RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12112
(246 letters)
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 166 bits (422), Expect = 3e-48
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 77 TSLDFDTRGLDVLRGNAELSSPEECARACREGEPPKLCYYHFTLEL--YTVLGAACQLC- 133
T+L + + L+ + +C + C+ ++++ Y V
Sbjct: 11 TALFAQASASAIPAVRSTLTPRQNTTASCANSATSRSCWGEYSIDTNWYDVTPTGVTREY 70
Query: 134 TPNATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIH 193
+ N+ + DG R + N +PGP+I GD +++ V N+++ +IH
Sbjct: 71 WLSVENSTIT------PDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIH 124
Query: 194 WHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
WHGI Q G+ DGVP VTQCPI G+T Y+F GT ++H+H
Sbjct: 125 WHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFS 172
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 160 bits (407), Expect = 3e-46
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
+ E ++ +N PGP+I+ GD VVV++ N + IHWHGI QRGT ++DG
Sbjct: 18 NCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTAS 77
Query: 211 VTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
++QC I G TF Y FT + GT F+H H G
Sbjct: 78 ISQCAINPGETFFYNFTVDNPGTFFYHGHLG 108
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 151 bits (383), Expect = 1e-44
Identities = 43/107 (40%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 136 NATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT-IHW 194
+ +T L + A N +P P I V EGD V V+V N IHW
Sbjct: 8 SIEDTRIV-----LVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTT--LPHTIHW 60
Query: 195 HGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
HG+ QRGT SDGVP TQ I G+TF Y+F A AGT ++H H
Sbjct: 61 HGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVN 107
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 150 bits (380), Expect = 5e-44
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 136 NATNTVWSHCQCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENT-IHW 194
+A G++ + N +PGP I V EGD V+V+V N+ IHW
Sbjct: 9 TIEEVTIK-----VAPGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTS--LPHTIHW 61
Query: 195 HGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
HG+HQ+GT SDGVP VTQ PI G+++ Y+F A+ GT ++H H
Sbjct: 62 HGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVN 108
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 151 bits (383), Expect = 3e-43
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 146 QCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRG 201
++ DG R + PGP I GD + N + L +T IHWHG Q+G
Sbjct: 14 ADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKG 73
Query: 202 TQYSDGVPFVTQCPITQGNTFRYQFTA--NAGTHFWHAHTG 240
T ++DG F+TQCPI GN+F Y F AGT+++H+H
Sbjct: 74 TNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLT 114
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 150 bits (382), Expect = 5e-43
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 146 QCVLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRG 201
V DG R + VN + PGP + GDR ++V +++ L++T IHWHG Q G
Sbjct: 13 AAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHG 72
Query: 202 TQYSDGVPFVTQCPITQGNTFRYQFTAN--AGTHFWHAHTG 240
T ++DG F+ QCPI+ G++F Y F AGT ++H+H
Sbjct: 73 TNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLS 113
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 147 bits (374), Expect = 2e-41
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 101 CARACREGEPPKLCYYHFTLELYTVLGAACQLCTPNATNTVWSHCQCVLADGV-ERGILA 159
RAC Y E+ T Q N T + DGV + ++
Sbjct: 8 SNRACWSDGFDINTDY----EVSTPDTGVTQSYVFNLTEVD----NWMGPDGVVKEKVML 59
Query: 160 VNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPIT-Q 218
+N + GP+I GD V V V N++ +IHWHGI Q+ T DG VT+CPI +
Sbjct: 60 INGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPK 119
Query: 219 GNTFRYQFTAN-AGTHFWHAHTG 240
G Y++ A GT ++H+H
Sbjct: 120 GGQRTYRWRARQYGTSWYHSHFS 142
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 146 bits (371), Expect = 3e-41
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 151 DGVE-RGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP 209
DG++ R ++ N P P I V +GDRV + + N M+ ++H+HG+ Q GT DGVP
Sbjct: 17 DGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVP 76
Query: 210 FVTQCPITQGNTFRYQFTAN--AGTHFWHAHTG 240
F+TQCPI G+T Y FT + GT+++H+HT
Sbjct: 77 FLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTD 109
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 143 bits (363), Expect = 4e-40
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 151 DGV-ERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYS 205
DG R + P I DR ++V + + T IHWHG Q GT
Sbjct: 38 DGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEM 97
Query: 206 DGVPFVTQCPITQGNTFRYQFTAN--AGTHFWHAHTG 240
DG FV QCPI +F Y F AGT+++H+H
Sbjct: 98 DGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLS 134
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 142 bits (359), Expect = 1e-39
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSD 206
DG R + VN + GP I+ + D ++V N +D L T IHWHG+ QRGT ++D
Sbjct: 19 DGFTRAGILVNGV-HGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWAD 77
Query: 207 GVPFVTQCPITQGNTFRYQFTA--NAGTHFWHAHTG 240
G V QCPI+ G+ F Y+FT +AGT ++H+H G
Sbjct: 78 GADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFG 113
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 103 bits (258), Expect = 1e-26
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
+A G+ + N +PGP++ EGD + + N+ +TIH+HG+H+ DG
Sbjct: 48 IAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGA-HPHTIHFHGVHRATM---DGT 103
Query: 209 PFVTQCPITQGNTFRYQFTAN-AGTHFWHAHT 239
P + I G +F Y+F A GTH +H H
Sbjct: 104 PGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQ 135
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 94.9 bits (236), Expect = 1e-22
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
G +L PGP+++V D V + + N + +HWHG+ D
Sbjct: 31 AGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLP-EPTNLHWHGLPISPK--VDDP-- 85
Query: 211 VTQCPITQGNTFRYQFTAN---AGTHFWHAHT 239
I G ++ Y+FT AGT ++H H
Sbjct: 86 --FLEIPPGESWTYEFTVPKELAGTFWYHPHL 115
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 91.9 bits (228), Expect = 1e-21
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
L G + N ++P P I+V EGD++ + V+N + TIHWHG+ DG
Sbjct: 64 LIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLK-EATTIHWHGVPVPPD--QDGS 120
Query: 209 PFVTQCPITQGNTFRYQFTAN---AGTHFWHAHT 239
P PI G Y+F AGT+++H H
Sbjct: 121 P---HDPILAGEERIYRFEIPQDSAGTYWYHPHP 151
Score = 28.0 bits (62), Expect = 3.4
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 20/86 (23%)
Query: 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQY------SDGVPFVTQCP----- 215
+ G V N H H GTQ+ +G +
Sbjct: 385 IDLSSKLGVVEDWIVINKSH------MDHPFHIHGTQFELISSKLNGKVQKAEFRALRDT 438
Query: 216 --ITQGNTFRYQFTA-NAGTHFWHAH 238
+ R + G +H H
Sbjct: 439 INVRPNEELRLRMKQDFKGLRMYHCH 464
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 91.2 bits (226), Expect = 2e-21
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 151 DGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF 210
G N L GP++++ G V VD+ N + E T+HWHG+ G DG P
Sbjct: 32 GGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLT-EETTLHWHGLEVPGE--VDGGP- 87
Query: 211 VTQCPITQGNTFRYQFTAN--AGTHFWHAHTGCPMSE 245
Q I G + A T ++H H
Sbjct: 88 --QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGR 122
Score = 28.8 bits (64), Expect = 1.8
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 165 PGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCP-----ITQG 219
P +G + D + + H HG R + P + +G
Sbjct: 390 NKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEG 449
Query: 220 NTFRY--QFTANAGTHF---WHAH 238
N +F +A H H
Sbjct: 450 NVSEVLVKFNHDAPKEHAYMAHCH 473
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 88.4 bits (219), Expect = 2e-20
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 146 QCVLADGVERGILAVNRM-LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQY 204
A +E + P+I + G RV + ++N + +HWHG
Sbjct: 16 LIKEATYIEATASGYMAEGVLNPTIILRRGQRVDMTLKNKLT-EPTIVHWHGFDVNWH-- 72
Query: 205 SDGVPFVTQCPITQGNTFRYQFTAN--AGTHFWHAHT 239
+D P IT G ++ Y F AGT+ +H H
Sbjct: 73 NDAHP---SFAITPGESYNYSFDVVNRAGTYLYHPHP 106
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 87.7 bits (217), Expect = 4e-20
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG 207
V D ++ + M PGP+ QV G VV N+ + N++H HG R DG
Sbjct: 50 VYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAE-APNSVHLHGSFSRAA--FDG 106
Query: 208 VPFVTQCPITQGNTFRYQFTAN--AGTHFWHAHT 239
+ G+ Y + A T ++H H
Sbjct: 107 WA---EDITEPGSFKDYYYPNRQSARTLWYHDHA 137
Score = 30.3 bits (68), Expect = 0.52
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQG------- 219
V G ++ N+ +G + IH H + + + G T P G
Sbjct: 375 LLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWL 434
Query: 220 -----NTFRYQFTANAGTHFWHAH 238
+ G + +H H
Sbjct: 435 GRRETVVVEAHYAPFPGVYMFHCH 458
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 84.3 bits (208), Expect = 1e-19
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG 207
+ + G +PGP I+V EGD + ++ N+MD + ++H HG+ + SDG
Sbjct: 17 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYEIS--SDG 73
Query: 208 VPFVTQCPITQGNTFRYQFTA--------------NAGTHFWHAHTG 240
+ + + G T Y + +AG +H H
Sbjct: 74 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV 119
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 84.8 bits (209), Expect = 2e-19
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG 207
+ + G +PGP I+V EGD + ++ N+MD + ++H HG+ + SDG
Sbjct: 58 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYEIS--SDG 114
Query: 208 VPFVTQCPITQGNTFRYQFTAN--------------AGTHFWHAHTG 240
+ + + G T Y + + AG +H H
Sbjct: 115 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV 160
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 81.5 bits (201), Expect = 6e-18
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDG 207
+ADGVE + +PG I+V EGD + ++ N I H +
Sbjct: 42 IADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT-------GP 94
Query: 208 VPFVTQCPITQGNTFRYQFTAN-AGTHFWHAHTGCPMSE 245
G+T + F A G + +H T P+
Sbjct: 95 GGGAESSFTAPGHTSTFNFKALNPGLYIYHCATA-PVGM 132
Score = 34.9 bits (80), Expect = 0.020
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 169 IQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG----VPFVTQCPITQGNTFRY 224
+ G+ V + + N L ++ H G Y +G V I G
Sbjct: 206 LTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLIPAGGAAIV 264
Query: 225 QFTA-NAGTHFWHAH 238
+F GT H
Sbjct: 265 EFKVEVPGTFILVDH 279
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 78.4 bits (193), Expect = 4e-17
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
+ DGVE + +PG I+V EGD V V+ N+ + H +
Sbjct: 52 MDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPS----STVPHNVDFHAAT--GQG 105
Query: 209 PFVTQCPITQGNTFRYQFTAN-AGTHFWHAHTG 240
G T + F A G + +H
Sbjct: 106 GGAAATFTAPGRTSTFSFKALQPGLYIYHCAVA 138
Score = 28.7 bits (64), Expect = 1.8
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 169 IQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRY 224
++ G+ V + V N L ++ H G Y +G V + G +
Sbjct: 216 LKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAIV 274
Query: 225 QFTA-NAGTHFWHAH 238
+F G + H
Sbjct: 275 EFKVDIPGNYTLVDH 289
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 78.9 bits (194), Expect = 5e-17
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
G + +N GP+I+V +GD V + N + ++ G+ G G
Sbjct: 32 FTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTE-NVSMTVAGLQVPGPL--MGG 88
Query: 209 PFVTQCPITQGNTFRYQFTAN--AGTHFWHAHT 239
P ++ + A T ++HA+T
Sbjct: 89 P---ARMMSPNADWAPVLPIRQNAATLWYHANT 118
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 78.1 bits (191), Expect = 1e-16
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 155 RGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVPF 210
R + + GP + GD +++ +N I+ HGI + GV
Sbjct: 440 REAIQHESGILGPLLYGEVGDTLLIIFKNQAS-RPYNIYPHGITDVRPLYSRRLPKGVKH 498
Query: 211 VTQCPITQGNTFRYQFTA-----------NAGTHFWHAHT 239
+ PI G F+Y++T T ++ +
Sbjct: 499 LKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFV 538
Score = 72.4 bits (176), Expect = 8e-15
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVPFVTQC--PIT 217
L GP+IQ D VV+ ++N ++H G+ G +Y D + +
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMAS-HPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVF 130
Query: 218 QGNTFRYQFTA-----------NAGTHFWHAHTG 240
G + Y + T+ + +H
Sbjct: 131 PGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVD 164
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 76.8 bits (189), Expect = 2e-16
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDG 207
L D N +PGP ++V GD V + ++N D + +++ +HG G
Sbjct: 177 LDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGG 231
Query: 208 VPFVTQCPITQGNTFRYQFTAN-AGTHFWHAHT 239
TQ G F A G + +H T
Sbjct: 232 AAAFTQ--TDPGEETVVTFKALIPGIYVYHCAT 262
Score = 50.7 bits (121), Expect = 1e-07
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 13/87 (14%)
Query: 153 VERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT 212
V G+ P++ V EG+ V V++ N H + D +
Sbjct: 41 VYIGVGGDIDHKINPTLVVHEGETVQVNLVN------GEGAQHDVV------VDQYAARS 88
Query: 213 QCPITQGNTFRYQFTA-NAGTHFWHAH 238
+ + + F A G ++
Sbjct: 89 AIVNGKNASSTFSFVASKVGEFNYYCS 115
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 72.6 bits (178), Expect = 4e-15
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG 207
+ +G E + N +PGP + V E D V + + N + H I
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINP----DTNTLLHNIDFHAAT--GA 105
Query: 208 VPFVTQCPITQGNTFRYQFTA-NAGTHFWHAHTGCPM 243
+ + G +F A G +H M
Sbjct: 106 LGGGALTQVNPGEETTLRFKATKPGVFVYHCAPE-GM 141
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 71.7 bits (175), Expect = 6e-15
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVP--FVTQCPIT 217
L GP++ GD + V +N +IH GI G YSD +
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVA 115
Query: 218 QGNTFRYQFTA-----------NAGTHFWHAHTGCP 242
G + Y++ TH ++++
Sbjct: 116 PGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLV 151
Score = 35.1 bits (80), Expect = 0.014
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 167 PSIQVCEGDRVVVDVRNSMDGLE-NTIHWHG-IHQRGTQYSDGVPFVTQCPITQGNTFRY 224
P I VC D + + G E +IH++G + ++ + + +
Sbjct: 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAI------TLVSATSTTA 268
Query: 225 QFTA-NAGTHFWHAH 238
T G +
Sbjct: 269 NMTVSPEGRWTIASL 283
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 71.8 bits (176), Expect = 7e-15
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 149 LADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
L + + + +PGP + V EGD V + + N + H I +
Sbjct: 46 LDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPE----NTMPHNIDFHAAT--GAL 99
Query: 209 PFVTQCPITQGNTFRYQFTA-NAGTHFWHAHTGCPM 243
I G +F A AG +H G PM
Sbjct: 100 GGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPM 135
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 72.3 bits (176), Expect = 1e-14
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--------VTQCP 215
GP I+ GD+V V ++N T H HGI +G +
Sbjct: 92 FLGPIIKAETGDKVYVHLKNLAS-RPYTFHSHGITYYKE--HEGAIYPDNTTDFQRADDK 148
Query: 216 ITQGNTFRYQFTA-----------NAGTHFWHAHTG 240
+ G + Y A N T +H+H
Sbjct: 149 VYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHID 184
Score = 68.1 bits (165), Expect = 3e-13
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 21/103 (20%)
Query: 152 GVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV 211
VER + + GP + GD+V + +N +IH HG+
Sbjct: 795 PVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT-RPYSIHAHGVQ---------TESS 844
Query: 212 TQCPITQGNTFRYQFTA-----------NAGTHFWHAHTGCPM 243
T P G T Y + +++
Sbjct: 845 TVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVK 887
Score = 56.9 bits (136), Expect = 2e-09
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 22/100 (22%)
Query: 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIH----------QRGTQYSDGVPFVTQ 213
+ GP I GD + V N +I G+ +
Sbjct: 448 ILGPVIWAEVGDTIRVTFHNKGA-YPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSA 506
Query: 214 CPITQGNTFRYQFTA-----------NAGTHFWHAHTGCP 242
+ TF Y++T +++
Sbjct: 507 SHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPT 546
Score = 37.2 bits (85), Expect = 0.004
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 169 IQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 228
+ +C+GD VV + + N HGI+ G Y + +
Sbjct: 634 LTMCKGDSVVWYLFS----AGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWP 689
Query: 229 -NAGTHFWHAHTGCPMS 244
GT T +
Sbjct: 690 DTEGTFNVECLTTDHYT 706
Score = 33.4 bits (75), Expect = 0.062
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 167 PSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 226
+ +C DRV + + N + H G ++ + + F
Sbjct: 271 SGLSMCAEDRVKWYLFG----MGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYM 326
Query: 227 TA-NAGTHFWHAH 238
A N G
Sbjct: 327 VAQNPGEWMLSCQ 339
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 68.6 bits (168), Expect = 1e-13
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 165 PGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRY 224
PGP++ V EGD V + + N H + G + + G
Sbjct: 63 PGPTLVVHEGDYVQLTLVNPAT----NAMPHNVDFHGAT--GALGGAKLTNVNPGEQATL 116
Query: 225 QFTA-NAGTHFWHAHTGCPM 243
+F A +GT +H M
Sbjct: 117 RFKADRSGTFVYHCAPE-GM 135
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 69.0 bits (168), Expect = 1e-13
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 30/120 (25%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDG-------------------- 187
+ D + N + PGP+I+V + V V N++
Sbjct: 39 LHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEP 98
Query: 188 -LENTIHWHGIHQRGTQYSDGVP--FVTQCPITQGNTFR---YQFTAN--AGTHFWHAHT 239
++ +H HG SDG P + ++ G F+ Y + ++H H
Sbjct: 99 EVKTVVHLHGGVTPDD--SDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHA 156
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 60.7 bits (146), Expect = 8e-11
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 47/134 (35%)
Query: 148 VLADGVERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMD--------------------- 186
+ + + +PGP+I+V G RV + N +
Sbjct: 46 LHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPA 105
Query: 187 -------------------GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 227
+ H HG G +DG + G+ ++
Sbjct: 106 PNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGGG--NDGWA---DNAVGFGDAQLSEYP 160
Query: 228 AN--AGTHFWHAHT 239
+ A ++H H
Sbjct: 161 NDHQATQWWYHDHA 174
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 57.5 bits (138), Expect = 1e-09
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 153 VERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIH----QRGTQYSDGV 208
+G + + GP I+ D + V +N ++H HG+ G Y D
Sbjct: 55 DPQGEYEEHLGILGPVIRAEVDDVIQVRFKNLAS-RPYSLHAHGLSYEKSSEGKTYEDDS 113
Query: 209 P--FVTQCPITQGNTFRYQFTA-----------NAGTHFWHAH 238
P F I T+ Y + A +++
Sbjct: 114 PEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSA 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 7e-04
Identities = 52/344 (15%), Positives = 88/344 (25%), Gaps = 147/344 (42%)
Query: 2 NLHKVTSETVSETSLDQSTAASW-----WASASLKPAFPDVAGDPFF-AAPDPLAPAPQI 55
++H + ++ + E A K F + F A + A
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----- 154
Query: 56 SETLNPSFGSSSNP------------TYP---------------DLGYTSLDFD---TRG 85
L FG N TY +L T+LD + T+G
Sbjct: 155 --QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 86 LDVLR--GNAE--------LSSPEEC-----------ARACRE-GEPPKLCYYHF----- 118
L++L N LS P C + G P +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 119 --------------------------TLELYTVLGAACQLCTPNATNTVWSHCQCVLADG 152
+ + +G C PN ++ +L D
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT--SLPPS---ILEDS 327
Query: 153 VERG------ILAV---------------NRMLPGPSIQVCEGDRVVVDVRN-------- 183
+E +L++ N LP G +V + + N
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP-------AGKQVEISLVNGAKNLVVS 380
Query: 184 ----SMDGLENTIH----WHGIHQRGTQYSDGVP-FVTQ-CPIT 217
S+ GL T+ G+ Q +S+ F + P+
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 39.0 bits (90), Expect = 0.001
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 156 GILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCP 215
G+L GP I+ D ++V RN + + I Q P
Sbjct: 195 GLL-------GPYIRAEVEDNIMVTFRNQAS-RPYSFYSSLISYEEDQRQGAEPRKN--F 244
Query: 216 ITQGNTFRYQFTA 228
+ T Y +
Sbjct: 245 VKPNETKTYFWKV 257
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 35.6 bits (82), Expect = 0.003
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 154 ERGILAVNRMLPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQ 213
+ I A N + ++ V +GD V V V N I F Q
Sbjct: 25 VKNIRAFNVLNEPETLVVKKGDAVKVVVEN----KSPISEGFSID----------AFGVQ 70
Query: 214 CPITQGNTFRYQFTAN-AGTHFWHAHTGC 241
I G T FTA+ AG
Sbjct: 71 EVIKAGETKTISFTADKAGAFTIWCQLHP 99
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 34.4 bits (78), Expect = 0.012
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 164 LPGPSIQVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYS-----DGVPFVTQCP--I 216
P++++ G V V N+ G H I ++G Y+ D + T
Sbjct: 58 KKNPTLEIPAGATVDVTFINTNKGFG---HSFDITKKGPPYAVMPVIDPIVAGTGFSPVP 114
Query: 217 TQGNTFRYQFTA--NAGTHFWHAHTGC 241
G FT AGT+++
Sbjct: 115 KDGKFGYTDFTWHPTAGTYYYVCQIPG 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.018
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 12/32 (37%)
Query: 28 ASLKPAFPDVAGDPFFAAPDPLAPAPQISETL 59
ASLK A D APA I T+
Sbjct: 27 ASLKLY-----------ADDS-APALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.1
Identities = 31/226 (13%), Positives = 64/226 (28%), Gaps = 58/226 (25%)
Query: 63 FGSSSNPTYPDLGYTSLDFDTR-GLDVLRGNAELSS---PEECARACREGEPPKLCYYHF 118
F S++ T+ L + S+ +L + P E P +L
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLT-TNPRRLS---- 331
Query: 119 TLELYTVLGAACQLCTPNATNTVWSHCQC------------VLADGVER------GILAV 160
++ + + AT W H C VL R +
Sbjct: 332 ------IIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 161 NRMLPGPSIQVCEGDRVVVDVRNSMDGL-----------ENTIHWHGIHQRGTQYSDGVP 209
+ +P + + D + DV ++ L E+TI I+ +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 210 FVTQCPITQGNTFR-YQ---FTANAGTHFWHAHTG-----CPMSEK 246
+ + + N + + ++++H G E+
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida
antarctica} PDB: 2veo_A*
Length = 462
Score = 29.1 bits (64), Expect = 1.5
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 20 TAASWWASASLKPAFPDVAGDPFFAAPDPLAPAP--QI--SETLNPSFGSSSNPTYPDLG 75
AA + + A P+ DPF+ P + Q+ S + G+++N L
Sbjct: 20 LAAPAAETLDRRAALPNPYDDPFYTTPSNIGTFAKGQVIQSRKVPTDIGNANNAASFQLQ 79
Query: 76 YTSLDFD 82
Y + +
Sbjct: 80 YRTTNTQ 86
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.2
Length = 205
Score = 27.8 bits (62), Expect = 2.8
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 19 STAASWWASASLKPAFPDV-----AGDPFFAAPDPLAPA---PQISETLNPSFGSSSNPT 70
++A++ W+ + LK A P + + F P P P+ S L SF P
Sbjct: 2 ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSF-VGLAPL 60
Query: 71 YPDLGYTSLDFDTRG 85
+P L +S D +
Sbjct: 61 HPLLSLSSQDSTSFE 75
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A
{Escherichia coli} PDB: 3axf_A 1amf_A 1wod_A
Length = 237
Score = 27.6 bits (62), Expect = 3.2
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 26 ASASLKPAFPDVAGDPFFAAPDPLAPAPQISETLNPSFGSSSN 68
A+ASL A D+A F + SF SSS
Sbjct: 13 AAASLTNAMQDIATQ-FKKEKG---------VDVVSSFASSST 45
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 95
Score = 26.3 bits (58), Expect = 3.8
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 174 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV 208
G V V +R+ + + + G + G+
Sbjct: 11 GCPVKVQLRSGEEKFPGVVRFRGPLL-AERTVSGI 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.430
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,805,467
Number of extensions: 221252
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 63
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)