||++|||+|++++||+|+|+|+|+|+.++++|||||++|++++|+||+|++|||||+||++|+|+|+
T Consensus 21 ~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~ 100 (538)
T TIGR03390 21 KIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKP 100 (538)
T ss_pred ccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEe
Confidence 5899999999999999999999999999999999999767999999999999999999999999999999999999998
Q ss_pred --cCCcccEEccCCCCCCCC
Q psy12112 228 --ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 228 --~q~GT~WYHsH~~~Q~~d 245 (246)
+++||||||||.+.|+.+
T Consensus 101 ~~~q~GT~WYHsH~~~Q~~~ 120 (538)
T TIGR03390 101 EPGDAGSYFYHSHVGFQAVT 120 (538)
T ss_pred cCCCCeeeEEecCCchhhhc
Confidence 389999999999999754
No 9
>PLN02191 L-ascorbate oxidase
Probab=99.97 E-value=5e-31 Score=260.35 Aligned_cols=97 Identities=43% Similarity=0.819 Sum_probs=93.7
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
.+||+++.+++|||++|||+|++++||+|+|+|+|+|+.++++|||||++|++++|+||+|++|||||+||++|+|+|+
T Consensus 36 ~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 36 WPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV 115 (574)
T ss_pred ccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC
Confidence 5899999999999999999999999999999999999756899999999999999999999999999999999999999
Q ss_pred cCCcccEEccCCCCCCCC
Q psy12112 228 ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 228 ~q~GT~WYHsH~~~Q~~d 245 (246)
+++||||||||.+.|+++
T Consensus 116 ~~~GT~wYHsH~~~q~~~ 133 (574)
T PLN02191 116 EKPGTHFYHGHYGMQRSA 133 (574)
T ss_pred CCCeEEEEeeCcHHHHhC
Confidence 999999999999999876
No 10
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.97 E-value=2.6e-31 Score=213.85 Aligned_cols=95 Identities=46% Similarity=0.848 Sum_probs=88.5
Q ss_pred EeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe
Q psy12112 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 227 (246)
Q Consensus 148 v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~ 227 (246)
+..+|..+.+|+|||++|||+|+|++||+|+|+|+|++. .+++|||||+++...+++||+++++||+|+||++++|+|+
T Consensus 7 ~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~ 85 (117)
T PF07732_consen 7 VSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFT 85 (117)
T ss_dssp EETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEE
T ss_pred EEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccccceeEEeecceeeeEe
Confidence 346666699999999999999999999999999999997 8999999999999988999999999999999999999999
Q ss_pred -cC-CcccEEccCCCCCC
Q psy12112 228 -AN-AGTHFWHAHTGCPM 243 (246)
Q Consensus 228 -~q-~GT~WYHsH~~~Q~ 243 (246)
.+ +||||||||...|+
T Consensus 86 ~~~~~Gt~wYH~H~~~~~ 103 (117)
T PF07732_consen 86 ANQQAGTYWYHSHVHGQQ 103 (117)
T ss_dssp ESSCSEEEEEEECSTTHH
T ss_pred eeccccceeEeeCCCchh
Confidence 55 99999999998753
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.97 E-value=4.3e-30 Score=251.62 Aligned_cols=97 Identities=41% Similarity=0.756 Sum_probs=93.2
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
.+||+++.+|+|||++|||+|++++||+|+|+|+|++..++++|||||++|.+++||||+++++||+|+||++|+|+|+
T Consensus 14 ~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~ 93 (541)
T TIGR03388 14 SPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV 93 (541)
T ss_pred cCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc
Confidence 5899999999999999999999999999999999998657899999999999999999999999999999999999999
Q ss_pred cCCcccEEccCCCCCCCC
Q psy12112 228 ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 228 ~q~GT~WYHsH~~~Q~~d 245 (246)
+++||||||||.+.|+++
T Consensus 94 ~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 94 DRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred CCCEEEEEEecchHHhhc
Confidence 999999999999999875
No 12
>KOG1263|consensus
Probab=99.96 E-value=2.5e-29 Score=247.95 Aligned_cols=110 Identities=35% Similarity=0.720 Sum_probs=103.7
Q ss_pred CceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCc
Q psy12112 111 PKLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLEN 190 (246)
Q Consensus 111 pr~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~t 190 (246)
.++|.|.|++.+... .++|.++.+++|||++|||+|+|++||+|+|+|.|+++ +++
T Consensus 26 ~~~~~~~~~v~~~~~-----------------------s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~ 81 (563)
T KOG1263|consen 26 APIRFHTWKVTYGTA-----------------------SPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPF 81 (563)
T ss_pred CceEEEEeeEEeeee-----------------------ccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-Cce
Confidence 578888899887653 47788999999999999999999999999999999998 899
Q ss_pred eeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe--cCCcccEEccCCCCCCCC
Q psy12112 191 TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 191 sIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~--~q~GT~WYHsH~~~Q~~d 245 (246)
+|||||++|+.++|+|| +.+|||||+||++|+|+|+ +|.||||||+|.+.||++
T Consensus 82 sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~ 137 (563)
T KOG1263|consen 82 SIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT 137 (563)
T ss_pred EEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc
Confidence 99999999999999999 9999999999999999999 699999999999999987
No 13
>PLN02604 oxidoreductase
Probab=99.96 E-value=2.7e-29 Score=247.40 Aligned_cols=112 Identities=37% Similarity=0.666 Sum_probs=102.9
Q ss_pred CceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCc
Q psy12112 111 PKLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLEN 190 (246)
Q Consensus 111 pr~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~t 190 (246)
.++.+|+|+|.+.. +.+||++|.+|+|||++|||+|++++||+|+|+|+|++..+++
T Consensus 22 ~~~~~y~~~vt~~~-----------------------~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~ 78 (566)
T PLN02604 22 ARIRRYKWEVKYEY-----------------------KSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENV 78 (566)
T ss_pred CcEEEEEEEEEEEE-----------------------ECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCC
Confidence 46777888887654 2589999999999999999999999999999999999854789
Q ss_pred eeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccCCCCCCCC
Q psy12112 191 TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 191 sIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH~~~Q~~d 245 (246)
+|||||+++.+++|+||+++++||+|+||++++|+|+ +++||||||||.+.|+++
T Consensus 79 ~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 79 AIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred CEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 9999999999999999999999999999999999999 999999999999988764
No 14
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.94 E-value=5.1e-27 Score=232.69 Aligned_cols=94 Identities=37% Similarity=0.639 Sum_probs=88.4
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
..+|+.+.+|+|||++|||+|++++||+|+|+|+|+++ ++++|||||++++. .+||+|+++||+|+||++|+|+|+
T Consensus 58 ~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~ 134 (587)
T TIGR01480 58 NFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP-EDTSIHWHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPV 134 (587)
T ss_pred ecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCC-CCceEEcCCCcCCc--cccCCCcccccccCCCCeEEEEEEC
Confidence 46788999999999999999999999999999999998 89999999999864 599999999999999999999999
Q ss_pred cCCcccEEccCCCCCCCC
Q psy12112 228 ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 228 ~q~GT~WYHsH~~~Q~~d 245 (246)
.++||||||||.+.|+.+
T Consensus 135 ~~~GTyWYHsH~~~q~~~ 152 (587)
T TIGR01480 135 RQSGTYWYHSHSGFQEQA 152 (587)
T ss_pred CCCeeEEEecCchhHhhc
Confidence 999999999999988753
No 15
>PRK10965 multicopper oxidase; Provisional
Probab=99.91 E-value=2.3e-24 Score=211.14 Aligned_cols=84 Identities=35% Similarity=0.584 Sum_probs=77.2
Q ss_pred CCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-c
Q psy12112 150 ADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A 228 (246)
Q Consensus 150 ~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~ 228 (246)
.++....+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++++. +||+| ||+|+||++|+|+|+ +
T Consensus 60 ~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~~~--~DG~p---q~~I~PG~s~~Y~f~~~ 133 (523)
T PRK10965 60 AGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVPGE--VDGGP---QGIIAPGGKRTVTFTVD 133 (523)
T ss_pred cCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCC-CCccEEcccccCCCc--cCCCC---CCCCCCCCEEEEEeccC
Confidence 3456667999999999999999999999999999999 899999999999864 89987 899999999999999 6
Q ss_pred -CCcccEEccCC
Q psy12112 229 -NAGTHFWHAHT 239 (246)
Q Consensus 229 -q~GT~WYHsH~ 239 (246)
++||||||+|.
T Consensus 134 q~aGT~WYH~H~ 145 (523)
T PRK10965 134 QPAATCWFHPHQ 145 (523)
T ss_pred CCCceEEEecCC
Confidence 58999999997
No 16
>PRK10883 FtsI repressor; Provisional
Probab=99.89 E-value=6.7e-23 Score=198.46 Aligned_cols=87 Identities=22% Similarity=0.360 Sum_probs=78.0
Q ss_pred eCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-
Q psy12112 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 149 ~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~- 227 (246)
+..|.++.+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||||++++.. .+||++ ++|+||++++|+|+
T Consensus 59 ~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~ 132 (471)
T PRK10883 59 FTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPI 132 (471)
T ss_pred ecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEec
Confidence 34567889999999999999999999999999999998 899999999999875 467754 57999999999998
Q ss_pred -cCCcccEEccCCCC
Q psy12112 228 -ANAGTHFWHAHTGC 241 (246)
Q Consensus 228 -~q~GT~WYHsH~~~ 241 (246)
+++||||||+|.+.
T Consensus 133 ~~~aGT~WYH~H~~~ 147 (471)
T PRK10883 133 RQNAATCWYHANTPN 147 (471)
T ss_pred CCCceeeEEccCCCC
Confidence 56999999999776
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.87 E-value=1.7e-21 Score=179.74 Aligned_cols=101 Identities=27% Similarity=0.454 Sum_probs=86.3
Q ss_pred CceEEEEEEEeEEEEecccccccCCCCccceeeeeeEEeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCC-CC
Q psy12112 111 PKLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDG-LE 189 (246)
Q Consensus 111 pr~c~~~~~ie~~~~~~~~~~~~~~~~t~~~~~~~~~v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~-~~ 189 (246)
+.+..|++++++... .+.+|+.+.+|+|||++|||+|++++||+|+|+|+|++.. .+
T Consensus 25 ~~~~~~~l~a~~~~~----------------------~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~ 82 (311)
T TIGR02376 25 PKVVEVTMTIEEKKM----------------------VIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMP 82 (311)
T ss_pred CcEEEEEEEEEEEEE----------------------EeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCc
Confidence 466677777776542 2468999999999999999999999999999999999742 57
Q ss_pred ceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccCCC
Q psy12112 190 NTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHTG 240 (246)
Q Consensus 190 tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH~~ 240 (246)
+++||||.. ++||++.+++ |+||++++|+|. +++||||||||..
T Consensus 83 h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~ 127 (311)
T TIGR02376 83 HNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKATRPGAFVYHCAPP 127 (311)
T ss_pred eeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcCCC
Confidence 999999962 4799888775 999999999999 9999999999953
No 18
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=5.6e-19 Score=169.03 Aligned_cols=95 Identities=37% Similarity=0.651 Sum_probs=86.5
Q ss_pred EeCCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe
Q psy12112 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 227 (246)
Q Consensus 148 v~~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~ 227 (246)
...++....+|.+||++|||+|++++||+|.|+++|.+. ++++|||||+..+ +.+||++..+++++.||++++|.|+
T Consensus 45 ~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~ 121 (451)
T COG2132 45 AFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFT 121 (451)
T ss_pred eeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeec
Confidence 456777888999999999999999999999999999987 4599999998877 5699999999999999999999999
Q ss_pred -cCCcccEEccCCCCCCCC
Q psy12112 228 -ANAGTHFWHAHTGCPMSE 245 (246)
Q Consensus 228 -~q~GT~WYHsH~~~Q~~d 245 (246)
+++||+|||+|.+.|..+
T Consensus 122 ~~~~gT~wyh~H~~~Q~~~ 140 (451)
T COG2132 122 QDVPGTYWYHPHTHGQVYD 140 (451)
T ss_pred CCCCcceEeccCCCchhhc
Confidence 888999999999987654
No 19
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.66 E-value=1.8e-16 Score=157.78 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=77.1
Q ss_pred EeCCCeEEEEEEEcCCCCCC--eEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCcc--ccccccCCCCEEE
Q psy12112 148 VLADGVERGILAVNRMLPGP--SIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--VTQCPITQGNTFR 223 (246)
Q Consensus 148 v~~DG~~r~v~tiNGq~PGP--tI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~--vTqcpI~PGes~t 223 (246)
.+.++.++.+|+|||+.+++ .|++++||+|+|+|.|.+. ++|+|||||+.+.... .||... -.+..|+||++++
T Consensus 478 ~L~g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~-~~G~~~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 478 HLTGNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELED-GQGEFQVRKHTVDVPPGGKRS 555 (587)
T ss_pred EEcCCCceeEEEECCccCCCCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeec-CCCcccccCCceeeCCCCEEE
Confidence 34566788899999998774 7999999999999999998 8999999999765432 355311 1237899999999
Q ss_pred EEEe-cCCcccEEccCCCCCC
Q psy12112 224 YQFT-ANAGTHFWHAHTGCPM 243 (246)
Q Consensus 224 Y~F~-~q~GT~WYHsH~~~Q~ 243 (246)
|+|. +++|+||||||...+.
T Consensus 556 ~~f~ad~pG~w~~HCH~l~H~ 576 (587)
T TIGR01480 556 FRVTADALGRWAYHCHMLLHM 576 (587)
T ss_pred EEEECCCCeEEEEcCCCHHHH
Confidence 9999 9999999999976543
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.65 E-value=5.1e-16 Score=130.33 Aligned_cols=94 Identities=20% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCCeEEEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC--CCCceeEeecccCCCCCCCCCCccccccccCCC----CE--
Q psy12112 150 ADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMD--GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQG----NT-- 221 (246)
Q Consensus 150 ~DG~~r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~--~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PG----es-- 221 (246)
+++....-+.++| +++|+|++++||+|+|.|+|.+. .....||+||...+..+.|||++.+++|+|.|+ +.
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 5566666778888 78999999999999999999964 245677777766655556999999999999884 11
Q ss_pred EEEEEe-cCCcccEEccCCCCCCC
Q psy12112 222 FRYQFT-ANAGTHFWHAHTGCPMS 244 (246)
Q Consensus 222 ~tY~F~-~q~GT~WYHsH~~~Q~~ 244 (246)
.++.|+ .++||||||||...|+.
T Consensus 115 ~~~tf~f~~aGtywyhC~~pgH~~ 138 (148)
T TIGR03095 115 TDFTYHFSTAGTYWYLCTYPGHAE 138 (148)
T ss_pred eEEEEECCCCeEEEEEcCChhHHH
Confidence 345566 78999999999988875
No 21
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.09 E-value=8.3e-10 Score=92.19 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCeEEEEE-EEcCCCCCCeEEEecCCEEEEEEEeCCCCCCc--eeEeecccCCCCCCCCCCccccccccCCCCEEEEEE
Q psy12112 150 ADGVERGIL-AVNRMLPGPSIQVCEGDRVVVDVRNSMDGLEN--TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 226 (246)
Q Consensus 150 ~DG~~r~v~-tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~t--sIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F 226 (246)
..|+....+ ++|+++..+.|+|++||+|.|+|.|..+ .++ .|+++| . +..|+||++++|+|
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g-----------i----s~~I~pGet~TitF 106 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG-----------I----SEVIKAGETKTISF 106 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCC-CccceEECCCC-----------c----ceEECCCCeEEEEE
Confidence 567776666 9999999999999999999999999875 333 232222 1 23589999999999
Q ss_pred e-cCCcccEEccCCCC
Q psy12112 227 T-ANAGTHFWHAHTGC 241 (246)
Q Consensus 227 ~-~q~GT~WYHsH~~~ 241 (246)
+ +++|+|+|||-.+.
T Consensus 107 ~adKpG~Y~y~C~~HP 122 (135)
T TIGR03096 107 KADKAGAFTIWCQLHP 122 (135)
T ss_pred ECCCCEEEEEeCCCCC
Confidence 9 99999999997653
No 22
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.85 E-value=3.6e-09 Score=84.89 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=59.1
Q ss_pred CCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCc--------------cccccccCCCCEEEEEEe-cC
Q psy12112 165 PGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------------FVTQCPITQGNTFRYQFT-AN 229 (246)
Q Consensus 165 PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp--------------~vTqcpI~PGes~tY~F~-~q 229 (246)
..+.++++.|+.|++.+.|... ..+++|+||..+......++.. ......|.||+..+.+|. ++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 3588999999999999999887 7999999998764322111111 123467999999999999 99
Q ss_pred CcccEEccCCC
Q psy12112 230 AGTHFWHAHTG 240 (246)
Q Consensus 230 ~GT~WYHsH~~ 240 (246)
+|.|.||||.-
T Consensus 111 ~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 PGPWLFHCHIL 121 (138)
T ss_dssp TEEEEEEESSH
T ss_pred ceEEEEEEchH
Confidence 99999999974
No 23
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=2e-06 Score=82.80 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=66.8
Q ss_pred EEEEEEEcCCCCC---CeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCC------CCCccccccccCCCCEEEE
Q psy12112 154 ERGILAVNRMLPG---PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYS------DGVPFVTQCPITQGNTFRY 224 (246)
Q Consensus 154 ~r~v~tiNGq~PG---PtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~------DGvp~vTqcpI~PGes~tY 224 (246)
...+|.+|++... +++.++.|+.+++.+.|... +.|.+|.||+.+...... .+... ....+.||+...+
T Consensus 341 ~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~k-DTv~v~~~~~~~v 418 (451)
T COG2132 341 GGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWK-DTVLVAPGERLLV 418 (451)
T ss_pred ccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccc-eEEEeCCCeEEEE
Confidence 3467889998544 67899999999999999998 899999999876533211 11111 1346899999999
Q ss_pred EEe-cCCcccEEccCCCC
Q psy12112 225 QFT-ANAGTHFWHAHTGC 241 (246)
Q Consensus 225 ~F~-~q~GT~WYHsH~~~ 241 (246)
+|+ +.+|.|.||||.-.
T Consensus 419 ~~~a~~~g~~~~HCH~l~ 436 (451)
T COG2132 419 RFDADYPGPWMFHCHILE 436 (451)
T ss_pred EEeCCCCCceEEeccchh
Confidence 999 99999999999644
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=98.02 E-value=8.6e-06 Score=80.77 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=57.2
Q ss_pred EEEcCC-CC--CCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCcc-------ccccccCCCCEEEEE--
Q psy12112 158 LAVNRM-LP--GPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQ-- 225 (246)
Q Consensus 158 ~tiNGq-~P--GPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~-------vTqcpI~PGes~tY~-- 225 (246)
|+|||+ +. -|.++++.|+..+++|.|......|.||+||..+.... .||.+- .....|.| ++.++.
T Consensus 414 ~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~-~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~ 491 (523)
T PRK10965 414 NKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVRVEG-GRSEVLVK 491 (523)
T ss_pred ccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEE-ecCCCCCccccccccEEEECC-cEEEEEEE
Confidence 489998 33 36689999999999999987435899999998765332 344321 11234666 444443
Q ss_pred Ee---cCCcccEEccCCCCC
Q psy12112 226 FT---ANAGTHFWHAHTGCP 242 (246)
Q Consensus 226 F~---~q~GT~WYHsH~~~Q 242 (246)
|. +..|.|.||||.-.+
T Consensus 492 f~~~~~~~g~~~~HCHiL~H 511 (523)
T PRK10965 492 FDHDAPKEHAYMAHCHLLEH 511 (523)
T ss_pred ecCCCCCCCCEEEEeCchhh
Confidence 43 467899999997543
No 25
>PLN02835 oxidoreductase
Probab=98.01 E-value=7.5e-06 Score=81.44 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=53.7
Q ss_pred EEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCC--------------CccccccccCCCCEEEEEEe-cCCccc
Q psy12112 169 IQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGTH 233 (246)
Q Consensus 169 I~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DG--------------vp~vTqcpI~PGes~tY~F~-~q~GT~ 233 (246)
+.++.|+.|+|.+.|... ..|.||+||..+.....-+| .+.-....|++++....+|+ +++|-|
T Consensus 413 ~~~~~~~~Veivi~N~~~-~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~W 491 (539)
T PLN02835 413 MQTSLHDFLEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMW 491 (539)
T ss_pred EEcCCCCEEEEEEECCCC-CCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEe
Confidence 566779999999999876 78999999986542221122 12222345888999999999 999999
Q ss_pred EEccCCC
Q psy12112 234 FWHAHTG 240 (246)
Q Consensus 234 WYHsH~~ 240 (246)
++|||+-
T Consensus 492 l~HCHi~ 498 (539)
T PLN02835 492 NMRSAIW 498 (539)
T ss_pred eeeecch
Confidence 9999974
No 26
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=97.91 E-value=1.7e-05 Score=78.60 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=54.5
Q ss_pred EEEecCCEEEEEEEeCCC-----CCCceeEeecccCCCCCCCCC---------------CccccccccCCCCEEEEEEe-
Q psy12112 169 IQVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDG---------------VPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 169 I~v~~GD~V~V~V~N~l~-----~~~tsIHwHGl~q~~t~~~DG---------------vp~vTqcpI~PGes~tY~F~- 227 (246)
++++.|+.|+|.|.|... ..+|.||+||..+.......| .+.....-|+|+.-...+|+
T Consensus 418 ~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~a 497 (541)
T TIGR03388 418 YRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVA 497 (541)
T ss_pred EEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEEC
Confidence 788899999999999631 257999999986542211111 12223455888888899999
Q ss_pred cCCcccEEccCCCCC
Q psy12112 228 ANAGTHFWHAHTGCP 242 (246)
Q Consensus 228 ~q~GT~WYHsH~~~Q 242 (246)
++||-|++|||...+
T Consensus 498 dNPG~W~~HCHi~~H 512 (541)
T TIGR03388 498 DNPGVWAFHCHIEPH 512 (541)
T ss_pred CCCeEeeeeccchhh
Confidence 999999999998654
No 27
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=97.90 E-value=2.5e-05 Score=72.57 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=66.0
Q ss_pred EEEEEcCCC--CCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCcc------ccccccCCCCEEEEEEe
Q psy12112 156 GILAVNRML--PGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT 227 (246)
Q Consensus 156 ~v~tiNGq~--PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~------vTqcpI~PGes~tY~F~ 227 (246)
..++|||+. ..|.+.++.|+.+++++.|........+|.+|...... ..||.+. +..-.|.||++....++
T Consensus 189 ~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v-~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~ 267 (311)
T TIGR02376 189 THVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYV-WVTGKFANPPNRDVETWFIPGGSAAAALYT 267 (311)
T ss_pred CEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEE-EECCcccCCCCCCcceEEECCCceEEEEEE
Confidence 478999983 23678999999999999998765667899998765432 3477532 33457999999999999
Q ss_pred -cCCcccEEccCCC
Q psy12112 228 -ANAGTHFWHAHTG 240 (246)
Q Consensus 228 -~q~GT~WYHsH~~ 240 (246)
+++|.|+.|||..
T Consensus 268 ~~~pG~y~~~~~~~ 281 (311)
T TIGR02376 268 FEQPGVYAYVDHNL 281 (311)
T ss_pred eCCCeEEEEECcHH
Confidence 8899999999953
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=97.86 E-value=2.6e-05 Score=77.32 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=55.4
Q ss_pred eEEEecCCEEEEEEEeCCC--CCCceeEeecccCCCCCCCCCC---------------ccccccccCCCCEEEEEEe-cC
Q psy12112 168 SIQVCEGDRVVVDVRNSMD--GLENTIHWHGIHQRGTQYSDGV---------------PFVTQCPITQGNTFRYQFT-AN 229 (246)
Q Consensus 168 tI~v~~GD~V~V~V~N~l~--~~~tsIHwHGl~q~~t~~~DGv---------------p~vTqcpI~PGes~tY~F~-~q 229 (246)
+++++.|+.|+|.+.|... ..+|.||+||..+.......|. +.-....|+++.....+|+ ++
T Consensus 416 v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adN 495 (539)
T TIGR03389 416 VVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADN 495 (539)
T ss_pred EEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCC
Confidence 4888999999999999742 2489999999865422111121 1112345788888999999 99
Q ss_pred CcccEEccCCCCCC
Q psy12112 230 AGTHFWHAHTGCPM 243 (246)
Q Consensus 230 ~GT~WYHsH~~~Q~ 243 (246)
+|-|++|||...+.
T Consensus 496 PG~W~~HCHi~~H~ 509 (539)
T TIGR03389 496 PGVWFMHCHLEVHT 509 (539)
T ss_pred CeEEEEEecccchh
Confidence 99999999987653
No 29
>PLN02604 oxidoreductase
Probab=97.82 E-value=2.8e-05 Score=77.61 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=54.5
Q ss_pred EEEecCCEEEEEEEeCCC-----CCCceeEeecccCCCCCCCCC---------------CccccccccCCCCEEEEEEe-
Q psy12112 169 IQVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDG---------------VPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 169 I~v~~GD~V~V~V~N~l~-----~~~tsIHwHGl~q~~t~~~DG---------------vp~vTqcpI~PGes~tY~F~- 227 (246)
+.++.|+.|+|.+.|... ..+|.||+||..+.......| .+.-....|+|+.....+|+
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~a 520 (566)
T PLN02604 441 YRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRA 520 (566)
T ss_pred EEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEEC
Confidence 788899999999999742 257999999986542211111 12223355888888899999
Q ss_pred cCCcccEEccCCCCC
Q psy12112 228 ANAGTHFWHAHTGCP 242 (246)
Q Consensus 228 ~q~GT~WYHsH~~~Q 242 (246)
+++|-|++|||...+
T Consensus 521 DNPG~WlfHCHI~~H 535 (566)
T PLN02604 521 DNPGVWAFHCHIESH 535 (566)
T ss_pred CCCeEeeEeecchhH
Confidence 999999999997654
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=97.68 E-value=8.1e-05 Score=74.37 Aligned_cols=72 Identities=8% Similarity=-0.052 Sum_probs=53.9
Q ss_pred CeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCC----CCCCC----------CccccccccCCCCEEEEEEe-cCCc
Q psy12112 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGT----QYSDG----------VPFVTQCPITQGNTFRYQFT-ANAG 231 (246)
Q Consensus 167 PtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t----~~~DG----------vp~vTqcpI~PGes~tY~F~-~q~G 231 (246)
-.++++.|+.|.|.+.|... ..|.||+||..+... ...|+ .+......+++|.-...+|+ ++||
T Consensus 415 ~v~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG 493 (545)
T PLN02168 415 SVVDIHYKDFYHIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQG 493 (545)
T ss_pred eEEEecCCCEEEEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCe
Confidence 34788999999999999876 689999999764311 11111 12222345788999999999 9999
Q ss_pred ccEEccCC
Q psy12112 232 THFWHAHT 239 (246)
Q Consensus 232 T~WYHsH~ 239 (246)
.|++|||+
T Consensus 494 ~Wl~HCHi 501 (545)
T PLN02168 494 MWNVRSQK 501 (545)
T ss_pred EEeeeecC
Confidence 99999997
No 31
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.68 E-value=0.00018 Score=73.15 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=59.4
Q ss_pred EEeCCCeEE--EEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEE
Q psy12112 147 CVLADGVER--GILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRY 224 (246)
Q Consensus 147 ~v~~DG~~r--~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY 224 (246)
.+..+|.+. .+..+.-.|--+.|+|++||+|.|+|+|.-..+..+ ||+..+.. |+-. -|.||++.+.
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI~~----dv~PG~t~sv 601 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GVNM----EVAPQATASV 601 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----CccE----EEcCCceEEE
Confidence 356777544 455556667667799999999999999953312222 77766532 1221 3789999999
Q ss_pred EEe-cCCcccEEccCC
Q psy12112 225 QFT-ANAGTHFWHAHT 239 (246)
Q Consensus 225 ~F~-~q~GT~WYHsH~ 239 (246)
.|+ +++|.|||||..
T Consensus 602 tF~adkPGvy~~~Cte 617 (635)
T PRK02888 602 TFTADKPGVYWYYCTW 617 (635)
T ss_pred EEEcCCCEEEEEECCc
Confidence 999 999999999974
No 32
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.65 E-value=7.8e-05 Score=58.08 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCccc
Q psy12112 155 RGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTH 233 (246)
Q Consensus 155 r~v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~ 233 (246)
..+..-|+.|--..|+++.|+.|.|+++|... ..+.+..-++. . .-.|.||++.++.|. ..+|+|
T Consensus 23 v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~-~~h~~~i~~~~------------~-~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 23 VTITVTDFGFSPSTITVKAGQPVTLTFTNNDS-RPHEFVIPDLG------------I-SKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp -------EEEES-EEEEETTCEEEEEEEE-SS-S-EEEEEGGGT------------E-EEEE-TT-EEEEEEEE-S-EEE
T ss_pred ccccccCCeEecCEEEEcCCCeEEEEEEECCC-CcEEEEECCCc------------e-EEEECCCCEEEEEEcCCCCEEE
Confidence 33444456666678999999999999999976 55555444321 1 135899999999999 999999
Q ss_pred EEccCCCCC
Q psy12112 234 FWHAHTGCP 242 (246)
Q Consensus 234 WYHsH~~~Q 242 (246)
-|+|-.+..
T Consensus 89 ~~~C~~~~~ 97 (104)
T PF13473_consen 89 EFYCTMHPN 97 (104)
T ss_dssp EEB-SSS-T
T ss_pred EEEcCCCCc
Confidence 999987654
No 33
>PLN02354 copper ion binding / oxidoreductase
Probab=97.58 E-value=8.9e-05 Score=74.12 Aligned_cols=72 Identities=13% Similarity=0.012 Sum_probs=53.1
Q ss_pred eEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCC--------------CccccccccCCCCEEEEEEe-cCCcc
Q psy12112 168 SIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT 232 (246)
Q Consensus 168 tI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DG--------------vp~vTqcpI~PGes~tY~F~-~q~GT 232 (246)
+++++.|+.|+|.+.|... .+|.||+||..+......+| .+......|+++.-...+|+ +++|-
T Consensus 419 v~~~~~~~~VeiVi~n~~~-~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGv 497 (552)
T PLN02354 419 VLNITFRTFVEIIFENHEK-SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGM 497 (552)
T ss_pred eEEcCCCCEEEEEEeCCCC-CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeE
Confidence 4677889999999999865 68999999976431111111 12222345788888889999 99999
Q ss_pred cEEccCCC
Q psy12112 233 HFWHAHTG 240 (246)
Q Consensus 233 ~WYHsH~~ 240 (246)
|++|||+-
T Consensus 498 W~~HCHi~ 505 (552)
T PLN02354 498 WNIRSENW 505 (552)
T ss_pred Eeeecccc
Confidence 99999983
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.55 E-value=0.00014 Score=72.38 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=51.2
Q ss_pred eEEEecCCEEEEEEEeCC-------CCCCceeEeecccCCCCCCCCCC--------------c-ccccccc---------
Q psy12112 168 SIQVCEGDRVVVDVRNSM-------DGLENTIHWHGIHQRGTQYSDGV--------------P-FVTQCPI--------- 216 (246)
Q Consensus 168 tI~v~~GD~V~V~V~N~l-------~~~~tsIHwHGl~q~~t~~~DGv--------------p-~vTqcpI--------- 216 (246)
++.++.|+.|+|.|.|.. ....|.||+||..+.....-+|. | .-...-|
T Consensus 413 ~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~ 492 (538)
T TIGR03390 413 AFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVP 492 (538)
T ss_pred EEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccc
Confidence 467888999999999974 12689999999654322112221 1 1111112
Q ss_pred -CCCCEEEEEEe-cCCcccEEccCCCCC
Q psy12112 217 -TQGNTFRYQFT-ANAGTHFWHAHTGCP 242 (246)
Q Consensus 217 -~PGes~tY~F~-~q~GT~WYHsH~~~Q 242 (246)
.|+.-...+|. +++|.|.+|||+..+
T Consensus 493 ~~~~~~~~ir~~~dNPG~W~~HCHi~~H 520 (538)
T TIGR03390 493 GAPAGWRAWRIRVTNPGVWMMHCHILQH 520 (538)
T ss_pred cCCCceEEEEEEcCCCeeEEEeccchhh
Confidence 36777788999 999999999998654
No 35
>PLN02191 L-ascorbate oxidase
Probab=97.51 E-value=0.00018 Score=72.15 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=53.6
Q ss_pred EEEecCCEEEEEEEeCC-----CCCCceeEeecccCCCCCC----CC-----------CCccccccccCCCCEEEEEEe-
Q psy12112 169 IQVCEGDRVVVDVRNSM-----DGLENTIHWHGIHQRGTQY----SD-----------GVPFVTQCPITQGNTFRYQFT- 227 (246)
Q Consensus 169 I~v~~GD~V~V~V~N~l-----~~~~tsIHwHGl~q~~t~~----~D-----------Gvp~vTqcpI~PGes~tY~F~- 227 (246)
+.+..|+.|.|.+.|.. ....|.||+||..+..... .| ..+......|+|+.-...+|+
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~a 520 (574)
T PLN02191 441 YVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVT 520 (574)
T ss_pred EEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEEC
Confidence 56677999999999974 1368999999976431111 11 122223345788888899999
Q ss_pred cCCcccEEccCCCCC
Q psy12112 228 ANAGTHFWHAHTGCP 242 (246)
Q Consensus 228 ~q~GT~WYHsH~~~Q 242 (246)
++||-|..|||+..+
T Consensus 521 DNPG~Wl~HCHi~~H 535 (574)
T PLN02191 521 DNPGVWFFHCHIEPH 535 (574)
T ss_pred CCCEEEEEecCchhh
Confidence 999999999998654
No 36
>PLN02792 oxidoreductase
Probab=97.50 E-value=0.00018 Score=71.83 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=54.7
Q ss_pred eEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCC--------------CccccccccCCCCEEEEEEe-cCCcc
Q psy12112 168 SIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT 232 (246)
Q Consensus 168 tI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DG--------------vp~vTqcpI~PGes~tY~F~-~q~GT 232 (246)
++.++.|+.|+|.+.|... ..|.||+||..+......+| .+......|+|+.-...+|. +++|-
T Consensus 404 v~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGv 482 (536)
T PLN02792 404 VMGAHHNAFLEIIFQNREK-IVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGM 482 (536)
T ss_pred EEEcCCCCEEEEEEECCCC-CCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEE
Confidence 4678899999999999765 68999999976432211111 12222345788888889999 99999
Q ss_pred cEEccCCCCC
Q psy12112 233 HFWHAHTGCP 242 (246)
Q Consensus 233 ~WYHsH~~~Q 242 (246)
|++|||...+
T Consensus 483 W~~HCh~~~h 492 (536)
T PLN02792 483 WNLRSQFWAR 492 (536)
T ss_pred EeeeEcchhc
Confidence 9999997643
No 37
>PLN02991 oxidoreductase
Probab=97.47 E-value=0.00018 Score=71.92 Aligned_cols=72 Identities=13% Similarity=-0.052 Sum_probs=53.2
Q ss_pred eEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCC----CCCC----------CccccccccCCCCEEEEEEe-cCCcc
Q psy12112 168 SIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQ----YSDG----------VPFVTQCPITQGNTFRYQFT-ANAGT 232 (246)
Q Consensus 168 tI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~----~~DG----------vp~vTqcpI~PGes~tY~F~-~q~GT 232 (246)
++.++.|+.|+|.+.|... ..|.||+||..+.... ..|+ .+......|+++.-...+|+ +++|.
T Consensus 411 v~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~ 489 (543)
T PLN02991 411 VMQTDYKAFVEIVFENWED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGM 489 (543)
T ss_pred EEEcCCCCEEEEEEeCCCC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEE
Confidence 3677889999999999876 6899999997643211 1111 11122345788888899999 99999
Q ss_pred cEEccCCC
Q psy12112 233 HFWHAHTG 240 (246)
Q Consensus 233 ~WYHsH~~ 240 (246)
|++|||+-
T Consensus 490 W~~HCHi~ 497 (543)
T PLN02991 490 WNLRSELW 497 (543)
T ss_pred eeeeeCcc
Confidence 99999973
No 38
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.37 E-value=0.00045 Score=57.62 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=63.0
Q ss_pred EEEEEEcCC------------CCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCcc----ccccccCC
Q psy12112 155 RGILAVNRM------------LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQ 218 (246)
Q Consensus 155 r~v~tiNGq------------~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~----vTqcpI~P 218 (246)
-..++|||+ -.-|+|.++.|++++++|.|........++..|..+... ..||++- +..-.|.|
T Consensus 36 ~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Vi-a~DG~~v~p~~~~~l~l~~ 114 (159)
T PF00394_consen 36 PDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVI-AADGVPVEPYKVDTLVLAP 114 (159)
T ss_dssp CSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEE-EETTEEEEEEEESBEEE-T
T ss_pred CcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEe-eeccccccccccceEEeeC
Confidence 346788984 234899999999999999998774567888888755433 3688653 23456999
Q ss_pred CCEEEEEEe-cC-CcccEEccC
Q psy12112 219 GNTFRYQFT-AN-AGTHFWHAH 238 (246)
Q Consensus 219 Ges~tY~F~-~q-~GT~WYHsH 238 (246)
|++++..++ ++ +|.||.++.
T Consensus 115 G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 115 GQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TEEEEEEEEECSCSSEEEEEEE
T ss_pred CeEEEEEEEeCCCCCeEEEEEe
Confidence 999999999 66 999999994
No 39
>PRK10883 FtsI repressor; Provisional
Probab=97.35 E-value=0.0003 Score=68.95 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=51.9
Q ss_pred EEEcCCC-CCC--eEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCcc-------ccccccCCCCEEEEEEe
Q psy12112 158 LAVNRML-PGP--SIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT 227 (246)
Q Consensus 158 ~tiNGq~-PGP--tI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~-------vTqcpI~PGes~tY~F~ 227 (246)
|+|||+. ... .++++.|...+.+|.|. +.|.||.||..+.... .+|.+- -....| + ++.+..++
T Consensus 363 ~~INg~~~~~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~-~~G~~~~~~~~gwkDTV~v-~-~~v~i~~~ 436 (471)
T PRK10883 363 PGINGALWDMNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRN-VNGAMPFPEDRGWKDTVWV-D-GQVELLVY 436 (471)
T ss_pred CccCCcccCCCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEE-ecCCCCCccccCcCcEEEc-C-CeEEEEEE
Confidence 4799984 322 36899999999999996 3699999998765332 344321 111234 3 45666666
Q ss_pred -cCCc----ccEEccCCCC
Q psy12112 228 -ANAG----THFWHAHTGC 241 (246)
Q Consensus 228 -~q~G----T~WYHsH~~~ 241 (246)
+.+| .|+||||.=-
T Consensus 437 f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 437 FGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred ecCCCCCCCcEEeeccccc
Confidence 5454 7999999643
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.24 E-value=0.0015 Score=50.81 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=44.4
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccc--cccccCCCCEEEEEEecCCcccEEccCC
Q psy12112 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV--TQCPITQGNTFRYQFTANAGTHFWHAHT 239 (246)
Q Consensus 164 ~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~v--TqcpI~PGes~tY~F~~q~GT~WYHsH~ 239 (246)
|-...|+|+.||+|+ ++|... .+|++..+....... ..+..+.+ +...+.||+++++.|.. +|+|.|+|-.
T Consensus 14 F~P~~i~v~~G~~V~--~~N~~~-~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pG~t~~~tF~~-~G~y~y~C~~ 86 (99)
T TIGR02656 14 FEPAKISIAAGDTVE--WVNNKG-GPHNVVFDEDAVPAG-VKELAKSLSHKDLLNSPGESYEVTFST-PGTYTFYCEP 86 (99)
T ss_pred EeCCEEEECCCCEEE--EEECCC-CCceEEECCCCCccc-hhhhcccccccccccCCCCEEEEEeCC-CEEEEEEcCC
Confidence 345679999999864 557654 677777654321110 00000111 22347899999987764 8999999963
No 41
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.23 E-value=0.0013 Score=49.56 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=42.8
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEecCCcccEEccCCC
Q psy12112 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHTG 240 (246)
Q Consensus 164 ~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~~q~GT~WYHsH~~ 240 (246)
|--+.|+++.||+|. +.|... .+|+++...-. ++.-......+.||+++++.| +++|+|-|||=.+
T Consensus 8 F~P~~i~v~~GdtVt--~~N~d~-~~Hnv~~~~g~-------~~~~~~~~~~~~~g~~~~~tf-~~~G~y~y~C~~H 73 (83)
T TIGR02657 8 YETPELHVKVGDTVT--WINREA-MPHNVHFVAGV-------LGEAALKGPMMKKEQAYSLTF-TEAGTYDYHCTPH 73 (83)
T ss_pred EcCCEEEECCCCEEE--EEECCC-CCccEEecCCC-------CccccccccccCCCCEEEEEC-CCCEEEEEEcCCC
Confidence 345779999999975 578755 67888765421 110001111357787777655 6799999999654
No 42
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.16 E-value=0.00059 Score=69.04 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=52.6
Q ss_pred CeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCC--------------CccccccccCCCCEEEEEEe-cCCc
Q psy12112 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAG 231 (246)
Q Consensus 167 PtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DG--------------vp~vTqcpI~PGes~tY~F~-~q~G 231 (246)
-+++++.++.|+|.+.|... .+|.||+||..+....+..| .|......|++|.--..+|+ +++|
T Consensus 433 ~v~~~~~n~~VeiV~qn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG 511 (596)
T PLN00044 433 SIINGTYKGFMEIIFQNNAT-NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAG 511 (596)
T ss_pred eEEEcCCCCEEEEEEeCCCC-CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCE
Confidence 34678889999999999754 68999999976432111111 12223455788888889999 9999
Q ss_pred ccEEccC
Q psy12112 232 THFWHAH 238 (246)
Q Consensus 232 T~WYHsH 238 (246)
-|+.|||
T Consensus 512 ~W~lHCH 518 (596)
T PLN00044 512 IWNLRVE 518 (596)
T ss_pred Eehhhcc
Confidence 9999999
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.81 E-value=0.0021 Score=49.88 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCC-CCCCCCCCccccccccCCCCEEEEEEecCCcccEEccC
Q psy12112 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQR-GTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH 238 (246)
Q Consensus 164 ~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~-~t~~~DGvp~vTqcpI~PGes~tY~F~~q~GT~WYHsH 238 (246)
|--+.|+++.||+|. +.|... .+|++.+=--... +.......+......+.||+++++.|. .+|+|.|+|-
T Consensus 14 F~P~~i~V~~G~tV~--~~n~~~-~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~-~~G~y~y~C~ 85 (99)
T PF00127_consen 14 FDPSEITVKAGDTVT--FVNNDS-MPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT-KPGTYEYYCT 85 (99)
T ss_dssp EESSEEEEETTEEEE--EEEESS-SSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE-SSEEEEEEET
T ss_pred EeCCEEEECCCCEEE--EEECCC-CCceEEEecccccccccccccCccccceecCCCCEEEEEeC-CCeEEEEEcC
Confidence 345789999999865 555433 5677765220000 000000001101234789999888887 8999999994
No 44
>KOG1263|consensus
Probab=96.46 E-value=0.0051 Score=62.09 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=53.5
Q ss_pred eEEEecCCEEEEEEEeCCCC--CCceeEeecccCCCC-----CCCC--C---------CccccccccCCCCEEEEEEe-c
Q psy12112 168 SIQVCEGDRVVVDVRNSMDG--LENTIHWHGIHQRGT-----QYSD--G---------VPFVTQCPITQGNTFRYQFT-A 228 (246)
Q Consensus 168 tI~v~~GD~V~V~V~N~l~~--~~tsIHwHGl~q~~t-----~~~D--G---------vp~vTqcpI~PGes~tY~F~-~ 228 (246)
.++++-++.|+|.+.|.... +.+++|+||...... +|.. . .+.-...-|+||.-...+|. +
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 47899999999999998642 457889999864321 1211 0 11112345899999999999 9
Q ss_pred CCcccEEccCCC
Q psy12112 229 NAGTHFWHAHTG 240 (246)
Q Consensus 229 q~GT~WYHsH~~ 240 (246)
++|.|.+|||.-
T Consensus 511 NPG~W~~HCHie 522 (563)
T KOG1263|consen 511 NPGVWLMHCHIE 522 (563)
T ss_pred CCcEEEEEEecH
Confidence 999999999974
No 45
>PRK02710 plastocyanin; Provisional
Probab=96.29 E-value=0.022 Score=45.91 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=43.7
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEecCCcccEEccCCC
Q psy12112 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHTG 240 (246)
Q Consensus 164 ~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~~q~GT~WYHsH~~ 240 (246)
|--+.|+++.||+|+ ++|... .+|++...|.. +.. .+.-.+.||+++++.|.. +|+|-|+|=.+
T Consensus 44 F~P~~i~v~~Gd~V~--~~N~~~-~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~-~G~y~y~C~~H 107 (119)
T PRK02710 44 FEPSTLTIKAGDTVK--WVNNKL-APHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE-AGTYTYYCEPH 107 (119)
T ss_pred EeCCEEEEcCCCEEE--EEECCC-CCceEEecCCc--------ccc-ccccccCCCCEEEEEecC-CEEEEEEcCCC
Confidence 445789999999854 567654 57777765421 110 111247999999988875 89999999643
No 46
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.99 E-value=0.13 Score=41.89 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEecCCcccEEccCCC
Q psy12112 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHTG 240 (246)
Q Consensus 164 ~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~~q~GT~WYHsH~~ 240 (246)
|-...|.|+.||+|. ++|+....+|++..-+ ... .| .......+|+++++.| +++|+|-|+|=.+
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf-~~~G~Y~Y~C~pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTF-EEPGIYLYVCVPH 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEe-cCCcEEEEEccCC
Confidence 345679999999976 5654332466665310 001 11 0111357899998888 6789999999654
No 47
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=93.60 E-value=0.58 Score=41.72 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=59.2
Q ss_pred EEEEEcCCCCC-CeEEEecCCEEEEEEEeCCCCCCceeEee--cccCC--CCCCCCCCc----c-----ccccccCCCCE
Q psy12112 156 GILAVNRMLPG-PSIQVCEGDRVVVDVRNSMDGLENTIHWH--GIHQR--GTQYSDGVP----F-----VTQCPITQGNT 221 (246)
Q Consensus 156 ~v~tiNGq~PG-PtI~v~~GD~V~V~V~N~l~~~~tsIHwH--Gl~q~--~t~~~DGvp----~-----vTqcpI~PGes 221 (246)
..+-|||.--| ++|.+-.|-+|.|+++|.-. .+|++=.= +..++ ..-..||.. + .+-..|.+|++
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~-l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQES-LPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCC-CCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 47788987555 88999999999999999854 55544321 11111 112245511 1 11235789999
Q ss_pred EEEEEe-cCCcccEEccCCCCCCC
Q psy12112 222 FRYQFT-ANAGTHFWHAHTGCPMS 244 (246)
Q Consensus 222 ~tY~F~-~q~GT~WYHsH~~~Q~~ 244 (246)
..-.|. -++|+||+=|-.-++++
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~ 176 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAE 176 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhh
Confidence 988887 88999999998776654
No 48
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.33 E-value=0.6 Score=41.51 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=56.9
Q ss_pred EEEEcCCCCC-CeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCC-------CCCCCCcc----cc-----ccccCCC
Q psy12112 157 ILAVNRMLPG-PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGT-------QYSDGVPF----VT-----QCPITQG 219 (246)
Q Consensus 157 v~tiNGq~PG-PtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t-------~~~DGvp~----vT-----qcpI~PG 219 (246)
.+-|||...| ++|.+-.|-+|.|++.|... .+|++-. -+..+ ...||... .+ .--|.+|
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~-~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYES-LPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCC-CCccEEE---ecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 4678888666 88999999999999999875 6766543 22222 12455221 11 1235678
Q ss_pred CEEEEEEe-cCCcccEEccCCCCCC
Q psy12112 220 NTFRYQFT-ANAGTHFWHAHTGCPM 243 (246)
Q Consensus 220 es~tY~F~-~q~GT~WYHsH~~~Q~ 243 (246)
++..-.|. -++|+|||=|-.-++.
T Consensus 150 qs~sg~~~~~~~G~YwlvCgipGHA 174 (195)
T TIGR03094 150 HSRSGWWNDTSAGKYWLVCGITGHA 174 (195)
T ss_pred ceeEEEeccCCCeeEEEEcccCChh
Confidence 88666777 8999999999765543
No 49
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=92.75 E-value=0.26 Score=40.15 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCeEEEecCCEEEEEEEeCCCCCCceeEe-ecccCCCCCCCCCCccccccccCCCCEEEEEEecCCcccEEccCCCC
Q psy12112 166 GPSIQVCEGDRVVVDVRNSMDGLENTIHW-HGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHTGC 241 (246)
Q Consensus 166 GPtI~v~~GD~V~V~V~N~l~~~~tsIHw-HGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~~q~GT~WYHsH~~~ 241 (246)
...|.|+.||+|+....|. +|++.+ .+. ..+|...+ .-.+|+++++.| +.+|+|-|+|=.+.
T Consensus 14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~~---~s~~g~~~~~tF-~~~G~Y~Y~C~pH~ 76 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEAF---KSKINEEYTVTV-TEEGVYGVKCTPHY 76 (116)
T ss_pred CCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCcccc---cCCCCCEEEEEe-CCCEEEEEEcCCCc
Confidence 5679999999977766553 355443 121 11232221 124566655555 67899999996543
No 50
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.36 E-value=0.65 Score=37.66 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=43.5
Q ss_pred CCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccC
Q psy12112 166 GPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 238 (246)
Q Consensus 166 GPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH 238 (246)
.+.|.+..|+.|++.+++..- - ||+..+.. | + +.-+.||+.....|. +.+|+|++.|.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--i-----Hsf~ip~~----~---~-k~d~~PG~~~~~~~~~~~~G~y~~~C~ 103 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--I-----HSFWIPEL----G---I-KMDAIPGRTNSVTFTPDKPGTYYGQCA 103 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS--------EEEEETTC----T---E-EEEEBTTCEEEEEEEESSSEEEEEEE-
T ss_pred cceecccccceEeEEEEcCCc--c-----cccccccc----C---c-ccccccccceeeeeeeccCCcEEEcCc
Confidence 467999999999999999642 2 55544421 1 1 124689999999999 99999999996
No 51
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=89.72 E-value=1.2 Score=37.24 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred CCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEecCCcccEEccCCC
Q psy12112 166 GPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHTG 240 (246)
Q Consensus 166 GPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~~q~GT~WYHsH~~ 240 (246)
.-.|+|+.||+ |++.|... ..|+++.=+.- . .+|.-.+ ...+|+++++.| +.+|+|-|.|-.+
T Consensus 53 PA~v~v~pGDT--Vtw~~~d~-~~Hnv~~~~~~---~--~~g~~~~---~~~~~~s~~~Tf-e~~G~Y~Y~C~PH 115 (128)
T COG3794 53 PAEVTVKPGDT--VTWVNTDS-VGHNVTAVGGM---D--PEGSGTL---KAGINESFTHTF-ETPGEYTYYCTPH 115 (128)
T ss_pred CcEEEECCCCE--EEEEECCC-CCceEEEeCCC---C--ccccccc---ccCCCcceEEEe-cccceEEEEeccC
Confidence 35699999999 55677765 57777654432 0 1222221 223345555555 6699999999654
No 52
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=78.65 E-value=9.7 Score=31.82 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.0
Q ss_pred cccCCCCEEEEEEe-c--CCcc-cEEccCCCCCC
Q psy12112 214 CPITQGNTFRYQFT-A--NAGT-HFWHAHTGCPM 243 (246)
Q Consensus 214 cpI~PGes~tY~F~-~--q~GT-~WYHsH~~~Q~ 243 (246)
-.|.||++.+..|. . ++|+ |-|-|-+-+++
T Consensus 83 kliggGes~svtF~~~~l~~g~~Y~f~CSFPGH~ 116 (125)
T TIGR02695 83 KVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHW 116 (125)
T ss_pred cccCCCceEEEEEECCCCCCCCcceEEEcCCCcH
Confidence 45899999999998 4 6886 99999877654
No 53
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=77.85 E-value=3.3 Score=41.82 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=42.6
Q ss_pred CeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEcc
Q psy12112 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA 237 (246)
Q Consensus 167 PtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHs 237 (246)
-.+.|++||+|.+.++|--. ..-.+ ||.-.+ +-|+.. -|.|-++-.|.|. +.+|.+||.|
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~-Ved~t--hgfv~p----~~~v~~----~v~pq~tasvtf~a~kpgv~w~yc 618 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDE-VEDLT--HGFVIP----NYGVNM----EVKPQRTASVTFYADKPGVAWYYC 618 (637)
T ss_pred EEEEEecCcEEEEEecccce-ecccc--ceeeec----cCceEE----EEccCCceEEEEEccCCeeeehhh
Confidence 44788889999998888654 33333 554333 123332 3889999999999 9999999987
No 54
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=69.64 E-value=17 Score=31.75 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=42.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccC
Q psy12112 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 238 (246)
Q Consensus 167 PtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH 238 (246)
..|.+..|+.|++.+++..- | ||...+.. |+ +.-+.||..-+..|. +++|+|...|.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-----~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~~~~G~y~~~c~ 174 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-----I--HSFWVPEL----GG----KIDAIPGQYNALWFNADEPGVYYGYCA 174 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-----h--hccccccc----Cc----eEEecCCcEEEEEEEeCCCEEEEEEeh
Confidence 57999999999999998532 2 66655432 11 123678998888999 99999998885
No 55
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=67.95 E-value=18 Score=28.21 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCCceeEeecccCCCCCCCC-CCccccccccCCCCEEEEEEe-cCCcccEEccCCCC
Q psy12112 178 VVDVRNSMDGLENTIHWHGIHQRGTQYSD-GVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHTGC 241 (246)
Q Consensus 178 ~V~V~N~l~~~~tsIHwHGl~q~~t~~~D-Gvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH~~~ 241 (246)
.|.|+|.|. ....|..|=-.-. .| |+- .|.||+.+.+.|. +-.|+-.|.|++..
T Consensus 2 ~V~I~N~L~-~~~~L~vhC~S~d----~Dlg~~-----~l~~g~~~~~~F~~~~~~~t~f~C~~~~ 57 (110)
T PF05938_consen 2 HVVIINNLG-PGKILTVHCKSKD----DDLGWH-----VLKPGQSYSFSFRDNFFGTTLFWCHFRW 57 (110)
T ss_pred EEEEEECCC-CCCeEEEEeeCCC----ccCCCE-----ECCCCCEEEEEEecCcCCceeEEEEEEE
Confidence 478999995 4444555443211 23 222 4899999999999 76788888898765
No 56
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=56.65 E-value=68 Score=31.32 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=44.6
Q ss_pred cCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccc-cccccCCCCEEEEEEecCCcccEEccCC
Q psy12112 161 NRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV-TQCPITQGNTFRYQFTANAGTHFWHAHT 239 (246)
Q Consensus 161 NGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~v-TqcpI~PGes~tY~F~~q~GT~WYHsH~ 239 (246)
++.+--..+.|..|+ +++.|+|... .++-+-. .+|+--+ -.-.|.||.+..+.++-.+|+|-|+|=+
T Consensus 38 d~~c~p~~~tVpAG~-~~f~V~N~~~-~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L~pGtY~~~C~~ 105 (375)
T PRK10378 38 DKQCEPMTLTVNAGK-TQFIIQNHSQ-KALEWEI----------LKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGL 105 (375)
T ss_pred CCccccCceeeCCCC-EEEEEEeCCC-CcceEEe----------eccccccccccccCCCCceEEEEecCCceEEeecCc
Confidence 456777889999996 9999999875 3322111 0221000 1125999999887665469999999944
No 57
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=42.74 E-value=88 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=42.7
Q ss_pred CCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccC
Q psy12112 166 GPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 238 (246)
Q Consensus 166 GPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH 238 (246)
...|.+..|..|++.++-..- | ||+..+... + +.-+-||...+..++ +++|+|.-.|+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~DV-----i--HsF~IP~l~----~----k~d~iPG~~~~~~~~~~~~G~Y~g~Ca 194 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSADV-----I--HSFWIPQLG----G----KIDAIPGMTTELWLTANKPGTYRGICA 194 (247)
T ss_pred cceEEEeCCCeEEEEEEechh-----c--eeEEecCCC----c----eeeecCCceEEEEEecCCCeEEEEEcH
Confidence 388999999999999987632 2 555544321 0 123678888888889 99999999886
No 58
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=40.10 E-value=1.6e+02 Score=22.25 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=31.4
Q ss_pred EEcCCCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCcc---ccccccCCCCEEEEEEe---cC--C
Q psy12112 159 AVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF---VTQCPITQGNTFRYQFT---AN--A 230 (246)
Q Consensus 159 tiNGq~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~---vTqcpI~PGes~tY~F~---~q--~ 230 (246)
..|-.--.=+|+..-|++..+.|.|... ..-| -|.+|-.. +.+..|+||++.+|++. .. +
T Consensus 8 v~N~s~~~v~l~f~sgq~~D~~v~d~~g----~~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~ 75 (82)
T PF12690_consen 8 VTNNSDEPVTLQFPSGQRYDFVVKDKEG----KEVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSP 75 (82)
T ss_dssp EEE-SSS-EEEEESSS--EEEEEE-TT------EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----S
T ss_pred EEeCCCCeEEEEeCCCCEEEEEEECCCC----CEEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCC
Confidence 3343333334667778888888886533 1112 24455332 23456999999999988 33 7
Q ss_pred cccEE
Q psy12112 231 GTHFW 235 (246)
Q Consensus 231 GT~WY 235 (246)
|+|..
T Consensus 76 G~Y~~ 80 (82)
T PF12690_consen 76 GEYTL 80 (82)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88753
No 59
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=33.89 E-value=2e+02 Score=25.11 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCCCeEEEecCCEEEEEEEeCCCCCCceeEeecccCC-----------CCCCCCCCccccccccCCCCEEEEEEe-cCC
Q psy12112 163 MLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQR-----------GTQYSDGVPFVTQCPITQGNTFRYQFT-ANA 230 (246)
Q Consensus 163 q~PGPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~-----------~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~ 230 (246)
.|++-.+.++.|.+|+..+.|... ..|==.+.++ ..+.+++-- ....-+.||++-+..|. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~e----l~hef~~~~~~~~~~~~~~~~~~~Dme~d~-~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGE----LKHEFTMDAPDKNLEHVTHMILADDMEHDD-PNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCccc----ceEEEeccCccccchhHHHhhhCCccccCC-cceeEeCCCCcEEEEEEecCC
Confidence 367788999999999999999754 1221112111 111223211 11235999999999999 999
Q ss_pred cccEEccCCCCCCC
Q psy12112 231 GTHFWHAHTGCPMS 244 (246)
Q Consensus 231 GT~WYHsH~~~Q~~ 244 (246)
|.|-+-|-..++|.
T Consensus 134 g~ye~~C~iPGHy~ 147 (158)
T COG4454 134 GKYEFACNIPGHYE 147 (158)
T ss_pred ccEEEEecCCCccc
Confidence 99999998877764
No 60
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=33.01 E-value=32 Score=27.75 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCeEEEecCCEEEEEEEeCCC
Q psy12112 157 ILAVNRMLPGPSIQVCEGDRVVVDVRNSMD 186 (246)
Q Consensus 157 v~tiNGq~PGPtI~v~~GD~V~V~V~N~l~ 186 (246)
-..|||+.--|.=.|+.||.|.|++.|..-
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 467899987889999999999999999864
No 61
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=30.34 E-value=91 Score=31.91 Aligned_cols=59 Identities=8% Similarity=-0.048 Sum_probs=45.9
Q ss_pred EEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccC
Q psy12112 169 IQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 238 (246)
Q Consensus 169 I~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH 238 (246)
..+.+++.+++.|+|.. ..+.-.||+.-. .|+.-+ -+.|.......|. +++|.+||-|-
T Consensus 550 staps~~l~ef~Vkq~D---EVt~l~tnld~V----ed~thg----fv~p~~~v~~~v~pq~tasvtf~a~ 609 (637)
T COG4263 550 STAPSFGLTEFKVKQGD---EVTVLTTNLDEV----EDLTHG----FVIPNYGVNMEVKPQRTASVTFYAD 609 (637)
T ss_pred eccCCCceEEEEEecCc---EEEEEeccccee----ccccce----eeeccCceEEEEccCCceEEEEEcc
Confidence 46778999999999964 466667888643 355444 4788888899999 99999999874
No 62
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=30.27 E-value=2.3e+02 Score=21.12 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=34.7
Q ss_pred CCeEEEe---cCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe
Q psy12112 166 GPSIQVC---EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 227 (246)
Q Consensus 166 GPtI~v~---~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~ 227 (246)
.|.+.++ ....|.|+|.|.-. ....+....... ..+.+ .+..|.||++.+..|.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~-~~~~~~v~~~~y-----~~~~~--~~~~v~ag~~~~~~w~ 64 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGS-AAVTFTVYDNAY-----GGGGP--WTYTVAAGQTVSLTWP 64 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCC-CcEEEEEEeCCc-----CCCCC--EEEEECCCCEEEEEEe
Confidence 4555554 23589999999866 566666554211 11222 2346999999999997
No 63
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.97 E-value=64 Score=26.76 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.1
Q ss_pred cccCCCCEEEEEEe-----cCCcccEEccC
Q psy12112 214 CPITQGNTFRYQFT-----ANAGTHFWHAH 238 (246)
Q Consensus 214 cpI~PGes~tY~F~-----~q~GT~WYHsH 238 (246)
.||+||.+.+..+. ...|+|.|++-
T Consensus 97 ~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 97 EPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 38999999999985 34589988874
No 64
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=25.39 E-value=1.4e+02 Score=24.68 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=13.5
Q ss_pred CCCccccccccCCCCEEEEEE
Q psy12112 206 DGVPFVTQCPITQGNTFRYQF 226 (246)
Q Consensus 206 DGvp~vTqcpI~PGes~tY~F 226 (246)
+||-+- |..|.||++|.|.=
T Consensus 67 ~GVVG~-qP~L~PGe~F~Y~S 86 (127)
T PRK05461 67 EGVVGE-QPVLAPGESFEYTS 86 (127)
T ss_pred CceecC-CceECCCCCeEEeC
Confidence 455442 45589999988854
No 65
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=25.26 E-value=66 Score=22.61 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCC----CeEEEecCCEEEEE
Q psy12112 155 RGILAVNRMLPG----PSIQVCEGDRVVVD 180 (246)
Q Consensus 155 r~v~tiNGq~PG----PtI~v~~GD~V~V~ 180 (246)
+-+..+||.+-. +...++.||+|+|-
T Consensus 31 ~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 31 RVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred eEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 445678997655 78889999999873
No 66
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.80 E-value=55 Score=25.01 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.3
Q ss_pred eEEEEEEEcCCCCCCeEEEecCCEEEEE
Q psy12112 153 VERGILAVNRMLPGPSIQVCEGDRVVVD 180 (246)
Q Consensus 153 ~~r~v~tiNGq~PGPtI~v~~GD~V~V~ 180 (246)
.+..++.+||..-++.=+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4677899999988888999999999874
No 67
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=23.39 E-value=3.7e+02 Score=21.54 Aligned_cols=16 Identities=31% Similarity=0.928 Sum_probs=14.3
Q ss_pred cccccCCCCEEEEEEe
Q psy12112 212 TQCPITQGNTFRYQFT 227 (246)
Q Consensus 212 TqcpI~PGes~tY~F~ 227 (246)
..|||.+|+.++|.+.
T Consensus 75 ~~CPl~~G~~~~y~~~ 90 (123)
T cd00916 75 TSCPLSAGEDVTYTLS 90 (123)
T ss_pred CCCCCcCCcEEEEEEe
Confidence 5799999999999885
No 68
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=22.87 E-value=41 Score=26.51 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=7.0
Q ss_pred cEEccCCCC
Q psy12112 233 HFWHAHTGC 241 (246)
Q Consensus 233 ~WYHsH~~~ 241 (246)
=|||+|...
T Consensus 69 G~YHSHP~~ 77 (119)
T cd08058 69 GWYHSHPTF 77 (119)
T ss_pred EEEecCCCC
Confidence 399999843
No 69
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=22.80 E-value=69 Score=22.65 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEcCCCCCCe----EEEecCCEEEE
Q psy12112 157 ILAVNRMLPGPS----IQVCEGDRVVV 179 (246)
Q Consensus 157 v~tiNGq~PGPt----I~v~~GD~V~V 179 (246)
+..+||.+-.+. ..++.||+|.|
T Consensus 32 ~V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 32 AVALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEE
Confidence 567999976655 88999999887
No 70
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=22.75 E-value=3.1e+02 Score=22.23 Aligned_cols=22 Identities=32% Similarity=0.964 Sum_probs=16.4
Q ss_pred CCCCccccccccCCCCEEEEEEe
Q psy12112 205 SDGVPFVTQCPITQGNTFRYQFT 227 (246)
Q Consensus 205 ~DGvp~vTqcpI~PGes~tY~F~ 227 (246)
.||=-. ..|||.+|+.++|.+.
T Consensus 65 ~daC~~-l~CPl~~G~~~~y~~~ 86 (120)
T cd00918 65 TDGCKY-VKCPIKKGQHYDIKYT 86 (120)
T ss_pred CCCccc-EeCCCcCCcEEEEEEe
Confidence 455322 3799999999999885
No 71
>KOG4387|consensus
Probab=22.54 E-value=34 Score=30.48 Aligned_cols=29 Identities=14% Similarity=0.530 Sum_probs=24.0
Q ss_pred EEEecCCEEEEEEEeCCCCCCceeEeeccc
Q psy12112 169 IQVCEGDRVVVDVRNSMDGLENTIHWHGIH 198 (246)
Q Consensus 169 I~v~~GD~V~V~V~N~l~~~~tsIHwHGl~ 198 (246)
....-++.+.+++.|++. ...++||||+-
T Consensus 71 ~~~n~~~~~~~d~~~rlt-~~~s~~W~~vl 99 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLT-VAKSMNWHGVL 99 (191)
T ss_pred ccccCCCCcEEeccchhh-eeeecccceEE
Confidence 344567889999999998 78999999974
No 72
>PRK07440 hypothetical protein; Provisional
Probab=21.84 E-value=77 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCC----CeEEEecCCEEEEE
Q psy12112 155 RGILAVNRMLPG----PSIQVCEGDRVVVD 180 (246)
Q Consensus 155 r~v~tiNGq~PG----PtI~v~~GD~V~V~ 180 (246)
.-+..+||.+-- +...++.||+|+|-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 447889998766 88999999999873
No 73
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.46 E-value=3.3e+02 Score=24.30 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCeEEEecCCEEEEEEEeCCCCCCceeEeecccCCCCCCCCCCccccccccCCCCEEEEEEe-cCCcccEEccC
Q psy12112 166 GPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH 238 (246)
Q Consensus 166 GPtI~v~~GD~V~V~V~N~l~~~~tsIHwHGl~q~~t~~~DGvp~vTqcpI~PGes~tY~F~-~q~GT~WYHsH 238 (246)
...|.+..|..|++.+++.. .| |+...+.. |+- + -+-||..-...|. +++|+|+-.|.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-----Vi--Hsf~ip~~----~~k---~-d~~Pg~~~~~~~~~~~~g~y~~~C~ 197 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-----VI--HSWTVPSL----GVK---V-DAIPGRLNQLSFEPKRPGVFYGQCS 197 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-----cc--cceecccc----Cce---e-ECCCCcceeEEEEeCCCEEEEEECc
Confidence 35689999999999999953 22 55544421 111 1 2457787777888 88888877664
Done!