RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12112
(246 letters)
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 128 bits (324), Expect = 6e-38
Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 5/96 (5%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT-IHWHGIHQRGTQYSD 206
V G R ++ VN PGP+I+V EGD VVV+V N++D E T IHWHG+ Q GT ++D
Sbjct: 7 VTPLGGTRQVIGVNGQFPGPTIRVREGDTVVVNVTNNLD--EPTTIHWHGLRQPGTPWAD 64
Query: 207 GVPFVTQCPITQGNTFRYQFTAN--AGTHFWHAHTG 240
GVP VTQCPI G +F Y+FT AGT+++H+HT
Sbjct: 65 GVPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSHTS 100
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 105 bits (263), Expect = 7e-26
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
D E+ ++ +N PGP+I+ GD +VV++ N + IHWHGI Q GT ++DG
Sbjct: 16 DCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG 75
Query: 211 VTQCPITQGNTFRYQFTA-NAGTHFWHAHTG 240
VTQC I G TF Y F GT+F+H H G
Sbjct: 76 VTQCAINPGETFIYNFVVDRPGTYFYHGHYG 106
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 94.7 bits (235), Expect = 3e-22
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
D E ++ VN PGP+I GD +VV + N + IHWHGI Q+G+ ++DG
Sbjct: 38 DCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG 97
Query: 211 VTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
VTQC I G TF Y+FT GTHF+H H G
Sbjct: 98 VTQCAINPGETFTYKFTVEKPGTHFYHGHYG 128
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 94.4 bits (235), Expect = 3e-22
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 155 RGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQ 213
+ IL VN PGP++ EGD V+V+V N++ N TIHWHG+ Q ++DG ++TQ
Sbjct: 22 KSILTVNGKFPGPTLYAREGDTVIVNVTNNVQ--YNVTIHWHGVRQLRNGWADGPAYITQ 79
Query: 214 CPITQGNTFRYQFT--ANAGTHFWHAH 238
CPI G ++ Y FT GT +WHAH
Sbjct: 80 CPIQPGQSYVYNFTITGQRGTLWWHAH 106
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 93.0 bits (231), Expect = 1e-21
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
D ++ ++ +N PGP+I +GD V+V+++NS+ IHWHGI Q GT + DG
Sbjct: 39 DCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG 98
Query: 211 VTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
VTQCPI G TF Y+F + GT+ +HAH G
Sbjct: 99 VTQCPILPGETFTYEFVVDRPGTYLYHAHYG 129
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 76.0 bits (187), Expect = 7e-16
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 153 VERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT 212
R + VN PGP I++ EG + V N + T+HWHG+ QR +SDG P +
Sbjct: 25 SSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLAS 84
Query: 213 QCPITQGNTFRYQFT---ANAGTHFWHAHTG 240
Q PI G+ F Y+ +AG++F+H+H G
Sbjct: 85 QWPIPPGHFFDYEIKPEPGDAGSYFYHSHVG 115
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 75.2 bits (185), Expect = 1e-15
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 145 CQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT-IHWHGIHQRGTQ 203
Q A G + N LPGP+I+V +GD V +D+ N + L +T +HWHG+ G
Sbjct: 42 AQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRL--LVDTSVHWHGLPVPGEM 99
Query: 204 YSDGVPFVTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
DGVP +TQ P G T Y FT + GT+++H HT
Sbjct: 100 --DGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTH 135
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 69.1 bits (169), Expect = 1e-13
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
G R + VN +PGP ++ EGD V + V N++ + +IHWHGI DGVP
Sbjct: 60 TGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP-EDTSIHWHGILLPFQM--DGVPG 116
Query: 211 VTQCPITQGNTFRYQFTA-NAGTHFWHAHTG 240
V+ I G TF Y+F +GT+++H+H+G
Sbjct: 117 VSFAGIAPGETFTYRFPVRQSGTYWYHSHSG 147
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 60.2 bits (146), Expect = 2e-10
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 152 GVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV 211
GV + ++ +N PGP+I + +V++V N++D + W GI QR + DGVP
Sbjct: 43 GVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG- 100
Query: 212 TQCPITQGNTFRYQFTA--NAGTHFWHAHTG 240
T CPI G F Y F G++F++ TG
Sbjct: 101 TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTG 131
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 57.7 bits (139), Expect = 1e-09
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 154 ERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQ 213
RGIL +N PGP I+ D +V++V N +D + W+G+H R Y DGV + T
Sbjct: 35 RRGIL-INGQFPGPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGV-YGTT 91
Query: 214 CPITQGNTFRYQFTA--NAGTHFW 235
CPI G + Y F G++F+
Sbjct: 92 CPIPPGKNYTYDFQVKDQVGSYFY 115
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 53.5 bits (128), Expect = 3e-08
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
L ++ + +N PGP++ V +VV+VRN++D + WHG+ QR + + DGV
Sbjct: 42 LGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGV 100
Query: 209 PFVTQCPITQGNTFRYQFTA--NAGTHFWHAHT 239
T C I G + YQF G+ F+ T
Sbjct: 101 -GGTNCAIPAGWNWTYQFQVKDQVGSFFYAPST 132
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 52.3 bits (126), Expect = 6e-08
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 160 VNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQG 219
N L GP++++ G V VD+ N + E T+HWHG+ G DG P Q I G
Sbjct: 70 YNGNLLGPAVRLQRGKAVTVDITNQLPE-ETTLHWHGLEVPGEV--DGGP---QGIIAPG 123
Query: 220 NTFRYQFTAN--AGTHFWHAHT 239
FT + A T ++H H
Sbjct: 124 GKRTVTFTVDQPAATCWFHPHQ 145
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 50.4 bits (120), Expect = 3e-07
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 152 GVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV 211
GV + ++ +N PGP + V D +++++ N +D + W+GI QR + DGV
Sbjct: 45 GVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGV-LG 102
Query: 212 TQCPITQGNTFRYQF 226
T CPI + + Y+F
Sbjct: 103 TNCPIPPNSNYTYKF 117
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 45.7 bits (108), Expect = 1e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 152 GVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV 211
G + ++ +N M PGP + D + V++ N++ + W+G+ R + DGV
Sbjct: 42 GGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVR-G 99
Query: 212 TQCPITQGN--TFRYQFTANAGTHFW 235
T CPI G T+R+Q G++F+
Sbjct: 100 TNCPILPGTNWTYRFQVKDQIGSYFY 125
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 44.6 bits (105), Expect = 3e-05
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 154 ERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQ 213
++GIL +N PGP I D ++++V N +D I W GI Y DGV + T
Sbjct: 47 QQGIL-INGKFPGPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGV-YGTT 103
Query: 214 CPITQGNTFRY 224
CPI G + Y
Sbjct: 104 CPIPPGKNYTY 114
>gnl|CDD|193572 cd09848, M28_TfR, M28 Zn-peptidase Transferrin Receptor family.
Peptidase M28 family; Transferrin Receptor (TfR)
subfamily. TfRs are homodimeric type II transmembrane
proteins containing three distinct domains:
protease-like, apical or protease-associated (PA), and
helical domains. The protease-like domain is a large
extracellular portion (ectodomain). In TfR, it contains
a binding site for the transferrin molecule and has 28%
identity to membrane glutamate carboxypeptidase II
(mGCP-II or PSMA). The PA domain is inserted between
the first and second strands of the central beta sheet
in the protease-like domain. TfR1 is widely expressed,
and is a key player in the uptake of iron-loaded
transferrin (Tf) into cells. The TfR1 homodimer binds
two molecules of Tf and the complex is then
internalized. TfR1 may also participate in cell growth
and proliferation. TfR2 binds Tf but with a
significantly lower affinity than TfR1. It is expressed
chiefly in hepatocytes, hematopoietic cells, and
duodenal crypt cells; its expression overlaps with that
of hereditary hemochromatosis protein (HFE). TfR2 is
involved in iron homeostasis; in humans, mutations in
TfR2 are associated with a form of hemochromatosis
(HFE3). While related in sequence to peptidase M28
glutamate carboxypeptidase II (also called
prostate-specific membrane antigen or PSMA), TfR lacks
the metal ion coordination centers and protease activity
of that group.
Length = 285
Score = 32.0 bits (73), Expect = 0.21
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 3 LHKVTSETVSETSLDQSTAASWWASASLKPAFPDVAGDPFFAAPDPLAPAPQISETLNPS 62
+ +V S S S + T +SWWAS ++P D A PF A + P + S
Sbjct: 179 MKQVKSPVHSGQSYYEFTRSSWWASI-VEPLGLDNAAYPFLA----FSGIPSV------S 227
Query: 63 FG-SSSNPTYPDLGYTSLD 80
F + + YP LG T LD
Sbjct: 228 FHFTEDDEDYPYLG-TKLD 245
>gnl|CDD|222657 pfam14295, PAN_4, PAN domain.
Length = 48
Score = 25.7 bits (57), Expect = 4.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 81 FDTRGLDVLRGNAELSSPEECARACRE 107
D G D+ G + SPE C AC
Sbjct: 1 TDYPGGDLRSGPVSVDSPEACCAACAA 27
>gnl|CDD|145817 pfam02864, STAT_bind, STAT protein, DNA binding domain. STAT
proteins (Signal Transducers and Activators of
Transcription) are a family of transcription factors
that are specifically activated to regulate gene
transcription when cells encounter cytokines and growth
factors. This family represents the DNA binding domain
of STAT, which has an ig-like fold. STAT proteins also
include an SH2 domain pfam00017.
Length = 254
Score = 27.4 bits (61), Expect = 5.7
Identities = 22/93 (23%), Positives = 28/93 (30%), Gaps = 14/93 (15%)
Query: 25 WASASLKPAFP-DVAGDPFFAAPDPLAPAPQISETLNPSFGSSSNPTYPDLGYTSLDFDT 83
WAS A D FF P Q+SE L+ F S G
Sbjct: 154 WASILWYNALTEDPRNLVFFLVPPR-VTWAQLSEVLSWQFSS-----EVGRGLNIEQLGF 207
Query: 84 RGLDVLRGNAELSSPEEC----ARACREGEPPK 112
+ N SS ++ C+E P K
Sbjct: 208 LAEKLFGQN---SSYSGGSISWSQFCKENLPGK 237
>gnl|CDD|238998 cd02043, plant_SERPIN, SERine Proteinase INhibitors (serpins),
plant specific subgroup. It has been suggested that
plant serpins play a role in defense against insect
predators. This subgroup corresponds to clade P of the
serpin superfamily. In general, serpins exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 381
Score = 27.4 bits (61), Expect = 6.8
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 2 NLHKVTSETVSETSLDQST--------AASWW--ASASLKPAFPDVAGDPFFAAPDPLAP 51
LH V + V D S A W S SLKP+F D+A + + A P+
Sbjct: 61 ELHAVAASIVDLVLADASASGGPRLSFANGVWVDKSLSLKPSFKDLAANSYKAEARPVDF 120
Query: 52 APQISE 57
+ E
Sbjct: 121 RTKAEE 126
>gnl|CDD|185727 cd08986, GH43_7, Glycosyl hydrolase family 43. This glycosyl
hydrolase family 43 (GH43) includes enzymes with
beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC
3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-),
alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase
(EC 3.2.1.99), xylanase (EC 3.2.1.8),
endo-alpha-L-arabinanase and galactan
1,3-beta-galactosidase (EC 3.2.1.145) activities. These
are inverting enzymes (i.e. they invert the
stereochemistry of the anomeric carbon atom of the
substrate) that have an aspartate as the catalytic
general base, a glutamate as the catalytic general acid
and another aspartate that is responsible for pKa
modulation and orienting the catalytic acid. Many of the
enzymes in this family display both
alpha-L-arabinofuranosidase and beta-D-xylosidase
activity using aryl-glycosides as substrates. A common
structural feature of GH43 enzymes is a 5-bladed
beta-propeller domain that contains the catalytic acid
and catalytic base. A long V-shaped groove, partially
enclosed at one end, forms a single extended
substrate-binding surface across the face of the
propeller.
Length = 269
Score = 27.4 bits (61), Expect = 7.3
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 15 SLDQSTAASWWA------SASLKPAFPDVAGDPFFAAPDPLAPAPQI 55
SL + + A LK +AGDP P P +I
Sbjct: 135 SLFEDDDGKVYLVWHNTLIARLKDDLSGLAGDPVRIDPSPTFYKDEI 181
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 27.5 bits (60), Expect = 9.4
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 32 PAFPD----VAGDPFFAAPDPLAPAPQISETLNPSFGSSSNPTYPDLG 75
P PD V DP PDP+ P P E ++P +PT PD+G
Sbjct: 581 PVDPDPVDPVIPDPVI--PDPVDPDPVDPEPVDPVI---PDPTIPDIG 623
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.430
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,038,909
Number of extensions: 1085101
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 28
Length of query: 246
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 152
Effective length of database: 6,768,326
Effective search space: 1028785552
Effective search space used: 1028785552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)