Query psy12113
Match_columns 369
No_of_seqs 238 out of 391
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:05:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04831 Popeye: Popeye protei 100.0 3.2E-43 7E-48 307.2 17.8 149 170-319 1-150 (153)
2 PRK11753 DNA-binding transcrip 99.6 5.3E-14 1.2E-18 128.3 17.1 128 180-319 6-138 (211)
3 PRK09392 ftrB transcriptional 99.6 2.6E-14 5.5E-19 133.3 15.3 129 176-317 12-144 (236)
4 PF04831 Popeye: Popeye protei 99.5 1.1E-15 2.4E-20 134.3 -0.1 61 61-122 1-62 (153)
5 PRK11161 fumarate/nitrate redu 99.5 4.2E-13 9.2E-18 124.9 15.4 130 177-318 17-152 (235)
6 cd00038 CAP_ED effector domain 99.5 3.7E-13 8.1E-18 107.9 12.2 107 179-294 2-113 (115)
7 PRK10402 DNA-binding transcrip 99.5 4.8E-13 1E-17 124.7 14.3 115 191-316 26-145 (226)
8 COG0664 Crp cAMP-binding prote 99.4 8.9E-12 1.9E-16 111.8 15.3 123 185-318 12-139 (214)
9 PF00027 cNMP_binding: Cyclic 99.4 6.3E-12 1.4E-16 98.3 10.5 85 199-290 2-91 (91)
10 PRK09391 fixK transcriptional 99.3 2.7E-11 5.8E-16 113.5 15.3 119 187-319 25-152 (230)
11 smart00100 cNMP Cyclic nucleot 99.3 4.1E-11 9E-16 96.2 12.9 109 179-294 2-115 (120)
12 TIGR03697 NtcA_cyano global ni 99.3 4.6E-11 9.9E-16 107.3 13.5 107 204-319 1-112 (193)
13 PRK13918 CRP/FNR family transc 99.3 1E-10 2.2E-15 106.2 13.4 106 195-317 5-116 (202)
14 PLN03192 Voltage-dependent pot 99.2 2.9E-10 6.2E-15 124.9 15.2 114 178-300 381-498 (823)
15 COG2905 Predicted signal-trans 99.1 7.9E-10 1.7E-14 114.3 13.5 160 177-351 13-173 (610)
16 PLN02868 acyl-CoA thioesterase 99.1 1.5E-09 3.3E-14 110.4 13.1 107 177-294 14-124 (413)
17 KOG0498|consensus 98.7 2.9E-08 6.3E-13 106.8 9.1 122 178-308 426-553 (727)
18 KOG1113|consensus 98.7 2.6E-08 5.7E-13 98.1 7.2 107 178-293 129-235 (368)
19 KOG0614|consensus 98.4 2.6E-07 5.6E-12 95.3 4.1 97 184-287 165-261 (732)
20 KOG2968|consensus 98.1 7.1E-06 1.5E-10 88.9 9.1 156 184-355 379-546 (1158)
21 KOG0614|consensus 98.1 2E-06 4.2E-11 89.0 4.6 109 175-292 276-391 (732)
22 KOG0500|consensus 98.1 4.7E-05 1E-09 78.3 13.6 110 185-296 319-431 (536)
23 KOG0501|consensus 98.0 2.7E-06 5.8E-11 88.6 2.6 109 185-298 560-668 (971)
24 KOG2968|consensus 97.8 2.8E-05 6E-10 84.5 5.5 104 191-301 502-611 (1158)
25 KOG1113|consensus 97.6 0.00012 2.6E-09 72.7 6.0 111 168-286 231-347 (368)
26 KOG0499|consensus 97.5 0.0014 3E-08 69.1 12.5 113 178-296 534-649 (815)
27 PRK11832 putative DNA-binding 97.4 0.0081 1.8E-07 56.3 15.6 121 187-316 9-135 (207)
28 PF07883 Cupin_2: Cupin domain 94.4 0.35 7.6E-06 36.0 8.2 69 198-276 2-70 (71)
29 COG3718 IolB Uncharacterized e 91.9 0.48 1E-05 45.3 6.7 77 196-279 31-111 (270)
30 COG0662 {ManC} Mannose-6-phosp 86.1 2.4 5.1E-05 36.3 6.3 53 195-249 37-89 (127)
31 PRK11171 hypothetical protein; 82.6 7.7 0.00017 37.5 8.9 72 197-277 64-135 (266)
32 PRK13290 ectC L-ectoine syntha 81.7 11 0.00025 32.3 8.7 66 199-277 40-107 (125)
33 smart00835 Cupin_1 Cupin. This 78.4 13 0.00028 32.2 8.1 75 196-279 32-111 (146)
34 TIGR03214 ura-cupin putative a 78.2 12 0.00026 36.1 8.6 70 198-277 62-132 (260)
35 PF04962 KduI: KduI/IolB famil 78.0 6.8 0.00015 38.0 6.8 78 196-279 29-108 (261)
36 PRK09943 DNA-binding transcrip 76.6 14 0.0003 33.4 8.1 68 200-277 113-180 (185)
37 TIGR02272 gentisate_1_2 gentis 70.5 19 0.00041 36.3 8.0 74 199-285 255-328 (335)
38 PRK11171 hypothetical protein; 70.0 31 0.00067 33.3 9.2 71 196-276 186-256 (266)
39 PF12973 Cupin_7: ChrR Cupin-l 64.4 46 0.001 26.4 7.8 63 196-275 26-88 (91)
40 PF05899 Cupin_3: Protein of u 63.5 14 0.0003 28.6 4.3 32 216-249 26-58 (74)
41 PHA00672 hypothetical protein 62.0 20 0.00044 31.3 5.4 72 195-280 48-119 (152)
42 KOG3542|consensus 60.0 26 0.00057 38.6 6.9 79 202-287 311-390 (1283)
43 COG1917 Uncharacterized conser 59.9 23 0.00051 29.8 5.6 52 196-249 45-96 (131)
44 PRK15460 cpsB mannose-1-phosph 59.5 47 0.001 35.1 8.8 71 197-277 388-458 (478)
45 COG3257 GlxB Uncharacterized p 55.4 50 0.0011 31.6 7.3 70 199-278 66-136 (264)
46 TIGR01479 GMP_PMI mannose-1-ph 53.6 67 0.0014 33.6 8.8 71 197-277 379-449 (468)
47 PF10688 Imp-YgjV: Bacterial i 51.7 41 0.00088 30.2 6.0 49 114-163 114-162 (163)
48 PF01050 MannoseP_isomer: Mann 51.6 46 0.001 29.6 6.2 51 196-248 65-115 (151)
49 TIGR03404 bicupin_oxalic bicup 49.1 92 0.002 31.7 8.7 72 196-278 247-324 (367)
50 KOG3542|consensus 43.7 56 0.0012 36.2 6.3 99 163-278 22-127 (1283)
51 PRK13264 3-hydroxyanthranilate 41.1 73 0.0016 29.4 5.9 57 215-282 54-113 (177)
52 PF05726 Pirin_C: Pirin C-term 38.2 99 0.0021 25.3 5.8 71 199-283 4-75 (104)
53 PF11699 CENP-C_C: Mif2/CENP-C 36.8 1.5E+02 0.0032 23.9 6.4 50 198-249 16-65 (85)
54 TIGR02451 anti_sig_ChrR anti-s 35.9 75 0.0016 29.8 5.3 71 196-281 129-199 (215)
55 TIGR03037 anthran_nbaC 3-hydro 35.0 69 0.0015 29.0 4.7 55 215-280 48-105 (159)
56 COG4095 Uncharacterized conser 34.2 1.2E+02 0.0026 24.8 5.5 54 103-159 29-82 (89)
57 PF14525 AraC_binding_2: AraC- 33.3 1.5E+02 0.0032 25.1 6.5 65 218-291 57-121 (172)
58 COG4101 Predicted mannose-6-ph 33.2 1.6E+02 0.0034 25.7 6.3 38 218-255 69-108 (142)
59 PRK15457 ethanolamine utilizat 32.5 74 0.0016 30.6 4.6 31 218-249 177-207 (233)
60 PF08078 PsaX: PsaX family; I 31.7 71 0.0015 21.7 3.1 18 142-159 17-34 (37)
61 PF02311 AraC_binding: AraC-li 30.3 96 0.0021 24.8 4.6 28 218-246 25-52 (136)
62 PF06865 DUF1255: Protein of u 29.1 2.8E+02 0.006 23.0 6.9 62 200-275 29-91 (94)
63 COG4766 EutQ Ethanolamine util 27.6 1.6E+02 0.0034 26.8 5.5 30 218-248 120-149 (176)
64 TIGR03214 ura-cupin putative a 27.5 1.6E+02 0.0036 28.2 6.3 52 195-249 180-232 (260)
65 PF11460 DUF3007: Protein of u 25.7 4.1E+02 0.0089 22.4 8.9 80 114-195 8-101 (104)
66 PF06249 EutQ: Ethanolamine ut 24.4 1.3E+02 0.0028 27.0 4.5 32 216-249 96-127 (152)
67 PRK09685 DNA-binding transcrip 23.8 1.9E+02 0.004 27.6 5.9 59 219-286 74-132 (302)
68 PF08743 Nse4_C: Nse4 C-termin 22.7 73 0.0016 25.8 2.4 57 220-288 27-83 (93)
69 PF09604 Potass_KdpF: F subuni 21.9 1.3E+02 0.0029 18.9 2.9 22 37-58 3-25 (25)
70 PF06719 AraC_N: AraC-type tra 21.0 2.3E+02 0.005 24.8 5.5 68 218-289 25-92 (155)
71 TIGR03404 bicupin_oxalic bicup 20.4 2.6E+02 0.0055 28.5 6.3 52 196-249 69-124 (367)
No 1
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=100.00 E-value=3.2e-43 Score=307.21 Aligned_cols=149 Identities=52% Similarity=0.917 Sum_probs=145.1
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHhc-cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeecc
Q psy12113 170 ELTELYIRVFNPVKISKKQFKELTSE-ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSP 248 (369)
Q Consensus 170 e~~~lY~~lF~pL~ls~~qf~~L~~~-~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~ 248 (369)
|++++|+++|+||++|+++|++|+++ ++++++++|+.|+.||+|++| +|++++||+++|+++|+++|+|+|.||+|||
T Consensus 1 Ele~lY~~lF~Pl~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~d-rLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSP 79 (153)
T PF04831_consen 1 ELEELYETLFQPLKVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPID-RLSLLLSGRMRVSCDGRFLHYIYPYQFLDSP 79 (153)
T ss_pred CHHHHHHHhccCcCCCHHHHHHHHhhhceEEEecCCceeeecCCcccc-eEeEEEcCcEEEEECCEeeEeecccccccCh
Confidence 68999999999999999999999998 899999999999999999998 9999999999999999999999999999999
Q ss_pred ccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 249 EYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 249 s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
||++.+++++|.|||||+|+|+|+|++|+|++|+.+++++|+|+.+|.+++|+||++|||++|+++.+..+
T Consensus 80 EW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy~ln~~~~~~~g 150 (153)
T PF04831_consen 80 EWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLYSLNEKLFTKRG 150 (153)
T ss_pred hhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhHhHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876654
No 2
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.59 E-value=5.3e-14 Score=128.33 Aligned_cols=128 Identities=13% Similarity=0.189 Sum_probs=106.8
Q ss_pred CCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecccccccc
Q psy12113 180 NPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQ 254 (369)
Q Consensus 180 ~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~ 254 (369)
+|+ |+++.+.+.+.++.++++||+.++.||+++ + ++|+|++|.++++. +| .++.+++||+++|+.+.+..+
T Consensus 6 ~~~--~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~-~-~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~ 81 (211)
T PRK11753 6 KPQ--TDPTLEWFLSHCHIHKYPAKSTLIHAGEKA-E-TLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 81 (211)
T ss_pred CCC--CHHHHHHHHhhCeEEEeCCCCEEEeCCCCC-C-eEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCC
Confidence 465 899999999999999999999999999974 5 89999999999985 34 488999999999998887632
Q ss_pred CCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 255 NSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 255 ~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
..++++++|.+||+++.+++++|.++++++|.+...+...+ ++++....+++.....
T Consensus 82 ----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~----~~~l~~~~~~~~~~~~ 138 (211)
T PRK11753 82 ----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM----ARRLQNTSRKVGDLAF 138 (211)
T ss_pred ----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 24557999999999999999999999999999998766544 5566666666554433
No 3
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.59 E-value=2.6e-14 Score=133.32 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=109.6
Q ss_pred HhhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC----CeEEEEecCCeeeeccccc
Q psy12113 176 IRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN----DTHLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 176 ~~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~----g~~l~~i~pg~F~ge~s~~ 251 (369)
.++|+.| ++++.+.+.+.++.+++++|+.++.||+++ + ++|+|++|.++++.. +.++.+++||+++|+.+++
T Consensus 12 ~~~f~~L--~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~-~-~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~ 87 (236)
T PRK09392 12 LPLFADM--ADATFERLMRGAFLQRFPPGTMLITEGEPA-D-FLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVV 87 (236)
T ss_pred CccccCC--CHHHHHHHHhhcceeecCCCCEEEeCCCcc-c-eEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHh
Confidence 4578876 899999999999999999999999999974 5 899999999999862 4488999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTN 317 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~ 317 (369)
++.+ ++++++|.++|+++.++++++.+++.++|.+...+...++ +++..+.+++...
T Consensus 88 ~~~~-----~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~----~~~~~~~~~~~~~ 144 (236)
T PRK09392 88 LDAP-----YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELA----GCYRGLVKSLKNQ 144 (236)
T ss_pred CCCC-----CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 7544 4579999999999999999999999999999988765554 4566655555444
No 4
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=99.53 E-value=1.1e-15 Score=134.28 Aligned_cols=61 Identities=44% Similarity=0.790 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCccCChhhhcccc-chhhhhhhhcchhhhhhcccccCccceeeeehhHHHHH
Q psy12113 61 ELTELYIRVFNPVKISKKQFKELT-SEATICKLAQGESYAIEERTSADERLSILLRGKLLLAV 122 (369)
Q Consensus 61 e~~~ly~~~f~pl~v~~~~f~~l~-~~~~~~~Lfq~a~ya~e~~tp~~~~ls~Ll~~r~~v~v 122 (369)
|+++||+++|+||+||+++||+|+ +.+.++.|.++++||+|++||+| +||+||+||++|+.
T Consensus 1 Ele~lY~~lF~Pl~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~d-rLSlLLsGr~~Vs~ 62 (153)
T PF04831_consen 1 ELEELYETLFQPLKVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPID-RLSLLLSGRMRVSC 62 (153)
T ss_pred CHHHHHHHhccCcCCCHHHHHHHHhhhceEEEecCCceeeecCCcccc-eEeEEEcCcEEEEE
Confidence 799999999999999999999998 56999999999999999999996 99999999999974
No 5
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.51 E-value=4.2e-13 Score=124.86 Aligned_cols=130 Identities=13% Similarity=0.094 Sum_probs=106.3
Q ss_pred hhcCCCCCCHHHHHHHHhccE-EEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecccc
Q psy12113 177 RVFNPVKISKKQFKELTSEAT-ICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEY 250 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~-~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~ 250 (369)
.++.|..+|+++++.|.+.++ .+.++||+.++.||+++ + ++|+|.+|.++++. +| .++.+..||+++|+.+.
T Consensus 17 ~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~-~-~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 17 QLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDEL-K-SLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCc-c-eEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 356666789999999999875 56899999999999985 4 89999999999987 24 48889999999998765
Q ss_pred ccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12113 251 MSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNA 318 (369)
Q Consensus 251 ~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a 318 (369)
+. +.++++++|+++|+++.+|++++.+++.++|.+...+...++ +++....+++...+
T Consensus 95 ~~------~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~----~~~~~~~~~~~~l~ 152 (235)
T PRK11161 95 GS------GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS----GEIKGDQEMILLLS 152 (235)
T ss_pred cC------CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 43 234568999999999999999999999999999998776664 46666555555443
No 6
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.49 E-value=3.7e-13 Score=107.91 Aligned_cols=107 Identities=20% Similarity=0.287 Sum_probs=94.5
Q ss_pred cCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---C--eEEEEecCCeeeeccccccc
Q psy12113 179 FNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---D--THLHYVCPFQFVDSPEYMSC 253 (369)
Q Consensus 179 F~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g--~~l~~i~pg~F~ge~s~~~~ 253 (369)
|+.+ ++++.+.+.+.++.+.+++|+.++.+|+++ + ++|+|++|.++++.. | ..++.+.+|+++|..+++.
T Consensus 2 f~~l--~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~-~-~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~- 76 (115)
T cd00038 2 FSGL--DDEELEELADALEERRFPAGEVIIRQGDPA-D-SLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLG- 76 (115)
T ss_pred cccC--CHHHHHHHHhhceeeeeCCCCEEEcCCCCC-C-eEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhc-
Confidence 5554 899999999999999999999999999974 4 899999999999873 2 5889999999999988874
Q ss_pred cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHH
Q psy12113 254 QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSV 294 (369)
Q Consensus 254 ~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~ 294 (369)
+..++.+++|.++|+++.++++++..+++++|.+...
T Consensus 77 ----~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 77 ----NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred ----CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 2345679999999999999999999999999988764
No 7
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.49 E-value=4.8e-13 Score=124.69 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=96.0
Q ss_pred HHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeeccccccccCCCCCcceeEE
Q psy12113 191 ELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYMSCQNSSDELYQVSI 265 (369)
Q Consensus 191 ~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi 265 (369)
.|.+.++.+.++||+.++.+|+++ + ++|+|++|.++++. +|+ ++.+..||+++|+.+++++. .+++++
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~-~-~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~-----~~~~~~ 98 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQP-S-YLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKD-----HETKAV 98 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCC-c-eEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCC-----CCCccE
Confidence 577889999999999999999975 4 89999999999987 344 88999999999999987643 455799
Q ss_pred EeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12113 266 TAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIST 316 (369)
Q Consensus 266 ~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~ 316 (369)
+|.+||+++.++++++.+++.++|.+...+...+++ |+....+.+..
T Consensus 99 ~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~----~~~~~~~~~~~ 145 (226)
T PRK10402 99 QAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSH----KNYRNIVSLTQ 145 (226)
T ss_pred EEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999999999999999999999999998887766654 55444444333
No 8
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.40 E-value=8.9e-12 Score=111.79 Aligned_cols=123 Identities=23% Similarity=0.233 Sum_probs=103.5
Q ss_pred CHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccCCCCC
Q psy12113 185 SKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQNSSDE 259 (369)
Q Consensus 185 s~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ss~~ 259 (369)
..+....+....+.+.+++|+.++.||++ .+ .+|+|.+|.++++. +| .++.++.||++||+++.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~-~~-~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~----- 84 (214)
T COG0664 12 PSELLELLALKLEVRKLPKGEVLFTEGEE-AD-SLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGD----- 84 (214)
T ss_pred CHHHHHHHhhhceeEeeCCCCEEEcCCCc-Cc-eEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCC-----
Confidence 56666777777899999999999999997 55 89999999999997 34 488999999999999988754
Q ss_pred cceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12113 260 LYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNA 318 (369)
Q Consensus 260 ~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a 318 (369)
.++++++|.+||+++.++++++.+++++.|.+...+.. .+++++....+.+...+
T Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~----~~~~~l~~~~~~~~~~~ 139 (214)
T COG0664 85 PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLR----LLARRLRQALERLSLLA 139 (214)
T ss_pred CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 45579999999999999999999999988998887764 45567777777766553
No 9
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=6.3e-12 Score=98.27 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=75.7
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---Ce--EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEE
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DT--HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLY 273 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~--~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrv 273 (369)
++++||+.++.+|+++ + ++|+|++|.++++.. |+ ++..+.||+++|+.+++... .++.+++|.++|++
T Consensus 2 ~~~~~g~~i~~~g~~~-~-~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-----~~~~~~~a~~~~~~ 74 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPC-D-HIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGK-----PSPFTVIALTDSEV 74 (91)
T ss_dssp EEESTTEEEEETTSBE-S-EEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTS-----BBSSEEEESSSEEE
T ss_pred eEECCCCEEEeCCCcC-C-EEEEEEECceEEEeceecceeeeecceeeeccccceeecCCC-----ccEEEEEEccCEEE
Confidence 6899999999999974 5 899999999999972 44 68999999999999999855 34469999999999
Q ss_pred EEEeHHHHHHHHhcCcc
Q psy12113 274 LCWSRISLDRLLRHRPM 290 (369)
Q Consensus 274 l~w~r~~L~~Ll~~~P~ 290 (369)
+.+++++|.++++++|+
T Consensus 75 ~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 75 LRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEHHHHHHHHHHSHH
T ss_pred EEEeHHHHHHHHHhCcC
Confidence 99999999999999985
No 10
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.34 E-value=2.7e-11 Score=113.45 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=96.2
Q ss_pred HHHHHHHh----ccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeeccccccccCCC
Q psy12113 187 KQFKELTS----EATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 187 ~qf~~L~~----~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
.-|..+.. .++.++++||+.++.+|+++ + ++|+|++|.++++. +|+ ++.++.||+++|+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~kge~l~~~Gd~~-~-~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~-------- 94 (230)
T PRK09391 25 NPFAAISGHAGLVASEFSYKKGEEIYGEGEPA-D-YVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES-------- 94 (230)
T ss_pred ccHHHHhccccceeeeEEECCCCEEECCCCCC-C-eEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC--------
Confidence 44666654 47889999999999999975 4 89999999999986 344 889999999999532
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
...++++++|++||+++.++++++++++.++|.+...+...+ ++|++.+.+++...+.
T Consensus 95 ~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l----~~~l~~~~~~~~~l~~ 152 (230)
T PRK09391 95 GSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLT----AGGLRHAQDHMLLLGR 152 (230)
T ss_pred CCcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHH----HHHHHHHHHHHHHHcC
Confidence 234568999999999999999999999999999999877555 4577766666655433
No 11
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.31 E-value=4.1e-11 Score=96.21 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=93.5
Q ss_pred cCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-----CeEEEEecCCeeeeccccccc
Q psy12113 179 FNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-----DTHLHYVCPFQFVDSPEYMSC 253 (369)
Q Consensus 179 F~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-----g~~l~~i~pg~F~ge~s~~~~ 253 (369)
|.++ ++++.+++.+.++.+.+++|+.++.+|+++ + .+|+|.+|.+++... +..+.++.||+++|+.+++..
T Consensus 2 f~~l--~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~-~-~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~ 77 (120)
T smart00100 2 FKNL--DAEELRELADALEPVRYPAGEVIIRQGDVG-D-SFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN 77 (120)
T ss_pred cCCC--CHHHHHHHHHhceEEEeCCCCEEEeCCCcC-C-cEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC
Confidence 5554 899999999999999999999999999975 4 899999999999862 348899999999999998731
Q ss_pred cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHH
Q psy12113 254 QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSV 294 (369)
Q Consensus 254 ~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~ 294 (369)
. ...++++++|.++|+++.++++++...+.++|.+...
T Consensus 78 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 115 (120)
T smart00100 78 S---RRAASATAVALELATLLRIDFRDFLQLLQENPQLLLE 115 (120)
T ss_pred C---CcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHH
Confidence 1 1234579999999999999999999999999987664
No 12
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.29 E-value=4.6e-11 Score=107.35 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=88.1
Q ss_pred CCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 204 GESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 204 Ge~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
|+.++.||++ .+ ++|+|++|.++++. +|+ ++.+++||+++|+.+++++.++ .+.++++|.+||+++.+|+
T Consensus 1 g~~l~~~g~~-~~-~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~---~~~~~~~A~~~~~v~~i~~ 75 (193)
T TIGR03697 1 GKTIFFPGDP-AE-KVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRS---DRFYHAVAFTRVELLAVPI 75 (193)
T ss_pred CCceecCCCC-CC-cEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCC---ccceEEEEecceEEEEeeH
Confidence 7899999997 45 89999999999986 344 7899999999999988865432 1236889999999999999
Q ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 279 ISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 279 ~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
++++++++++|.+...+...+ ++|+....+++...+.
T Consensus 76 ~~~~~l~~~~p~l~~~~~~~l----~~~l~~~~~~~~~l~~ 112 (193)
T TIGR03697 76 EQVEKAIEEDPDLSMLLLQGL----SSRILQTEMMIETLAH 112 (193)
T ss_pred HHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 999999999999999877555 5577777777665444
No 13
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.25 E-value=1e-10 Score=106.17 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=81.0
Q ss_pred ccEEEEecCCCeEEecCCc-CCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeeccccccccCCCCCcceeEEEee
Q psy12113 195 EATICKLAQGESYAIEERT-SADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE 268 (369)
Q Consensus 195 ~~~~r~L~kGe~l~~EG~t-~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~ 268 (369)
.++.++++||+.++.||++ +.+ ++|+|++|.++++. +|+ +++++.||+++|+++++. ..++++++|+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~-~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~------~~~~~~~~A~ 77 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSD-MLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAG------AERAYFAEAV 77 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCC-eEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcC------CCCCceEEEc
Confidence 4678899999999999994 245 89999999999987 344 999999999999976553 2345689999
Q ss_pred CCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12113 269 EDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTN 317 (369)
Q Consensus 269 edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~ 317 (369)
+||+++.++++++ +|.+...+...+ ++++..+.+++...
T Consensus 78 ~~~~v~~i~~~~~------~~~~~~~l~~~l----~~~~~~~~~~~~~l 116 (202)
T PRK13918 78 TDSRIDVLNPALM------SAEDNLVLTQHL----VRTLARAYESIYRL 116 (202)
T ss_pred CceEEEEEEHHHc------ChhhHHHHHHHH----HHHHHHHHHHHHHH
Confidence 9999999999987 566665544444 44555555555443
No 14
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.18 E-value=2.9e-10 Score=124.90 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=99.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC----CeEEEEecCCeeeeccccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN----DTHLHYVCPFQFVDSPEYMSC 253 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~----g~~l~~i~pg~F~ge~s~~~~ 253 (369)
+|+.+ |++..+.|+...+.+.++|||.++.||+.+ + .+|+|.+|.+++... ++++..+.||++|||.+++.+
T Consensus 381 lF~~~--s~~~l~~L~~~~~~~~~~pge~I~~qge~~-~-~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~ 456 (823)
T PLN03192 381 LFKGV--SREILLLLVTKMKAEYIPPREDVIMQNEAP-D-DVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCC 456 (823)
T ss_pred chhcC--CHHHHHHHHHhhheeeeCCCCEEEECCCCC-c-eEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcC
Confidence 57755 899999999999999999999999999975 4 799999999999752 458899999999999999875
Q ss_pred cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHH
Q psy12113 254 QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIG 300 (369)
Q Consensus 254 ~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~lig 300 (369)
.| +++|+.|.++|+++.++|++|.++++++|.....+.+.+.
T Consensus 457 ~p-----~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l 498 (823)
T PLN03192 457 RP-----QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFL 498 (823)
T ss_pred CC-----CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHH
Confidence 54 4469999999999999999999999999998887654443
No 15
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.11 E-value=7.9e-10 Score=114.33 Aligned_cols=160 Identities=14% Similarity=0.244 Sum_probs=135.1
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccccccccC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s~~~~~~ 255 (369)
+.|..| |++++..|++...+..++|||.+..-|.+ .. .||+|.+|.|.|.. +|+.+.....|+.||=.++++..+
T Consensus 13 pPF~~L--~~eel~~L~~~l~v~yy~kge~ii~~~~p-~~-~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l~~~~~ 88 (610)
T COG2905 13 PPFSQL--PAEELEQLMGALEVKYYRKGEIIIYAGSP-VH-YLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSLFTELN 88 (610)
T ss_pred CCcccC--CHHHHHHHHhhhccccccCCCeeecCCCC-cc-eeEEEEeceeeEEcCCCeeeeeeccCccccchhhcccCC
Confidence 347755 99999999999999999999999999995 55 89999999999887 588899999999999999998766
Q ss_pred CCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhhccccccc
Q psy12113 256 SSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQNKDEPWRHKMNRSVSV 335 (369)
Q Consensus 256 ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~~~~~~~~~~~~~s~~~ 335 (369)
++. ...|+||+-++.+|++.+.++.+++|.++..|. ...+.|+++..++..+. +.+|+.+..+.+..+-
T Consensus 89 ~~~-----~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~----~~~akR~~~~~~~~~eq--~~~e~~~trv~~~~~~ 157 (610)
T COG2905 89 KQR-----YMAAEEDSLCYLLPKSVFMQLMEENPEFADFFL----RSLAKRLRDIADRLAEQ--GESEFILTRVGEVKTL 157 (610)
T ss_pred Ccc-----eeEeeccceEEecCHHHHHHHHHhCcHHHHHHH----HHHHHHHHHHHHHHHhh--ccchHHHHHHHHHhcC
Confidence 554 688999999999999999999999999999987 45567888888776665 6778888888887777
Q ss_pred cccccccccccccccc
Q psy12113 336 DAVNTSSRGQVRSSNW 351 (369)
Q Consensus 336 ~~v~~~~~~~~~~~~~ 351 (369)
.+|.-.+.-.+++-+-
T Consensus 158 ~~~~v~~~~~i~~aa~ 173 (610)
T COG2905 158 PAVTVSPQASIQDAAR 173 (610)
T ss_pred CCcccCccCcHHHHHH
Confidence 7777766666665544
No 16
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.06 E-value=1.5e-09 Score=110.42 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=92.7
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC----CeEEEEecCCeeeecccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN----DTHLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~----g~~l~~i~pg~F~ge~s~~~ 252 (369)
.+|+.| ++++.+++.+.++.+++++|+.++.+|+. .+ ++|+|++|+++++.. +.++..+.||++||+. +.
T Consensus 14 ~~F~~L--~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~-~~-~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~--l~ 87 (413)
T PLN02868 14 PLLQRL--PSSSLKKIAEVVVPKRYGKGEYVVREGEP-GD-GLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG--LS 87 (413)
T ss_pred cccccC--CHHHHHHHHHhceEEEECCCCEEEeCCCc-Cc-eEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh--hC
Confidence 468866 89999999999999999999999999997 45 899999999999872 3578889999999975 32
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHH
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSV 294 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~ 294 (369)
+..++++++|.++|+++.++++.+..+....+.-...
T Consensus 88 -----~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~~ 124 (413)
T PLN02868 88 -----GSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSDK 124 (413)
T ss_pred -----CCCcccEEEECCCEEEEEEcHHHHhhhcccccccccC
Confidence 3557789999999999999999999999887766544
No 17
>KOG0498|consensus
Probab=98.73 E-value=2.9e-08 Score=106.84 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCC----eEEEEecCCeeee-cccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCND----THLHYVCPFQFVD-SPEYMS 252 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g----~~l~~i~pg~F~g-e~s~~~ 252 (369)
+|+.+ +++-+..|....+...+.+||.+..||+++. .+|||.+|.+.+...+ .....++||+|+| |.....
T Consensus 426 LF~~m--d~~~L~al~~rlk~~~f~pge~iireGd~v~--~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~ 501 (727)
T KOG0498|consen 426 LFAGM--DDGLLDALCSRLKPEYFTPGEYIIREGDPVT--DMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWC 501 (727)
T ss_pred hhhcC--CHHHHHHHHHHhhhhccCCCCeEEecCCccc--eeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHH
Confidence 47765 7899999999999999999999999999754 6999999999998854 6889999999999 544333
Q ss_pred c-cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Q psy12113 253 C-QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLY 308 (369)
Q Consensus 253 ~-~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~ 308 (369)
. .|++ .|+.|.|.|+++.+++++|...++.+|.+...+.+-.-+.+....+
T Consensus 502 ~~~p~t-----~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r 553 (727)
T KOG0498|consen 502 LDLPQT-----RTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWR 553 (727)
T ss_pred hcCCCC-----ceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhh
Confidence 3 5554 5999999999999999999999999999888766533344444333
No 18
>KOG1113|consensus
Probab=98.71 E-value=2.6e-08 Score=98.14 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=96.6
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+|..| +++|...+.+.+...++++|+.+..||+. .| .+|+|-+|...|+++|.-+.-+.||.+|||.+.+.+.|..
T Consensus 129 LF~~L--d~eq~~~v~dam~~~~v~~G~~Vi~qGde-Gd-~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmyn~PRa 204 (368)
T KOG1113|consen 129 LFANL--DDEQLSQVLDAMFEKRVKAGETVIKQGDE-GD-NFYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMYNPPRA 204 (368)
T ss_pred ccccC--CHHHHHHHHHhhceeeecCCcEEEecCCc-CC-cEEEEecceEEEEECCeEEeeeCCCCchhhhHhhhCCCcc
Confidence 47765 89999999999999999999999999997 66 8999999999999999999999999999999999988876
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
+ |+.|.+++.++.++|..+++.+..+-...+
T Consensus 205 A-----Tv~a~t~~klWgldr~SFrrIi~~s~~kkr 235 (368)
T KOG1113|consen 205 A-----TVVAKSLKKLWGLDRTSFRRIIMKSCIKKR 235 (368)
T ss_pred c-----ceeeccccceEEEeeceeEEEeeccchhhh
Confidence 4 999999999999999888887776655554
No 19
>KOG0614|consensus
Probab=98.37 E-value=2.6e-07 Score=95.35 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=90.2
Q ss_pred CCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCccee
Q psy12113 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQV 263 (369)
Q Consensus 184 ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qv 263 (369)
+.++|.+++++++-..++.+|..+.+||++ .+ ++|.+-+|++.|+++|+.+.-++||.-|||.+-..+-+.++
T Consensus 165 Ld~~Qi~e~v~~Myp~~~~~gs~IIrege~-Gs-~~yV~aeG~~~V~~~g~ll~~m~~gtvFGELAILynctRtA----- 237 (732)
T KOG0614|consen 165 LDASQIKELVDCMYPVEYRAGSWIIREGEP-GS-HLYVSAEGELQVSREGKLLGKMGAGTVFGELAILYNCTRTA----- 237 (732)
T ss_pred hhHHHHHHHHHhhCcccccCCcEEEecCCC-Cc-eEEEeecceEEEeeCCeeeeccCCchhhhHHHHHhCCcchh-----
Confidence 478999999999999999999999999996 55 99999999999999999999999999999999888777764
Q ss_pred EEEeeCCeEEEEEeHHHHHHHHhc
Q psy12113 264 SITAEEDCLYLCWSRISLDRLLRH 287 (369)
Q Consensus 264 Ti~A~edcrvl~w~r~~L~~Ll~~ 287 (369)
|+.|+++|+++.++|+-++.++.+
T Consensus 238 sV~alt~~~lWaidR~vFq~IM~~ 261 (732)
T KOG0614|consen 238 SVRALTDVRLWAIDREVFQAIMMR 261 (732)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 20
>KOG2968|consensus
Probab=98.14 E-value=7.1e-06 Score=88.92 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=111.7
Q ss_pred CCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe-----------CCeEEEEecCCeeeecccccc
Q psy12113 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC-----------NDTHLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 184 ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-----------~g~~l~~i~pg~F~ge~s~~~ 252 (369)
++.++...+.+.++. .+.+..+|.- .. .+|++++|.+-|++ .|..++.++||+.+|..+.++
T Consensus 379 ~~~~~si~ll~~~ke-----itiiv~q~a~-~~-gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt 451 (1158)
T KOG2968|consen 379 LSNEDSIVLLELEKE-----ITIIVEQGAR-DV-GLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILT 451 (1158)
T ss_pred hcccchhhhhccccc-----eEEEEecccc-cc-eeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhc
Confidence 344554444443332 2336777775 44 89999999998875 166889999999999999998
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCchhhhhccc
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ-NKDEPWRHKMNR 331 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~-~~~~~~~~~~~~ 331 (369)
+.++. +||+|-+||++..++|++|.+++.++|.+..-+..-+-+++...++.+.. ... -+.||=+..-..
T Consensus 452 ~e~S~-----~tirArsdt~v~~isrs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~----AldWv~l~~g~alyrq 522 (1158)
T KOG2968|consen 452 NEPSF-----ITIRARSDTRVLFISRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDF----ALDWVRLEPGQALYRQ 522 (1158)
T ss_pred CCcce-----EEEEEecceEEEEeeHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhh----hcceEEeccccHHHhc
Confidence 87766 69999999999999999999999999955544443333444444444331 111 256666644455
Q ss_pred cccccccccccccccccccccccc
Q psy12113 332 SVSVDAVNTSSRGQVRSSNWRSTH 355 (369)
Q Consensus 332 s~~~~~v~~~~~~~~~~~~~~~~~ 355 (369)
-.+.|.+.--..||+||---++..
T Consensus 523 gD~Sd~iyvVl~GRlRsv~~~~~~ 546 (1158)
T KOG2968|consen 523 GDSSDSIYVVLNGRLRSVIRQSGG 546 (1158)
T ss_pred CCccCcEEEEecCeehhhhhccCc
Confidence 788999999999999998765443
No 21
>KOG0614|consensus
Probab=98.14 E-value=2e-06 Score=89.00 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=94.6
Q ss_pred HHhhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC------CeEEEEecCCeeeecc
Q psy12113 175 YIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN------DTHLHYVCPFQFVDSP 248 (369)
Q Consensus 175 Y~~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~------g~~l~~i~pg~F~ge~ 248 (369)
+.++|+.| |++-+.++++..+...+++|+.+..||+. .| .+|+|-+|.|+|++. .+.+.....|++|||-
T Consensus 276 sv~~~q~l--~Ee~L~KiaD~le~~~Yd~g~yIirqge~-G~-~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~ 351 (732)
T KOG0614|consen 276 SVPLFQNL--PEELLLKIADVLEEEYYDAGEYIIRQGEK-GD-TFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGER 351 (732)
T ss_pred hhhhhccC--CHHHHHHHHHHHHHHhhcCCceEEeecCC-CC-eEEEEecceEEEeecCCCCCchhHHhhccccchhhHH
Confidence 34568876 89999999999999999999999999996 56 899999999999973 3488999999999999
Q ss_pred ccccccCCCCCcceeEEEeeCC-eEEEEEeHHHHHHHHhcCccHH
Q psy12113 249 EYMSCQNSSDELYQVSITAEED-CLYLCWSRISLDRLLRHRPMLK 292 (369)
Q Consensus 249 s~~~~~~ss~~~~qvTi~A~ed-crvl~w~r~~L~~Ll~~~P~L~ 292 (369)
++.. +++.+++|.|.++ ..+++++|+.+..++-.--.+.
T Consensus 352 al~~-----edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 352 ALLG-----EDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred Hhhc-----cCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 9886 6777789999997 9999999999998887655555
No 22
>KOG0500|consensus
Probab=98.10 E-value=4.7e-05 Score=78.31 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=92.0
Q ss_pred CHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-C-eEEEEecCCeeeeccccccccCCCC-Ccc
Q psy12113 185 SKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-D-THLHYVCPFQFVDSPEYMSCQNSSD-ELY 261 (369)
Q Consensus 185 s~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-g-~~l~~i~pg~F~ge~s~~~~~~ss~-~~~ 261 (369)
.++-+.+|+-..+++.+.|||.+.+.|+... ++|+|.+|++.|..| | ..+..+.+|.+|||.+-..-..+.. ...
T Consensus 319 e~~lL~elVLklk~qvfSPgDyICrKGdvgk--EMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRR 396 (536)
T KOG0500|consen 319 EAGLLVELVLKLKPQVFSPGDYICRKGDVGK--EMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRR 396 (536)
T ss_pred chhHHHHHHHHhcceeeCCCCeEEecCcccc--eEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcc
Confidence 3455566666778999999999999999866 699999999999885 5 5788899999999988665443333 357
Q ss_pred eeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHH
Q psy12113 262 QVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFN 296 (369)
Q Consensus 262 qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~ 296 (369)
++++.-+.-|.+.+.+|+|+.+.+..+|.=...+.
T Consensus 397 tanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 397 TANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred eeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 89999999999999999999999999998777655
No 23
>KOG0501|consensus
Probab=98.01 E-value=2.7e-06 Score=88.64 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=96.3
Q ss_pred CHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeE
Q psy12113 185 SKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVS 264 (369)
Q Consensus 185 s~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvT 264 (369)
|++-++.|+-..+...-.+||.+.+-|+. .| .|.||++|.+.|.+|++.+.+++.|+-||..=|-++ +-+.-.+.
T Consensus 560 SDGCLRaLAm~f~~~H~APGDLlYHtGES-vD-aLcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~~---t~~qs~AN 634 (971)
T KOG0501|consen 560 SDGCLRALAMEFQTNHCAPGDLLYHTGES-VD-ALCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKEN---TLGQSAAN 634 (971)
T ss_pred cchhHHHHHHHHHhccCCCcceeeecCCc-cc-eEEEEEecceEEeecCcEEEEeecCccchhHHhhhh---hhhhhhhh
Confidence 78889999999999999999999999995 88 999999999999999999999999999999888764 22334478
Q ss_pred EEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHH
Q psy12113 265 ITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSL 298 (369)
Q Consensus 265 i~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~l 298 (369)
+.|++-|.+-.|.|++|.+.++=+..++.-|...
T Consensus 635 VRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRN 668 (971)
T KOG0501|consen 635 VRALTYCDLHMIKRDKLLKVLDFYTAFANSFARN 668 (971)
T ss_pred hhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999888887776543
No 24
>KOG2968|consensus
Probab=97.78 E-value=2.8e-05 Score=84.53 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=89.7
Q ss_pred HHHhc-cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---Ce--EEEEecCCeeeeccccccccCCCCCcceeE
Q psy12113 191 ELTSE-ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DT--HLHYVCPFQFVDSPEYMSCQNSSDELYQVS 264 (369)
Q Consensus 191 ~L~~~-~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~--~l~~i~pg~F~ge~s~~~~~~ss~~~~qvT 264 (369)
+.++. ..|..+++|+.++++|+. .| .+|+|++|++|-..+ |+ ++.-.+.|+.+|+.|..+.++... |
T Consensus 502 r~~D~AldWv~l~~g~alyrqgD~-Sd-~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~t-----T 574 (1158)
T KOG2968|consen 502 RKLDFALDWVRLEPGQALYRQGDS-SD-SIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRAT-----T 574 (1158)
T ss_pred hhhhhhcceEEeccccHHHhcCCc-cC-cEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccc-----e
Confidence 33443 699999999999999996 67 899999999996542 33 667779999999999999888775 9
Q ss_pred EEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHH
Q psy12113 265 ITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGK 301 (369)
Q Consensus 265 i~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligk 301 (369)
+.|+-++++..+|..-|..+..++|++...+.+++++
T Consensus 575 v~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~ 611 (1158)
T KOG2968|consen 575 VMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAE 611 (1158)
T ss_pred EEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999887777655
No 25
>KOG1113|consensus
Probab=97.57 E-value=0.00012 Score=72.66 Aligned_cols=111 Identities=13% Similarity=0.191 Sum_probs=91.1
Q ss_pred CHHHHHHHHhhcCCCCC----CHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--CCeEEEEecC
Q psy12113 168 SIELTELYIRVFNPVKI----SKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--NDTHLHYVCP 241 (369)
Q Consensus 168 ~~e~~~lY~~lF~pL~l----s~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~g~~l~~i~p 241 (369)
..-.+.+|...-+...+ ...+..++++.-....+++|+.+.++|+ +.| .+|+|.+|.+.|.. +|..+ -+.+
T Consensus 231 ~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~-~ge-~f~~i~eGEvdv~~~~~~v~v-kl~~ 307 (368)
T KOG1113|consen 231 CIKKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGD-QGE-HFYIIEEGEVDVLKKRDGVEV-KLKK 307 (368)
T ss_pred chhhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccC-Ccc-eEEEecccccchhhccCCeEE-Eech
Confidence 44566677665443321 3456677888888999999999999999 577 89999999999986 45555 7999
Q ss_pred CeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHh
Q psy12113 242 FQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLR 286 (369)
Q Consensus 242 g~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~ 286 (369)
||.|||.++..+.|..+ |+.|.++..+...++..|++|+.
T Consensus 308 ~dyfge~al~~~~pr~A-----tv~a~~~~kc~~~dk~~ferllg 347 (368)
T KOG1113|consen 308 GDYFGELALLKNLPRAA-----TVVAKGRLKCAKLDKPRFERLLG 347 (368)
T ss_pred hhhcchHHHHhhchhhc-----eeeccCCceeeeeChHHHHHHhh
Confidence 99999999999888764 99999999999999999999986
No 26
>KOG0499|consensus
Probab=97.47 E-value=0.0014 Score=69.09 Aligned_cols=113 Identities=10% Similarity=0.151 Sum_probs=93.6
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--C-CeEEEEecCCeeeecccccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--N-DTHLHYVCPFQFVDSPEYMSCQ 254 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~-g~~l~~i~pg~F~ge~s~~~~~ 254 (369)
||++ ..++-++.++-.-+...+-+||.+...|+... .+|+|..|.+.|.- + ..++..+..|.-|||.|...-
T Consensus 534 LFq~--Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGk--EMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLai- 608 (815)
T KOG0499|consen 534 LFQG--CDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGK--EMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLAI- 608 (815)
T ss_pred Hhhh--hHHHHHHHHHHHhhceeecCCceeeecccccc--eeEEeecceEEEecCCCCCEEEEEecccceeeeeeeeee-
Confidence 3553 24555666666677788899999999999865 69999999999986 3 459999999999999998862
Q ss_pred CCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHH
Q psy12113 255 NSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFN 296 (369)
Q Consensus 255 ~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~ 296 (369)
.++....+++.|-.-|.+++.++++|++.+..+|.=.++++
T Consensus 609 -gG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLr 649 (815)
T KOG0499|consen 609 -GGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILR 649 (815)
T ss_pred -cCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHH
Confidence 23345678999999999999999999999999999888654
No 27
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.40 E-value=0.0081 Score=56.25 Aligned_cols=121 Identities=9% Similarity=0.090 Sum_probs=83.8
Q ss_pred HHHHHHHh----ccEEEEecCCCeE-EecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccccccccCCCCCc
Q psy12113 187 KQFKELTS----EATICKLAQGESY-AIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPEYMSCQNSSDEL 260 (369)
Q Consensus 187 ~qf~~L~~----~~~~r~L~kGe~l-~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s~~~~~~ss~~~ 260 (369)
+|+.+|.+ .+++.++++|..+ ..+..-. + .++++++|.+.+.+ ||-.+.....-..+|-..-... ..
T Consensus 9 ~~~~~L~~~L~~~g~~~~~~~~~~~i~~~~~~~-~-~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~~-----~~ 81 (207)
T PRK11832 9 QEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNN-E-DTFVILEGVISLRREENVLIGITQAPYIMGLADGLMK-----ND 81 (207)
T ss_pred HHHHHHHHHhhccCCeEecCCCcEEeccccCCC-c-eEEEEEeceEEEEecCCeEEEeccCCeEeecccccCC-----CC
Confidence 66666554 5899999999997 4332222 3 69999999999965 3556666666667776554331 11
Q ss_pred ceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12113 261 YQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIST 316 (369)
Q Consensus 261 ~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~ 316 (369)
....+.|+++|++..++++++.++++++.=|..+...+. . ..++++..++.+.+
T Consensus 82 ~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~~~l~-~-~~~~l~~rd~~l~g 135 (207)
T PRK11832 82 IPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLA-W-QNRILELRDVQLIG 135 (207)
T ss_pred ceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHHHHHH-H-HHHHHHHHHHHHhc
Confidence 236899999999999999999999999887766655333 2 35555555554443
No 28
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=94.38 E-value=0.35 Score=36.02 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=49.1
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
..++++|+..-..-....+ .+++|++|.+.+..+|+.. .+.||+.+--++- ..+.+.....++|+++.+
T Consensus 2 ~~~~~pG~~~~~h~H~~~~-e~~~vl~G~~~~~~~~~~~-~l~~Gd~~~i~~~--------~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGED-EFFYVLSGEGTLTVDGERV-ELKPGDAIYIPPG--------VPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEETTEEEEEEEESSEE-EEEEEEESEEEEEETTEEE-EEETTEEEEEETT--------SEEEEEEESSSEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCC-EEEEEEECCEEEEEccEEe-EccCCEEEEECCC--------CeEEEEECCCCCEEEEEE
Confidence 3578899877776654333 6999999999999888854 6899998876552 234445555667777654
No 29
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=91.94 E-value=0.48 Score=45.25 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=56.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCC----CcceeEEEeeCCe
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSD----ELYQVSITAEEDC 271 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~----~~~qvTi~A~edc 271 (369)
++..+|++|+.+..+-.. .+ +...+++|++.|+.+|.+++-|+.. ++-|+..|+-. .--.++++|.+++
T Consensus 31 F~~~~L~~Ges~~~~~~~-~E-~clV~v~Gk~~vs~~g~~f~~iG~R-----~SvFe~~p~~~vYvp~g~~~~vtA~t~~ 103 (270)
T COG3718 31 FRLLRLAAGESATEETGD-RE-RCLVLVTGKATVSAHGSTFGEIGTR-----MSVFERKPPDSVYVPAGSAFSVTATTDL 103 (270)
T ss_pred EEEEEccCCCcccccCCC-ce-EEEEEEeeeEEEeeccchHhhcccc-----cccccCCCCCeEEecCCceEEEEeecce
Confidence 467889999999888775 44 8999999999999999998777642 56666554211 0112688899999
Q ss_pred EEEEEeHH
Q psy12113 272 LYLCWSRI 279 (369)
Q Consensus 272 rvl~w~r~ 279 (369)
++-.=+..
T Consensus 104 ~vAvC~AP 111 (270)
T COG3718 104 EVAVCSAP 111 (270)
T ss_pred EEEEEeCC
Confidence 98766543
No 30
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.06 E-value=2.4 Score=36.27 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=44.0
Q ss_pred ccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 195 EATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 195 ~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
..+...+++|+-+..+-....| ..++|++|+.+|..+|+.+ .+++||.+--|.
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~d-E~~~Vl~G~g~v~~~~~~~-~v~~gd~~~iP~ 89 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRD-EHWYVLEGTGKVTIGGEEV-EVKAGDSVYIPA 89 (127)
T ss_pred EEEEEEECCCcccCcccccCcc-eEEEEEeeEEEEEECCEEE-EecCCCEEEECC
Confidence 4677889999998777666556 7999999999999998877 589998887665
No 31
>PRK11171 hypothetical protein; Provisional
Probab=82.60 E-value=7.7 Score=37.52 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=47.8
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
...++++|............+.+.+|++|++.+..+|+. +.+.+|+.+--++- ......-...++|+++.+
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~-~~L~~GDsi~~p~~--------~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKT-HALSEGGYAYLPPG--------SDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEE-EEECCCCEEEECCC--------CCEEEEECCCCCEEEEEE
Confidence 345688887654444332212799999999999998886 57999988865542 112222234678898887
Q ss_pred e
Q psy12113 277 S 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 135 ~ 135 (266)
T PRK11171 135 R 135 (266)
T ss_pred E
Confidence 4
No 32
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=81.67 E-value=11 Score=32.34 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=45.2
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEE-eC-CeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVT-CN-DTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~-~~-g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
.++++|+..-..-.. .+ .+++|++|++++. .+ |+. +.+.||+.+--++-. +..+.+.+++++++.
T Consensus 40 ~~l~pG~~~~~h~h~-~~-E~~yVL~G~~~~~~i~~g~~-~~L~aGD~i~~~~~~----------~H~~~N~e~~~~l~v 106 (125)
T PRK13290 40 TTIYAGTETHLHYKN-HL-EAVYCIEGEGEVEDLATGEV-HPIRPGTMYALDKHD----------RHYLRAGEDMRLVCV 106 (125)
T ss_pred EEECCCCcccceeCC-CE-EEEEEEeCEEEEEEcCCCEE-EEeCCCeEEEECCCC----------cEEEEcCCCEEEEEE
Confidence 478888755332221 23 6999999999999 65 665 579999987655411 134555689999876
Q ss_pred e
Q psy12113 277 S 277 (369)
Q Consensus 277 ~ 277 (369)
-
T Consensus 107 ~ 107 (125)
T PRK13290 107 F 107 (125)
T ss_pred E
Confidence 4
No 33
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=78.36 E-value=13 Score=32.24 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=49.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe-----EEEEecCCeeeeccccccccCCCCCcceeEEEeeCC
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDT-----HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEED 270 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~-----~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~ed 270 (369)
+...++++|..+...-.+..+ .+++|++|..++..+++ ..+.+.+|+.+--+.... +.......++
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~-e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~--------H~~~n~~~~~ 102 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRAT-ELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHP--------HFQVNSGDEN 102 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCC-EEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCE--------EEEEcCCCCC
Confidence 456678999987655543244 79999999999987432 577899999887665321 1112223467
Q ss_pred eEEEEEeHH
Q psy12113 271 CLYLCWSRI 279 (369)
Q Consensus 271 crvl~w~r~ 279 (369)
+++++++-.
T Consensus 103 ~~~l~~~~~ 111 (146)
T smart00835 103 LEFVAFNTN 111 (146)
T ss_pred EEEEEEecC
Confidence 888876544
No 34
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=78.24 E-value=12 Score=36.09 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=43.9
Q ss_pred EEEecCCCeEEecC-CcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 198 ICKLAQGESYAIEE-RTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 198 ~r~L~kGe~l~~EG-~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
..++++|....... ....+ ++.+|++|++.+..+|+.. .+.||+++--++- ......-...++|+++..
T Consensus 62 ~v~l~pgg~~~~~~~~~g~e-e~iyVl~G~l~v~~~g~~~-~L~~Gd~~y~pa~--------~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 62 IVEVHPGGGNTTGFGGEGIE-TFLFVISGEVNVTAEGETH-ELREGGYAYLPPG--------SKWTLANAQAEDARFFLY 131 (260)
T ss_pred EEEECCCCcCCCCCCCCceE-EEEEEEeCEEEEEECCEEE-EECCCCEEEECCC--------CCEEEEECCCCCEEEEEE
Confidence 44677765432211 11124 7999999999999888874 7999988865551 122222234567887765
Q ss_pred e
Q psy12113 277 S 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 132 ~ 132 (260)
T TIGR03214 132 K 132 (260)
T ss_pred E
Confidence 5
No 35
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=77.96 E-value=6.8 Score=38.03 Aligned_cols=78 Identities=23% Similarity=0.239 Sum_probs=50.0
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCC-eEEEEecCCeeeec-cccccccCCCCCcceeEEEeeCCeEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCND-THLHYVCPFQFVDS-PEYMSCQNSSDELYQVSITAEEDCLY 273 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g-~~l~~i~pg~F~ge-~s~~~~~~ss~~~~qvTi~A~edcrv 273 (369)
....+|++|+.+..+-+. .+ ...++++|.++|..+| .......-.+-|+. +....-...+ .++++|.++|++
T Consensus 29 ~~~l~L~~g~~~~~~~~~-~E-~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~----~~~i~a~~~ae~ 102 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELER-RE-LGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGT----KVVIFASTDAEF 102 (261)
T ss_dssp CCCEEEECCHCCCCCCCS-EE-EEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT------EEEEESSTEEE
T ss_pred eEEEEecCCCEEeccCCC-cE-EEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCC----eEEEEEcCCCEE
Confidence 356789999999887543 33 7888999999999998 44443433333433 3322221112 378999999999
Q ss_pred EEEeHH
Q psy12113 274 LCWSRI 279 (369)
Q Consensus 274 l~w~r~ 279 (369)
...+-.
T Consensus 103 ~~~sap 108 (261)
T PF04962_consen 103 AVCSAP 108 (261)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 877643
No 36
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=76.59 E-value=14 Score=33.38 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=42.6
Q ss_pred EecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 200 KLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 200 ~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
++++|......-..+.+ .+.+|++|.+.+..+|+.. .+.+||.+-=++ +.+. . ......++|+++.+.
T Consensus 113 ~~~pg~~~~~~~~h~~~-E~~~Vl~G~~~~~~~~~~~-~l~~Gd~~~~~~---~~~H---~--~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 113 TYQPGTTTGERIKHQGE-EIGTVLEGEIVLTINGQDY-HLVAGQSYAINT---GIPH---S--FSNTSAGICRIISAH 180 (185)
T ss_pred EccCCCCcccccccCCc-EEEEEEEeEEEEEECCEEE-EecCCCEEEEcC---CCCe---e--eeCCCCCCeEEEEEe
Confidence 56677654322233344 7999999999999988764 699998775443 1111 1 122345677777764
No 37
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=70.46 E-value=19 Score=36.31 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=55.2
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
+.+++|..-..--.+.. .+|.|++|.-++..+|+.+. ..+||+|--|+|-. ++..|.+|+.++..+-
T Consensus 255 q~L~~G~~t~~~r~T~s--~Vf~VieG~G~s~ig~~~~~-W~~gD~f~vPsW~~----------~~h~a~~da~Lf~~~D 321 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDA--TVFCVVEGRGQVRIGDAVFR-FSPKDVFVVPSWHP----------VRFEASDDAVLFSFSD 321 (335)
T ss_pred hccCCCCCCCCcccccc--EEEEEEeCeEEEEECCEEEE-ecCCCEEEECCCCc----------EecccCCCeEEEEecC
Confidence 45566665555555543 79999999999999999874 78999999999843 3445667888888887
Q ss_pred HHHHHHH
Q psy12113 279 ISLDRLL 285 (369)
Q Consensus 279 ~~L~~Ll 285 (369)
.-+.+-+
T Consensus 322 ~Pll~~L 328 (335)
T TIGR02272 322 RPVQQKL 328 (335)
T ss_pred HHHHHHh
Confidence 7666544
No 38
>PRK11171 hypothetical protein; Provisional
Probab=69.98 E-value=31 Score=33.35 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=48.2
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
....++++|..+-.+..... ++.++|++|+..+..+|+.. .+.+||.+-=++.. ...| .-.-.++|+++.
T Consensus 186 ~~~~~l~PG~~~~~~~~~~~-ee~i~Vl~G~~~~~~~~~~~-~l~~GD~i~~~~~~------~h~~--~N~g~~~~~yl~ 255 (266)
T PRK11171 186 VNIVTFEPGASIPFVETHVM-EHGLYVLEGKGVYRLNNDWV-EVEAGDFIWMRAYC------PQAC--YAGGPGPFRYLL 255 (266)
T ss_pred EEEEEECCCCEEccCcCCCc-eEEEEEEeCEEEEEECCEEE-EeCCCCEEEECCCC------CEEE--ECCCCCcEEEEE
Confidence 44567999999888544333 48999999999999777655 68999887643311 1112 222357788876
Q ss_pred E
Q psy12113 276 W 276 (369)
Q Consensus 276 w 276 (369)
.
T Consensus 256 ~ 256 (266)
T PRK11171 256 Y 256 (266)
T ss_pred E
Confidence 5
No 39
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=64.45 E-value=46 Score=26.39 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=43.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
....++++|..+-...... . ...+|++|.+.- ++.. ..+|+|+=.|.-. ..+..+.++|.++.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g-~-ee~~VLeG~~~d--~~~~---~~~G~~~~~p~g~----------~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPG-G-EEILVLEGELSD--GDGR---YGAGDWLRLPPGS----------SHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS---EEEEEEECEEEE--TTCE---EETTEEEEE-TTE----------EEEEEESSCEEEEE
T ss_pred EEEEEECCCCCcCccCCCC-c-EEEEEEEEEEEE--CCcc---CCCCeEEEeCCCC----------ccccCcCCCEEEEE
Confidence 4567789999998877653 3 578999999883 2222 2899998876621 25677899999875
No 40
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=63.47 E-value=14 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.8
Q ss_pred cceEEEEEeceEEEEeC-CeEEEEecCCeeeeccc
Q psy12113 216 DERLSILLRGKMTVTCN-DTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 216 d~~L~lVlsG~vrV~~~-g~~l~~i~pg~F~ge~s 249 (369)
| .+.+|++|.++++.+ |.. +.+.||+.+--|.
T Consensus 26 ~-E~~~vleG~v~it~~~G~~-~~~~aGD~~~~p~ 58 (74)
T PF05899_consen 26 D-EFFYVLEGEVTITDEDGET-VTFKAGDAFFLPK 58 (74)
T ss_dssp E-EEEEEEEEEEEEEETTTEE-EEEETTEEEEE-T
T ss_pred C-EEEEEEEeEEEEEECCCCE-EEEcCCcEEEECC
Confidence 5 799999999999984 666 6799999886655
No 41
>PHA00672 hypothetical protein
Probab=61.96 E-value=20 Score=31.31 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=51.2
Q ss_pred ccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEE
Q psy12113 195 EATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYL 274 (369)
Q Consensus 195 ~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl 274 (369)
.++..+++||..++-.=.. .| .+ ++.||.+.|+.||.....-+|+-..+++.-- ++ -.|-+|+...
T Consensus 48 YARei~IPkGt~LtG~~hk-f~-~~-ii~sG~itV~tdge~~rl~g~~~i~~~aG~K----------ra-gyAHeDT~wt 113 (152)
T PHA00672 48 YARTIRIPAGVALTGALIK-VS-TV-LIFSGHATVFIGGEAVELRGYHVIPASAGRK----------QA-FVAHADTDLT 113 (152)
T ss_pred eEEEEeccCceeeeeeeeE-ee-EE-EEecccEEEEeCCcEEEEecceeeecCCCcc----------cc-eeeeccceEE
Confidence 3678889999888744443 33 67 9999999999999999888887666655411 11 1367777777
Q ss_pred EEeHHH
Q psy12113 275 CWSRIS 280 (369)
Q Consensus 275 ~w~r~~ 280 (369)
++....
T Consensus 114 ~~h~se 119 (152)
T PHA00672 114 MLFPSE 119 (152)
T ss_pred EEeccc
Confidence 776543
No 42
>KOG3542|consensus
Probab=60.00 E-value=26 Score=38.58 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=53.5
Q ss_pred cCCCeEEecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHH
Q psy12113 202 AQGESYAIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRIS 280 (369)
Q Consensus 202 ~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~ 280 (369)
.+|.++...|+. -| .-|.|+.|++.|.+ +|+...+.-.+.|=.+|..... -..+ .-=+-+.||.++++-..+
T Consensus 311 ~AGtivL~dgee-LD-SWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT~dkq-ym~G----~mRTkVDDCqFVciaqqD 383 (1283)
T KOG3542|consen 311 DAGTIVLADGEE-LD-SWSVILNGCVEVVKPDGKREELKMGNSFGAEPTPDKQ-YMIG----EMRTKVDDCQFVCIAQQD 383 (1283)
T ss_pred hcCeEEecCCcc-cc-eeEEEecceEEEecCCCceEEeecccccCCCCCcchh-hhhh----hhheecccceEEEeehhh
Confidence 589999999996 56 89999999999998 6775543333333334543221 1111 123467899999999998
Q ss_pred HHHHHhc
Q psy12113 281 LDRLLRH 287 (369)
Q Consensus 281 L~~Ll~~ 287 (369)
+-+++.+
T Consensus 384 ycrIln~ 390 (1283)
T KOG3542|consen 384 YCRILNT 390 (1283)
T ss_pred HHHHHHH
Confidence 8877654
No 43
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=59.91 E-value=23 Score=29.83 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=41.9
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
....+++||+..-.--.+..+ ...+|++|++++..+|+.. .+.+|+++-.|.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~-~~~~Vl~G~~~~~~~g~~~-~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGE-QTIYVLEGEGTVQLEGEKK-ELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcc-eEEEEEecEEEEEecCCce-EecCCCEEEECC
Confidence 345679999999888885355 7999999999999995544 689999998766
No 44
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=59.53 E-value=47 Score=35.10 Aligned_cols=71 Identities=8% Similarity=-0.000 Sum_probs=45.7
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
...++++|...-.+-....+ ...+|++|++.+..+|+.. .+.|||.+--|+- .+....-...++++++..
T Consensus 388 ~~i~v~PG~~~~~~~H~~~~-E~~~VlsG~~~v~idg~~~-~L~~GDSi~ip~g--------~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 388 KRITVKPGEGLSVQMHHHRA-EHWVVVAGTAKVTIDGDIK-LLGENESIYIPLG--------ATHCLENPGKIPLDLIEV 457 (478)
T ss_pred EEEEECCCCcCCcCCCCCCc-eEEEEEeeEEEEEECCEEE-EecCCCEEEECCC--------CcEEEEcCCCCCEEEEEE
Confidence 45578898855333333334 5888999999999999875 7999988765541 111122223466776665
Q ss_pred e
Q psy12113 277 S 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 458 ~ 458 (478)
T PRK15460 458 R 458 (478)
T ss_pred E
Confidence 4
No 45
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=55.43 E-value=50 Score=31.61 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=47.4
Q ss_pred EEe-cCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 199 CKL-AQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 199 r~L-~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
.++ +.|..=.-|++...+ ++-||+||.+.|..+|++. .+.+|.+.=-|. +..++++-.+-+|+|+-.+.
T Consensus 66 ve~~p~GGs~~~e~d~~ae-~~lfVv~Ge~tv~~~G~th-~l~eggyaylPp--------gs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 66 VELHPNGGSQRPEGDEGAE-TFLFVVSGEITVKAEGKTH-ALREGGYAYLPP--------GSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred EEECCCCCCCCCCCCCcce-EEEEEEeeeEEEEEcCeEE-EeccCCeEEeCC--------CCcceEeeccCCceEEEEEe
Confidence 345 344355566665565 8999999999999999875 577887765443 22344455578888876654
Q ss_pred H
Q psy12113 278 R 278 (369)
Q Consensus 278 r 278 (369)
|
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 4
No 46
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=53.58 E-value=67 Score=33.61 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=44.4
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
...++++|...-..=....+ ..++|++|.+++..+|+.. .+.||+.+--|+- ......-...++++++..
T Consensus 379 ~~~~i~PG~~~~~h~H~~~~-E~~~Vl~G~~~v~~dg~~~-~l~~GDsi~ip~~--------~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 379 KRITVKPGEKLSLQMHHHRA-EHWIVVSGTARVTIGDETL-LLTENESTYIPLG--------VIHRLENPGKIPLELIEV 448 (468)
T ss_pred EEEEECCCCccCccccCCCc-eEEEEEeeEEEEEECCEEE-EecCCCEEEECCC--------CcEEEEcCCCCCEEEEEE
Confidence 44567888754322222233 4678999999999999875 7999988765541 112222233566776665
Q ss_pred e
Q psy12113 277 S 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 449 ~ 449 (468)
T TIGR01479 449 Q 449 (468)
T ss_pred E
Confidence 4
No 47
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=51.70 E-value=41 Score=30.25 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=41.4
Q ss_pred eehhHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhhC
Q psy12113 114 LRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFL 163 (369)
Q Consensus 114 l~~r~~v~vG~~~~~~w~~~~~c~~D~~~Wn~lf~~iN~~~~~~L~~~~r 163 (369)
+..|+...+|+.|..+++... -.+....=+.+++.+|++.+..+..+++
T Consensus 114 ~~mR~~~l~~~~~w~~~n~~i-gS~~g~l~e~~~~~~n~~~i~R~~~~~~ 162 (163)
T PF10688_consen 114 IKMRILMLVGTLCWLIYNILI-GSWGGTLMEALFIISNLITIYRLYRTKK 162 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 568999999999999999876 4566777799999999999998876554
No 48
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=51.64 E-value=46 Score=29.61 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=41.1
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeecc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSP 248 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~ 248 (369)
.+...+.||+.+..+-....+ ....|++|.++|+.+|+.. .+.+|+-+-=|
T Consensus 65 vkri~V~pG~~lSlq~H~~R~-E~W~Vv~G~a~v~~~~~~~-~~~~g~sv~Ip 115 (151)
T PF01050_consen 65 VKRITVNPGKRLSLQYHHHRS-EHWTVVSGTAEVTLDDEEF-TLKEGDSVYIP 115 (151)
T ss_pred EEEEEEcCCCccceeeecccc-cEEEEEeCeEEEEECCEEE-EEcCCCEEEEC
Confidence 466779999999999877776 7999999999999988766 47777765433
No 49
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=49.11 E-value=92 Score=31.68 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=48.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---Ce-EEEEecCCeeeeccccccccCCCCCcceeEEEe--eC
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EE 269 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~e 269 (369)
+...++++|+..-.-=....+ +++++++|++++..+ |+ ....+.||+.+--|.-. .+.++. .+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~-E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~----------~H~i~N~G~e 315 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNAD-EWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNM----------GHYVENTGDE 315 (367)
T ss_pred EEEEEECCCCccCCeeCcCCC-eEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCC----------eEEEEECCCC
Confidence 456678888877665555455 799999999999862 22 44579999877655411 134443 46
Q ss_pred CeEEEEEeH
Q psy12113 270 DCLYLCWSR 278 (369)
Q Consensus 270 dcrvl~w~r 278 (369)
+++++++-.
T Consensus 316 ~l~fL~if~ 324 (367)
T TIGR03404 316 TLVFLEVFK 324 (367)
T ss_pred CEEEEEEEC
Confidence 888888733
No 50
>KOG3542|consensus
Probab=43.73 E-value=56 Score=36.17 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=66.7
Q ss_pred CCCCC--CHHHHHHHHhh-----cCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeE
Q psy12113 163 LPPAL--SIELTELYIRV-----FNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTH 235 (369)
Q Consensus 163 r~~~~--~~e~~~lY~~l-----F~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~ 235 (369)
+|+.| +.+.+.+|+.+ |+.|- .++++.+.+.++-.+.+...+++..|+.+. .-|++++|.+-| .|++
T Consensus 22 k~~~~~t~~~~rN~~~~lh~ld~~snl~--~~~lk~l~~~aryer~~g~~ilf~~~~var--~wyillsgsv~v--~gqi 95 (1283)
T KOG3542|consen 22 KPPHLRTPDDIRNVYEQLHQLDTFSNLF--IGPLKALCKTARYERHPGQYILFRDGDVAR--SWYILLSGSVFV--EGQI 95 (1283)
T ss_pred CCcccCChhhhhhHHHHHhhhhhhhhhh--hhhHHHhhhhhhhhcCCCceEEecccchhh--heeeeeccceEe--ecce
Confidence 44444 34444444432 56553 478888888899899999999999999866 799999998755 4554
Q ss_pred EEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 236 LHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 236 l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
. +.+|- ||- ..+++..+..-.++++++++++.
T Consensus 96 ~--mp~~~-fgk--------r~g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 96 Y--MPYGC-FGK--------RTGQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred e--cCccc-ccc--------ccccccccceeeecccceeeeec
Confidence 3 34442 232 22334446777888999998854
No 51
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=41.15 E-value=73 Score=29.35 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=40.2
Q ss_pred CcceEEEEEeceEEEEe--CCe-EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHH
Q psy12113 215 ADERLSILLRGKMTVTC--NDT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLD 282 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~--~g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~ 282 (369)
.| .++++++|.+++.. +|+ .--.+.+|+++=-|.-. +++-++.++|..+++-|+.-.
T Consensus 54 td-E~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gv----------pHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 54 GE-EFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHV----------PHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred Cc-eEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCC----------CcCCccCCCeEEEEEEeCCCC
Confidence 45 79999999999987 563 33468999988766522 134456778888888665433
No 52
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=38.25 E-value=99 Score=25.27 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=42.1
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee-CCeEEEEEe
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE-EDCLYLCWS 277 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~-edcrvl~w~ 277 (369)
..+++|..+...-...-. .+-++++|.+++--+. ..+.+++.+--. ... .++++|. ++|+++.+.
T Consensus 4 i~l~~g~~~~~~~~~~~~-~~iyv~~G~~~v~~~~---~~~~~~~~~~l~------~g~----~i~~~a~~~~a~~lll~ 69 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHN-AFIYVLEGSVEVGGEE---DPLEAGQLVVLE------DGD----EIELTAGEEGARFLLLG 69 (104)
T ss_dssp EEE-TT-EEEEEEETT-E-EEEEEEESEEEETTTT---EEEETTEEEEE-------SEC----EEEEEESSSSEEEEEEE
T ss_pred EEECCCCEEEeecCCCCE-EEEEEEECcEEECCCc---ceECCCcEEEEC------CCc----eEEEEECCCCcEEEEEE
Confidence 467888888765332223 7999999998764333 456677655422 111 2578888 999999998
Q ss_pred HHHHHH
Q psy12113 278 RISLDR 283 (369)
Q Consensus 278 r~~L~~ 283 (369)
=+.|.+
T Consensus 70 GePl~E 75 (104)
T PF05726_consen 70 GEPLNE 75 (104)
T ss_dssp E----S
T ss_pred ccCCCC
Confidence 887774
No 53
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=36.79 E-value=1.5e+02 Score=23.93 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=29.8
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
..+|++|..==.+... .+.-.++|++|++.|+.++..+. +.+|+.+=-|+
T Consensus 16 ~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~~~~f~-v~~G~~F~VP~ 65 (85)
T PF11699_consen 16 MLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIHETSFV-VTKGGSFQVPR 65 (85)
T ss_dssp EEEE-TCCCEEEEE---SEEEEEEEEESEEEEEETTEEEE-EETT-EEEE-T
T ss_pred EEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEcCcEEE-EeCCCEEEECC
Confidence 4455555433222222 12158899999999999988774 77777765555
No 54
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=35.89 E-value=75 Score=29.76 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=47.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
....++++|..+-...... . .+.+|++|... |+.- ...+|+|+-.++-. ..+.++...++|.++.
T Consensus 129 v~Ll~i~pG~~~p~H~H~G-~-E~tlVLeG~f~---de~g--~y~~Gd~i~~p~~~--------~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 129 VRLLYIEAGQSIPQHTHKG-F-ELTLVLHGAFS---DETG--VYGVGDFEEADGSV--------QHQPRTVSGGDCLCLA 193 (215)
T ss_pred EEEEEECCCCccCCCcCCC-c-EEEEEEEEEEE---cCCC--ccCCCeEEECCCCC--------CcCcccCCCCCeEEEE
Confidence 3566788998888888853 3 68899999953 4332 25899998876632 2223333446699998
Q ss_pred EeHHHH
Q psy12113 276 WSRISL 281 (369)
Q Consensus 276 w~r~~L 281 (369)
..-..|
T Consensus 194 v~dapl 199 (215)
T TIGR02451 194 VLDAPL 199 (215)
T ss_pred EecCCc
Confidence 876554
No 55
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=34.97 E-value=69 Score=28.99 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=39.2
Q ss_pred CcceEEEEEeceEEEEe-C-Ce-EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHH
Q psy12113 215 ADERLSILLRGKMTVTC-N-DT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRIS 280 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~-~-g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~ 280 (369)
.| .++++++|.+.+-. + |+ -.-.+.+|+++=-|.-. +++-.+.++|..+++-|++
T Consensus 48 td-E~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gv----------pHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 48 GE-EFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHV----------PHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred Cc-eEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCC----------CcccccCCCcEEEEEEeCC
Confidence 35 79999999999965 3 43 23468999988766622 1345567888888887764
No 56
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=1.2e+02 Score=24.84 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=40.9
Q ss_pred ccccCccceeeeehhHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy12113 103 RTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALI 159 (369)
Q Consensus 103 ~tp~~~~ls~Ll~~r~~v~vG~~~~~~w~~~~~c~~D~~~Wn~lf~~iN~~~~~~L~ 159 (369)
++..+...| +..-.....|+++..+||.... ..++..||.+-+..|++-+.+-+
T Consensus 29 ktK~t~~Is--l~~fii~~ia~~lwliygILi~-~lPii~aN~i~~il~liIl~~kI 82 (89)
T COG4095 29 KTKNTASIS--LPMFIILNIALFLWLIYGILIN-DLPIIIANIISFILSLIILFYKI 82 (89)
T ss_pred hcccccccc--HHHHHHHHHHHHHHHHHHHHHc-cCcchhHHHHHHHHHHHHHHHHH
Confidence 344444444 4556677899999999999886 67799999999999988776644
No 57
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=33.27 E-value=1.5e+02 Score=25.10 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=41.1
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccH
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPML 291 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L 291 (369)
.+.+.++|.+++.++|+.. .+.||+++=-.. ...|.....+......+.+|++-|.+.+.....+
T Consensus 57 ~l~~~~~G~~~~~~~g~~~-~~~pg~~~l~d~--------~~~~~~~~~~~~~~~~l~ip~~~l~~~~~~~~~~ 121 (172)
T PF14525_consen 57 LLVLPLSGSARIEQGGREV-ELAPGDVVLLDP--------GQPYRLEFSAGCRQLSLRIPRALLERRLGAPLRF 121 (172)
T ss_pred EEEEEccCCEEEEECCEEE-EEcCCeEEEEcC--------CCCEEEEECCCccEEEEEECHHHhcCccCchhhc
Confidence 5677889999999998866 589998554322 1223223223334456788887777777664333
No 58
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.23 E-value=1.6e+02 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=29.3
Q ss_pred eEEEEEeceEEEEeCCe--EEEEecCCeeeeccccccccC
Q psy12113 218 RLSILLRGKMTVTCNDT--HLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~--~l~~i~pg~F~ge~s~~~~~~ 255 (369)
...+++||++++.+.++ .-...+||+||=-|.+.--+|
T Consensus 69 taIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp 108 (142)
T COG4101 69 TAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQP 108 (142)
T ss_pred EEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcc
Confidence 46789999999998755 334579999998888765444
No 59
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=32.50 E-value=74 Score=30.57 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=26.3
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
.+.++++|.+++..+|+.. .+.||+++=-|.
T Consensus 177 Ei~YVLEGe~~l~IdG~t~-~l~pGDvlfIPk 207 (233)
T PRK15457 177 EIDMVLEGELHVRHEGETM-IAKAGDVMFIPK 207 (233)
T ss_pred EEEEEEEeEEEEEECCEEE-EeCCCcEEEECC
Confidence 6899999999999998877 589998886554
No 60
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=31.66 E-value=71 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12113 142 VWNMILAVVNVSHAGALI 159 (369)
Q Consensus 142 ~Wn~lf~~iN~~~~~~L~ 159 (369)
.|..++++||++..++..
T Consensus 17 ~Wa~llLaINflVAayYF 34 (37)
T PF08078_consen 17 GWALLLLAINFLVAAYYF 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 599999999999887653
No 61
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=30.32 E-value=96 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.0
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeee
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVD 246 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~g 246 (369)
.+.++++|...+..+|+.. .+.||+++=
T Consensus 25 ~i~~v~~G~~~~~~~~~~~-~l~~g~~~l 52 (136)
T PF02311_consen 25 EIIYVLSGEGTLHIDGQEY-PLKPGDLFL 52 (136)
T ss_dssp EEEEEEEE-EEEEETTEEE-EE-TT-EEE
T ss_pred EEEEEeCCEEEEEECCEEE-EEECCEEEE
Confidence 6999999999999888875 588887774
No 62
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=29.06 E-value=2.8e+02 Score=22.98 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=40.8
Q ss_pred EecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe-EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 200 KLAQGESYAIEERTSADERLSILLRGKMTVTCNDT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 200 ~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
...||+.=+--++. ...=|++|.+.|...|. .-....+|+.|.=|+ ...| .+++.+++.|+|
T Consensus 29 Vm~pGeY~F~T~~~----E~M~vvsG~l~V~lpg~~ew~~~~aGesF~Vpa--------nssF--~v~v~~~~~Y~C 91 (94)
T PF06865_consen 29 VMLPGEYTFGTSAP----ERMEVVSGELEVKLPGEDEWQTYSAGESFEVPA--------NSSF--DVKVKEPTAYLC 91 (94)
T ss_dssp EE-SECEEEEESS-----EEEEEEESEEEEEETT-SS-EEEETT-EEEE-T--------TEEE--EEEESS-EEEEE
T ss_pred EEeeeEEEEcCCCC----EEEEEEEeEEEEEcCCCcccEEeCCCCeEEECC--------CCeE--EEEECcceeeEE
Confidence 46788877766663 48889999999998766 456678888887655 2233 677788888876
No 63
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=27.57 E-value=1.6e+02 Score=26.78 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=24.9
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeecc
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSP 248 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~ 248 (369)
.+-+|++|++.|..+|+++ .-+||+.+--|
T Consensus 120 e~d~VlEGrL~V~~~g~tv-~a~aGDvifiP 149 (176)
T COG4766 120 EIDYVLEGRLHVRIDGRTV-IAGAGDVIFIP 149 (176)
T ss_pred ceeEEEeeeEEEEEcCCeE-ecCCCcEEEec
Confidence 5889999999999999887 57888876543
No 64
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=27.52 E-value=1.6e+02 Score=28.24 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=38.6
Q ss_pred ccEEEEecCCCeEE-ecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 195 EATICKLAQGESYA-IEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 195 ~~~~r~L~kGe~l~-~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...+.++++|..+- .+=.. +++-++|++|+..+.-||+.. -+.+|+++=-++
T Consensus 180 ~~~~~~~~PG~~~~~~~~H~--~eh~~yiL~G~G~~~~~g~~~-~V~~GD~i~i~~ 232 (260)
T TIGR03214 180 NVHILSFEPGASHPYIETHV--MEHGLYVLEGKGVYNLDNNWV-PVEAGDYIWMGA 232 (260)
T ss_pred EEEEEEECCCcccCCccccc--ceeEEEEEeceEEEEECCEEE-EecCCCEEEECC
Confidence 45668899999984 33332 237899999999998777765 589998876554
No 65
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.71 E-value=4.1e+02 Score=22.44 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=40.0
Q ss_pred eehhHHHHHHHHHHHHHhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHhhCCCCCC-----HHHHHHH--------Hhhc
Q psy12113 114 LRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMI-LAVVNVSHAGALISIFLPPALS-----IELTELY--------IRVF 179 (369)
Q Consensus 114 l~~r~~v~vG~~~~~~w~~~~~c~~D~~~Wn~l-f~~iN~~~~~~L~~~~r~~~~~-----~e~~~lY--------~~lF 179 (369)
+-|=....+|.+.+...-+.-.-+.++=.|.-+ ++++-+..+.-.++|--.-+++ ++.++.| ++=|
T Consensus 8 ~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~~~~lqkRl 87 (104)
T PF11460_consen 8 LIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLTNEELQKRL 87 (104)
T ss_pred eecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444455556655554433332223445567644 3344444444444444444443 3334444 2336
Q ss_pred CCCCCCHHHHHHHHhc
Q psy12113 180 NPVKISKKQFKELTSE 195 (369)
Q Consensus 180 ~pL~ls~~qf~~L~~~ 195 (369)
..| ||+|.++|.+.
T Consensus 88 e~l--~~eE~~~L~~e 101 (104)
T PF11460_consen 88 EEL--SPEELEALQAE 101 (104)
T ss_pred HhC--CHHHHHHHHHH
Confidence 655 78888887764
No 66
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.44 E-value=1.3e+02 Score=27.04 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=25.1
Q ss_pred cceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 216 DERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 216 d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
| .+.+|++|.+.+..+|+++ ...||+-+-=|.
T Consensus 96 D-Ei~~VlEG~L~i~~~G~~~-~A~~GDvi~iPk 127 (152)
T PF06249_consen 96 D-EIKYVLEGTLEISIDGQTV-TAKPGDVIFIPK 127 (152)
T ss_dssp E-EEEEEEEEEEEEEETTEEE-EEETT-EEEE-T
T ss_pred c-eEEEEEEeEEEEEECCEEE-EEcCCcEEEECC
Confidence 5 7999999999999999988 488988775443
No 67
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=23.80 E-value=1.9e+02 Score=27.58 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=36.0
Q ss_pred EEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHh
Q psy12113 219 LSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLR 286 (369)
Q Consensus 219 L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~ 286 (369)
+.++++|.+++..+|+.. .+.||+++--++ ...+........++..+.++++.+...+.
T Consensus 74 l~~~~~G~~~~~~~g~~~-~l~~G~~~l~~~--------~~p~~~~~~~~~~~~~l~i~~~~l~~~~~ 132 (302)
T PRK09685 74 TVFQLSGHAIIEQDDRQV-QLAAGDITLIDA--------SRPCSIYPQGLSEQISLLLPRELVEQYFP 132 (302)
T ss_pred EEEEecceEEEEECCeEE-EEcCCCEEEEEC--------CCCcEeecCCCceeEEEEccHHHhhcccC
Confidence 555689999999998876 579997764322 11111111112245567788888776543
No 68
>PF08743 Nse4_C: Nse4 C-terminal; InterPro: IPR014854 Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1 [].
Probab=22.73 E-value=73 Score=25.79 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=35.0
Q ss_pred EEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcC
Q psy12113 220 SILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHR 288 (369)
Q Consensus 220 ~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~ 288 (369)
++|-+|++++..++.-+..+.+. +.++ ... ..+ -.....--++.++.++++.++++.
T Consensus 27 FLVkdG~v~i~~d~~g~p~i~~~---~~~~-~~~-~~~-------~~~~~~q~I~~ld~~~W~~li~~~ 83 (93)
T PF08743_consen 27 FLVKDGRVKIEKDEDGLPVISPC---DPPE-SEE-QES-------DNDSRSQFILSLDYEDWQELIEKY 83 (93)
T ss_pred HHHhcCeEEEEECCCCCeeeccC---Cccc-hhh-hhc-------cCCCCceEEEEcCHHHHHHHHHHh
Confidence 46788999999976655566661 1111 110 111 112334458999999999998863
No 69
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=21.93 E-value=1.3e+02 Score=18.86 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH-hCCCCc
Q psy12113 37 ILAVVNVSHAGALISI-FLPPAL 58 (369)
Q Consensus 37 ~~~~~~~~~~~~l~~~-~r~~~~ 58 (369)
+..++-++=++||.|- +||.+|
T Consensus 3 l~~~v~~~L~~YL~~aLl~PErF 25 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLRPERF 25 (25)
T ss_pred HHHHHHHHHHHHHHHHHhCcccC
Confidence 3444555566788885 677765
No 70
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=20.98 E-value=2.3e+02 Score=24.80 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=43.2
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCc
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRP 289 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P 289 (369)
.+++|++|.=++..+++.++ ..||+++-.+.-. |.+.+.-.+|-..--=|-.+.++.+.+.+++.+.+
T Consensus 25 ~i~~vlQG~K~~~~g~~~~~-Y~~g~~lv~~~~l---Pv~~~v~~AS~~~P~l~l~l~ld~~~l~el~~~~~ 92 (155)
T PF06719_consen 25 SICIVLQGSKRVHLGDQVFE-YDAGQYLVSSVDL---PVESEVVEASPEEPYLALSLELDPALLAELVLELP 92 (155)
T ss_pred eEEEEEeeeEEEEECCceEE-ecCCcEEEecCCC---cEEEEEeeccCCCCEEEEEEEcCHHHHHHHHHhcc
Confidence 59999999999999988775 5777777653311 11111001111111236778889999999998744
No 71
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.42 E-value=2.6e+02 Score=28.50 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=36.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCeEE-EEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDTHL-HYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~~l-~~i~pg~F~ge~s 249 (369)
+...++++|...-.--.. .+ ++.++++|++++.. +|+.. ..+.|||.+-=|.
T Consensus 69 ~~~~~l~pG~~~~~HwH~-~~-E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHK-EA-EWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ceEEEEcCCCCCCcccCC-Cc-eEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECC
Confidence 456678888865433332 34 69999999999997 35543 4799998876554
Done!