Query psy12113
Match_columns 369
No_of_seqs 238 out of 391
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 19:05:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mdp_A Cyclic nucleotide-bindi 99.8 1.8E-17 6.1E-22 138.3 14.7 122 177-307 12-141 (142)
2 3gyd_A CNMP-BD protein, cyclic 99.7 5.6E-17 1.9E-21 144.2 17.0 133 178-319 46-183 (187)
3 3dn7_A Cyclic nucleotide bindi 99.7 1.2E-16 4.2E-21 141.0 18.3 142 176-330 12-160 (194)
4 2pqq_A Putative transcriptiona 99.7 9.6E-17 3.3E-21 134.6 15.6 130 177-319 11-145 (149)
5 3ukn_A Novel protein similar t 99.7 5.8E-17 2E-21 146.0 11.6 128 177-311 81-208 (212)
6 4f8a_A Potassium voltage-gated 99.7 5.6E-16 1.9E-20 132.0 16.2 116 177-299 33-148 (160)
7 2z69_A DNR protein; beta barre 99.7 1.2E-16 4.2E-21 134.9 11.8 126 178-315 19-149 (154)
8 3ocp_A PRKG1 protein; serine/t 99.7 3E-16 1E-20 131.5 13.8 108 178-294 30-137 (139)
9 4ev0_A Transcription regulator 99.7 8.4E-16 2.9E-20 137.3 17.2 127 177-316 5-136 (216)
10 3ryp_A Catabolite gene activat 99.7 1.4E-15 4.9E-20 135.3 17.2 130 178-319 3-137 (210)
11 3dv8_A Transcriptional regulat 99.7 1.7E-15 5.9E-20 135.7 17.6 128 177-317 9-143 (220)
12 3iwz_A CAP-like, catabolite ac 99.7 2E-15 6.9E-20 136.2 17.8 131 177-319 17-157 (230)
13 2gau_A Transcriptional regulat 99.7 1.6E-15 5.5E-20 137.4 16.1 131 176-319 15-150 (232)
14 3e97_A Transcriptional regulat 99.7 1.5E-15 5.1E-20 137.6 15.8 126 177-315 12-142 (231)
15 2oz6_A Virulence factor regula 99.7 3E-15 1E-19 132.9 17.4 129 184-319 1-134 (207)
16 3fx3_A Cyclic nucleotide-bindi 99.7 1.9E-15 6.5E-20 137.4 16.2 130 177-319 17-151 (237)
17 1zyb_A Transcription regulator 99.7 3.1E-15 1.1E-19 136.5 17.6 131 177-319 24-161 (232)
18 1vp6_A CNBD, cyclic-nucleotide 99.7 6.7E-16 2.3E-20 128.5 11.9 113 178-301 18-130 (138)
19 3pna_A CAMP-dependent protein 99.6 1.2E-15 4.2E-20 130.4 12.2 107 178-293 45-151 (154)
20 3dkw_A DNR protein; CRP-FNR, H 99.6 2E-15 6.8E-20 135.9 13.8 127 177-315 15-146 (227)
21 3d0s_A Transcriptional regulat 99.6 1.7E-15 5.9E-20 136.8 13.1 130 177-319 12-146 (227)
22 2ptm_A Hyperpolarization-activ 99.6 2.1E-15 7.3E-20 134.3 13.4 115 177-300 77-192 (198)
23 3bpz_A Potassium/sodium hyperp 99.6 4E-15 1.4E-19 133.2 12.7 121 178-312 79-200 (202)
24 3kcc_A Catabolite gene activat 99.6 1.8E-14 6.1E-19 134.2 16.9 126 184-319 57-187 (260)
25 3idb_B CAMP-dependent protein 99.6 2.7E-14 9.3E-19 122.7 16.0 119 166-293 27-155 (161)
26 1o5l_A Transcriptional regulat 99.6 1.2E-14 4E-19 130.9 14.3 130 178-319 6-140 (213)
27 2fmy_A COOA, carbon monoxide o 99.6 1.9E-14 6.6E-19 129.5 12.6 120 178-317 11-134 (220)
28 3e6c_C CPRK, cyclic nucleotide 99.6 4.2E-14 1.4E-18 130.1 15.1 123 183-319 19-146 (250)
29 4ava_A Lysine acetyltransferas 99.6 4.5E-14 1.5E-18 135.3 14.9 115 177-301 19-137 (333)
30 3of1_A CAMP-dependent protein 99.5 2.9E-14 9.9E-19 129.3 11.5 110 177-295 13-122 (246)
31 1ft9_A Carbon monoxide oxidati 99.5 3.1E-14 1.1E-18 128.6 11.4 120 178-317 7-130 (222)
32 1wgp_A Probable cyclic nucleot 99.5 5.2E-15 1.8E-19 123.2 5.8 113 177-293 12-134 (137)
33 3shr_A CGMP-dependent protein 99.5 1.1E-13 3.7E-18 130.4 14.6 125 178-315 164-294 (299)
34 2bgc_A PRFA; bacterial infecti 99.5 1.5E-13 5.2E-18 125.7 15.0 127 183-319 3-137 (238)
35 2d93_A RAP guanine nucleotide 99.5 7.4E-14 2.5E-18 116.4 11.8 103 178-290 23-128 (134)
36 3la7_A Global nitrogen regulat 99.5 2.2E-13 7.6E-18 125.1 16.2 125 186-319 30-162 (243)
37 2qcs_B CAMP-dependent protein 99.5 1.5E-13 5.1E-18 128.6 14.9 110 178-296 46-155 (291)
38 3shr_A CGMP-dependent protein 99.5 1.9E-13 6.5E-18 128.8 15.3 117 168-293 30-152 (299)
39 4din_B CAMP-dependent protein 99.4 3.5E-13 1.2E-17 133.2 11.7 109 178-295 137-245 (381)
40 3of1_A CAMP-dependent protein 99.4 6.1E-13 2.1E-17 120.5 12.0 108 177-293 131-239 (246)
41 1o7f_A CAMP-dependent RAP1 gua 99.4 5.1E-12 1.7E-16 126.5 16.0 125 162-296 27-164 (469)
42 2qcs_B CAMP-dependent protein 99.4 4.1E-12 1.4E-16 118.7 13.8 109 177-294 163-277 (291)
43 1o7f_A CAMP-dependent RAP1 gua 99.4 6.4E-12 2.2E-16 125.8 14.3 111 178-297 344-457 (469)
44 3tnp_B CAMP-dependent protein 99.3 4.5E-12 1.6E-16 126.9 12.6 107 178-293 152-262 (416)
45 3b02_A Transcriptional regulat 99.3 1.1E-11 3.9E-16 109.6 12.5 104 198-319 1-109 (195)
46 3tnp_B CAMP-dependent protein 99.3 9.2E-12 3.1E-16 124.7 11.7 122 177-311 273-405 (416)
47 3beh_A MLL3241 protein; transm 99.3 2.6E-13 8.8E-18 132.5 0.0 113 177-300 234-346 (355)
48 4din_B CAMP-dependent protein 99.2 1.6E-11 5.4E-16 121.3 10.2 108 178-294 255-368 (381)
49 3cf6_E RAP guanine nucleotide 99.2 2.9E-11 1E-15 129.0 12.4 124 161-293 16-148 (694)
50 2zcw_A TTHA1359, transcription 99.2 3.6E-11 1.2E-15 106.8 9.1 109 193-319 2-116 (202)
51 4f7z_A RAP guanine nucleotide 99.1 9.7E-10 3.3E-14 120.9 16.5 123 160-292 25-160 (999)
52 4f7z_A RAP guanine nucleotide 98.8 2.7E-08 9.4E-13 109.4 15.7 111 168-287 329-447 (999)
53 3rns_A Cupin 2 conserved barre 93.8 0.45 1.5E-05 43.1 10.8 69 197-278 40-108 (227)
54 3fjs_A Uncharacterized protein 92.4 1.5 5.1E-05 35.1 10.9 68 196-276 38-105 (114)
55 3lwc_A Uncharacterized protein 90.3 2.1 7.3E-05 34.8 9.9 70 196-279 42-112 (119)
56 1yhf_A Hypothetical protein SP 89.8 3.4 0.00012 32.1 10.5 67 197-276 43-109 (115)
57 2ozj_A Cupin 2, conserved barr 89.8 1.8 6.1E-05 34.0 8.8 67 198-277 42-108 (114)
58 1v70_A Probable antibiotics sy 88.7 3.4 0.00012 30.9 9.5 51 197-249 31-81 (105)
59 4e2g_A Cupin 2 conserved barre 88.0 4.5 0.00016 32.0 10.2 69 196-277 43-112 (126)
60 2qjv_A Uncharacterized IOLB-li 86.8 3.5 0.00012 38.9 10.0 78 196-279 31-111 (270)
61 3ibm_A Cupin 2, conserved barr 86.4 5.7 0.00019 34.0 10.5 88 197-295 59-157 (167)
62 2pfw_A Cupin 2, conserved barr 86.4 6.4 0.00022 30.6 10.1 68 196-276 36-103 (116)
63 3rns_A Cupin 2 conserved barre 86.0 4.9 0.00017 36.1 10.3 67 197-276 156-223 (227)
64 3h8u_A Uncharacterized conserv 85.6 3.6 0.00012 32.7 8.3 52 196-249 41-93 (125)
65 2gu9_A Tetracenomycin polyketi 85.2 6.7 0.00023 29.9 9.5 52 196-249 23-76 (113)
66 2fqp_A Hypothetical protein BP 81.3 3.2 0.00011 31.8 6.0 52 197-249 21-73 (97)
67 2q30_A Uncharacterized protein 81.2 11 0.00039 28.6 9.3 68 197-276 36-105 (110)
68 3kgz_A Cupin 2 conserved barre 81.2 5.2 0.00018 34.1 7.9 49 198-249 48-96 (156)
69 3jzv_A Uncharacterized protein 81.0 5.4 0.00018 34.4 8.0 50 197-249 56-105 (166)
70 2vpv_A Protein MIF2, MIF2P; nu 80.5 5.4 0.00018 34.8 7.8 69 198-276 92-161 (166)
71 3nw4_A Gentisate 1,2-dioxygena 80.5 7 0.00024 38.4 9.5 75 198-285 283-357 (368)
72 3d82_A Cupin 2, conserved barr 79.6 4.1 0.00014 30.7 6.1 50 218-278 52-101 (102)
73 2d40_A Z3393, putative gentisa 79.1 6.8 0.00023 37.9 8.9 75 198-285 272-346 (354)
74 3l2h_A Putative sugar phosphat 78.9 6 0.00021 33.1 7.5 51 197-249 49-100 (162)
75 2bnm_A Epoxidase; oxidoreducta 77.9 9.7 0.00033 32.7 8.7 68 197-276 120-196 (198)
76 1o4t_A Putative oxalate decarb 77.4 11 0.00037 30.6 8.4 51 197-249 60-110 (133)
77 3bu7_A Gentisate 1,2-dioxygena 77.3 8.1 0.00028 38.3 8.9 77 197-286 297-376 (394)
78 1sfn_A Conserved hypothetical 76.6 13 0.00043 33.8 9.5 72 196-277 167-238 (246)
79 2b8m_A Hypothetical protein MJ 75.2 5.7 0.0002 31.1 6.0 51 197-249 30-80 (117)
80 2i45_A Hypothetical protein; n 74.9 4.5 0.00015 31.3 5.2 53 218-281 50-103 (107)
81 2f4p_A Hypothetical protein TM 73.0 10 0.00035 31.5 7.3 51 197-249 51-101 (147)
82 4axo_A EUTQ, ethanolamine util 72.8 9.4 0.00032 32.7 7.1 50 218-278 86-135 (151)
83 1vj2_A Novel manganese-contain 72.6 13 0.00043 29.8 7.6 50 197-249 51-100 (126)
84 4i4a_A Similar to unknown prot 72.4 31 0.0011 27.0 9.9 77 197-286 37-117 (128)
85 1rc6_A Hypothetical protein YL 71.8 10 0.00034 34.6 7.6 68 198-277 63-133 (261)
86 1sfn_A Conserved hypothetical 71.5 17 0.0006 32.9 9.1 65 198-277 54-118 (246)
87 2pyt_A Ethanolamine utilizatio 71.4 11 0.00038 31.1 7.1 65 197-276 60-124 (133)
88 3i7d_A Sugar phosphate isomera 71.3 12 0.0004 31.8 7.4 52 196-249 45-97 (163)
89 3h7j_A Bacilysin biosynthesis 70.8 15 0.00052 33.0 8.5 66 198-276 149-217 (243)
90 2oa2_A BH2720 protein; 1017534 70.8 13 0.00044 30.7 7.4 52 197-249 46-102 (148)
91 1y9q_A Transcriptional regulat 70.4 22 0.00074 30.4 9.1 51 197-249 107-158 (192)
92 3h7j_A Bacilysin biosynthesis 70.2 18 0.00061 32.6 8.8 69 197-278 37-108 (243)
93 1y3t_A Hypothetical protein YX 69.3 29 0.00098 32.2 10.3 68 197-276 49-117 (337)
94 3cew_A Uncharacterized cupin p 69.2 17 0.0006 28.6 7.6 52 196-249 28-80 (125)
95 1sef_A Conserved hypothetical 66.4 12 0.00041 34.4 6.9 68 198-277 66-136 (274)
96 1rc6_A Hypothetical protein YL 66.3 16 0.00055 33.2 7.7 70 196-277 181-253 (261)
97 4e2q_A Ureidoglycine aminohydr 65.5 14 0.00048 34.6 7.1 68 198-278 74-142 (266)
98 1sq4_A GLXB, glyoxylate-induce 65.4 11 0.00039 34.9 6.6 68 198-277 72-142 (278)
99 1dgw_A Canavalin; duplicated s 64.8 11 0.00038 32.5 5.9 52 196-249 43-97 (178)
100 1lr5_A Auxin binding protein 1 63.6 26 0.00088 29.2 8.0 51 197-249 44-102 (163)
101 3nw4_A Gentisate 1,2-dioxygena 62.9 27 0.00093 34.2 8.9 81 196-287 105-186 (368)
102 2vqa_A SLL1358 protein, MNCA; 62.6 30 0.001 32.7 9.1 72 196-278 236-313 (361)
103 2vqa_A SLL1358 protein, MNCA; 62.5 46 0.0016 31.3 10.5 70 196-276 54-129 (361)
104 1sef_A Conserved hypothetical 59.8 45 0.0016 30.5 9.6 68 196-276 184-255 (274)
105 1sq4_A GLXB, glyoxylate-induce 59.4 29 0.001 32.1 8.2 51 196-249 193-244 (278)
106 3ht1_A REMF protein; cupin fol 59.0 17 0.00057 29.2 5.7 48 199-249 44-93 (145)
107 2qnk_A 3-hydroxyanthranilate 3 58.9 52 0.0018 31.2 9.7 70 196-279 209-278 (286)
108 3d0j_A Uncharacterized protein 58.8 25 0.00087 29.9 6.9 54 215-279 50-110 (140)
109 3es1_A Cupin 2, conserved barr 58.6 18 0.00062 31.6 6.2 47 196-245 81-128 (172)
110 2o8q_A Hypothetical protein; c 55.1 44 0.0015 26.5 7.6 31 218-249 66-97 (134)
111 2o1q_A Putative acetyl/propion 54.8 12 0.00042 31.2 4.3 68 196-276 46-116 (145)
112 1o5u_A Novel thermotoga mariti 54.6 62 0.0021 25.1 8.3 48 197-249 34-82 (101)
113 1j58_A YVRK protein; cupin, de 54.2 47 0.0016 31.7 8.9 72 196-278 259-336 (385)
114 2d40_A Z3393, putative gentisa 53.7 39 0.0013 32.5 8.2 77 196-285 102-181 (354)
115 3ebr_A Uncharacterized RMLC-li 52.3 20 0.00069 30.6 5.4 70 196-280 44-117 (159)
116 1x82_A Glucose-6-phosphate iso 52.3 27 0.00092 30.3 6.3 52 197-249 70-133 (190)
117 1tq5_A Protein YHHW; bicupin, 51.5 70 0.0024 29.2 9.2 72 199-286 165-236 (242)
118 2opk_A Hypothetical protein; p 50.9 35 0.0012 26.7 6.3 34 215-249 53-87 (112)
119 1fi2_A Oxalate oxidase, germin 50.0 88 0.003 27.1 9.4 53 196-249 74-133 (201)
120 1uij_A Beta subunit of beta co 48.9 61 0.0021 32.0 8.9 52 196-249 51-105 (416)
121 1j58_A YVRK protein; cupin, de 47.8 77 0.0026 30.1 9.4 52 196-249 81-136 (385)
122 1juh_A Quercetin 2,3-dioxygena 47.4 35 0.0012 32.7 6.8 61 214-285 271-334 (350)
123 3bcw_A Uncharacterized protein 47.3 36 0.0012 27.6 5.9 46 200-249 55-101 (123)
124 3es4_A Uncharacterized protein 47.2 16 0.00053 30.0 3.6 47 200-249 48-94 (116)
125 2cav_A Protein (canavalin); vi 42.0 85 0.0029 31.3 8.8 52 196-249 88-142 (445)
126 2vec_A YHAK, pirin-like protei 41.8 1.6E+02 0.0055 27.0 10.1 67 199-277 187-253 (256)
127 2q1z_B Anti-sigma factor CHRR, 40.8 47 0.0016 29.1 6.0 64 196-276 127-192 (195)
128 4e2q_A Ureidoglycine aminohydr 40.2 1.3E+02 0.0045 27.8 9.3 69 196-275 188-257 (266)
129 4b29_A Dimethylsulfoniopropion 38.7 1.1E+02 0.0036 27.8 8.1 50 198-249 136-185 (217)
130 2ea7_A 7S globulin-1; beta bar 37.0 1.2E+02 0.004 30.1 8.9 52 196-249 63-117 (434)
131 1y3t_A Hypothetical protein YX 33.7 1.2E+02 0.004 27.9 7.9 49 218-277 241-290 (337)
132 1yfu_A 3-hydroxyanthranilate-3 32.8 97 0.0033 27.2 6.6 56 215-281 55-114 (174)
133 2xlg_A SLL1785 protein, CUCA; 32.4 32 0.0011 31.4 3.6 49 200-249 49-116 (239)
134 3bu7_A Gentisate 1,2-dioxygena 32.3 91 0.0031 30.6 7.1 79 196-287 125-207 (394)
135 2y0o_A Probable D-lyxose ketol 31.4 2.3E+02 0.0078 24.7 8.8 53 195-248 54-132 (175)
136 1jb0_X Photosystem I subunit P 30.5 49 0.0017 21.4 3.1 17 142-158 14-30 (35)
137 4h7l_A Uncharacterized protein 30.5 44 0.0015 28.8 4.0 48 218-278 68-117 (157)
138 3myx_A Uncharacterized protein 30.3 1.6E+02 0.0056 26.8 8.1 62 203-278 55-116 (238)
139 3lag_A Uncharacterized protein 27.7 39 0.0013 26.1 2.9 52 197-249 20-73 (98)
140 3o14_A Anti-ecfsigma factor, C 27.4 1.9E+02 0.0066 25.8 7.9 62 196-275 148-210 (223)
141 3cjx_A Protein of unknown func 26.7 75 0.0026 27.2 4.8 50 196-249 45-94 (165)
142 1zvf_A 3-hydroxyanthranilate 3 26.2 1.6E+02 0.0056 25.8 6.9 56 215-281 54-116 (176)
143 2p17_A Pirin-like protein; GK1 24.2 2.6E+02 0.009 25.7 8.5 73 199-282 172-246 (277)
144 3o14_A Anti-ecfsigma factor, C 21.9 1.2E+02 0.004 27.3 5.3 64 197-277 46-109 (223)
145 2arc_A ARAC, arabinose operon 21.4 1.1E+02 0.0038 24.4 4.7 29 218-247 40-68 (164)
146 1fxz_A Glycinin G1; proglycini 21.2 1.7E+02 0.0059 29.3 6.9 71 196-277 340-416 (476)
147 2oyz_A UPF0345 protein VPA0057 20.5 2.7E+02 0.0094 21.8 6.5 62 200-275 29-91 (94)
148 2qnk_A 3-hydroxyanthranilate 3 20.2 2.4E+02 0.0082 26.6 7.1 57 215-282 51-110 (286)
149 2d5f_A Glycinin A3B4 subunit; 20.1 1.8E+02 0.0062 29.3 6.8 71 196-277 369-445 (493)
No 1
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.75 E-value=1.8e-17 Score=138.28 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=107.0
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eE---EEEecCCeeeecc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--TH---LHYVCPFQFVDSP 248 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~---l~~i~pg~F~ge~ 248 (369)
++|+.+ ++++++.+.+.++.+++++|+.++.||++ .+ ++|+|++|.++++. +| .+ +.+++||+++|+.
T Consensus 12 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~ 87 (142)
T 3mdp_A 12 RFFASL--TDEQLKDIALISEEKSFPTGSVIFKENSK-AD-NLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVS 87 (142)
T ss_dssp HHHHTS--CHHHHHHHHHTEEEEEECTTCEEECTTSB-CC-EEEEEEESCEEEECC---------CEEEEECTTCEECGG
T ss_pred chhccC--CHHHHHHHHHhhcEEecCCCCEEEeCCCC-CC-cEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechH
Confidence 357765 89999999999999999999999999997 45 89999999999986 23 36 8999999999999
Q ss_pred ccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q psy12113 249 EYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKL 307 (369)
Q Consensus 249 s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL 307 (369)
+++.+. .+++|++|.++|+++.++++++.++++++|.+...+...+++.+++||
T Consensus 88 ~~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl 141 (142)
T 3mdp_A 88 SLIKPY-----HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLARL 141 (142)
T ss_dssp GSSTTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHhc
Confidence 988644 345699999999999999999999999999999999988888888775
No 2
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.74 E-value=5.6e-17 Score=144.22 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=119.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~ 252 (369)
+|+.+ ++++++.+...++.+++++|+.++.||++ .+ .+|+|++|.++++. +| .++.++.||+++|+.+++.
T Consensus 46 ~f~~l--~~~~l~~l~~~~~~~~~~~ge~i~~~G~~-~~-~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~ 121 (187)
T 3gyd_A 46 LFGDF--SNEEVRYLCSYMQCYAAPRDCQLLTEGDP-GD-YLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMID 121 (187)
T ss_dssp SSCCC--CHHHHHHHHTTCEEEEECTTCEEECTTSC-CC-EEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHH
T ss_pred hhhcC--CHHHHHHHHHhcEEEEeCCCCEEEcCCCC-CC-eEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhC
Confidence 47765 89999999999999999999999999997 45 89999999999987 34 4889999999999999887
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
+.+. ++|++|.++|+++.++++++.++++++|.+...+...+.+.+++|++.+++++.+.+-
T Consensus 122 ~~~~-----~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~~l~~~~f 183 (187)
T 3gyd_A 122 GMPR-----SASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRILPKTL 183 (187)
T ss_dssp CCCC-----SSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBC
T ss_pred CCCe-----eEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 4699999999999999999999999999999999888889999999999999887654
No 3
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.2e-16 Score=141.03 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=110.4
Q ss_pred HhhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecc-c
Q psy12113 176 IRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSP-E 249 (369)
Q Consensus 176 ~~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~-s 249 (369)
-+.|.+| |+++++.+.+.++.+.++||+.++.||+++ + ++|+|++|.++++. +| .++.+++||+++||. +
T Consensus 12 ~~~f~~l--~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~-~-~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~ 87 (194)
T 3dn7_A 12 IRKFIFL--TDEDAGTLSAFFQLKKVRKKETLLKTGEIC-R-INYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMA 87 (194)
T ss_dssp HHTTSCC--CHHHHHHHHTTCEEEEECTTCEEECTTSBC-C-EEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHH
T ss_pred HHHhCCC--CHHHHHHHHHhCEEEEEcCCCEEECCCCee-e-EEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHH
Confidence 3468876 899999999999999999999999999974 5 89999999999986 34 389999999999986 6
Q ss_pred cccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCchhhhh
Q psy12113 250 YMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ-NKDEPWRHK 328 (369)
Q Consensus 250 ~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~-~~~~~~~~~ 328 (369)
++++.| ++++++|.+||+++.++++++.++++++|.+...+...+.+ ++....+++..... +..+.+...
T Consensus 88 ~~~~~~-----~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~----~l~~~~~~~~~l~~~~~~~Rl~~~ 158 (194)
T 3dn7_A 88 FQKQQP-----ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK----SFAAAQLRSKFQHMYSKEEQYHNF 158 (194)
T ss_dssp HHHTCB-----CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH----HHHHHHHHHHHHHHC---------
T ss_pred HhcCCC-----CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 676444 34699999999999999999999999999999988766654 66666666554433 233444433
Q ss_pred cc
Q psy12113 329 MN 330 (369)
Q Consensus 329 ~~ 330 (369)
|.
T Consensus 159 L~ 160 (194)
T 3dn7_A 159 SS 160 (194)
T ss_dssp --
T ss_pred HH
Confidence 33
No 4
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.73 E-value=9.6e-17 Score=134.61 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=110.6
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~ 251 (369)
++|.++ |+++++.+.+.++.+++++|+.++.||+++ + .+|+|++|.++++. +| .++.++.||+++|+.+++
T Consensus 11 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~-~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 86 (149)
T 2pqq_A 11 PLFAAL--DDEQSAELRASMSEVTLARGDTLFHEGDPG-D-RLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLF 86 (149)
T ss_dssp TTTTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSEE-C-EEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGT
T ss_pred hhhhcC--CHHHHHHHHHhceEEEeCCCCEEECCCCCC-C-eEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhc
Confidence 367765 899999999999999999999999999974 5 89999999999986 34 388999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
++.+ ++++++|.++|+++.++++++.++++++|.+...+... +++|+...++++.....
T Consensus 87 ~~~~-----~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~----~~~~l~~~~~~~~~l~~ 145 (149)
T 2pqq_A 87 DPGP-----RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA----VARRLRKTNDAMSDLVF 145 (149)
T ss_dssp SCEE-----CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH----HHHHHHHHHTTC--CCC
T ss_pred CCCC-----cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 7544 44699999999999999999999999999999876644 46688888877665543
No 5
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.70 E-value=5.8e-17 Score=146.03 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=112.2
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNS 256 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~s 256 (369)
++|+.+ |+++.+.+...++.+.++||+.++.||+. .+ .+|+|.+|.++++.+|.++..++||++||+.+++++.+
T Consensus 81 ~~f~~l--~~~~l~~l~~~~~~~~~~~ge~I~~~G~~-~~-~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~- 155 (212)
T 3ukn_A 81 PLFESA--SRGCLRSLSLIIKTSFCAPGEFLIRQGDA-LQ-AIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQV- 155 (212)
T ss_dssp GGGTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSB-CC-EEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSSC-
T ss_pred HHhhcC--CHHHHHHHHHHhheEEeCCCCEEEECCCc-cc-EEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCCC-
Confidence 578875 89999999999999999999999999997 45 89999999999999999999999999999999997541
Q ss_pred CCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Q psy12113 257 SDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLN 311 (369)
Q Consensus 257 s~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~ 311 (369)
..+++|++|.++|+++.+++++|.++++++|.+...+...+.+.++.+++..+
T Consensus 156 --~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~ 208 (212)
T 3ukn_A 156 --IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGS 208 (212)
T ss_dssp --CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC--
T ss_pred --CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccccc
Confidence 03447999999999999999999999999999999998888776666655433
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.69 E-value=5.6e-16 Score=131.96 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=103.2
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNS 256 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~s 256 (369)
++|+.+ ++++++.+...++.+.+++|+.++.+|++ .+ ++|+|++|.++++.++.++.+++||+++|+.+++.+.
T Consensus 33 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~~~~~~~G~~fG~~~~~~~~-- 106 (160)
T 4f8a_A 33 PAFRLA--SDGCLRALAMEFQTVHCAPGDLIYHAGES-VD-SLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEAT-- 106 (160)
T ss_dssp GGGTTC--CHHHHHHHHTTCEEEEECTTCEEECTTSB-CC-EEEEEEESEEEEEETTEEEEEEETTCEEECCTTTCSS--
T ss_pred HhhhhC--CHHHHHHHHHhceeeeeCCCCEEEeCCCC-cc-EEEEEEeeEEEEEECCEEEEEecCCCEeCcHHHhcCc--
Confidence 468765 89999999999999999999999999997 45 8999999999999999999999999999999988752
Q ss_pred CCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHH
Q psy12113 257 SDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLI 299 (369)
Q Consensus 257 s~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~li 299 (369)
...+++|++|.++|+++.++++++.++++++|.+...+...+
T Consensus 107 -~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 107 -LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 123457999999999999999999999999999998765443
No 7
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.69 E-value=1.2e-16 Score=134.93 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=105.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~ 252 (369)
+|..+ ++++++.+.+.++.+++++|+.++.+|++ .+ ++|+|++|.++++. +| .++.++.||+++|+.+++.
T Consensus 19 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 94 (154)
T 2z69_A 19 LFEPL--SPVQLQELLASSDLVNLDKGAYVFRQGEP-AH-AFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFM 94 (154)
T ss_dssp TTTTS--CHHHHHHHHHTCEEEEECTTCEEECTTSB-CC-EEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGS
T ss_pred hhcCC--CHHHHHHHHhhCcEEEecCCCEEecCCCc-cc-eEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhcc
Confidence 57765 89999999999999999999999999997 45 89999999999996 34 3789999999999999887
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIS 315 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~ 315 (369)
+.++ ++++++|.++|+++.++++++.++++++|.+...+...+ ++|+..+++++.
T Consensus 95 ~~~~----~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~----~~rl~~~~~~i~ 149 (154)
T 2z69_A 95 DTPN----YVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKL----STRLHQRIDEIE 149 (154)
T ss_dssp SCSB----CSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHH----HHHHTCCSSCCC
T ss_pred CCCC----CceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHH
Confidence 5441 447999999999999999999999999999998766444 557766555443
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.69 E-value=3e-16 Score=131.53 Aligned_cols=108 Identities=10% Similarity=0.127 Sum_probs=93.2
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+|+.+ ++++++.+...++.+.+++|+.++.||++ .+ .+|+|++|.++++.+|+++.++.||+++|+.+++.+.+.
T Consensus 30 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~g~~~~~~~~G~~fGe~~~l~~~~~- 104 (139)
T 3ocp_A 30 FMKNL--ELSQIQEIVDCMYPVEYGKDSCIIKEGDV-GS-LVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTR- 104 (139)
T ss_dssp TTTTS--CHHHHHHHHHHCEEEEECSSCEEECTTSC-CC-EEEEEEECCEEEEETTEEEEEECTTCEESCHHHHHCCCC-
T ss_pred hhhcC--CHHHHHHHHHhcEEEecCCCCEEEeCCCc-CC-EEEEEEeCEEEEEECCEEEEEeCCCCEeccHHHHCCCCc-
Confidence 57765 89999999999999999999999999997 45 899999999999999999999999999999998875444
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHH
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSV 294 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~ 294 (369)
++|++|.++|+++.++++++.++++++|.+.+-
T Consensus 105 ----~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 105 ----TATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp ----SSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred ----ceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 469999999999999999999999999998763
No 9
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.69 E-value=8.4e-16 Score=137.34 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=109.2
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~ 251 (369)
++|+++ |+++++.+.+.++.+++++|+.++.||+++ + ++|+|++|.++++. +|+ ++.+++||+++|+.+++
T Consensus 5 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~-~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 5 PLFHGL--APEEVDLALSYFQRRLYPQGKPIFYQGDLG-Q-ALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp GGGTTC--CHHHHHHHHTTCEEEEECTTCEEECTTCBC-C-EEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred hhhcCC--CHHHHHHHHHhheEEEeCCCCEEEeCCCCC-C-EEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 478876 899999999999999999999999999974 5 89999999999986 454 89999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIST 316 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~ 316 (369)
++.+ ++++++|.+||+++.++++++.++++++|.+...+...+.+ ++....+++..
T Consensus 81 ~~~~-----~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~~~~~~~~~~~ 136 (216)
T 4ev0_A 81 DEGE-----RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR----RLREADLELDL 136 (216)
T ss_dssp HCCB-----CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred CCCC-----cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7544 44699999999999999999999999999999987766654 55555555443
No 10
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.67 E-value=1.4e-15 Score=135.27 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=107.5
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeecccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~~ 252 (369)
+++|+ |+++++.+.+.++.+++++|+.++.||+++ + ++|+|++|.++++. +|+ ++.+++||+++|+.+.+.
T Consensus 3 l~~~l--~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~-~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~ 78 (210)
T 3ryp_A 3 LGKPQ--TDPTLEWFLSHCHIHKYPSKSTLIHQGEKA-E-TLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE 78 (210)
T ss_dssp ----C--CCHHHHHHHTTSEEEEECTTCEEECTTSBC-C-EEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTS
T ss_pred CCCcC--CHHHHHHHHHhcEEEEeCCCCEEECCCCCC-C-eEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhc
Confidence 46675 899999999999999999999999999974 5 89999999999986 343 899999999999999887
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
+.+ .++++++|.+||+++.++++++.++++++|.+...+...+ ++++....+++.....
T Consensus 79 ~~~----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~l~~~~~~~~~~~~ 137 (210)
T 3ryp_A 79 EGQ----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM----ARRLQVTSEKVGNLAF 137 (210)
T ss_dssp TTC----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCC----CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 542 3447999999999999999999999999999998776555 5577777666655443
No 11
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.67 E-value=1.7e-15 Score=135.69 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=108.9
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCee--eeccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQF--VDSPE 249 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F--~ge~s 249 (369)
++|++| |+++++.+.+.++.+.++||+.++.||+++ + ++|+|++|.++++. +|+ ++.+++||++ +|+.+
T Consensus 9 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~-~-~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~ 84 (220)
T 3dv8_A 9 PLWNDL--NTAQKKLISDNLITQHVKKGTIIHNGNMDC-T-GLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASC 84 (220)
T ss_dssp GGGGTS--CHHHHHHHHTTCEEEEECTTCEEEEGGGCC-C-EEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGG
T ss_pred hhhhcC--CHHHHHHHHhhCceEEeCCCCEEECCCCCc-c-eEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHH
Confidence 468876 899999999999999999999999999974 5 89999999999986 344 8899999999 78999
Q ss_pred cccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12113 250 YMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTN 317 (369)
Q Consensus 250 ~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~ 317 (369)
++++.| ++++++|.+||+++.++++++.++++++|.+...+...+. +++....+++...
T Consensus 85 ~~~~~~-----~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~----~~l~~~~~~~~~~ 143 (220)
T 3dv8_A 85 IMRSIQ-----FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMA----TRFSDVMWLIEQI 143 (220)
T ss_dssp GCTTCC-----CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhCCCC-----CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 887554 4469999999999999999999999999999998775554 4666665555443
No 12
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.67 E-value=2e-15 Score=136.15 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=107.4
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~ 251 (369)
++|.+| ++++++.+.+.++.++++||+.++.||+++ + ++|+|++|.++++. +| .++.+++||+++|+.+.+
T Consensus 17 ~lf~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~-~-~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~ 92 (230)
T 3iwz_A 17 TPSLTL--DAGTIERFLAHSHRRRYPTRTDVFRPGDPA-G-TLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLF 92 (230)
T ss_dssp -----C--CHHHHHHHHTTSEEEEECTTCEEECTTSBC-C-EEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGT
T ss_pred chhccC--CHHHHHHHHHhCeEEEeCCCCEEECCCCCC-C-eEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhh
Confidence 468866 899999999999999999999999999974 5 89999999999996 34 389999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHR-----PMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~-----P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
.+.+ .++++++|.++|+++.++++++.++++++ |.+...+... +++|+....+++.....
T Consensus 93 ~~~~----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l~~ 157 (230)
T 3iwz_A 93 IESD----TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQ----LSKRLLDTTRKASRLAF 157 (230)
T ss_dssp SCCS----BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cCCC----CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 7542 24479999999999999999999999999 8888776644 45677777777665544
No 13
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.66 E-value=1.6e-15 Score=137.44 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=111.2
Q ss_pred HhhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecccc
Q psy12113 176 IRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEY 250 (369)
Q Consensus 176 ~~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~ 250 (369)
.++|.++ |+++++.+.+.++.++++||+.++.||++ .+ ++|+|++|.++++. +| .++.++.||+++|+.++
T Consensus 15 ~~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 15 RDVWSLL--NEEERELLDKEIQPFPCKKASTVFSEGDI-PN-NLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPY 90 (232)
T ss_dssp HHHHTTC--CHHHHHHHHHHCEEEEECTTCEEECTTCC-CC-EEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHH
T ss_pred cHhhhcC--CHHHHHHHHhhCeEEEECCCCEEEeCCCC-CC-eEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehh
Confidence 4578876 89999999999999999999999999997 45 89999999999985 33 48999999999999998
Q ss_pred ccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 251 MSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 251 ~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
+++.+ ++++++|.++|+++.++++++.++++++|.+...+...+ ++++....+++.....
T Consensus 91 ~~~~~-----~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~l~~~~~~~~~l~~ 150 (232)
T 2gau_A 91 FAEET-----CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKAL----AKELGYAERRTVTLTQ 150 (232)
T ss_dssp HHTSC-----CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hCCCC-----cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 87544 446999999999999999999999999999999877655 4577776666655443
No 14
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.66 E-value=1.5e-15 Score=137.60 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=108.3
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~ 251 (369)
++|.++ ++++++.+.+.++.+++++|+.++.||+++ + ++|+|++|.++++. +| .++.+++||+++|+.+++
T Consensus 12 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~-~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 87 (231)
T 3e97_A 12 PLFQNV--PEDAMREALKVVTERNFQPDELVVEQDAEG-E-ALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVL 87 (231)
T ss_dssp GGGTTC--CHHHHHHHHHTEEEEEECTTCBCCCTTCTT-T-CEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTT
T ss_pred hhhccC--CHHHHHHHHHhcEEEEECCCCEEEeCCCCC-C-eEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHh
Confidence 468876 899999999999999999999999999974 5 89999999999986 34 489999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIS 315 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~ 315 (369)
++. .++++++|.++|+++.++++++.++++++|.+...+...+ ++++..+.+++.
T Consensus 88 ~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~l~~~~~~~~ 142 (231)
T 3e97_A 88 AHQ-----ERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEML----ARRVTFLNDELI 142 (231)
T ss_dssp CCC-----CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 743 4557999999999999999999999999999998776555 456666666655
No 15
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.66 E-value=3e-15 Score=132.87 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=106.3
Q ss_pred CCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccCCCC
Q psy12113 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQNSSD 258 (369)
Q Consensus 184 ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ss~ 258 (369)
+|+++++.+.+.++.++++||+.++.||++ .+ ++|+|++|.++++. +| .++.+++||+++|+.+++.+... .
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~-~ 77 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDR-CE-TLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGS-E 77 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSB-CC-EEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCC-CC-eEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCC-C
Confidence 489999999999999999999999999997 45 89999999999986 34 38999999999999998875410 0
Q ss_pred CcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 259 ELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 259 ~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
..++++++|.++|+++.++++++.++++++|.+...+...+ ++|+....+++.....
T Consensus 78 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~~~~~~~~~~~l~~ 134 (207)
T 2oz6_A 78 QERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQM----ADRLRKTTRKVGDLAF 134 (207)
T ss_dssp CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 03457999999999999999999999999999998766444 5577777776665543
No 16
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.66 E-value=1.9e-15 Score=137.42 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=111.9
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~ 251 (369)
++|.++ ++++++.+.+.++.+++++|+.++.+|+++ + ++|+|++|.++++. +| .++.+++||+++|+.+++
T Consensus 17 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~-~-~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~ 92 (237)
T 3fx3_A 17 LLIRSL--PEQHVDALLSQAVWRSYDRGETLFLQEEKA-Q-AIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVAL 92 (237)
T ss_dssp HHHHTS--CHHHHHHHHTTCEEEEECTTCEEECTTSCC-C-EEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHH
T ss_pred HhhccC--CHHHHHHHHhhCEEEEECCCCEEEcCCCcc-c-eEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHh
Confidence 358876 899999999999999999999999999974 5 89999999999997 34 489999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
++.+ ++++++|.++|+++.++++++.++++++|.+...+...+ ++++..+.+++.....
T Consensus 93 ~~~~-----~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~l~~~~~~~~~l~~ 151 (237)
T 3fx3_A 93 RNTP-----YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATT----FGHLHSLVAQLEQLKA 151 (237)
T ss_dssp HTCC-----CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHCCC
T ss_pred cCCC-----CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 7544 446999999999999999999999999999998776555 5577777777766544
No 17
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.66 E-value=3.1e-15 Score=136.45 Aligned_cols=131 Identities=13% Similarity=0.245 Sum_probs=112.6
Q ss_pred hhcCCCCCCHHHHHHHHhc--cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---C--CeEEEEecCCeeeeccc
Q psy12113 177 RVFNPVKISKKQFKELTSE--ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---N--DTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~--~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~--g~~l~~i~pg~F~ge~s 249 (369)
++|.++ ++++++.+.+. ++.+++++|+.++.||++ .+ .+|+|++|.++++. + +.++.+++||+++|+.+
T Consensus 24 ~lf~~l--~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~-~~-~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~ 99 (232)
T 1zyb_A 24 PLFQGL--CHEDFTSILDKVKLHFIKHKAGETIIKSGNP-CT-QLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQS 99 (232)
T ss_dssp GGGTTC--CHHHHHHHHHTSCCEEEEECTTCEEECTTSB-CC-EEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGG
T ss_pred ccccCC--CHHHHHHHHhhCCcEEEEECCCCEEECCCCc-cc-EEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehH
Confidence 468876 89999999998 999999999999999997 45 89999999999986 3 45899999999999999
Q ss_pred cccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 250 YMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 250 ~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
.+++.+ .+++|++|.++|+++.++++++.++++++|.+...+...+ ++++....+++.....
T Consensus 100 ~~~~~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l----~~~l~~~~~~~~~l~~ 161 (232)
T 1zyb_A 100 LFGMNT----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIV----SNRAQNLYSRLWDEPT 161 (232)
T ss_dssp GSSSCC----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHH----HHHHHHHHHHTTSCCC
T ss_pred HhCCCC----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 887544 1447999999999999999999999999999998776544 5688888877765544
No 18
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.66 E-value=6.7e-16 Score=128.53 Aligned_cols=113 Identities=13% Similarity=0.212 Sum_probs=99.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+|+++ |+++++.+.+.++.+++++|+.++.+|++ .+ ++|+|++|.++++..+ ..++.||+++|+.+++.+.+.
T Consensus 18 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~--~~~~~~G~~~G~~~~~~~~~~- 90 (138)
T 1vp6_A 18 LFQKL--GPAVLVEIVRALRARTVPAGAVICRIGEP-GD-RMFFVVEGSVSVATPN--PVELGPGAFFGEMALISGEPR- 90 (138)
T ss_dssp GGGGC--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CC-EEEEEEESCEEECSSS--CEEECTTCEECHHHHHHCCCC-
T ss_pred hhhcC--CHHHHHHHHHhhcEEEeCCCCEEEeCCCC-cc-eEEEEEeeEEEEEeCC--cceECCCCEeeehHhccCCCc-
Confidence 57765 89999999999999999999999999997 45 8999999999999866 357899999999998875543
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHH
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGK 301 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligk 301 (369)
+++++|.++|+++.++++++.++++++|.+...+...+.+
T Consensus 91 ----~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 91 ----SATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp ----SSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ----eeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999987755543
No 19
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.64 E-value=1.2e-15 Score=130.42 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=97.9
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+|+.| ++++++.+...++.+.+++|+.++.+|+++ + .+|+|++|.++++.+|+.+..+.||+++|+.+++.+.+.
T Consensus 45 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~-~-~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~~~~~~- 119 (154)
T 3pna_A 45 LFSHL--DDNERSDIFDAMFPVSFIAGETVIQQGDEG-D-NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPR- 119 (154)
T ss_dssp GGTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSCC-C-EEEEEEESCEEEEETTEEEEEECTTCEECCHHHHHCCCC-
T ss_pred hhhhC--CHHHHHHHHHhceEEEECCCCEEEeCCCCC-C-eEEEEEecEEEEEECCEEEEEecCCCEeeehHhhcCCCc-
Confidence 58876 899999999999999999999999999974 5 899999999999999999999999999999999886554
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
++|++|.++|+++.++++++.++++++|.+.+
T Consensus 120 ----~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 120 ----AATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ----SSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred ----ceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 36999999999999999999999999998765
No 20
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2e-15 Score=135.93 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=107.5
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~ 251 (369)
++|+++ |+++++.+.+.++.+++++|+.++.||+++ + ++|+|++|.++++. +| .++.+++||+++|+.+++
T Consensus 15 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~-~-~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~ 90 (227)
T 3dkw_A 15 HLFEPL--SPVQLQELLASSDLVNLDKGAYVFRQGEPA-H-AFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMF 90 (227)
T ss_dssp TTTSSS--CHHHHHHHHTSCEEEECCTTEEEECTTSBC-C-EEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTT
T ss_pred hhhcCC--CHHHHHHHHhhCEEEEECCCCEEEcCCCcc-c-eEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhc
Confidence 358876 899999999999999999999999999974 5 89999999999986 23 488999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIS 315 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~ 315 (369)
.+.| .++++++|.+||+++.++++++.++++++|.+...+...+.+ ++....+++.
T Consensus 91 ~~~~----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~ 146 (227)
T 3dkw_A 91 MDTP----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST----RLHQRIDEIE 146 (227)
T ss_dssp TTCS----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CCCC----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 7554 144699999999999999999999999999999877766654 5555444443
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.63 E-value=1.7e-15 Score=136.81 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=110.8
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~ 251 (369)
++|.++ |+++++.+.+.++.+++++|+.++.||++ .+ ++|+|++|.++++. +| .++.++.||++||+.+++
T Consensus 12 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~ 87 (227)
T 3d0s_A 12 GIFQGV--EPSAIAALTKQLQPVDFPRGHTVFAEGEP-GD-RLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIF 87 (227)
T ss_dssp STTSSC--CSSTTHHHHTTSCEEEECTTCEEECTTCC-CC-EEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHH
T ss_pred hhhcCC--CHHHHHHHHhhCeEEEeCCCCEEEcCCCc-CC-EEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHc
Confidence 368876 88999999999999999999999999997 45 89999999999986 34 388999999999999988
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
++.+ +++|++|.++|+++.++++++.++++++|.+...+...+ ++++....+++.....
T Consensus 88 ~~~~-----~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~l~~~~~~~~~l~~ 146 (227)
T 3d0s_A 88 DPGP-----RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVL----ARRLRRTNNNLADLIF 146 (227)
T ss_dssp SCSC-----CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCC-----ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 7544 446999999999999999999999999999999877555 5577777766655443
No 22
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.63 E-value=2.1e-15 Score=134.32 Aligned_cols=115 Identities=10% Similarity=0.154 Sum_probs=103.4
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccccccccC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s~~~~~~ 255 (369)
++|+.+ |+++++.+...++.+.+++|+.++.||+. .+ ++|+|.+|.++++. +|+++..++||++||+.+++++.+
T Consensus 77 ~~f~~l--~~~~l~~l~~~~~~~~~~~ge~I~~~G~~-~~-~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~~~ 152 (198)
T 2ptm_A 77 PFFVGA--DSNFVTRVVTLLEFEVFQPADYVIQEGTF-GD-RMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRER 152 (198)
T ss_dssp GGGTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CS-EEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHSSC
T ss_pred cchhcC--CHHHHHHHHHhccceeeCCCCEEEECCCc-Cc-EEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCCCc
Confidence 468865 89999999999999999999999999997 45 89999999999996 688999999999999999998655
Q ss_pred CCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHH
Q psy12113 256 SSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIG 300 (369)
Q Consensus 256 ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~lig 300 (369)
+. +|++|.++|+++.++++++.++++++|.+...+...+.
T Consensus 153 ~~-----~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 153 RV-----ASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp CS-----SEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cc-----eEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 44 69999999999999999999999999999988775554
No 23
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.61 E-value=4e-15 Score=133.18 Aligned_cols=121 Identities=12% Similarity=0.249 Sum_probs=102.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-CeEEEEecCCeeeeccccccccCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-DTHLHYVCPFQFVDSPEYMSCQNS 256 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-g~~l~~i~pg~F~ge~s~~~~~~s 256 (369)
+|+.+ |+++++.|...++.+.+++|+.++.||++ .+ .+|+|.+|.++++.+ |+.. .++||++||+.+++++.+.
T Consensus 79 ~f~~l--~~~~l~~l~~~~~~~~~~~ge~I~~~g~~-~~-~ly~I~~G~v~v~~~~g~~~-~l~~G~~fGe~~~~~~~~~ 153 (202)
T 3bpz_A 79 LFANA--DPNFVTAMLTKLKFEVFQPGDYIIREGTI-GK-KMYFIQHGVVSVLTKGNKEM-KLSDGSYFGEICLLTRGRR 153 (202)
T ss_dssp HHHTS--CHHHHHHHHHHCEEEEECTTCEEECTTSB-CC-EEEEEEECEEEEECTTSCCE-EEETTCEECHHHHHHCSBC
T ss_pred chhcC--CHHHHHHHHHhCCceEECCCCEEEECCCc-CC-eEEEEeccEEEEEECCCeEE-EEcCCCEeccHHHhcCCCc
Confidence 57754 89999999999999999999999999997 45 899999999999874 4433 6899999999999986554
Q ss_pred CCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q psy12113 257 SDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNE 312 (369)
Q Consensus 257 s~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~ 312 (369)
++|++|.++|+++.+++++|.++++++|.+...+...+ ++|+..+++
T Consensus 154 -----~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~----~~rl~~~~~ 200 (202)
T 3bpz_A 154 -----TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA----IDRLDRIGK 200 (202)
T ss_dssp -----SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH----HHHHHHC--
T ss_pred -----ccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHhcc
Confidence 46999999999999999999999999999999877555 457766554
No 24
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.60 E-value=1.8e-14 Score=134.17 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=106.4
Q ss_pred CCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe--EEEEecCCeeeeccccccccCCCC
Q psy12113 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT--HLHYVCPFQFVDSPEYMSCQNSSD 258 (369)
Q Consensus 184 ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~--~l~~i~pg~F~ge~s~~~~~~ss~ 258 (369)
+++++++.+.+.++.+.+++|+.++.||++ .+ ++|+|++|.++++. +|+ ++.+++||++||+.+++.+.+
T Consensus 57 l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~-~~-~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~--- 131 (260)
T 3kcc_A 57 QTDPTLEWFLSHCHIHKYPSKSTLIHQGEK-AE-TLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ--- 131 (260)
T ss_dssp --CHHHHHHHTTSEEEEECTTCEEECTTCB-CC-EEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC---
T ss_pred CCHHHHHHHHhhCEEEEECCCCEEECCCCc-CC-eEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCC---
Confidence 589999999999999999999999999997 45 89999999999986 343 899999999999999887542
Q ss_pred CcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 259 ELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 259 ~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
.++++++|.++|+++.+++++|.++++++|.+...+...+ ++|+....+++.....
T Consensus 132 -~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l----~~~l~~~~~~~~~l~~ 187 (260)
T 3kcc_A 132 -ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM----ARRLQVTSEKVGNLAF 187 (260)
T ss_dssp -BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred -CCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 3446999999999999999999999999999998766554 5577777777665544
No 25
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.59 E-value=2.7e-14 Score=122.67 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHh------hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--CC--eE
Q psy12113 166 ALSIELTELYIR------VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--ND--TH 235 (369)
Q Consensus 166 ~~~~e~~~lY~~------lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~g--~~ 235 (369)
.-+++..+.+.. +|+.| ++++++.+...++.+.+++|+.++.||++ .+ .+|+|++|.++++. +| .+
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l--~~~~l~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~y~i~~G~v~~~~~~~g~~~~ 102 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNL--DPEQMSQVLDAMFEKLVKEGEHVIDQGDD-GD-NFYVIDRGTFDIYVKCDGVGRC 102 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTS--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CC-EEEEEEESEEEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHhCCHhhhcC--CHHHHHHHHHhcceeEeCCCCEEEeCCCC-Cc-EEEEEEeCEEEEEEcCCCCeEE
Confidence 345555554443 36654 89999999999999999999999999997 45 89999999999986 34 48
Q ss_pred EEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 236 LHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 236 l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
+.++.||+++|+.+++.+.+. ++|++|.++|+++.++++++.++++++|.+.+
T Consensus 103 ~~~~~~G~~fGe~~~~~~~~~-----~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 103 VGNYDNRGSFGELALMYNTPR-----AATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EEEEESCCEECGGGGTCCCCC-----SSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred EEEcCCCCEechHHHHcCCCc-----ccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 899999999999999875544 46999999999999999999999999998765
No 26
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.59 E-value=1.2e-14 Score=130.94 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=104.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeecccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~ 252 (369)
.|.+. ++++.+.+...++.++++||+.++.||++ .+ ++|+|++|.++++. +| .++.+++||+++|+.+.+.
T Consensus 6 ~~~~~--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 6 IHHHH--HHMDLKKLLPCGKVIVFRKGEIVKHQDDP-IE-DVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCB-CC-EEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS
T ss_pred cchhh--ccCCHHHHhcccEEEEECCCCEEEcCCCc-cc-eEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc
Confidence 45553 78999999999999999999999999997 45 89999999999986 34 4889999999999999886
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
+. ..++++++|.++|+++.++++++.++++++|.+...+...+ ++|+..+.+++.....
T Consensus 82 ~~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l----~~~~~~~~~~~~~l~~ 140 (213)
T 1o5l_A 82 SE----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV----SEHFRVVSEKLFFLTT 140 (213)
T ss_dssp SS----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred CC----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 43 13447999999999999999999999999999987666444 5577777777665544
No 27
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.56 E-value=1.9e-14 Score=129.52 Aligned_cols=120 Identities=12% Similarity=0.124 Sum_probs=101.3
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--CC--eEEEEecCCeeeeccccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--ND--THLHYVCPFQFVDSPEYMSC 253 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~g--~~l~~i~pg~F~ge~s~~~~ 253 (369)
+|.++ |+++++.+.+.++.++++||+.++.||++ .+ ++|+|++|.++++. +| .++.+++||+++|+
T Consensus 11 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~------ 80 (220)
T 2fmy_A 11 LLEVL--NSEEYSGVLKEFREQRYSKKAILYTPNTE-RN-LVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT------ 80 (220)
T ss_dssp HHHHT--TSGGGTTTGGGSEEEEECTTCEEECTTCS-SC-EEEEEEESEEEEEEECSSCEEEEEEEETTCEEES------
T ss_pred hhhcC--CHHHHHHHHHhhheeEeCCCCEEECCCCC-CC-eEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC------
Confidence 56655 78999999999999999999999999997 45 89999999999964 34 48899999999998
Q ss_pred cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12113 254 QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTN 317 (369)
Q Consensus 254 ~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~ 317 (369)
+ ++++++|.++|+++.++++++.++++++|.+...+...+. +++..+.+++...
T Consensus 81 -~-----~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~----~~~~~~~~~~~~l 134 (220)
T 2fmy_A 81 -H-----TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLG----DLLKNSLTIINGL 134 (220)
T ss_dssp -C-----SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred -c-----cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2 3369999999999999999999999999999998776654 4666666555443
No 28
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.56 E-value=4.2e-14 Score=130.12 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccCCC
Q psy12113 183 KISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 183 ~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
.+|+++++.+.+.++.+.+++|+.++.||+++ + .+|+|++|.++++. +| .++.+++||+++|+ .++
T Consensus 19 ~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~-~-~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~----- 89 (250)
T 3e6c_C 19 FFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEI-T-SMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYP----- 89 (250)
T ss_dssp CSCCGGGGGGGGGSEEEEECTTCEEECTTCCC-C-SEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSC-----
T ss_pred hCCHHHHHHHHhhCeEEEECCCCEEECCCCCC-C-eEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecC-----
Confidence 45899999999999999999999999999974 5 89999999999986 34 38999999999999 554
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
+. ++++++|.++|+++.++++++.++++++|.+...+...+ ++++....+++.....
T Consensus 90 ~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l----~~~l~~~~~~~~~~~~ 146 (250)
T 3e6c_C 90 TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNY----LTKVAYYARQVAEMNT 146 (250)
T ss_dssp CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 23 668999999999999999999999999999998776555 5577777777665544
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.55 E-value=4.5e-14 Score=135.28 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=102.3
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC-eEEEEecCCeeeecccccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND-THLHYVCPFQFVDSPEYMS 252 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g-~~l~~i~pg~F~ge~s~~~ 252 (369)
++|+.| |+++++.|.+.++.+++++|+.++.||++ .+ .+|+|++|.++++. +| +++.++.||++||+.+++.
T Consensus 19 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~ 94 (333)
T 4ava_A 19 DVFQGC--PAEGLVSLAASVQPLRAAAGQVLLRQGEP-AV-SFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLR 94 (333)
T ss_dssp GGGTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSB-CC-CEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHHH
T ss_pred HhHhcC--CHHHHHHHHhhCeEEEECCCCEEEeCCCc-CC-EEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhcC
Confidence 578876 89999999999999999999999999997 45 89999999999987 23 3889999999999999998
Q ss_pred ccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHH
Q psy12113 253 CQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGK 301 (369)
Q Consensus 253 ~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligk 301 (369)
+.+.+ +|++|.++|+++.+++++|.+++ ++|.+...+...+.+
T Consensus 95 ~~~~~-----~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~ 137 (333)
T 4ava_A 95 DSPRS-----ATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQ 137 (333)
T ss_dssp TCBCS-----SEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHH
T ss_pred CCCce-----EEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHH
Confidence 66555 59999999999999999999999 999999987766544
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.9e-14 Score=129.32 Aligned_cols=110 Identities=15% Similarity=0.246 Sum_probs=99.8
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNS 256 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~s 256 (369)
++|+.| ++++++.+.+.++.+.+++|+.++.||++ .+ .+|+|++|.++++.+|+.+..+.||++||+.+++.+.|.
T Consensus 13 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l~~~~~~ 88 (246)
T 3of1_A 13 FLFNKL--DSDSKRLVINCLEEKSVPKGATIIKQGDQ-GD-YFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMYNSPR 88 (246)
T ss_dssp TTTTTS--CHHHHHHHHTTCEEEEECTTCEEECTTCC-CC-EEEEEEECCEEEESTTSCCEEECTTCEECHHHHHHTCCC
T ss_pred HhhHhC--CHHHHHHHHHhhceEEECCCCEEEecCCC-CC-EEEEEEeeEEEEEECCEEEEecCCCCeeehhHHhcCCCC
Confidence 357765 89999999999999999999999999997 45 899999999999999988899999999999999886555
Q ss_pred CCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHH
Q psy12113 257 SDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVF 295 (369)
Q Consensus 257 s~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~ 295 (369)
. +|++|.++|+++.++++++.++++++|......
T Consensus 89 ~-----~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (246)
T 3of1_A 89 A-----ATVVATSDCLLWALDRLTFRKILLGSSFKKRLM 122 (246)
T ss_dssp S-----SEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHH
T ss_pred C-----cEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHH
Confidence 4 599999999999999999999999999877643
No 31
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.53 E-value=3.1e-14 Score=128.57 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=100.6
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--CCe--EEEEecCCeeeeccccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--NDT--HLHYVCPFQFVDSPEYMSC 253 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~g~--~l~~i~pg~F~ge~s~~~~ 253 (369)
+|.+| |+++++.+.+.++.+++++|+.++.||+++ + ++|+|++|.++++. +|+ ++.+++||++||
T Consensus 7 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~-~-~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG------- 75 (222)
T 1ft9_A 7 IANVL--LSPDGETFFRGFRSKIHAKGSLVCTGEGDE-N-GVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC------- 75 (222)
T ss_dssp THHHH--TSTTTTTTTTTCEEEEECTTCEEECTTCCC-C-CEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-------
T ss_pred hhhcC--CHHHHHHHHhhCcEEEECCCCEEECCCCCC-C-eEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-------
Confidence 45554 789999999999999999999999999974 5 89999999999964 454 889999999999
Q ss_pred cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12113 254 QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTN 317 (369)
Q Consensus 254 ~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~ 317 (369)
+.++++++|.++|+++.++++++.++++++|.+...+...+. +++....+++...
T Consensus 76 -----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~----~~l~~~~~~~~~l 130 (222)
T 1ft9_A 76 -----MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILG----RALTSCMRTIEDL 130 (222)
T ss_dssp -----SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 223469999999999999999999999999999998776654 4666666555543
No 32
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.53 E-value=5.2e-15 Score=123.23 Aligned_cols=113 Identities=8% Similarity=0.126 Sum_probs=94.5
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--CCe--EEE--EecCCeeeecccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--NDT--HLH--YVCPFQFVDSPEY 250 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~g~--~l~--~i~pg~F~ge~s~ 250 (369)
++|+.+ ++++++.+.+.++.+.+++|+.++.||+.+ + .+|+|++|.+++.. +|+ ++. ++.||+++|+.++
T Consensus 12 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~-~-~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l 87 (137)
T 1wgp_A 12 PLFENM--DERLLDAICERLKPCLFTEKSYLVREGDPV-N-EMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELL 87 (137)
T ss_dssp SGGGSC--CHHHHHHHHHHCBCCCBCTTEEEECTTSBC-S-EEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHH
T ss_pred cchhhC--CHHHHHHHHHHheEEEeCCCCEEEeCCCCC-C-eEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHH
Confidence 367766 899999999999999999999999999974 5 89999999999774 343 455 9999999999985
Q ss_pred ---ccccCCCC-CcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 251 ---MSCQNSSD-ELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 251 ---~~~~~ss~-~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
+++.+... ..+++|++|.++|+++.++++++.++++++|.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 88 TWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 66544211 02457999999999999999999999999998764
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.52 E-value=1.1e-13 Score=130.45 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=108.4
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC----C--eEEEEecCCeeeeccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN----D--THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~----g--~~l~~i~pg~F~ge~s~~ 251 (369)
+|+.+ ++++.+.+...++.+.+++|+.++.||+. .+ .+|+|++|.++++.. | .++..+.||++||+.+++
T Consensus 164 ~f~~l--~~~~l~~l~~~~~~~~~~~g~~I~~~G~~-~~-~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll 239 (299)
T 3shr_A 164 TFQSL--PEEILSKLADVLEETHYENGEYIIRQGAR-GD-TFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQ 239 (299)
T ss_dssp HHHHS--CHHHHHHHTTTCEEEEECTTCEEECTTCE-EC-EEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGS
T ss_pred HhhhC--CHHHHHHHHHhccEEEECCCCEEEeCCCC-CC-EEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHh
Confidence 46654 89999999999999999999999999997 45 899999999999973 2 489999999999999998
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIS 315 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~ 315 (369)
++.|.. +|++|.++|+++.++++++.++++++|.+...+.. .+++|+....++..
T Consensus 240 ~~~~~~-----~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~----~l~~r~~~~~~~~~ 294 (299)
T 3shr_A 240 GEDVRT-----ANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYE----DAEAKAKYEAEAAF 294 (299)
T ss_dssp SSEECS-----SEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHH----HHHHHHHHHHHHHH
T ss_pred CCCCcc-----eEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHH----HHhhhhhcchhhhh
Confidence 765544 69999999999999999999999999999887664 45668888877643
No 34
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.52 E-value=1.5e-13 Score=125.71 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHh--ccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccC
Q psy12113 183 KISKKQFKELTS--EATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 183 ~ls~~qf~~L~~--~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ 255 (369)
++|+++++.+.. .++.++++||+.++.||++ .+ ++|+|++|.++++. +| .++.++ ||+++|+++++++.+
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~-~~-~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~ 79 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDP-QE-YCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTET 79 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCC-CC-EEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCC
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCC-Cc-eEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCC
Confidence 468999999985 5899999999999999997 45 89999999999986 34 488888 999999999887554
Q ss_pred CCCCcceeEEEee-CCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 256 SSDELYQVSITAE-EDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 256 ss~~~~qvTi~A~-edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
+. ++.+++|. ++|+++.++++++.++++++|.+...+...+ ++|+..+.+++.....
T Consensus 80 ~~---~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----~~~l~~~~~~~~~~~~ 137 (238)
T 2bgc_A 80 SV---GYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTL----QKQVSYSLAKFNDFSI 137 (238)
T ss_dssp BS---CCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred cC---cceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHc
Confidence 20 12466677 6999999999999999999999998877555 5577766666654443
No 35
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.52 E-value=7.4e-14 Score=116.38 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=91.1
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEec-CCCeEEecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccccccccC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLA-QGESYAIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~-kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s~~~~~~ 255 (369)
+|..| ++++++.+.+.++.++++ +|+.++.||+. .+ .+|+|++|.++++. +|+. ..+.||+++|+.+++.+.+
T Consensus 23 ~f~~l--~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~g~~-~~l~~G~~fG~~~~~~~~~ 97 (134)
T 2d93_A 23 AFANM--TMSVRRELCSVMIFEVVEQAGAIILEDGQE-LD-SWYVILNGTVEISHPDGKV-ENLFMGNSFGITPTLDKQY 97 (134)
T ss_dssp TTTSS--CHHHHHHHTTTEEEEEECSSSCEEECTTCE-EC-EEEECCBSCEEEECSSSCE-EEECTTCEESCCSSSCCEE
T ss_pred chhhC--CHHHHHHHHHhheEEEecCCCCEEEeCCCC-CC-eEEEEEeCEEEEEcCCCcE-EEecCCCccChhHhcCCCc
Confidence 37765 899999999999999999 99999999997 45 89999999999997 4666 7799999999999887655
Q ss_pred CCCCcceeEE-EeeCCeEEEEEeHHHHHHHHhcCcc
Q psy12113 256 SSDELYQVSI-TAEEDCLYLCWSRISLDRLLRHRPM 290 (369)
Q Consensus 256 ss~~~~qvTi-~A~edcrvl~w~r~~L~~Ll~~~P~ 290 (369)
.. +++ +|.++|+++.+++++|.+++++.+.
T Consensus 98 ~~-----~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 98 MH-----GIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp CC-----SEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred ce-----eEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 44 478 9999999999999999999998774
No 36
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.52 E-value=2.2e-13 Score=125.15 Aligned_cols=125 Identities=12% Similarity=0.164 Sum_probs=103.9
Q ss_pred HHHHHHHHhccE---EEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccCCC
Q psy12113 186 KKQFKELTSEAT---ICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 186 ~~qf~~L~~~~~---~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+++++.|...+. .++++||+.++.||+++ + .+|+|++|.++++. +| .++.+++||+++|+.+++++.++
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~-~-~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~- 106 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPA-E-RVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKS- 106 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBC-C-EEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCS-
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCC-c-eEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCC-
Confidence 577788888888 99999999999999974 5 89999999999986 34 38999999999999998875542
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
.+.++++|.+||+++.++++++.++++++|.+...+...+ ++|+....+++.....
T Consensus 107 --~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l----~~~l~~~~~~~~~l~~ 162 (243)
T 3la7_A 107 --DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGL----SSRILQTEMMIETLAH 162 (243)
T ss_dssp --BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred --cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 2337999999999999999999999999999998876554 5577776666655443
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.5e-13 Score=128.59 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=99.5
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+|+.| ++++.+.+.+.++.+.+++|+.++.||+. .+ .+|+|++|.++++.+|+.+..+.||++||+.+++.+.+.
T Consensus 46 ~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~~~~~~- 120 (291)
T 2qcs_B 46 LFSHL--DDNERSDIFDAMFPVSFIAGETVIQQGDE-GD-NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPR- 120 (291)
T ss_dssp HHHTS--CHHHHHHHHHHCEEEEECTTCEEECTTSB-CC-EEEEEEECCEEEEETTEEEEEECTTCEECGGGGTCCCBC-
T ss_pred hhhhC--CHHHHHHHHHhccEEEECCCCEEEeCCCC-Cc-eEEEEeeeEEEEEECCeEEEEcCCCCccchHHHhcCCCC-
Confidence 36655 89999999999999999999999999997 45 899999999999999999999999999999998875554
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHH
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFN 296 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~ 296 (369)
++|++|.++|+++.++++++.++++++|.+...+.
T Consensus 121 ----~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (291)
T 2qcs_B 121 ----AATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 155 (291)
T ss_dssp ----SSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ----ceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHH
Confidence 46999999999999999999999999998877544
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.51 E-value=1.9e-13 Score=128.79 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=103.4
Q ss_pred CHHHHHHHHh------hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecC
Q psy12113 168 SIELTELYIR------VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCP 241 (369)
Q Consensus 168 ~~e~~~lY~~------lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~p 241 (369)
+++..+.... +|+.| ++++++.|.+.++.+.+++|+.++.||+. .+ .+|+|++|.++++.+|+++..+.|
T Consensus 30 s~~~~~~i~~~l~~~~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~G~~-~~-~~yiI~~G~v~v~~~g~~~~~~~~ 105 (299)
T 3shr_A 30 SERSKDLIKEAILDNDFMKNL--ELSQIQEIVDCMYPVEYGKDSCIIKEGDV-GS-LVYVMEDGKVEVTKEGVKLCTMGP 105 (299)
T ss_dssp CHHHHHHHHHHHHTCTTTTTS--CHHHHHHHHHHCEEEEECTTCEEECTTCB-CC-CEEEEEESCEEEEETTEEEEEECT
T ss_pred CHHHHHHHHHHHhhCHHHHcC--CHHHHHHHHHhcCeEEECCCCEEEcCCCc-Cc-eEEEEEEEEEEEEECCEEEEEeCC
Confidence 5555555543 47765 89999999999999999999999999997 45 899999999999999999999999
Q ss_pred CeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 242 FQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 242 g~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
|++|||.+++.+.|+. +|++|.++|+++.++++++.++++++|....
T Consensus 106 G~~fGe~~ll~~~~~~-----~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 106 GKVFGELAILYNCTRT-----ATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp TCEESCSGGGTTTBCC-----SEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCeeeHhHHhcCCCCC-----cEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 9999999999866555 5999999999999999999999999997655
No 39
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=133.16 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=99.8
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCC
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSS 257 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss 257 (369)
+|+.| ++++++.|.+.++.+.+++|+.++.||+. .+ .+|+|++|.++++.+|+.+..++||++||+.+++.+.|..
T Consensus 137 lF~~L--~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~-~~-~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~all~~~~r~ 212 (381)
T 4din_B 137 LFAHL--DDNERSDIFDAMFPVTHIAGETVIQQGNE-GD-NFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRA 212 (381)
T ss_dssp TSSSC--CHHHHHHHHHHCEEEECCTTCBSSCTTSB-CC-EEEECSSSEEEEEETTEEEEEEESSCCBCGGGGTSCCBCS
T ss_pred hhhcC--CHHHHHHHHHhceEEEECCCCEEEeCCCC-CC-eEEEEEeeEEEEEECCeEeeeCCCCCEEEchHHhcCCCcc
Confidence 47765 89999999999999999999999999997 45 8999999999999999999999999999999999866554
Q ss_pred CCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHH
Q psy12113 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVF 295 (369)
Q Consensus 258 ~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~ 295 (369)
+|++|.++|+++.++|+++++++.++|.+...+
T Consensus 213 -----atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~ 245 (381)
T 4din_B 213 -----ATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKM 245 (381)
T ss_dssp -----SEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred -----eEEEECCCEEEEEEchHHHHHhhhhhhHHHHHH
Confidence 599999999999999999999999999887643
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.1e-13 Score=120.53 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=96.7
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe-EEEEecCCeeeeccccccccC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDT-HLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~-~l~~i~pg~F~ge~s~~~~~~ 255 (369)
++|+.+ ++.+.+.+....+.+.+++|+.++.||+. .+ .+|+|.+|.++++..+. ++..+.||++|||.+++.+.|
T Consensus 131 ~~f~~l--~~~~l~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~ 206 (246)
T 3of1_A 131 PVLKSL--TTYDRAKLADALDTKIYQPGETIIREGDQ-GE-NFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLP 206 (246)
T ss_dssp GGGTTC--CHHHHHHHHHTCEEEEECTTCEEECTTSB-CC-EEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCB
T ss_pred hhhhcC--CHHHHHHHHHhhheEEeCCCCEEEeCCCc-CC-EEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCC
Confidence 458865 89999999999999999999999999997 45 89999999999998644 899999999999999998666
Q ss_pred CCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 256 SSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 256 ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
+. +|++|.++|+++.++++++.+++..+|.+..
T Consensus 207 ~~-----~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 207 RQ-----ATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CS-----SEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cc-----cEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 54 5999999999999999999999999887643
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=5.1e-12 Score=126.48 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=103.1
Q ss_pred hCCCCCCHHHHHHHH------hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---C
Q psy12113 162 FLPPALSIELTELYI------RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---N 232 (369)
Q Consensus 162 ~r~~~~~~e~~~lY~------~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~ 232 (369)
..|..-+++..+... .+|+.| ++++++.|.+.++.+++++|+.++.||+. .+ .+|+|++|.++++. +
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~-~~-~~y~i~~G~v~v~~~~~~ 102 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKF--HPNLLRQICLCGYYENLEKGITLFRQGDI-GT-NWYAVLAGSLDVKVSETS 102 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSB-CC-EEEEEEESCEEEEECSSS
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcC--CHHHHHHHHHhceEEEECCCCEEEeCCCC-CC-cEEEEEeeEEEEEEecCC
Confidence 444444544444433 347755 89999999999999999999999999997 45 89999999999987 2
Q ss_pred C----eEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHH
Q psy12113 233 D----THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFN 296 (369)
Q Consensus 233 g----~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~ 296 (369)
| .++.+++||++||+.+ +.+.+ +++|++|.++|+++.++++++.++++++|.+...+.
T Consensus 103 g~~~~~~~~~~~~G~~fGe~~-l~~~~-----~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 103 SHQDAVTICTLGIGTAFGESI-LDNTP-----RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp CGGGCEEEEEECTTCEECGGG-GGTCB-----CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred CCCcceEEEEccCCCCcchhh-hCCCC-----ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 4 6999999999999988 77544 446999999999999999999999999998765443
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.38 E-value=4.1e-12 Score=118.75 Aligned_cols=109 Identities=11% Similarity=0.187 Sum_probs=96.4
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC---eEEEEecCCeeeecccc
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND---THLHYVCPFQFVDSPEY 250 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g---~~l~~i~pg~F~ge~s~ 250 (369)
.+|..+ ++.+...+....+.+.+++|+.++.||+. .| .+|+|++|.++++. +| ..+..++||++|||.++
T Consensus 163 ~lf~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l 238 (291)
T 2qcs_B 163 SILESL--DKWERLTVADALEPVQFEDGQKIVVQGEP-GD-EFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIAL 238 (291)
T ss_dssp GGGTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CC-EEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGG
T ss_pred hHhhhC--CHHHHHHHHhhcEEEEECCCCEEEeCCcc-CC-EEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHH
Confidence 457765 88999999999999999999999999997 55 89999999999985 23 48899999999999999
Q ss_pred ccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHH
Q psy12113 251 MSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSV 294 (369)
Q Consensus 251 ~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~ 294 (369)
+.+.+ +++|++|.++|+++.+++++|.+++.++|.+...
T Consensus 239 l~~~~-----~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 277 (291)
T 2qcs_B 239 LMNRP-----KAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 277 (291)
T ss_dssp TCCCC-----CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTT
T ss_pred cCCCC-----cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHH
Confidence 97555 4469999999999999999999999999987664
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.35 E-value=6.4e-12 Score=125.75 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=94.1
Q ss_pred hcCCCCCCHHHHHHHHhccEE-EEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe-EEEEecCCeeeeccccccccC
Q psy12113 178 VFNPVKISKKQFKELTSEATI-CKLAQGESYAIEERTSADERLSILLRGKMTVTCNDT-HLHYVCPFQFVDSPEYMSCQN 255 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~-r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~-~l~~i~pg~F~ge~s~~~~~~ 255 (369)
+|..+ ++++.+.+.+.++. +.+++|+.++.||+. .+ .+|+|++|.++|+.+|. ++..+.||++||+.+++++.|
T Consensus 344 ~f~~l--~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~-~~-~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~ 419 (469)
T 1o7f_A 344 ALSHL--STTVKRELAGVLIFESHAKGGTVLFNQGEE-GT-SWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419 (469)
T ss_dssp GGTTS--CHHHHHHHHHHCEEEEECSTTCEEECTTSC-CC-EEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCSC
T ss_pred hhhhC--CHHHHHHHHHHhheeeEecCCCEEEeCCCc-CC-eEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcCCC
Confidence 47765 89999999999875 589999999999997 45 89999999999998754 999999999999999987655
Q ss_pred CCCCcceeEEEeeC-CeEEEEEeHHHHHHHHhcCccHHHHHHH
Q psy12113 256 SSDELYQVSITAEE-DCLYLCWSRISLDRLLRHRPMLKSVFNS 297 (369)
Q Consensus 256 ss~~~~qvTi~A~e-dcrvl~w~r~~L~~Ll~~~P~L~~~~~~ 297 (369)
.. +|++|.+ +|+++.+++++|.++++++|.+...+..
T Consensus 420 ~~-----~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 420 RA-----ASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp CS-----SEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred ce-----EEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 44 6999998 7999999999999999999999886553
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.34 E-value=4.5e-12 Score=126.92 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=95.9
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC----CeEEEEecCCeeeeccccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN----DTHLHYVCPFQFVDSPEYMSC 253 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~----g~~l~~i~pg~F~ge~s~~~~ 253 (369)
+|+.| ++++++.|.+.++.+.+++|+.++.||+. .+ .+|+|++|.++|+.+ ++++..+.||++||+.+++.+
T Consensus 152 lF~~L--~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~-~d-~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~ 227 (416)
T 3tnp_B 152 LFKNL--DPEQMSQVLDAMFEKLVKEGEHVIDQGDD-GD-NFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN 227 (416)
T ss_dssp HHHTC--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CC-EEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSC
T ss_pred hHhcC--CHHHHHHHHHhcEEEEeCCCCEEEeCCCC-Cc-eEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcC
Confidence 47765 89999999999999999999999999997 45 899999999999873 358999999999999999986
Q ss_pred cCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 254 QNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 254 ~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
.|.. +|++|.++|+++.++|+++++++.++|.+..
T Consensus 228 ~pr~-----atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 228 TPKA-----ATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp CCCS-----SEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CCcc-----cEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 6655 5999999999999999999999999887754
No 45
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.32 E-value=1.1e-11 Score=109.62 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=86.2
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeE
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCL 272 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcr 272 (369)
++++++|+.++.||++ .+ .+|+|++|.++++. +| .++.++.||+++|+ +++++.+ +++|++|.+||+
T Consensus 1 i~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~-----~~~~~~A~~~~~ 72 (195)
T 3b02_A 1 MKRFARKETIYLRGEE-AR-TLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKA-----YRYTAEAMTEAV 72 (195)
T ss_dssp CEEECTTCEEECTTSB-CC-CEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSB-----CSSEEEESSSEE
T ss_pred CeEcCCCCEEECCCCC-CC-eEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCC-----ceeEEEECCcEE
Confidence 4689999999999997 45 89999999999986 34 48999999999999 9887544 446999999999
Q ss_pred EEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 273 YLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 273 vl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
++.++++++. |.+...+. +.+++|+....+++.....
T Consensus 73 v~~i~~~~~~------p~~~~~~~----~~l~~~l~~~~~~~~~l~~ 109 (195)
T 3b02_A 73 VQGLEPRAMD------HEALHRVA----RNLARQMRRVQAYEAHLQT 109 (195)
T ss_dssp EEEECGGGCC------HHHHHHHH----HHHHHHHHHHHHHHHHHTS
T ss_pred EEEEcHHHcC------HHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 9999999998 88777655 4456688888877766554
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.30 E-value=9.2e-12 Score=124.69 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=97.4
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---------C--eEEEEecCCeee
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---------D--THLHYVCPFQFV 245 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---------g--~~l~~i~pg~F~ 245 (369)
.+|+.+ ++.+...+....+.+.+++|+.++.||+. .+ .+|+|.+|.++|+.. | .++..+.||++|
T Consensus 273 ~lf~~L--s~~el~~L~~~l~~~~~~~Ge~I~~eGd~-~~-~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~f 348 (416)
T 3tnp_B 273 PFLKSL--EVSERLKVVDVIGTKVYNDGEQIIAQGDL-AD-SFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYF 348 (416)
T ss_dssp GGGTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CC-EEEEEEEEEEEEECC------------CEEEEECTTCEE
T ss_pred hHhhcC--CHHHHHHHHhhceEEEECCCCEEEeCCCc-CC-EEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEe
Confidence 467866 89999999999999999999999999997 45 899999999999863 2 378999999999
Q ss_pred eccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Q psy12113 246 DSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLN 311 (369)
Q Consensus 246 ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~ 311 (369)
||.+++.+.+.. +|++|.++|+++.+++++|.+++..+|.+....... +.+++..+.
T Consensus 349 GE~all~~~~r~-----~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~----~~~~L~~~~ 405 (416)
T 3tnp_B 349 GELALVTNKPRA-----ASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIAT----YEEQLVALF 405 (416)
T ss_dssp SGGGGTCCSCCS-----SEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----------------
T ss_pred cHHHHhCCCCce-----eEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHH----HHHHHHHHh
Confidence 999999765544 699999999999999999999999999887654433 344554443
No 47
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.29 E-value=2.6e-13 Score=132.50 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCC
Q psy12113 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNS 256 (369)
Q Consensus 177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~s 256 (369)
++|+++ ++++.+.+.+..+.+.++|||.++.||++ .+ ++|+|.+|.++++..+ ...++||+++||.+++++.++
T Consensus 234 ~lf~~l--s~~~l~~l~~~~~~~~~~~ge~I~~~G~~-~~-~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~~~~~ 307 (355)
T 3beh_A 234 PLFQKL--GPAVLVEIVRALRARTVPAGAVICRIGEP-GD-RMFFVVEGSVSVATPN--PVELGPGAFFGEMALISGEPR 307 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccC--CHHHHHHHHHhceEEEECCCCEEEeCCCc-Cc-eEEEEEeeEEEEEECC--eeEECCCCEEeehHHhCCCCc
Confidence 357755 88999999999999999999999999997 45 8999999999999866 468999999999999875544
Q ss_pred CCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHH
Q psy12113 257 SDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIG 300 (369)
Q Consensus 257 s~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~lig 300 (369)
++|++|.++|+++.++++++.++++++|.+...+...+.
T Consensus 308 -----~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 308 -----SATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp --------------------------------------------
T ss_pred -----ceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 469999999999999999999999999999998775553
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=121.27 Aligned_cols=108 Identities=11% Similarity=0.191 Sum_probs=95.7
Q ss_pred hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---C---eEEEEecCCeeeeccccc
Q psy12113 178 VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---D---THLHYVCPFQFVDSPEYM 251 (369)
Q Consensus 178 lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g---~~l~~i~pg~F~ge~s~~ 251 (369)
+|..+ ++.+...+....+.+.+++|+.++.||+. .+ .+|+|.+|.++++.. | .++..++||++|||.+++
T Consensus 255 ~f~~L--s~~el~~l~~~~~~~~~~~ge~I~~eGd~-~~-~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all 330 (381)
T 4din_B 255 ILESL--EKWERLTVADALEPVQFEDGEKIVVQGEP-GD-DFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALL 330 (381)
T ss_dssp TTTTC--CTTHHHHHHTTCBCCCBCSSCBSSCTTSB-CC-EEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGG
T ss_pred HHHhc--cHHHHHHHHHhhhhccCCCCCEEEeCCCc-CC-EEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHh
Confidence 47765 78999999999999999999999999997 45 899999999999973 2 378999999999999999
Q ss_pred cccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHH
Q psy12113 252 SCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSV 294 (369)
Q Consensus 252 ~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~ 294 (369)
.+.|.. +|++|.++|+++.+++++|.+++..+|.+...
T Consensus 331 ~~~~r~-----~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~ 368 (381)
T 4din_B 331 LNRPRA-----ATVVARGPLKCVKLDRPRFERVLGPCSEILKR 368 (381)
T ss_dssp SCCBCS-----SEEEESSCBEEEEEEHHHHHHHHCCHHHHHHT
T ss_pred CCCCce-----eEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHH
Confidence 866554 59999999999999999999999999987664
No 49
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.24 E-value=2.9e-11 Score=128.97 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=102.7
Q ss_pred hhCCCCCC-HHHHHHHHhh-----cCCCCCCHHHHHHHHhccE-EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCC
Q psy12113 161 IFLPPALS-IELTELYIRV-----FNPVKISKKQFKELTSEAT-ICKLAQGESYAIEERTSADERLSILLRGKMTVTCND 233 (369)
Q Consensus 161 ~~r~~~~~-~e~~~lY~~l-----F~pL~ls~~qf~~L~~~~~-~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g 233 (369)
+..|..-+ ++.+.+++.+ |.++ ++++++.+.+.++ .+.++||+.++.||+. .+ .+|+|++|.++++..|
T Consensus 16 ~k~p~~r~~~d~~~l~~~L~~~~lF~~L--s~~~l~~L~~~~~~~~~~~kGe~I~~eGd~-~~-~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 16 RKPPGQRTVDDLEIIYDELLHIKALSHL--STTVKRELAGVLIFESHAKGGTVLFNQGEE-GT-SWYIILKGSVNVVIYG 91 (694)
T ss_dssp HSCGGGCCHHHHHHHHHHHTTCGGGTTS--CHHHHHHHHTTCEEEEECSTTCEEECTTSB-CC-EEEEEEESEEEEEETT
T ss_pred cCChhhCCHHHHHHHHHHHHcChhhccC--CHHHHHHHHHhcceEEEECCCCEEECCCCc-CC-eEEEEEEEEEEEEEeC
Confidence 34444444 4444455433 7766 8999999999998 7899999999999997 45 8999999999999876
Q ss_pred -eEEEEecCCeeeeccccccccCCCCCcceeEEEeeC-CeEEEEEeHHHHHHHHhcCccHHH
Q psy12113 234 -THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEE-DCLYLCWSRISLDRLLRHRPMLKS 293 (369)
Q Consensus 234 -~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~e-dcrvl~w~r~~L~~Ll~~~P~L~~ 293 (369)
.++.++.||++||+.+++.+.+ +++|++|.+ +|+++.++++++.++++++|.+..
T Consensus 92 ~~il~~l~~Gd~fGe~al~~~~~-----~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 92 KGVVCTLHEGDDFGKLALVNDAP-----RAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp TEEEEEEETTCEECHHHHHHTCB-----CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred CEEEEEeCCCCEeehHHHhCCCC-----ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 4999999999999998887544 457999999 599999999999999999998844
No 50
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.20 E-value=3.6e-11 Score=106.76 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=84.6
Q ss_pred HhccEEEEecCCCeEEecCCcCC-cceEEEEEeceEEEEe---CC--eEEEEecCCeeeeccccccccCCCCCcceeEEE
Q psy12113 193 TSEATICKLAQGESYAIEERTSA-DERLSILLRGKMTVTC---ND--THLHYVCPFQFVDSPEYMSCQNSSDELYQVSIT 266 (369)
Q Consensus 193 ~~~~~~r~L~kGe~l~~EG~t~~-d~~L~lVlsG~vrV~~---~g--~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~ 266 (369)
.+.++.++++||+.++.+|+++. + ++|+|++|.++++. +| .++.+++||+++|+ +++.+. .++++++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~-~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~-----~~~~~~~ 74 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRD-RAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQ-----ERIYFAE 74 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTC-CCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTC-----CBCSEEE
T ss_pred CccceEEEECCCCEEECCCCCCCCC-eEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCC-----CcceEEE
Confidence 45678899999999999999740 5 89999999999986 34 48899999999999 777643 3557999
Q ss_pred eeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113 267 AEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ 319 (369)
Q Consensus 267 A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~ 319 (369)
|++||+++.+ ++++. |.+...+.. .+++++..+.+++.....
T Consensus 75 A~~~~~v~~i-~~~~~------p~~~~~~~~----~l~~~l~~~~~~~~~~~~ 116 (202)
T 2zcw_A 75 AATDVRLEPL-PENPD------PELLKDLAQ----HLSQGLAEAYRRIERLAT 116 (202)
T ss_dssp ESSCEEEEEC-CSSCC------HHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred EcccEEEEEE-hHhcC------HHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 9999999999 98876 777776554 445577777777665544
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.10 E-value=9.7e-10 Score=120.86 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=105.2
Q ss_pred HhhCCCCC-CHHHHHHHHh-----hcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-
Q psy12113 160 SIFLPPAL-SIELTELYIR-----VFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN- 232 (369)
Q Consensus 160 ~~~r~~~~-~~e~~~lY~~-----lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~- 232 (369)
.+++|..- ++|.+-||.. +|+.| ++.+++.|.++++...+++|++++.||+. .| .+|+|++|.+.|+..
T Consensus 25 L~K~p~~Rt~edl~~I~~~Lk~~~~f~~l--~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~-gd-~fYIIlsGsV~V~i~~ 100 (999)
T 4f7z_A 25 LDKRPLERSSEDVDIIFTRLKGVKAFEKF--HPNLLRQICLCGYYENLEKGITLFRQGDI-GT-NWYAVLAGSLDVKVSE 100 (999)
T ss_dssp HHSCSSSCCHHHHHHHHHHHTTCTTTTTC--CHHHHHHHHHHCEEEEECTTCEEECTTSC-CC-EEEEEEESEEEEEECS
T ss_pred hcCCcccCCHHHHHHHHHHHhCCHhhhcC--CHHHHHHHHhheEEEEECCCCEEEcCCCc-CC-EEEEEEeeEEEEEEec
Confidence 45566545 5777788865 58876 79999999999999999999999999996 56 999999999999862
Q ss_pred ------CeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHH
Q psy12113 233 ------DTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLK 292 (369)
Q Consensus 233 ------g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~ 292 (369)
+..+..+.||++||| +...+.|.+ +|+.|.++|+++.++|++++.+++++|...
T Consensus 101 ~~~~~~~~~v~~l~~G~sFGE-all~n~pRt-----aTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 101 TSSHQDAVTICTLGIGTAFGE-SILDNTPRH-----ATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SSCTTSCEEEEEEETTCEECG-GGGGTCCCS-----SEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeEEEecCCcchhh-hhccCCCcc-----eEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 568899999999999 777777766 599999999999999999999999887543
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.85 E-value=2.7e-08 Score=109.37 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=94.0
Q ss_pred CHHHHHHHHh-----hcCCCCCCHHHHHHHHhccEEEE-ecCCCeEEecCCcCCcceEEEEEeceEEEEeCC-eEEEEec
Q psy12113 168 SIELTELYIR-----VFNPVKISKKQFKELTSEATICK-LAQGESYAIEERTSADERLSILLRGKMTVTCND-THLHYVC 240 (369)
Q Consensus 168 ~~e~~~lY~~-----lF~pL~ls~~qf~~L~~~~~~r~-L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g-~~l~~i~ 240 (369)
.++.+.+++. .|..| |..+.+.|........ .++|++++.||+. .| .+|+|++|.+.|+.++ ..+..++
T Consensus 329 ~ed~e~l~e~L~~i~~f~~L--s~~v~r~L~~~l~~~~~~kaGtvI~rQGE~-gd-s~YIIlsG~V~V~~~~~~~v~~L~ 404 (999)
T 4f7z_A 329 VDDLEIIYDELLHIKALSHL--STTVKRELAGVLIFESHAKGGTVLFNQGEE-GT-SWYIILKGSVNVVIYGKGVVCTLH 404 (999)
T ss_dssp HHHHHHHHHHHTTCGGGTTS--CHHHHHHHTTTCEEEEESSTTCEEECTTSB-CC-EEEEEEESEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHHhhHHHhcC--CHHHHHHHHHhhhhheeccCCCEEEeCCCc-CC-eEEEEEeeEEEEEEcCCcceEEec
Confidence 3555666653 47865 8899999999887655 5789999999997 56 8999999999999864 4778899
Q ss_pred CCeeeeccccccccCCCCCcceeEEEeeC-CeEEEEEeHHHHHHHHhc
Q psy12113 241 PFQFVDSPEYMSCQNSSDELYQVSITAEE-DCLYLCWSRISLDRLLRH 287 (369)
Q Consensus 241 pg~F~ge~s~~~~~~ss~~~~qvTi~A~e-dcrvl~w~r~~L~~Ll~~ 287 (369)
+|++|||.+..++.|..+ ||.|.+ +|.+++++++++.+++..
T Consensus 405 ~Gd~FGElALL~~~PR~a-----TV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 405 EGDDFGKLALVNDAPRAA-----SIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp TTCEECGGGGTCSCBCSS-----EEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred CCCcccchhhccCCCeeE-----EEEEecCceEEEEeeHHHHHHHHhH
Confidence 999999999999888775 999988 599999999999999965
No 53
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=93.78 E-value=0.45 Score=43.07 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=56.8
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
....+++|+.+-.+-. +.+ .+.+|++|+++++.+|+. +.+.||+++--|+-. ++.+.|.++|+++.+
T Consensus 40 ~~~~~~~G~~~~~h~h-~~~-~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~~p~~~----------~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 40 SLFSLAKDEEITAEAM-LGN-RYYYCFNGNGEIFIENNK-KTISNGDFLEITANH----------NYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEECTTCEEEECSC-SSC-EEEEEEESEEEEEESSCE-EEEETTEEEEECSSC----------CEEEEESSSEEEEEE
T ss_pred EEEEECCCCccCcccc-CCC-EEEEEEeCEEEEEECCEE-EEECCCCEEEECCCC----------CEEEEECCCcEEEEE
Confidence 4567999999988887 466 899999999999999887 579999998766621 367889999999988
Q ss_pred eH
Q psy12113 277 SR 278 (369)
Q Consensus 277 ~r 278 (369)
..
T Consensus 107 ~~ 108 (227)
T 3rns_A 107 GE 108 (227)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 54
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=92.44 E-value=1.5 Score=35.07 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=51.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
....++++|+.+-..-.. .+ .+.++++|.+++..+|+. +.+.||+.+--|+-. +.++.+.++++++.
T Consensus 38 v~~~~l~~G~~~~~H~H~-~~-e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ip~~~----------~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVA-GP-STIQCLEGEVEIGVDGAQ-RRLHQGDLLYLGAGA----------AHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEEECTTCEEEEECCS-SC-EEEEEEESCEEEEETTEE-EEECTTEEEEECTTC----------CEEEEESSSEEEEE
T ss_pred EEEEEECCCCccCceeCC-Cc-EEEEEEECEEEEEECCEE-EEECCCCEEEECCCC----------cEEEEeCCCcEEEE
Confidence 345568999988776654 45 799999999999999886 579999988765521 25677888888665
Q ss_pred E
Q psy12113 276 W 276 (369)
Q Consensus 276 w 276 (369)
+
T Consensus 105 ~ 105 (114)
T 3fjs_A 105 T 105 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 55
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=90.33 E-value=2.1 Score=34.83 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=50.2
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee-CCeEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE-EDCLYL 274 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~-edcrvl 274 (369)
+...++++|+.+...- +.| .+++|++|++++..+|+.. .+.|||.+--|+- . +++..+. ++++++
T Consensus 42 ~~~~~~~pG~~~~~H~--~~~-E~~~Vl~G~~~~~~~g~~~-~l~~GD~v~ip~g--------~--~H~~~~~~~~~~~l 107 (119)
T 3lwc_A 42 IGYGRYAPGQSLTETM--AVD-DVMIVLEGRLSVSTDGETV-TAGPGEIVYMPKG--------E--TVTIRSHEEGALTA 107 (119)
T ss_dssp EEEEEECTTCEEEEEC--SSE-EEEEEEEEEEEEEETTEEE-EECTTCEEEECTT--------C--EEEEEEEEEEEEEE
T ss_pred EEEEEECCCCCcCccC--CCC-EEEEEEeCEEEEEECCEEE-EECCCCEEEECCC--------C--EEEEEcCCCCeEEE
Confidence 3556789998776653 456 7999999999999988865 6999998876551 1 1344444 678887
Q ss_pred EEeHH
Q psy12113 275 CWSRI 279 (369)
Q Consensus 275 ~w~r~ 279 (369)
.+-..
T Consensus 108 ~v~~P 112 (119)
T 3lwc_A 108 YVTYP 112 (119)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 76543
No 56
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=89.85 E-value=3.4 Score=32.15 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=48.4
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
...++++|..+-..-.. .+ .+.+|++|.+++..+|+. +.+.||+.+--+.-. +..+.+.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~-~~-e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip~~~----------~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSP-GD-AMVTILSGLAEITIDQET-YRVAEGQTIVMPAGI----------PHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCS-SE-EEEEEEESEEEEEETTEE-EEEETTCEEEECTTS----------CEEEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECC-Cc-EEEEEEeCEEEEEECCEE-EEECCCCEEEECCCC----------CEEEEECCCceEEEE
Confidence 44568888877654443 44 799999999999999876 469999888654411 145667778888765
No 57
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=89.76 E-value=1.8 Score=34.01 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=46.8
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
...+++|+.+-.... +.+ .+.+|++|++.+..+|+.. .+.||+.+--++-. +.++.+.++|+++.+-
T Consensus 42 ~~~~~~g~~~~~H~h-~~~-e~~~vl~G~~~~~i~~~~~-~l~~Gd~i~i~~~~----------~H~~~~~~~~~~~~i~ 108 (114)
T 2ozj_A 42 LFSFADGESVSEEEY-FGD-TLYLILQGEAVITFDDQKI-DLVPEDVLMVPAHK----------IHAIAGKGRFKMLQIT 108 (114)
T ss_dssp EEEEETTSSCCCBCC-SSC-EEEEEEEEEEEEEETTEEE-EECTTCEEEECTTC----------CBEEEEEEEEEEEEEE
T ss_pred EEEECCCCccccEEC-CCC-eEEEEEeCEEEEEECCEEE-EecCCCEEEECCCC----------cEEEEeCCCcEEEEEE
Confidence 344677776554443 344 7999999999999998754 69999888655411 1355667888888663
No 58
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=88.70 E-value=3.4 Score=30.95 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=37.1
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|..+-..-....+ .+++|++|.+++..+|+.. .+.||+.+--+.
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~-e~~~v~~G~~~~~~~~~~~-~l~~Gd~~~ip~ 81 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSD-KVYYALEGEVVVRVGEEEA-LLAPGMAAFAPA 81 (105)
T ss_dssp EEEEECTTCEEEEECCSSCE-EEEEEEESCEEEEETTEEE-EECTTCEEEECT
T ss_pred EEEEECCCCcCCccCCCCCc-EEEEEEeCEEEEEECCEEE-EeCCCCEEEECC
Confidence 44568888887554432223 6999999999999988754 689998875444
No 59
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=88.03 E-value=4.5 Score=32.03 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=49.9
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCC-eEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEED-CLYL 274 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~ed-crvl 274 (369)
....++++|..+-..-.. .+ .+++|++|.+++..+|+. +.+.||+.+--+.-. ++++.+.++ |+++
T Consensus 43 ~~~~~~~pg~~~~~H~H~-~~-e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip~~~----------~H~~~~~~~~~~~l 109 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHP-HE-QAGVMLEGTLELTIGEET-RVLRPGMAYTIPGGV----------RHRARTFEDGCLVL 109 (126)
T ss_dssp EEEEEECTTCEEEEECCS-SE-EEEEEEEECEEEEETTEE-EEECTTEEEEECTTC----------CEEEECCTTCEEEE
T ss_pred EEEEEECCCCcCCCccCC-Cc-eEEEEEEeEEEEEECCEE-EEeCCCCEEEECCCC----------cEEeEECCCCEEEE
Confidence 355678999988766554 45 799999999999999877 478999988655421 145666666 7776
Q ss_pred EEe
Q psy12113 275 CWS 277 (369)
Q Consensus 275 ~w~ 277 (369)
.+-
T Consensus 110 ~v~ 112 (126)
T 4e2g_A 110 DIF 112 (126)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 60
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=86.84 E-value=3.5 Score=38.94 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=54.8
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEec-CCeeeecc--ccccccCCCCCcceeEEEeeCCeE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVC-PFQFVDSP--EYMSCQNSSDELYQVSITAEEDCL 272 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~-pg~F~ge~--s~~~~~~ss~~~~qvTi~A~edcr 272 (369)
..+.+|++|+.+..+-+. .+ -..++++|.++|..+|+....++ -.+-|+.. .-..- | .|. .++++|.++|+
T Consensus 31 f~~~~L~~Ge~~~~~~~~-~E-~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYv-p--~g~-~v~i~a~~~~~ 104 (270)
T 2qjv_A 31 FDVWQLXAGESITLPSDE-RE-RCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYL-P--HHT-EAXVTAETDLE 104 (270)
T ss_dssp EEEEEECTTCEEEECCSS-EE-EEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEE-C--SSC-CEEEEESSSEE
T ss_pred EEEEEecCCCEEEecCCC-cE-EEEEEecceEEEEECCEEEeccccccccccCCCCcEEEE-C--CCC-EEEEEecCCce
Confidence 578899999999988774 44 78888999999999998776543 22333332 22221 1 122 58999999999
Q ss_pred EEEEeHH
Q psy12113 273 YLCWSRI 279 (369)
Q Consensus 273 vl~w~r~ 279 (369)
+..-+..
T Consensus 105 ~~v~sAp 111 (270)
T 2qjv_A 105 LAVCSAP 111 (270)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9876543
No 61
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=86.45 E-value=5.7 Score=34.04 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=55.3
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe-eCCeEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA-EEDCLYLC 275 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A-~edcrvl~ 275 (369)
...++++|...-..-.. .+ .+++|++|++.+..+|+.. .+.||+++--+... ........ .+++++++
T Consensus 59 ~~~~l~pG~~~~~H~H~-~~-E~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ip~~~--------~H~~~n~~~~~~~~~l~ 127 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHE-HT-HVVMVVRGHAEVVLDDRVE-PLTPLDCVYIAPHA--------WHQIHATGANEPLGFLC 127 (167)
T ss_dssp EEEEECTTCBCCCBBCS-SC-EEEEEEESEEEEEETTEEE-EECTTCEEEECTTC--------CEEEEEESSSCCEEEEE
T ss_pred EEEEECCCCCCCCccCC-Cc-EEEEEEeCEEEEEECCEEE-EECCCCEEEECCCC--------cEEEEeCCCCCCEEEEE
Confidence 34567888776554443 44 7999999999999998854 68999988655521 11122222 45677776
Q ss_pred EeH----------HHHHHHHhcCccHHHHH
Q psy12113 276 WSR----------ISLDRLLRHRPMLKSVF 295 (369)
Q Consensus 276 w~r----------~~L~~Ll~~~P~L~~~~ 295 (369)
+-. .+=..-+.++|.++..+
T Consensus 128 i~~~~~d~p~~p~~~~~~~l~~~~~~~~~~ 157 (167)
T 3ibm_A 128 IVDSDRDRPQRPDADDLARMCADPAVARRI 157 (167)
T ss_dssp EEESSCCCCBCCCHHHHHHHTTSHHHHHHC
T ss_pred EEeCCcCcccCCCHHHHHHHHcChHHHHhh
Confidence 642 22223355667776653
No 62
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=86.37 E-value=6.4 Score=30.55 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=48.5
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
....++++|...-.--.. .+ .+.+|++|.+.+..+|+. +.+.||+.+--++-. +.++.+.++|+++.
T Consensus 36 ~~~~~~~pg~~~~~H~H~-~~-e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip~~~----------~H~~~~~~~~~~l~ 102 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHR-HS-QVSYVVEGEFHVNVDGVI-KVLTAGDSFFVPPHV----------DHGAVCPTGGILID 102 (116)
T ss_dssp EEEEEECTTEEEEEECCS-SE-EEEEEEEECEEEEETTEE-EEECTTCEEEECTTC----------CEEEEESSCEEEEE
T ss_pred EEEEEECCCCcCCcEECC-cc-eEEEEEeeEEEEEECCEE-EEeCCCCEEEECcCC----------ceeeEeCCCcEEEE
Confidence 345568888875443333 44 799999999999998875 468999887554411 24667778888887
Q ss_pred E
Q psy12113 276 W 276 (369)
Q Consensus 276 w 276 (369)
+
T Consensus 103 v 103 (116)
T 2pfw_A 103 T 103 (116)
T ss_dssp E
T ss_pred E
Confidence 6
No 63
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=85.96 E-value=4.9 Score=36.07 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=52.3
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe-eCCeEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA-EEDCLYLC 275 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A-~edcrvl~ 275 (369)
...++++|+.+-..-.. .+ .+.++++|.+++..+|+. +.+.||+++--|+.. +.++.| .++|+++.
T Consensus 156 ~~~~~~~G~~~~~H~H~-~~-e~~~Vl~G~~~~~i~g~~-~~l~~Gd~i~ip~~~----------~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 156 TIMSFWKGESLDPHKAP-GD-ALVTVLDGEGKYYVDGKP-FIVKKGESAVLPANI----------PHAVEAETENFKMLL 222 (227)
T ss_dssp EEEEECTTCEEEEECCS-SE-EEEEEEEEEEEEEETTEE-EEEETTEEEEECTTS----------CEEEECCSSCEEEEE
T ss_pred EEEEECCCCccCCEECC-Cc-EEEEEEeEEEEEEECCEE-EEECCCCEEEECCCC----------cEEEEeCCCCEEEEE
Confidence 45678999998766553 55 799999999999999885 479999998766632 256778 89998876
Q ss_pred E
Q psy12113 276 W 276 (369)
Q Consensus 276 w 276 (369)
.
T Consensus 223 ~ 223 (227)
T 3rns_A 223 I 223 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 64
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=85.63 E-value=3.6 Score=32.70 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=37.4
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s 249 (369)
....++++|..+-..-....+ .+++|++|++++.. +|+. +.+.||+++--++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~-e~~~Vl~G~~~~~~~~~~~-~~l~~Gd~~~i~~ 93 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQ-DTWTVISGEAEYHQGNGIV-THLKAGDIAIAKP 93 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCE-EEEEEEECEEEEECSTTCE-EEEETTEEEEECT
T ss_pred EEEEEECCCCcCCcccCCCCe-EEEEEEEeEEEEEECCCeE-EEeCCCCEEEECC
Confidence 345668899887655443224 69999999999998 6665 4689999876544
No 65
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=85.21 E-value=6.7 Score=29.94 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=37.9
Q ss_pred cEEEEecCCCeEEec--CCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIE--ERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~E--G~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
....++++|...-.. -....+ .+++|++|++++..+|+.. .+.||+.+--+.
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~-e~~~vl~G~~~~~~~~~~~-~l~~Gd~~~i~~ 76 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGAD-QWLFVVDGAGEAIVDGHTQ-ALQAGSLIAIER 76 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCE-EEEEEEECCEEEEETTEEE-EECTTEEEEECT
T ss_pred EEEEEECCCCccCCcccccCCCc-EEEEEEeCEEEEEECCEEE-EeCCCCEEEECC
Confidence 345578899876554 332134 7999999999999988764 689999876544
No 66
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=81.34 E-value=3.2 Score=31.84 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=36.1
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe-EEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDT-HLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~-~l~~i~pg~F~ge~s 249 (369)
...++++|+..-..-.. .++.+++|++|.+++..+|. ..+.+.||+.+--++
T Consensus 21 ~~~~~~Pg~~~~~H~H~-~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~ 73 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHS-MDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPE 73 (97)
T ss_dssp EEEEECTTCBCCSEECC-SCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECT
T ss_pred EEEEECCCCCCCCEECC-CCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCC
Confidence 44568888865333332 22149999999999999864 456799998876544
No 67
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=81.24 E-value=11 Score=28.57 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred EEEEecCCCeEEecCCcCCcceE-EEEEeceEEEEeC-CeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERL-SILLRGKMTVTCN-DTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYL 274 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L-~lVlsG~vrV~~~-g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl 274 (369)
...++++|..+-..-..... .+ .+|++|.+++..+ |+.. .+.||+.+--++-. +.++.+.++++++
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~-e~~~~vl~G~~~~~~~~~~~~-~l~~Gd~~~ip~~~----------~H~~~~~~~~~~l 103 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEG-ELNIVVLEGEGEFVGDGDAVI-PAPRGAVLVAPIST----------PHGVRAVTDMKVL 103 (110)
T ss_dssp EEEEECTTCEEEEECCSSSC-EEEEEEEESCEEEECGGGCEE-EECTTEEEEEETTS----------CEEEEESSSEEEE
T ss_pred EEEEECCCCcCCcccCCCCc-cEEEEEEeCEEEEEeCCCEEE-EECCCCEEEeCCCC----------cEEEEEcCCcEEE
Confidence 44567888877654332112 56 7999999999987 5654 69999887655421 1466777888876
Q ss_pred EE
Q psy12113 275 CW 276 (369)
Q Consensus 275 ~w 276 (369)
.+
T Consensus 104 ~~ 105 (110)
T 2q30_A 104 VT 105 (110)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 68
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=81.17 E-value=5.2 Score=34.07 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=35.6
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
..++++|...-..-.. .+ .+.+|++|.+++..+|+.. .+.||+++--++
T Consensus 48 ~~~l~pG~~~~~H~H~-~~-E~~~Vl~G~~~v~v~g~~~-~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHA-HV-HAVMIHRGHGQCLVGETIS-DVAQGDLVFIPP 96 (156)
T ss_dssp EEEEEEEEECCCBBCS-SC-EEEEEEEEEEEEEETTEEE-EEETTCEEEECT
T ss_pred EEEECCCCccCceeCC-Cc-EEEEEEeCEEEEEECCEEE-EeCCCCEEEECC
Confidence 3456777665444443 34 7999999999999998854 689999886554
No 69
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=80.97 E-value=5.4 Score=34.40 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=36.7
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|...-..-.. .+ .+.+|++|++++..+|+.. .+.||+++--|+
T Consensus 56 ~~~~l~pG~~~~~H~H~-~~-E~~~Vl~G~~~~~v~g~~~-~l~~GD~i~ip~ 105 (166)
T 3jzv_A 56 RYFEVGPGGHSTLERHQ-HA-HGVMILKGRGHAMVGRAVS-AVAPYDLVTIPG 105 (166)
T ss_dssp EEEEEEEEEECCCBBCS-SC-EEEEEEEECEEEEETTEEE-EECTTCEEEECT
T ss_pred EEEEECCCCccCceeCC-Cc-EEEEEEeCEEEEEECCEEE-EeCCCCEEEECC
Confidence 34457777665544443 34 7999999999999998854 689999886655
No 70
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=80.47 E-value=5.4 Score=34.84 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=43.8
Q ss_pred EEEecC-CCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 198 ICKLAQ-GESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 198 ~r~L~k-Ge~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
..++++ |..--.+-....+ .+++|++|++.|+.+|+.. .+.||+.+-=|+ .-.+...-...++|+++..
T Consensus 92 ~v~lpP~G~~~~~~~~h~gE-E~~yVLeG~v~vtl~g~~~-~L~~Gds~~iP~--------g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 92 ILKLPAISGQKKLSNSFRTY-ITFHVIQGIVEVTVCKNKF-LSVKGSTFQIPA--------FNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp EEEECSSGGGCEEEECCSEE-EEEEEEESEEEEEETTEEE-EEETTCEEEECT--------TCEEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCCCCCccCCCce-EEEEEEEeEEEEEECCEEE-EEcCCCEEEECC--------CCCEEEEECCCCCEEEEEE
Confidence 457888 6432222222233 7999999999999998765 699998876544 1223233334556777654
No 71
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=80.46 E-value=7 Score=38.42 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=59.1
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
...|++|+.--.--.+.. .+|.|++|.-.+..+|+.+ -..+|+.|--|+|-. ++..+.+||.+++++
T Consensus 283 ~~~L~pG~~t~~hRht~s--~Vy~V~eG~G~~~I~~~~~-~w~~gD~fvvP~w~~----------h~~~n~~~a~Lf~~~ 349 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGS--TVFQVFEGAGAVVMNGETT-KLEKGDMFVVPSWVP----------WSLQAETQFDLFRFS 349 (368)
T ss_dssp EEEECTTCBCCCEEESSC--EEEEEEESCEEEEETTEEE-EECTTCEEEECTTCC----------EEEEESSSEEEEEEE
T ss_pred eEEECCCCccCCeecccc--EEEEEEeCcEEEEECCEEE-EecCCCEEEECCCCc----------EEEEeCCCEEEEEEe
Confidence 345667766655556533 7999999999999999887 489999999899852 567788999999999
Q ss_pred HHHHHHHH
Q psy12113 278 RISLDRLL 285 (369)
Q Consensus 278 r~~L~~Ll 285 (369)
-.-+.+-+
T Consensus 350 D~Pl~~~L 357 (368)
T 3nw4_A 350 DAPIMEAL 357 (368)
T ss_dssp SHHHHHHT
T ss_pred CHHHHHHh
Confidence 88777654
No 72
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=79.65 E-value=4.1 Score=30.73 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=37.3
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
.+.++++|.+++..+|+.. .+.||+.+--+.-. . .++.+.++|+++.++.
T Consensus 52 e~~~v~~G~~~~~~~~~~~-~l~~Gd~~~ip~~~------~----H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 52 EVFIVMEGTLQIAFRDQNI-TLQAGEMYVIPKGV------E----HKPMAKEECKIMIIEP 101 (102)
T ss_dssp EEEEEEESEEEEECSSCEE-EEETTEEEEECTTC------C----BEEEEEEEEEEEEEEE
T ss_pred EEEEEEeCEEEEEECCEEE-EEcCCCEEEECCCC------e----EeeEcCCCCEEEEEEc
Confidence 7999999999999988754 57999887554411 1 3455668999988764
No 73
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=79.06 E-value=6.8 Score=37.89 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=53.3
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
...+++|..--.--.+ .. .+|+|++|..+++.+|++. .+.+|+.+--|.|.. +.+++.+++++++++
T Consensus 272 ~~~l~pG~~~~~H~h~-~~-ev~~v~~G~g~~~v~~~~~-~~~~GD~~~vP~~~~----------H~~~n~e~~~l~~~~ 338 (354)
T 2d40_A 272 LQLLPKGFASRVARTT-DS-TIYHVVEGSGQVIIGNETF-SFSAKDIFVVPTWHG----------VSFQTTQDSVLFSFS 338 (354)
T ss_dssp EEEECTTCBCCCBEES-SC-EEEEEEEEEEEEEETTEEE-EEETTCEEEECTTCC----------EEEEEEEEEEEEEEE
T ss_pred EEEECCCCCCCceecC-Cc-EEEEEEeCeEEEEECCEEE-EEcCCCEEEECCCCe----------EEEEeCCCEEEEEEc
Confidence 3445555544333333 23 6999999999999998775 689999988777642 456667899999998
Q ss_pred HHHHHHHH
Q psy12113 278 RISLDRLL 285 (369)
Q Consensus 278 r~~L~~Ll 285 (369)
-..+.+-+
T Consensus 339 d~p~~~~l 346 (354)
T 2d40_A 339 DRPVQEAL 346 (354)
T ss_dssp SHHHHHHT
T ss_pred CHHHHHHh
Confidence 77665543
No 74
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=78.94 E-value=6 Score=33.10 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=35.3
Q ss_pred EEEEecCCCe-EEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGES-YAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~-l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|.. .-..-....+ .+++|++|.+.+..+|+. +.+.||+++--++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~-E~~~Vl~G~~~~~~~~~~-~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEE-EAVYVLSGKGTLTMENDQ-YPIAPGDFVGFPC 100 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCC-EEEEEEESCEEEEETTEE-EEECTTCEEEECT
T ss_pred EEEEECCCCcCCCCccCCCCC-EEEEEEEEEEEEEECCEE-EEeCCCCEEEECC
Confidence 4467888874 2111111234 799999999999999887 4699999885443
No 75
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=77.86 E-value=9.7 Score=32.73 Aligned_cols=68 Identities=9% Similarity=0.099 Sum_probs=44.8
Q ss_pred EEEEecCCCeEEe--cCCcCCcceEEEEEeceEEEEeCC----eEEEEecCCeeeeccccccccCCCCCcceeEEEee--
Q psy12113 197 TICKLAQGESYAI--EERTSADERLSILLRGKMTVTCND----THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE-- 268 (369)
Q Consensus 197 ~~r~L~kGe~l~~--EG~t~~d~~L~lVlsG~vrV~~~g----~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~-- 268 (369)
-..++++|..... .-..+.+ .+.+|++|.+.+..+| +. +.+.||+++--++-. ++...+.
T Consensus 120 ~~~~~~pg~~~~~~~~h~h~~~-E~~~Vl~G~~~~~~~~~~~~~~-~~l~~GD~~~~~~~~----------~H~~~n~~~ 187 (198)
T 2bnm_A 120 LVVDVLTDNPDDAKFNSGHAGN-EFLFVLEGEIHMKWGDKENPKE-ALLPTGASMFVEEHV----------PHAFTAAKG 187 (198)
T ss_dssp EEEEECCCCGGGCCCCCCCSSC-EEEEEEESCEEEEESCTTSCEE-EEECTTCEEEECTTC----------CEEEEESTT
T ss_pred EEEEEcCCCCCcccccccCCCe-EEEEEEeeeEEEEECCcCCccc-EEECCCCEEEeCCCC----------ceEEEecCC
Confidence 3446788876542 1122234 7999999999999987 54 579999988654411 1345555
Q ss_pred -CCeEEEEE
Q psy12113 269 -EDCLYLCW 276 (369)
Q Consensus 269 -edcrvl~w 276 (369)
++|+++.+
T Consensus 188 ~~~~~~l~v 196 (198)
T 2bnm_A 188 TGSAKLIAV 196 (198)
T ss_dssp SCCEEEEEE
T ss_pred CCCeEEEEE
Confidence 67887765
No 76
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=77.43 E-value=11 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=36.0
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|..+-.--....+ .+++|++|.+.+..+|+.. .+.||+.+--++
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~-E~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~i~~ 110 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEF-EIYYILLGEGVFHDNGKDV-PIKAGDVCFTDS 110 (133)
T ss_dssp EEEEECTTCEEEEEECCSEE-EEEEEEESEEEEEETTEEE-EEETTEEEEECT
T ss_pred EEEEECCCCccCceECCCcc-EEEEEEeCEEEEEECCEEE-EeCCCcEEEECC
Confidence 34578898866432221123 7999999999999998765 689998875443
No 77
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=77.29 E-value=8.1 Score=38.27 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=55.4
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe---eCCeEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA---EEDCLY 273 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A---~edcrv 273 (369)
....+++|+..-..-.+ .+ .+|+|++|+..+..+|+.. .+.||+++--|.+.. +.+.. .+++++
T Consensus 297 ~~~~l~PG~~~~~HrH~-~~-~v~~VleG~G~~~V~ge~~-~~~~GD~~~iP~g~~----------H~~~N~g~~e~~~l 363 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHT-GN-VIYNVAKGQGYSIVGGKRF-DWSEHDIFCVPAWTW----------HEHCNTQERDDACL 363 (394)
T ss_dssp EEEEECTTCBCCCEEES-SC-EEEEEEECCEEEEETTEEE-EECTTCEEEECTTCC----------EEEEECCSSCCEEE
T ss_pred EEEEECCCCcCCCcccC-Cc-EEEEEEeCeEEEEECCEEE-EEeCCCEEEECCCCe----------EEeEeCCCCCCeEE
Confidence 34456666666555554 34 7999999999888888765 699999999888642 22322 478999
Q ss_pred EEEeHHHHHHHHh
Q psy12113 274 LCWSRISLDRLLR 286 (369)
Q Consensus 274 l~w~r~~L~~Ll~ 286 (369)
++++...+...+.
T Consensus 364 l~i~D~Pl~~~Lg 376 (394)
T 3bu7_A 364 FSFNDFPVMEKLG 376 (394)
T ss_dssp EEEESHHHHHHTT
T ss_pred EEeeCHHHHHHhh
Confidence 9998877776543
No 78
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=76.57 E-value=13 Score=33.82 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=48.8
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
....++++|..+-..-. ...++.++|++|++.+..+|+.. .+.|||++-=.+.. .......-.++|+|+.
T Consensus 167 ~~~~tl~PG~~~~~~~~-h~~ee~~~vLeG~~~~~~~~~~~-~l~~GD~~~~~~~~--------pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 167 VSTMSFAPGASLPYAEV-HYMEHGLLMLEGEGLYKLEENYY-PVTAGDIIWMGAHC--------PQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEECTTCBCSSCBC-CSSCEEEEEEECEEEEEETTEEE-EEETTCEEEECTTC--------CEEEEEESSSCEEEEE
T ss_pred EEEEEECCCCccCcccC-CCceEEEEEEECEEEEEECCEEE-EcCCCCEEEECCCC--------CEEEEcCCCCCEEEEE
Confidence 46668999987765321 22338999999999999988876 69999987543321 1112333456788887
Q ss_pred Ee
Q psy12113 276 WS 277 (369)
Q Consensus 276 w~ 277 (369)
..
T Consensus 237 ~k 238 (246)
T 1sfn_A 237 YK 238 (246)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 79
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=75.21 E-value=5.7 Score=31.11 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=36.3
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|...-.--. +.+ .+.+|++|.+++..+|+....+.||+++--++
T Consensus 30 ~~~~~~pg~~~~~H~H-~~~-e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ip~ 80 (117)
T 2b8m_A 30 NHIVLPRGEQMPKHYS-NSY-VHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPF 80 (117)
T ss_dssp EEEEEETTCBCCCEEC-SSC-EEEEEEESEEEEEETTSCCEEEETTCEEEECT
T ss_pred EEEEECCCCcCCCEeC-CCc-EEEEEEeCEEEEEECCEEEEEeCCCCEEEECC
Confidence 3446778776533222 234 69999999999999887655789999876544
No 80
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=74.95 E-value=4.5 Score=31.25 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=38.4
Q ss_pred eEEEEEeceEEEEeCC-eEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHH
Q psy12113 218 RLSILLRGKMTVTCND-THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISL 281 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g-~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L 281 (369)
.+++|++|.+++..+| +. +.+.||+.+--|+- . +.++.+.++|+++.+.....
T Consensus 50 E~~~Vl~G~~~~~~~~~~~-~~l~~Gd~~~ip~~------~----~H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 50 KVLFAVEGDMAVDFADGGS-MTIREGEMAVVPKS------V----SHRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEESSSCEEEEETTSCE-EEECTTEEEEECTT------C----CEEEEEEEEEEEEEEECC--
T ss_pred EEEEEEeCEEEEEECCCcE-EEECCCCEEEECCC------C----cEeeEeCCCeEEEEEECCCc
Confidence 7999999999999988 65 47999998865441 1 13455567899988875543
No 81
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=73.02 E-value=10 Score=31.47 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=36.6
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|...-..-.. .. .+.+|++|.+++..+|+..+.+.||+.+--++
T Consensus 51 ~~~~~~pg~~~~~H~H~-~~-E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ip~ 101 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHP-GG-QILIVTRGKGFYQERGKPARILKKGDVVEIPP 101 (147)
T ss_dssp EEEEECTTCEECSEECT-TC-EEEEEEEEEEEEEETTSCCEEEETTCEEEECT
T ss_pred EEEEECCCCccCceECC-Cc-eEEEEEeCEEEEEECCEEEEEECCCCEEEECC
Confidence 34567788766433332 34 79999999999999887635689998886544
No 82
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=72.78 E-value=9.4 Score=32.75 Aligned_cols=50 Identities=4% Similarity=0.200 Sum_probs=37.4
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
.+++|++|++++..+|++. .+.|||.+--|+-. +++..+.++|+++.+-.
T Consensus 86 E~~yVLeG~~~l~i~g~~~-~l~~GD~i~iP~G~----------~h~~~n~~~a~~l~V~~ 135 (151)
T 4axo_A 86 EIDYVIDGTLDIIIDGRKV-SASSGELIFIPKGS----------KIQFSVPDYARFIYVTY 135 (151)
T ss_dssp EEEEEEEEEEEEEETTEEE-EEETTCEEEECTTC----------EEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEeEEEEEECCEEE-EEcCCCEEEECCCC----------EEEEEeCCCEEEEEEEC
Confidence 6999999999999988864 69999888655511 23445557888887653
No 83
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=72.59 E-value=13 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.2
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|..+-.--.. .. .+++|++|.+++..+|+.. .+.||+.+--++
T Consensus 51 ~~~~~~pg~~~~~H~H~-~~-e~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ip~ 100 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHP-WE-HEIFVLKGKLTVLKEQGEE-TVEEGFYIFVEP 100 (126)
T ss_dssp EEEEEEEEEEEEEECCS-SC-EEEEEEESEEEEECSSCEE-EEETTEEEEECT
T ss_pred EEEEECCCCcCCceeCC-Cc-EEEEEEEeEEEEEECCEEE-EECCCCEEEECC
Confidence 34567777766544443 44 7999999999999988764 689998886544
No 84
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=72.36 E-value=31 Score=27.02 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe--eCCeEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EEDCLYL 274 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~edcrvl 274 (369)
...++++|...-..-.. .. .+.++++|.+++..+|+.. .+.||+.+--+.-. . ..+.+ .++++++
T Consensus 37 ~~~~~~pg~~~~~H~H~-~~-Ei~~v~~G~~~~~i~~~~~-~l~~Gd~~~i~~~~--------~--H~~~~~~~~~~~~~ 103 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHN-EY-ELFIVIQGNAIIRINDEDF-PVTKGDLIIIPLDS--------E--HHVINNNQEDFHFY 103 (128)
T ss_dssp EEEEECTTEECCCBCCS-SE-EEEEEEESEEEEEETTEEE-EEETTCEEEECTTC--------C--EEEEECSSSCEEEE
T ss_pred EEEEECCCCccCCEecC-Ce-EEEEEEeCEEEEEECCEEE-EECCCcEEEECCCC--------c--EEeEeCCCCCEEEE
Confidence 45567787754433332 34 7999999999999998865 68999887654421 1 23333 4556654
Q ss_pred --EEeHHHHHHHHh
Q psy12113 275 --CWSRISLDRLLR 286 (369)
Q Consensus 275 --~w~r~~L~~Ll~ 286 (369)
.++.+-+..++.
T Consensus 104 ~i~f~~~~~~~~~~ 117 (128)
T 4i4a_A 104 TIWWDKESTLNFLT 117 (128)
T ss_dssp EEEECHHHHHHHHH
T ss_pred EEEECHHHHHHHHH
Confidence 456655555444
No 85
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=71.76 E-value=10 Score=34.61 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=44.7
Q ss_pred EEEecCCCeEEecCC-cCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe--eCCeEEE
Q psy12113 198 ICKLAQGESYAIEER-TSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EEDCLYL 274 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~-t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~edcrvl 274 (369)
..++++|......-. ...+ .+.+|++|++++..+|+. +.+.||+.+--++- .. .++.. .++|+++
T Consensus 63 ~~~l~pg~~~~~~~~~~~~e-e~~~Vl~G~l~~~~~~~~-~~L~~Gd~~~~~~~------~~----H~~~N~~~~~~~~l 130 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIE-TFLYVISGNITAKAEGKT-FALSEGGYLYCPPG------SL----MTFVNAQAEDSQIF 130 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEE-EEEEEEESEEEEEETTEE-EEEETTEEEEECTT------CC----CEEEECSSSCEEEE
T ss_pred EEEEcCCCccCCCCCCCCce-EEEEEEEeEEEEEECCEE-EEECCCCEEEECCC------CC----EEEEeCCCCCEEEE
Confidence 456778765543211 1133 699999999999999886 47999998865441 11 23333 3678888
Q ss_pred EEe
Q psy12113 275 CWS 277 (369)
Q Consensus 275 ~w~ 277 (369)
.+.
T Consensus 131 ~v~ 133 (261)
T 1rc6_A 131 LYK 133 (261)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 86
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=71.50 E-value=17 Score=32.86 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=46.5
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
..++++|......- .+ .+.+|++|++.+..+|+. +.+.||+++--++- .. .+....++++++.+.
T Consensus 54 ~~~l~Pg~~~~~~~---~e-e~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~~p~~------~~----H~~~n~~~~~~l~v~ 118 (246)
T 1sfn_A 54 TAEMPAGAQATESV---YQ-RFAFVLSGEVDVAVGGET-RTLREYDYVYLPAG------EK----HMLTAKTDARVSVFE 118 (246)
T ss_dssp EEEECTTCEEECCS---SE-EEEEEEEEEEEEECSSCE-EEECTTEEEEECTT------CC----CEEEEEEEEEEEEEE
T ss_pred EEEECCCCcCCCCc---ee-EEEEEEECEEEEEECCEE-EEECCCCEEEECCC------CC----EEEEeCCCEEEEEEE
Confidence 45788987765542 44 799999999999999886 47999998865551 11 234444788887764
No 87
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=71.36 E-value=11 Score=31.13 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=44.1
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
-..++++|. ....- ..+ .+++|++|++.+..+|+.. .+.|||.+--++-. +++....++++++.+
T Consensus 60 ~~~~~~pG~-~~~h~--~~~-E~~~VLeG~~~l~~~g~~~-~l~~GD~i~~p~g~----------~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 60 GFMQWDNAF-FPWTL--NYD-EIDMVLEGELHVRHEGETM-IAKAGDVMFIPKGS----------SIEFGTPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEE-EEEEC--SSE-EEEEEEEEEEEEEETTEEE-EEETTCEEEECTTC----------EEEEEEEEEEEEEEE
T ss_pred EEEEECCCC-ccccC--CCC-EEEEEEECEEEEEECCEEE-EECCCcEEEECCCC----------EEEEEeCCCEEEEEE
Confidence 345677883 22221 234 7999999999999998876 69999888655411 234445677887765
No 88
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=71.34 E-value=12 Score=31.77 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=35.9
Q ss_pred cEEEEecCCCeEEe-cCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAI-EERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~-EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
....++++|..... --....+ .+++|++|.+.+..+|+. +.+.+|+.+--++
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~e-E~~~Vl~G~~~~~~~~~~-~~l~~GD~i~ip~ 97 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQD-EFVMVTEGALVLVDDQGE-HPMVPGDCAAFPA 97 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCC-EEEEEEESCEEEEETTEE-EEECTTCEEEECT
T ss_pred EEEEEECCCCcCCCCccCCCCc-EEEEEEECEEEEEECCEE-EEeCCCCEEEECC
Confidence 34567888885421 1111113 699999999999999875 4789998876555
No 89
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=70.82 E-value=15 Score=33.02 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=47.3
Q ss_pred EEEecC-CCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee--CCeEEE
Q psy12113 198 ICKLAQ-GESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE--EDCLYL 274 (369)
Q Consensus 198 ~r~L~k-Ge~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~--edcrvl 274 (369)
..++++ |...-..-.. .+ .+++|++|.+.+..+|+.. .+.||+.+--++.. +.++.+. ++++++
T Consensus 149 ~~~~~p~g~~~~~H~H~-~~-e~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ip~~~----------~H~~~n~~~~~~~~l 215 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHR-NE-QIGICIGGGYDMTVEGCTV-EMKFGTAYFCEPRE----------DHGAINRSEKESKSI 215 (243)
T ss_dssp EEEECTTTEEEEEECCS-SE-EEEEECSSCEEEEETTEEE-EECTTCEEEECTTC----------CEEEEECSSSCEEEE
T ss_pred EEEECCCCCcCCCEeCC-Cc-EEEEEEECEEEEEECCEEE-EECCCCEEEECCCC----------cEEeEeCCCCCEEEE
Confidence 445889 8777665553 44 7999999999999998865 59999988766632 1344444 567776
Q ss_pred EE
Q psy12113 275 CW 276 (369)
Q Consensus 275 ~w 276 (369)
.+
T Consensus 216 ~v 217 (243)
T 3h7j_A 216 NI 217 (243)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 90
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=70.78 E-value=13 Score=30.65 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=36.1
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeE-----EEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTH-----LHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~-----l~~i~pg~F~ge~s 249 (369)
....+++|..+-..-....+ .+++|++|.+.+..+|+. -+.+.||+.+--|+
T Consensus 46 ~~~~l~pg~~~~~H~H~~~~-E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~ 102 (148)
T 2oa2_A 46 TLMSIQVGEDIGLEIHPHLD-QFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPA 102 (148)
T ss_dssp EEEEECTTCBCCCBCCTTCE-EEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECT
T ss_pred EEEEECCCCccCceECCCCc-EEEEEEeCEEEEEECCccccceeeEEECCCCEEEECC
Confidence 34467888765433332233 799999999999987664 25789998876554
No 91
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=70.42 E-value=22 Score=30.40 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=37.1
Q ss_pred EEEEecCCCeEEecCCc-CCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERT-SADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t-~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...++++|......-.. +.+ .+.+|++|.+.+..+|+.. .+.||+.+--++
T Consensus 107 ~~~~~~pg~~~~~~~H~h~~~-E~~~Vl~G~~~~~~~~~~~-~l~~GD~i~i~~ 158 (192)
T 1y9q_A 107 FEITLLDHHQQMSSPHALGVI-EYIHVLEGIMKVFFDEQWH-ELQQGEHIRFFS 158 (192)
T ss_dssp EEEEECTTCEEEECCCSTTCE-EEEEEEESCEEEEETTEEE-EECTTCEEEEEC
T ss_pred EEEEECCCCCccCCCCCCCCE-EEEEEEEeEEEEEECCEEE-EeCCCCEEEEcC
Confidence 34578898876633322 224 7999999999999998765 699999875444
No 92
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=70.19 E-value=18 Score=32.59 Aligned_cols=69 Identities=7% Similarity=0.181 Sum_probs=46.3
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeee-ccccccccCCCCCcceeEEEe--eCCeEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVD-SPEYMSCQNSSDELYQVSITA--EEDCLY 273 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~g-e~s~~~~~~ss~~~~qvTi~A--~edcrv 273 (369)
...++++|..+-..-.. .+ .+.+|++|.+.+..+|+. +.+.||+.+= -|+-. . .++.+ .++|++
T Consensus 37 ~~~~~~pg~~~~~H~H~-~~-e~~~Vl~G~~~~~~~~~~-~~l~~Gd~i~~ip~~~--------~--H~~~n~~~~~~~~ 103 (243)
T 3h7j_A 37 LMSYVPPHTNVEPHQHK-EV-QIGMVVSGELMMTVGDVT-RKMTALESAYIAPPHV--------P--HGARNDTDQEVIA 103 (243)
T ss_dssp EEEEECTTEEEEEECCS-SE-EEEEEEESEEEEEETTEE-EEEETTTCEEEECTTC--------C--EEEEECSSSCEEE
T ss_pred EEEEECCCCccCCEECC-Cc-EEEEEEEeEEEEEECCEE-EEECCCCEEEEcCCCC--------c--EeeEeCCCCcEEE
Confidence 34458888877666554 44 799999999999998876 4789998552 33311 1 23444 345888
Q ss_pred EEEeH
Q psy12113 274 LCWSR 278 (369)
Q Consensus 274 l~w~r 278 (369)
+-+.|
T Consensus 104 l~i~r 108 (243)
T 3h7j_A 104 IDIKR 108 (243)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87754
No 93
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=69.34 E-value=29 Score=32.18 Aligned_cols=68 Identities=10% Similarity=0.222 Sum_probs=46.7
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeC-CeEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEE-DCLYLC 275 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~e-dcrvl~ 275 (369)
...++++|...-..-....+ .+.+|++|++++..+|+. +.+.+|+++--++.. . +++...+ +|+++.
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~-e~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~~p~~~------~----H~~~n~~~~~~~~~ 116 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTH-EGILVLDGKLELTLDGER-YLLISGDYANIPAGT------P----HSYRMQSHRTRLVS 116 (337)
T ss_dssp EEEEECTTCEEEEEECTTCC-EEEEEEESCEEEEETTEE-EEECTTCEEEECTTC------C----EEEEECSTTEEEEE
T ss_pred EEEEeCCCCCCCceeCCCce-EEEEEEECEEEEEECCEE-EEECCCCEEEECCCC------c----EEEEECCCCeEEEE
Confidence 34568888876444343134 799999999999998886 479999988765522 1 3444443 477776
Q ss_pred E
Q psy12113 276 W 276 (369)
Q Consensus 276 w 276 (369)
+
T Consensus 117 ~ 117 (337)
T 1y3t_A 117 Y 117 (337)
T ss_dssp E
T ss_pred E
Confidence 6
No 94
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=69.16 E-value=17 Score=28.62 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=34.7
Q ss_pred cEEEEecCCCeEE-ecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYA-IEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~-~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
....++++|...- .--....+ .+++|++|.+.+..+|+.. .+.||+++--+.
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e-~~~~vl~G~~~~~i~~~~~-~l~~Gd~i~i~~ 80 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNE-EIYGILSGKGFITIDGEKI-ELQAGDWLRIAP 80 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEE-EEEEEEEEEEEEEETTEEE-EEETTEEEEECT
T ss_pred EEEEEECCCCCCCCCccCCCce-EEEEEEeCEEEEEECCEEE-EeCCCCEEEECC
Confidence 3455688887653 11111112 4666999999999998865 689999886544
No 95
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=66.37 E-value=12 Score=34.42 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=44.2
Q ss_pred EEEecCCCeEEecCC-cCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe--eCCeEEE
Q psy12113 198 ICKLAQGESYAIEER-TSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EEDCLYL 274 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~-t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~edcrvl 274 (369)
..++++|......-. ...+ .+.+|++|++++..+|+.. .+.||+.+--++-. . .+... .++|+++
T Consensus 66 ~~~l~pg~~~~~~~~~~~~e-e~~~Vl~G~l~~~~~~~~~-~L~~GD~~~~~~~~------~----H~~~N~~~~~~~~l 133 (274)
T 1sef_A 66 IATFHKNGQQTTGFGGDGIQ-TLVYVIDGRLRVSDGQETH-ELEAGGYAYFTPEM------K----MYLANAQEADTEVF 133 (274)
T ss_dssp EEEEEEEEEECSCSSBTTEE-EEEEEEESEEEEECSSCEE-EEETTEEEEECTTS------C----CEEEESSSSCEEEE
T ss_pred EEEECCCCcCCCCCCCCCce-EEEEEEEeEEEEEECCEEE-EECCCCEEEECCCC------C----EEEEeCCCCCEEEE
Confidence 456778765543221 1133 6999999999999988864 69999988654411 1 23333 3678887
Q ss_pred EEe
Q psy12113 275 CWS 277 (369)
Q Consensus 275 ~w~ 277 (369)
.+.
T Consensus 134 ~v~ 136 (274)
T 1sef_A 134 LYK 136 (274)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 96
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=66.33 E-value=16 Score=33.22 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=46.9
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee---CCeE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE---EDCL 272 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~---edcr 272 (369)
....++++|..+-..-....+ .+++|++|++.+..+|+.. .+.||+++--++-. +..+.+. ++++
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~-E~~~Vl~G~~~~~i~~~~~-~l~~GD~i~~~~~~----------~H~~~n~g~~~~~~ 248 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQE-HGAYILSGQGVYNLDNNWI-PVKKGDYIFMGAYS----------LQAGYGVGRGEAFS 248 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSC-EEEEEEESEEEEESSSCEE-EEETTCEEEECSSE----------EEEEEEC----CEE
T ss_pred EEEEEECCCCccCcccCCCce-EEEEEEEeEEEEEECCEEE-EeCCCCEEEECCCC----------cEEeEeCCCCcCEE
Confidence 356678999876544332233 7999999999999988765 69999988655421 1344444 5677
Q ss_pred EEEEe
Q psy12113 273 YLCWS 277 (369)
Q Consensus 273 vl~w~ 277 (369)
+++..
T Consensus 249 ~l~~~ 253 (261)
T 1rc6_A 249 YIYSK 253 (261)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77653
No 97
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=65.47 E-value=14 Score=34.59 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=46.6
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-CeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-DTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
..++++|..- .......+ ++.+|++|.+.+..+ |+. +.+.+|+.+=-++- .. .++...++++++.+
T Consensus 74 lv~l~PGg~s-~~~~h~~E-EfiyVleG~l~l~l~~g~~-~~L~~Gds~y~p~~------~~----H~~~N~~~Ar~l~V 140 (266)
T 4e2q_A 74 LAKMKEMSSS-GLPPQDIE-RLIFVVEGAVTLTNTSSSS-KKLTVDSYAYLPPN------FH----HSLDCVESATLVVF 140 (266)
T ss_dssp EEEECSSEEC-CCCCTTEE-EEEEEEEECEEEEC--CCC-EEECTTEEEEECTT------CC----CEEEESSCEEEEEE
T ss_pred EEEECcCCcC-CCCCCCCe-EEEEEEEEEEEEEECCCcE-EEEcCCCEEEECCC------CC----EEEEeCCCEEEEEE
Confidence 5578888763 22222344 899999999999998 775 47999988866551 12 24445689998887
Q ss_pred eH
Q psy12113 277 SR 278 (369)
Q Consensus 277 ~r 278 (369)
.+
T Consensus 141 ~k 142 (266)
T 4e2q_A 141 ER 142 (266)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 98
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=65.44 E-value=11 Score=34.95 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=45.3
Q ss_pred EEEecCCCeEEe-cCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee--CCeEEE
Q psy12113 198 ICKLAQGESYAI-EERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE--EDCLYL 274 (369)
Q Consensus 198 ~r~L~kGe~l~~-EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~--edcrvl 274 (369)
..++++|..... .-....+ .+.+|++|++++..+|+.. .+.||+++--++-. . .+.... ++++++
T Consensus 72 ~~~l~PG~~~~~~~h~H~~e-E~~~Vl~G~l~v~v~g~~~-~L~~GD~i~ip~~~------~----H~~~N~g~~~~~~l 139 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAE-AVLFVVEGELSLTLQGQVH-AMQPGGYAFIPPGA------D----YKVRNTTGQHTRFH 139 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEE-EEEEEEESCEEEEESSCEE-EECTTEEEEECTTC------C----EEEECCSSSCEEEE
T ss_pred EEEECCCCccCCCCcCCCce-EEEEEEeCEEEEEECCEEE-EECCCCEEEECCCC------c----EEEEECCCCCEEEE
Confidence 456778776621 1212244 7999999999999998864 79999988655411 1 233333 678888
Q ss_pred EEe
Q psy12113 275 CWS 277 (369)
Q Consensus 275 ~w~ 277 (369)
.+.
T Consensus 140 ~v~ 142 (278)
T 1sq4_A 140 WIR 142 (278)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 99
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=64.79 E-value=11 Score=32.54 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=39.9
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---CeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~~l~~i~pg~F~ge~s 249 (369)
+...++++|...... ....+ .+.+|++|++++... |...+.+.+||.+-=|.
T Consensus 43 ~~~~~l~pg~~~~pH-h~~a~-E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~ 97 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPH-HSDSD-LLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQA 97 (178)
T ss_dssp EEEEEECTTEEEEEE-EESSE-EEEEEEESEEEEEEEETTEEEEEEEETTEEEEECT
T ss_pred EEEEEecCCcEecCc-CCCCC-EEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECC
Confidence 456679999887666 54455 799999999999863 45567899999887655
No 100
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=63.56 E-value=26 Score=29.15 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=36.0
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe--------EEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDT--------HLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~--------~l~~i~pg~F~ge~s 249 (369)
...++++|...-..-.. .+ .+++|++|.+++..+|. ..+.+.||+++--++
T Consensus 44 ~~~~~~pg~~~~~H~H~-~~-E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~ 102 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHS-CE-EVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPV 102 (163)
T ss_dssp EEEEECTTCBCCEEEES-SC-EEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECT
T ss_pred EEEEECCCCcCCCeECC-CC-eEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECC
Confidence 44568888765333332 34 69999999999998761 445799999886554
No 101
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=62.93 E-value=27 Score=34.19 Aligned_cols=81 Identities=10% Similarity=0.113 Sum_probs=62.1
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEE-EEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMT-VTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYL 274 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vr-V~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl 274 (369)
+....+++|+..-..-.. .+ .+++|++|.-. +..||+.+ .+.+|+++--|.+.. .++.-+-.+++.++
T Consensus 105 a~~~~l~PG~~~~~HrH~-~~-ev~~VleG~G~~~~vdG~~~-~~~~GD~v~iP~g~~--------H~~~N~gde~l~~l 173 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHS-QN-AFRFVVEGEGVWTVVNGDPV-RMSRGDLLLTPGWCF--------HGHMNDTDQPMAWI 173 (368)
T ss_dssp EEEEEECTTCEEEEEEES-SC-EEEECSSCEEEEEEETTEEE-EEETTCEEEECTTCC--------EEEEECSSSCEEEE
T ss_pred EEEEEECCCCccCceecc-cc-eEEEEEecceEEEEECCEEE-EEeCCCEEEECCCCc--------EEeEeCCCCCeEEE
Confidence 567789999998888886 44 79999999985 66788866 589999998887542 22334456788888
Q ss_pred EEeHHHHHHHHhc
Q psy12113 275 CWSRISLDRLLRH 287 (369)
Q Consensus 275 ~w~r~~L~~Ll~~ 287 (369)
.+.-.-|...+.-
T Consensus 174 ~v~D~Pl~~~l~~ 186 (368)
T 3nw4_A 174 DGLDIPFSQQMDV 186 (368)
T ss_dssp EEECHHHHHHHTC
T ss_pred EecchHHHhhcCc
Confidence 8888888877643
No 102
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=62.58 E-value=30 Score=32.71 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=49.4
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe-EEEEecCCeeeeccccccccCCCCCcceeEEEe--eC
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EE 269 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~e 269 (369)
....++++|...-..-....+ .+++|++|++++.. +|+ .-+.+.+|+.+--++.. ++.+.+ .+
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~-E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~----------~H~~~n~~~~ 304 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNAD-EWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGY----------GHAIRNSSQK 304 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCC-EEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTC----------EEEEECCSSS
T ss_pred EEEEEECCCcccccccCCCCC-EEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCC----------eEEeEECCCC
Confidence 355678999887655443324 79999999999987 676 45689999988765532 133333 35
Q ss_pred CeEEEEEeH
Q psy12113 270 DCLYLCWSR 278 (369)
Q Consensus 270 dcrvl~w~r 278 (369)
+++++.+-.
T Consensus 305 ~~~~l~~~~ 313 (361)
T 2vqa_A 305 PLDIVVVFN 313 (361)
T ss_dssp CEEEEEEES
T ss_pred CEEEEEEEC
Confidence 677777754
No 103
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=62.54 E-value=46 Score=31.32 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=47.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCe-EEEEecCCeeeeccccccccCCCCCcceeEEEee--C
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE--E 269 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~--e 269 (369)
+...++++|...-..-....+ .+.+|++|++++.. +|+ ..+.+.+||.+-=|+.. .+.+.+. +
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~-E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~----------~H~~~n~~~~ 122 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAA-EWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGW----------GHSIEGIGPD 122 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCC-EEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTC----------EEEEEECSSS
T ss_pred eEEEEEcCCCCCCceeCCCCC-EEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCC----------eEEEEeCCCC
Confidence 346678899876543332144 79999999999998 553 55789999988765522 2345554 4
Q ss_pred CeEEEEE
Q psy12113 270 DCLYLCW 276 (369)
Q Consensus 270 dcrvl~w 276 (369)
+++++.+
T Consensus 123 ~~~~l~v 129 (361)
T 2vqa_A 123 TAKFLLV 129 (361)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 7787765
No 104
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=59.82 E-value=45 Score=30.45 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=47.4
Q ss_pred cEEEEecCCCeEEe-cCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee---CCe
Q psy12113 196 ATICKLAQGESYAI-EERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE---EDC 271 (369)
Q Consensus 196 ~~~r~L~kGe~l~~-EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~---edc 271 (369)
....++++|..+-. .-. +.+ .+.+|++|++++..+|+.. .+.||+++--++-. . ..+.+. +++
T Consensus 184 ~~~~~l~pg~~~~~~H~H-~~~-E~~yVl~G~~~~~i~~~~~-~l~~GD~i~i~~~~------~----H~~~n~~~~~~~ 250 (274)
T 1sef_A 184 MHILSFEPGASHAYIETH-VQE-HGAYLISGQGMYNLDNEWY-PVEKGDYIFMSAYV------P----QAAYAVGREEPL 250 (274)
T ss_dssp EEEEEECTTCBCSSCBCC-SCC-EEEEEEECEEEEEETTEEE-EEETTCEEEECTTC------C----EEEEEECSSSCE
T ss_pred EEEEEECCCCccCcceec-cCe-EEEEEEeCEEEEEECCEEE-EECCCCEEEECCCC------C----EEEEeCCCCCCE
Confidence 34557899987744 333 344 7999999999999998864 68999988655421 1 234443 568
Q ss_pred EEEEE
Q psy12113 272 LYLCW 276 (369)
Q Consensus 272 rvl~w 276 (369)
+++++
T Consensus 251 ~~l~~ 255 (274)
T 1sef_A 251 MYVYS 255 (274)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88887
No 105
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=59.37 E-value=29 Score=32.11 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=39.5
Q ss_pred cEEEEecCCCeEEe-cCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAI-EERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~-EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
....++++|..+-. +-.. .++.++|++|+..+..+|+.. -+.||+++--..
T Consensus 193 ~~~~~l~pG~~i~~~~~h~--~e~~~~il~G~~~~~~~~~~~-~v~~GD~~~~~~ 244 (278)
T 1sq4_A 193 VNIVNFEPGGVIPFAETHV--MEHGLYVLEGKAVYRLNQDWV-EVEAGDFMWLRA 244 (278)
T ss_dssp EEEEEECSSSEESCCCCCS--EEEEEEEEECEEEEEETTEEE-EEETTCEEEEEE
T ss_pred EEEEEECCCCCcCCCCCCC--ccEEEEEEeCEEEEEECCEEE-EeCCCCEEEECC
Confidence 56678999999985 4432 337899999999999888764 699999885443
No 106
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=59.01 E-value=17 Score=29.17 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=31.4
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEE--eCCeEEEEecCCeeeeccc
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVT--CNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~--~~g~~l~~i~pg~F~ge~s 249 (369)
.++++|...-.--.. .. .+.+|++|.+++. .+|+.. .+.||+++--+.
T Consensus 44 ~~~~pg~~~~~H~H~-~~-e~~~vl~G~~~~~~~~~~~~~-~l~~Gd~~~ip~ 93 (145)
T 3ht1_A 44 FEVSPNGSTPPHFHE-WE-HEIYVLEGSMGLVLPDQGRTE-EVGPGEAIFIPR 93 (145)
T ss_dssp EEEEEEEECCCEECS-SC-EEEEEEEECEEEEEGGGTEEE-EECTTCEEEECT
T ss_pred EEECCCCcCCCccCC-Cc-eEEEEEEeEEEEEEeECCEEE-EECCCCEEEECC
Confidence 345566543222222 23 5678999999999 888654 689999876544
No 107
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=58.91 E-value=52 Score=31.15 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=56.2
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
.++.-+-+|+....+... | -++.+++|...|+.+|++. .+.+|+-+--|+ ... ++.++.++|+.++
T Consensus 209 teV~l~G~Ges~~~~~~~--d-~wiWqLEGss~Vt~~~q~~-~L~~~DsLLIpa--------~~~--y~~~r~~gsv~L~ 274 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV--D-VWLWQLEGSSVVTMGGRRL-SLAPDDSLLVLA--------GTS--YAWERTQGSVALS 274 (286)
T ss_dssp EEEEEECSEEEEECCCSS--C-EEEEEEESCEEEEETTEEE-EECTTEEEEECT--------TCC--EEEEECTTCEEEE
T ss_pred eEEEEEcCCccccccCcC--c-EEEEEEcCceEEEECCeEE-eccCCCEEEecC--------CCe--EEEEecCCeEEEE
Confidence 466668889888888885 5 8999999999999999887 488888777665 222 5888999999999
Q ss_pred EeHH
Q psy12113 276 WSRI 279 (369)
Q Consensus 276 w~r~ 279 (369)
+.-+
T Consensus 275 I~~~ 278 (286)
T 2qnk_A 275 VTQD 278 (286)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8643
No 108
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=58.83 E-value=25 Score=29.86 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=38.7
Q ss_pred CcceEEEEEeceEEEEeCC-------eEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHH
Q psy12113 215 ADERLSILLRGKMTVTCND-------THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRI 279 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~~g-------~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~ 279 (369)
+| .+++|++|++++...+ .-.-.+.||+|+-=|- |.. ++..|.++|+++.+-..
T Consensus 50 tD-E~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk---------Gve-H~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 50 TD-EQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA---------ECW-FYSITQKDTKMMYVQDS 110 (140)
T ss_dssp CC-EEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT---------TCE-EEEEECTTCEEEEEEES
T ss_pred CC-eEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC---------Ccc-CcccCCCceEEEEEEeC
Confidence 47 7999999999987531 2234679999886544 211 56678899999988655
No 109
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=58.62 E-value=18 Score=31.55 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=33.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-CeEEEEecCCeee
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-DTHLHYVCPFQFV 245 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-g~~l~~i~pg~F~ 245 (369)
....++++|...-.--. ... .+.+|++|.+.+..+ |+. +.+.||+.+
T Consensus 81 ~~~v~l~PG~~~~~H~H-~~e-E~~~VLeGel~l~ld~ge~-~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRT-NSI-DYGIVLEGEIELELDDGAK-RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCC-SEE-EEEEEEESCEEEECGGGCE-EEECTTCEE
T ss_pred EEEEEECCCCCCCCeec-Cce-EEEEEEeCEEEEEECCCeE-EEECCCCEE
Confidence 45557888875433222 223 588999999999997 665 468999987
No 110
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=55.05 E-value=44 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=26.1
Q ss_pred eEEEEEeceEEEEeCC-eEEEEecCCeeeeccc
Q psy12113 218 RLSILLRGKMTVTCND-THLHYVCPFQFVDSPE 249 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g-~~l~~i~pg~F~ge~s 249 (369)
.+++|++|.+++..+| +. +.+.||+.+--|.
T Consensus 66 E~~~vl~G~~~~~~~~~~~-~~l~~Gd~~~ip~ 97 (134)
T 2o8q_A 66 QLFYVLRGWVEFEYEDIGA-VMLEAGGSAFQPP 97 (134)
T ss_dssp EEEEEEESEEEEEETTTEE-EEEETTCEEECCT
T ss_pred EEEEEEeCEEEEEECCcEE-EEecCCCEEEECC
Confidence 7999999999999987 65 4799999886554
No 111
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=54.78 E-value=12 Score=31.16 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=46.2
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEE--EEecCCeeeeccccccccCCCCCcceeE-EEeeCCeE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHL--HYVCPFQFVDSPEYMSCQNSSDELYQVS-ITAEEDCL 272 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l--~~i~pg~F~ge~s~~~~~~ss~~~~qvT-i~A~edcr 272 (369)
....++++|..+-.-..+ .+ ..++|++|..+.. +|... +.+.+|+++-.|.-.. ++ +.+.++|.
T Consensus 46 ~~~~~~~pG~~~p~H~H~-~~-ee~~VL~G~~~~~-~g~~~~~~~~~~Gd~~~~p~g~~----------H~p~~~~e~~~ 112 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHV-GP-GEYFLTKGKMDVR-GGKAAGGDTAIAPGYGYESANAR----------HDKTEFPVASE 112 (145)
T ss_dssp EEEEEECTTEEECCEEES-SC-EEEEEEEEEEEET-TCGGGTSEEEESSEEEEECTTCE----------ESCCEEEEEEE
T ss_pred EEEEEECCCCCCCccCCC-CC-EEEEEEEeEEEEc-CCCEecceEeCCCEEEEECcCCc----------cCCeECCCCeE
Confidence 356678999988877775 34 6799999999943 44333 5678999998876322 12 33466777
Q ss_pred EEEE
Q psy12113 273 YLCW 276 (369)
Q Consensus 273 vl~w 276 (369)
++..
T Consensus 113 ~l~~ 116 (145)
T 2o1q_A 113 FYMS 116 (145)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 112
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=54.56 E-value=62 Score=25.14 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=35.1
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-CeEEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-DTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-g~~l~~i~pg~F~ge~s 249 (369)
-..+.++|+.-.. . +.+ .+++|++|.+.+..+ |+.. .+.||+.+--++
T Consensus 34 ~~~~~~pg~~~~h--H-~~~-E~~~Vl~G~~~~~i~~g~~~-~l~~GD~i~ip~ 82 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--Y-DTN-ETCYILEGKVEVTTEDGKKY-VIEKGDLVTFPK 82 (101)
T ss_dssp CEEEECSEEEEEE--C-SSC-EEEEEEEEEEEEEETTCCEE-EEETTCEEEECT
T ss_pred EEEEeCCCccccc--C-Cce-EEEEEEeCEEEEEECCCCEE-EECCCCEEEECC
Confidence 3556778875443 2 234 799999999999998 6654 699999886554
No 113
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=54.24 E-value=47 Score=31.71 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=48.4
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---Ce-EEEEecCCeeeeccccccccCCCCCcceeEEEe--eC
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EE 269 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~e 269 (369)
....++++|......-....+ .+++|++|++++..+ |+ ..+.+.||+.+--++... +.+.+ .+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~-E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip~~~~----------H~~~n~~~~ 327 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTH-EWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMG----------HYVENIGDE 327 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSC-EEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCB----------EEEEECSSS
T ss_pred EEEEEECCCcccCceeCCCCC-EEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEECCCCe----------EEEEECCCC
Confidence 345578898887655443224 799999999998864 42 556789999887655321 23333 46
Q ss_pred CeEEEEEeH
Q psy12113 270 DCLYLCWSR 278 (369)
Q Consensus 270 dcrvl~w~r 278 (369)
+++++.+-.
T Consensus 328 ~~~~l~v~~ 336 (385)
T 1j58_A 328 PLVFLEIFK 336 (385)
T ss_dssp CEEEEEEES
T ss_pred CEEEEEEEC
Confidence 788887754
No 114
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=53.66 E-value=39 Score=32.48 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=53.9
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEE-EeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe--eCCeE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTV-TCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EEDCL 272 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV-~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~edcr 272 (369)
+....+++|+..-..-.. .+ .+++|++|+.++ ..+|+. ..+.+|+++--|++.- ....+ .++++
T Consensus 102 ~~~~~l~PG~~~~~H~H~-~~-e~~yVl~G~g~~t~v~g~~-~~l~~GD~~~iP~g~~----------H~~~n~~~~~~~ 168 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHN-QS-ALRFIVEGKGAFTAVDGER-TPMNEGDFILTPQWRW----------HDHGNPGDEPVI 168 (354)
T ss_dssp EEEEEECTTCEEEEEEES-SC-EEEEEEECSSCEEEETTEE-EECCTTCEEEECTTSC----------EEEECCSSSCEE
T ss_pred EEEEEECCCCCcCCeecC-cc-eEEEEEEEEEEEEEECCEE-EEEcCCCEEEECCCCc----------EEeEeCCCCCEE
Confidence 456679999887554443 34 799999999988 667875 4799999997766432 23333 45788
Q ss_pred EEEEeHHHHHHHH
Q psy12113 273 YLCWSRISLDRLL 285 (369)
Q Consensus 273 vl~w~r~~L~~Ll 285 (369)
++.+....+.+.+
T Consensus 169 ~l~v~d~p~~~~l 181 (354)
T 2d40_A 169 WLDGLDLPLVNIL 181 (354)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECchhHhhc
Confidence 8888766655544
No 115
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=52.32 E-value=20 Score=30.64 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=48.0
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEee----CCe
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAE----EDC 271 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~----edc 271 (369)
....++++|..+-.-..+. . ...+|++|..+...+| +...+|+|+-+|.-. +.+..+. ++|
T Consensus 44 v~lvr~~pG~~~p~H~H~g-~-ee~~VL~G~~~~~e~~---~~~~~Gd~~~~P~g~----------~H~~~~~~~~~e~~ 108 (159)
T 3ebr_A 44 ITLLKAPAGMEMPRHHHTG-T-VIVYTVQGSWRYKEHD---WVAHAGSVVYETAST----------RHTPQSAYAEGPDI 108 (159)
T ss_dssp EEEEEECSSCBCCCEEESS-C-EEEEEEESCEEETTSS---CCBCTTCEEEECSSE----------EECEEESSSSSSCE
T ss_pred EEEEEECCCCCcccccCCC-C-EEEEEEEeEEEEeCCC---eEECCCeEEEECCCC----------cceeEeCCCCCCCE
Confidence 4566789999888776643 3 6889999998864333 367899998877621 2455565 789
Q ss_pred EEEEEeHHH
Q psy12113 272 LYLCWSRIS 280 (369)
Q Consensus 272 rvl~w~r~~ 280 (369)
.++..-...
T Consensus 109 ~~~~~~~G~ 117 (159)
T 3ebr_A 109 ITFNIVAGE 117 (159)
T ss_dssp EEEEEEESC
T ss_pred EEEEEecCc
Confidence 888744333
No 116
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=52.28 E-value=27 Score=30.34 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=34.5
Q ss_pred EEEEecCCCeEE----ecCCcC----CcceEEEEEeceEEEEeCCe----EEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYA----IEERTS----ADERLSILLRGKMTVTCNDT----HLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~----~EG~t~----~d~~L~lVlsG~vrV~~~g~----~l~~i~pg~F~ge~s 249 (369)
...++++|...- ...... .+ .+++|++|.+.+..+++ ..+.+.||+.+--++
T Consensus 70 ~~~~l~PG~~~~E~~~~~~H~H~~~~~~-E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~ 133 (190)
T 1x82_A 70 ATTVLYPGKVGKEFFFTKGHFHAKLDRA-EVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPP 133 (190)
T ss_dssp EEEEECCCEETTEECBCCCBBCSSTTCC-EEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECT
T ss_pred EEEEECCCcCCCcccCCCCeECCCCCCC-EEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECC
Confidence 444788887621 111111 13 69999999999998543 356799999886555
No 117
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=51.49 E-value=70 Score=29.18 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=44.1
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
.++++|+.+...=..... ...++++|.++| +|+. +.+|+.+.- +. .. .++++|.++++++.++-
T Consensus 165 ~~l~~g~~~~~~~~~~~~-~~~~v~~G~v~v--~g~~---l~~gd~~~~----~~--~~----~l~l~a~~~a~~Ll~~~ 228 (242)
T 1tq5_A 165 WALLKDEQSVHQIAAERR-VWIQVVKGNVTI--NGVK---ASTSDGLAI----WD--EQ----AISIHADSDSEVLLFDL 228 (242)
T ss_dssp EEECTTCEEEECCCTTCE-EEEEEEESEEEE--TTEE---EETTCEEEE----ES--CS----CEEEEESSSEEEEEEEE
T ss_pred EEECCCCEEEeecCCCcE-EEEEEccCcEEE--CCEE---eCCCCEEEE----CC--CC----eEEEEeCCCCEEEEEEC
Confidence 468999988776543222 456688999887 5643 556665532 11 11 16888999999999986
Q ss_pred HHHHHHHh
Q psy12113 279 ISLDRLLR 286 (369)
Q Consensus 279 ~~L~~Ll~ 286 (369)
..+....+
T Consensus 229 ~~~~~~~~ 236 (242)
T 1tq5_A 229 PPVSGRVE 236 (242)
T ss_dssp CCC-----
T ss_pred CccCChhh
Confidence 55444433
No 118
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=50.88 E-value=35 Score=26.72 Aligned_cols=34 Identities=15% Similarity=0.419 Sum_probs=27.8
Q ss_pred CcceEEEEEeceEEEEeCCeEE-EEecCCeeeeccc
Q psy12113 215 ADERLSILLRGKMTVTCNDTHL-HYVCPFQFVDSPE 249 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~~g~~l-~~i~pg~F~ge~s 249 (369)
.+ .+.+|++|.+++..+|+.- ..+.||+.+-=|+
T Consensus 53 ~~-E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ipa 87 (112)
T 2opk_A 53 QD-EWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPA 87 (112)
T ss_dssp SE-EEEEEEESCEEEEETTCSSCEEECTTEEEEECT
T ss_pred cc-EEEEEEeCeEEEEECCEEEEEEECCCCEEEECC
Confidence 44 7999999999999987751 4699999987665
No 119
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=50.00 E-value=88 Score=27.09 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=37.3
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC------Ce-EEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN------DT-HLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~------g~-~l~~i~pg~F~ge~s 249 (369)
....++++|...-.--....+ .+.+|++|.+++... ++ ..+.+.||+.+--|.
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~-E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~ 133 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRAT-EIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPR 133 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCC-EEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECT
T ss_pred EEEEEECCCCCCCCeECCCCC-EEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECC
Confidence 345678899876544443234 799999999999763 34 267899999886555
No 120
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=48.90 E-value=61 Score=31.97 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=40.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~~l~~i~pg~F~ge~s 249 (369)
+...++++|...-.- .+..+ .+++|++|+.++.. ++...+.+.+||.+--|.
T Consensus 51 ~~~~~l~PGg~~~pH-h~~a~-E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~ 105 (416)
T 1uij_A 51 IVQFQSKPNTILLPH-HADAD-FLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPA 105 (416)
T ss_dssp EEEEEECTTEEEEEE-EESEE-EEEEEEESCEEEEEECSSCEEEEEECTTEEEEECT
T ss_pred EEEEEeccCcCcccc-cCCCc-eEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECC
Confidence 467789999977777 66666 89999999999986 344566899999887654
No 121
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=47.82 E-value=77 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=39.0
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCeE-EEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDTH-LHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~~-l~~i~pg~F~ge~s 249 (369)
+...++++|...-..-.. .+ .+.+|++|++++.. +|+. .+.+.+|+++--|.
T Consensus 81 ~~~~~l~pg~~~~~H~H~-~~-E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~ 136 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHK-EA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPS 136 (385)
T ss_dssp EEEEEECTTCEEEEEEES-SC-EEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECT
T ss_pred EEEEEECCCCCCCCccCC-hh-eEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECC
Confidence 456678999866544443 44 79999999999998 5663 45899999886655
No 122
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=47.43 E-value=35 Score=32.66 Aligned_cols=61 Identities=16% Similarity=0.045 Sum_probs=46.2
Q ss_pred CCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCC-eEEEEEeH--HHHHHHH
Q psy12113 214 SADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEED-CLYLCWSR--ISLDRLL 285 (369)
Q Consensus 214 ~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~ed-crvl~w~r--~~L~~Ll 285 (369)
+.| .+.+|++|.+++..+|+.-+.+.+|+.+=-|+ +. ++++.|.++ .+++++.+ +.+..++
T Consensus 271 ~~~-~~~~vleG~~~i~i~g~~~~~l~~Gd~~~iPa--------g~--~h~~~~~~~~~~~l~~~~g~~g~~~~~ 334 (350)
T 1juh_A 271 PGA-CAFQVQEGRVVVQIGDYAATELGSGDVAFIPG--------GV--EFKYYSEAYFSKVLFVSSGSDGLDQNL 334 (350)
T ss_dssp SSC-EEEEEEESCEEEEETTSCCEEECTTCEEEECT--------TC--CEEEEESSSSEEEEEEEESSSSHHHHH
T ss_pred CCc-EEEEEEeeEEEEEECCeEEEEeCCCCEEEECC--------CC--CEEEEecCCeEEEEEEecCccchhhee
Confidence 455 89999999999999994356899999987666 22 246667655 88888887 6777664
No 123
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=47.27 E-value=36 Score=27.64 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=32.1
Q ss_pred EecCCCeEEecCCcCCcceEEEEEeceEEEEe-CCeEEEEecCCeeeeccc
Q psy12113 200 KLAQGESYAIEERTSADERLSILLRGKMTVTC-NDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 200 ~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~-~g~~l~~i~pg~F~ge~s 249 (369)
+.++|..-....+ .+ .+++|++|++++.. +|+.. .+.|||.+--|.
T Consensus 55 ~~~pG~~~~~~~~--~~-E~~~Vl~G~~~l~~~~g~~~-~l~~GD~~~ip~ 101 (123)
T 3bcw_A 55 ESTSGSFQSNTTG--YI-EYCHIIEGEARLVDPDGTVH-AVKAGDAFIMPE 101 (123)
T ss_dssp EEEEEEEECCCTT--EE-EEEEEEEEEEEEECTTCCEE-EEETTCEEEECT
T ss_pred EECCCceeeEcCC--Cc-EEEEEEEEEEEEEECCCeEE-EECCCCEEEECC
Confidence 4556654433222 14 79999999999998 56654 689999887655
No 124
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=47.20 E-value=16 Score=30.03 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=32.8
Q ss_pred EecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 200 KLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 200 ~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
+..+|..=....+ .| .+++|++|+++++.++-.-..+.||+.+--|.
T Consensus 48 e~tPG~~~~~~~~--~~-E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~ 94 (116)
T 3es4_A 48 MAEPGIYNYAGRD--LE-ETFVVVEGEALYSQADADPVKIGPGSIVSIAK 94 (116)
T ss_dssp EECSEEEEECCCS--EE-EEEEEEECCEEEEETTCCCEEECTTEEEEECT
T ss_pred ecCCceeECeeCC--Cc-EEEEEEEeEEEEEeCCCeEEEECCCCEEEECC
Confidence 4566654443333 34 69999999999998633345699999887665
No 125
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=41.97 E-value=85 Score=31.29 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=39.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---NDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g~~l~~i~pg~F~ge~s 249 (369)
+...++++|...-.. .+..+ .+++|++|+.++.. ++...+.+.+||.+--|.
T Consensus 88 ~~~~~l~Pgg~~~pH-h~~a~-E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~ 142 (445)
T 2cav_A 88 VLEYCSKPNTLLLPH-HSDSD-LLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQA 142 (445)
T ss_dssp EEEEEECSSEEEEEE-EESSE-EEEEEEESEEEEEEEETTEEEEEEEETTEEEEECT
T ss_pred EEEEEECCCcCccCc-CCCCc-eEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECC
Confidence 355678888777666 55555 89999999999875 345677899999887654
No 126
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=41.82 E-value=1.6e+02 Score=27.01 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=43.0
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEe
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWS 277 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~ 277 (369)
..+++|+.+...-.. .. ...+|++|.++|--++.--..+.+|+.+.- +. ++ .++++|.++++++.++
T Consensus 187 ~~L~~g~~~~~~~~~-~~-~~l~v~~G~v~v~g~~~~~~~l~~gd~~~l----~~----~~--~l~l~a~~~a~~LL~d 253 (256)
T 2vec_A 187 IVLDKGESANFQLHG-PR-AYLQSIHGKFHALTHHEEKAALTCGDGAFI----RD----EA--NITLVADSPLRALLID 253 (256)
T ss_dssp EEECTTCEEEEECSS-SE-EEEEEEESCEEEEETTEEEEEECTTCEEEE----ES----CS--EEEEEESSSEEEEEEE
T ss_pred EEECCCCEEEEecCC-Ce-EEEEEEECEEEECCccccceEECCCCEEEE----CC----CC--eEEEEeCCCCEEEEEE
Confidence 368899988777542 22 456678999988532211223677765542 11 11 2688899999999886
No 127
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=40.78 E-value=47 Score=29.07 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=44.9
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe--eCCeEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA--EEDCLY 273 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A--~edcrv 273 (369)
....++++|..+-..... .. .+.+|++|... ++. ....+|+|+-.|.-.. .+.++ .++|.+
T Consensus 127 v~l~~~~pG~~~p~H~H~-g~-E~~~VL~G~f~---de~--~~~~~Gd~~~~p~g~~----------H~p~a~~~~gc~~ 189 (195)
T 2q1z_B 127 ARLLWIPGGQAVPDHGHR-GL-ELTLVLQGAFR---DET--DRFGAGDIEIADQELE----------HTPVAERGLDCIC 189 (195)
T ss_dssp EEEEEECTTCBCCCCCCS-SC-EEEEEEESEEE---CSS--SEEETTCEEEECSSCC----------CCCEECSSSCEEE
T ss_pred EEEEEECCCCCCCCcCCC-Ce-EEEEEEEEEEE---CCc--EEECCCeEEEeCcCCc----------cCCEeCCCCCEEE
Confidence 456678999999888885 44 79999999865 433 2467898887766221 24445 778888
Q ss_pred EEE
Q psy12113 274 LCW 276 (369)
Q Consensus 274 l~w 276 (369)
+..
T Consensus 190 l~~ 192 (195)
T 2q1z_B 190 LAA 192 (195)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 128
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=40.23 E-value=1.3e+02 Score=27.84 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=47.9
Q ss_pred cEEEEecCCCeEE-ecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEE
Q psy12113 196 ATICKLAQGESYA-IEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYL 274 (369)
Q Consensus 196 ~~~r~L~kGe~l~-~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl 274 (369)
..+.++++|..+- .|=.. .+ +-++|++|+..+.-+|... -+.+|+|+=-+++.. -....+-.++++|+
T Consensus 188 ~~~~t~~PG~~~p~~e~H~-~e-h~~~vL~G~g~y~l~~~~~-~V~~GD~i~~~~~~~--------h~~~n~G~e~~~yl 256 (266)
T 4e2q_A 188 IHTMDFQPGEFLNVKEVHY-NQ-HGLLLLEGQGIYRLGDNWY-PVQAGDVIWMAPFVP--------QWYAALGKTRSRYL 256 (266)
T ss_dssp EEEEEECTTCBCSSCCCCS-CC-EEEEEEECEEEEEETTEEE-EEETTCEEEECTTCC--------EEEEEESSSCEEEE
T ss_pred EEEEEECCCcCcCCceEcc-cc-eEEEEEeceEEEEECCEEE-EecCCCEEEECCCCc--------EEEEeCCCCCEEEE
Confidence 4667799999986 46664 33 8999999999999887754 689999886554321 11222234778776
Q ss_pred E
Q psy12113 275 C 275 (369)
Q Consensus 275 ~ 275 (369)
.
T Consensus 257 ~ 257 (266)
T 4e2q_A 257 L 257 (266)
T ss_dssp E
T ss_pred E
Confidence 4
No 129
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=38.72 E-value=1.1e+02 Score=27.83 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=37.3
Q ss_pred EEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 198 ICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 198 ~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
...+++|..|=.--.. .+ ++|+|++|.+.+..+|..-..+.||+.+--++
T Consensus 136 ~v~l~PG~~yP~HsHp-~E-Eiy~VLsG~~e~~v~~g~~~~l~pGd~v~ips 185 (217)
T 4b29_A 136 VGYWGPGLDYGWHEHL-PE-ELYSVVSGRALFHLRNAPDLMLEPGQTRFHPA 185 (217)
T ss_dssp EEEECSSCEEEEEECS-SE-EEEEEEEECEEEEETTSCCEEECTTCEEEECT
T ss_pred EEEECCCCcCCCCCCC-Cc-eEEEEEeCCEEEEECCCCEEecCCCCEEEcCC
Confidence 4557777776665664 44 89999999999999844444689998887665
No 130
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=36.98 E-value=1.2e+02 Score=30.12 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=41.2
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe--C-CeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTC--N-DTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--~-g~~l~~i~pg~F~ge~s 249 (369)
+...++++|...-.- .+..+ .+++|++|+.++.. + +.....+.+||.+--|.
T Consensus 63 ~~~~~l~PGg~~~pH-h~~a~-Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~ 117 (434)
T 2ea7_A 63 VVEFKSKPNTLLLPH-HADAD-FLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPA 117 (434)
T ss_dssp EEEEEECTTEEEEEE-EESEE-EEEEEEESEEEEEEECSSCEEEEEEETTEEEEECT
T ss_pred EEEEEecCCcCccCc-cCCCc-eEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECC
Confidence 567789999988887 66666 89999999999876 2 35667899999887654
No 131
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=33.67 E-value=1.2e+02 Score=27.89 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=35.6
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeC-CeEEEEEe
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEE-DCLYLCWS 277 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~e-dcrvl~w~ 277 (369)
.+++|++|++++..+|+.. .+.+|+.+--++... +++.+.. +++++.+-
T Consensus 241 e~~~vl~G~~~~~i~~~~~-~l~~GD~~~ip~~~~----------H~~~n~~~~~~~l~v~ 290 (337)
T 1y3t_A 241 ETFYCLEGQMTMWTDGQEI-QLNPGDFLHVPANTV----------HSYRLDSHYTKMVGVL 290 (337)
T ss_dssp EEEEEEESCEEEEETTEEE-EECTTCEEEECTTCC----------EEEEECSSSEEEEEEE
T ss_pred EEEEEEeCEEEEEECCEEE-EECCCCEEEECCCCe----------EEEEECCCCeEEEEEE
Confidence 7999999999999998764 689999886555321 3444444 57777664
No 132
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=32.84 E-value=97 Score=27.20 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=39.2
Q ss_pred CcceEEEEEeceEEEEe-C-C-eEEEEecCCeeeeccccccccCCCCCcceeEEEeeC-CeEEEEEeHHHH
Q psy12113 215 ADERLSILLRGKMTVTC-N-D-THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEE-DCLYLCWSRISL 281 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~-~-g-~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~e-dcrvl~w~r~~L 281 (369)
.| .++++++|.+.+.. | | .---.+.+|+++--|.=. +++-+|.+ +|..+.+-|+..
T Consensus 55 ~d-E~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gv----------pH~P~r~~~e~~~lviE~~r~ 114 (174)
T 1yfu_A 55 LE-EFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHV----------RHSPQRPEAGSACLVIERQRP 114 (174)
T ss_dssp SC-EEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTC----------CEEEEBCCTTCEEEEEEECCC
T ss_pred Cc-eEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCC----------CcCccccCCCCEEEEEEeCCC
Confidence 46 79999999999886 3 4 223468999999876522 24555666 777777766543
No 133
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=32.39 E-value=32 Score=31.41 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=32.6
Q ss_pred EecCCCeEEecCCcCCcceEEEEEeceEEEEe--------CCe-----------EEEEecCCeeeeccc
Q psy12113 200 KLAQGESYAIEERTSADERLSILLRGKMTVTC--------NDT-----------HLHYVCPFQFVDSPE 249 (369)
Q Consensus 200 ~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~--------~g~-----------~l~~i~pg~F~ge~s 249 (369)
.+++|...-.--....+ .+++|++|.+++.. +|+ ..+.+.||+++--|.
T Consensus 49 ~~~PG~~~~~H~H~~~~-E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~ 116 (239)
T 2xlg_A 49 QIPPGGGPMPHIHYFIN-EWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPN 116 (239)
T ss_dssp EECTTCSCCSEEESSEE-EEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECT
T ss_pred EECCCCcCCCeECCCcc-EEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECC
Confidence 56777543111111134 69999999999988 665 156899999886555
No 134
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=32.25 E-value=91 Score=30.64 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=56.6
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEE-EeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe---eCCe
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTV-TCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA---EEDC 271 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV-~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A---~edc 271 (369)
+....+++|+.+-..-.. .+ .+++|++|+-.. ..+|+.+ .+.+|+++--|.+.. ..+.. .++.
T Consensus 125 a~~~~l~PG~~~~~HrH~-~~-ev~~IleG~G~~t~v~G~~~-~~~~GD~i~~P~g~~----------H~~~N~~gde~l 191 (394)
T 3bu7_A 125 SGIQTMKAGERAGAHRHA-AS-ALRFIMEGSGAYTIVDGHKV-ELGANDFVLTPNGTW----------HEHGILESGTEC 191 (394)
T ss_dssp EEEEEECTTCBCCCEEES-SC-EEEEEEECSCEEEEETTEEE-EECTTCEEEECTTCC----------EEEEECTTCCCE
T ss_pred EEEEEECCCCCcCCccCC-cc-eEEEEEEeeEEEEEECCEEE-EEcCCCEEEECcCCC----------EEEEcCCCCCCE
Confidence 577889999999887775 34 799999999865 5577765 699999998776442 23333 5677
Q ss_pred EEEEEeHHHHHHHHhc
Q psy12113 272 LYLCWSRISLDRLLRH 287 (369)
Q Consensus 272 rvl~w~r~~L~~Ll~~ 287 (369)
.+++..-.-|...+..
T Consensus 192 ~~l~v~d~Pl~~~l~~ 207 (394)
T 3bu7_A 192 IWQDGLDIPLTNCLEA 207 (394)
T ss_dssp EEEEEECHHHHHHTTC
T ss_pred EEEEcccchhhhhcCc
Confidence 8887555555555544
No 135
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=31.41 E-value=2.3e+02 Score=24.66 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=37.0
Q ss_pred ccEEEEecCCCeEEecCCcC------CcceEEEEEeceEEEEeCCeEE--------------------EEecCCeeeecc
Q psy12113 195 EATICKLAQGESYAIEERTS------ADERLSILLRGKMTVTCNDTHL--------------------HYVCPFQFVDSP 248 (369)
Q Consensus 195 ~~~~r~L~kGe~l~~EG~t~------~d~~L~lVlsG~vrV~~~g~~l--------------------~~i~pg~F~ge~ 248 (369)
+.+...+.+|+..-..=... .. .=..+.+|.++++.+|... ..+.||+.+--|
T Consensus 54 ~~K~l~l~pGQ~~P~H~H~~~~~~~gK~-E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIp 132 (175)
T 2y0o_A 54 CSKELVLFPGQTCPEHRHPPVDGQEGKQ-ETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIP 132 (175)
T ss_dssp EEEEEEECTTCEEEEEECCCCTTSCCCC-EEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEEC
T ss_pred eEEEEEECCCCcCCceECCCCCCCCCCc-eeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEEC
Confidence 35777888999887766654 44 3444999999999875432 367888777644
No 136
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=30.52 E-value=49 Score=21.35 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12113 142 VWNMILAVVNVSHAGAL 158 (369)
Q Consensus 142 ~Wn~lf~~iN~~~~~~L 158 (369)
.|..++++||++..++.
T Consensus 14 ~WalllLaINflVAayY 30 (35)
T 1jb0_X 14 FWAVLLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 69999999999987765
No 137
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=30.52 E-value=44 Score=28.79 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.8
Q ss_pred eEEEEEe--ceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 218 RLSILLR--GKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 218 ~L~lVls--G~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
.+++|++ |..++..+|+.. .+.||+++--|.-. . ..+. .+++++++.-
T Consensus 68 E~~yVLe~~G~g~v~idge~~-~l~~GD~v~IPpg~------~----H~i~--g~l~~L~I~~ 117 (157)
T 4h7l_A 68 EIYVVLDHAAHATIELNGQSY-PLTKLLAISIPPLV------R----HRIV--GEATIINIVS 117 (157)
T ss_dssp EEEEEEEECTTCEEEETTEEE-ECCTTEEEEECTTC------C----EEEE--SCEEEEEEEE
T ss_pred EEEEEEecCcEEEEEECCEEE-EeCCCCEEEECCCC------e----EeeE--CCEEEEEEEC
Confidence 6999999 999999999864 79999988765411 1 2333 4788888753
No 138
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=30.34 E-value=1.6e+02 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeH
Q psy12113 203 QGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSR 278 (369)
Q Consensus 203 kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r 278 (369)
+|+....+ .+-| ...+|++|.+++..+|+.++ ++||+.+--|.=. .++.++.++++.+.-..
T Consensus 55 ~g~~~v~~--~p~d-E~~~VleG~~~lt~~g~~~~-~~~Gd~~~ip~G~----------~~~w~~~~~~~~~y~~~ 116 (238)
T 3myx_A 55 GTALSVEA--YPYT-EMLVMHRGSVTLTSGTDSVT-LSTGESAVIGRGT----------QVRIDAQPESLWAFCAS 116 (238)
T ss_dssp CSEEEESS--CSSE-EEEEEEESEEEEEETTEEEE-EETTCEEEECTTC----------CEEEEECTTEEEEEEEE
T ss_pred cccccccc--CCCc-EEEEEEEeEEEEECCCeEEE-EcCCCEEEECCCC----------EEEEEecCCeEEEEEec
Confidence 55555533 3346 79999999999988888775 8999877654411 15666677766655443
No 139
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=27.72 E-value=39 Score=26.06 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=35.7
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC-Ce-EEEEecCCeeeeccc
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCN-DT-HLHYVCPFQFVDSPE 249 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~-g~-~l~~i~pg~F~ge~s 249 (369)
+..+++||+.+-.+-..... ..++|++|.++|..+ |. ....+.+|+.+--|.
T Consensus 20 ~r~~i~PG~~~~~H~H~~~~-e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~ 73 (98)
T 3lag_A 20 TEWRLPPGSATGHHTHGMDY-VVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKA 73 (98)
T ss_dssp EEEEECTTEECCSEECCSCE-EEEESSCBC-CEECTTSCEECCCBCTTCCEEECT
T ss_pred EEEEECCCCccCcEECCCcE-EEEEEeccEEEEEeCCCceEEEEecCCcEEEEcC
Confidence 44568999998888775333 588889999999985 33 334567887665543
No 140
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=27.36 E-value=1.9e+02 Score=25.77 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=42.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEe-eCCeEEE
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITA-EEDCLYL 274 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A-~edcrvl 274 (369)
....++++|+.+..... ... ++ ||++|.+. -++. ...+|.|+-.|.-. +.+++| .++|+++
T Consensus 148 v~l~r~~~G~~~~~~~h-gG~-Ei-lVL~G~~~--d~~~---~~~~GsWlR~P~gs----------~h~~~ag~~g~~i~ 209 (223)
T 3o14_A 148 VTHRKLEPGANLTSEAA-GGI-EV-LVLDGDVT--VNDE---VLGRNAWLRLPEGE----------ALSATAGARGAKIW 209 (223)
T ss_dssp EEEEEECTTCEEEECCS-SCE-EE-EEEEEEEE--ETTE---EECTTEEEEECTTC----------CEEEEEEEEEEEEE
T ss_pred EEEEEECCCCccCCCCC-CcE-EE-EEEEeEEE--ECCc---eECCCeEEEeCCCC----------ccCcEECCCCeEEE
Confidence 45677999999998887 443 56 99999965 2332 35788887766632 246666 7888876
Q ss_pred E
Q psy12113 275 C 275 (369)
Q Consensus 275 ~ 275 (369)
.
T Consensus 210 ~ 210 (223)
T 3o14_A 210 M 210 (223)
T ss_dssp E
T ss_pred E
Confidence 4
No 141
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=26.73 E-value=75 Score=27.23 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=35.7
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccc
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPE 249 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s 249 (369)
....++++|..+-....+ .. ...+|++|..+.. ++.. ..+.+|+++-+|.
T Consensus 45 v~lvr~~pG~~~p~H~H~-g~-ee~~VL~G~f~~~-~~~~-~~~~aGd~~~~P~ 94 (165)
T 3cjx_A 45 VMRASFAPGLTLPLHFHT-GT-VHMYTISGCWYYT-EYPG-QKQTAGCYLYEPG 94 (165)
T ss_dssp EEEEEECTTCBCCEEEES-SC-EEEEEEESEEEET-TCTT-SCEETTEEEEECT
T ss_pred EEEEEECCCCcCCcccCC-CC-EEEEEEEEEEEEC-CCce-EEECCCeEEEeCC
Confidence 456678999998888775 34 6899999999862 2101 2357888888776
No 142
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=26.15 E-value=1.6e+02 Score=25.78 Aligned_cols=56 Identities=9% Similarity=-0.093 Sum_probs=39.7
Q ss_pred CcceEEEEEeceEEEEe-C-C----e-EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHH
Q psy12113 215 ADERLSILLRGKMTVTC-N-D----T-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISL 281 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~-~-g----~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L 281 (369)
.| .++++++|.+.+.. | | + .--.|.+|+++--|.-. +++-++.++|..+.+-|++.
T Consensus 54 ~e-E~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gv----------pHsP~r~~e~v~lviErkR~ 116 (176)
T 1zvf_A 54 TP-EWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNV----------PHSPVRFADTVGIVVEQDRP 116 (176)
T ss_dssp SC-EEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTC----------CEEEEECTTCEEEEEEECCC
T ss_pred Cc-eEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCC----------CcCCcccCCcEEEEEEecCC
Confidence 35 79999999999876 3 5 1 22468999999876522 24555677888888877654
No 143
>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}
Probab=24.24 E-value=2.6e+02 Score=25.74 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=44.4
Q ss_pred EEecCCCeEEecCCcCCcceEEEEEeceEEEEeCC--eEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 199 CKLAQGESYAIEERTSADERLSILLRGKMTVTCND--THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 199 r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g--~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
..+++|+.+...=..... ..-++++|.++| +| +. +.+++.+. ++.. ...+.-.++++|.++++++.+
T Consensus 172 ~~L~~g~~~~~~~~~~~~-~~lyv~~G~v~v--~g~~~~---l~~~d~~~----~~~~-~~~~~~~l~l~a~~~a~~Ll~ 240 (277)
T 2p17_A 172 MIVEPGTTVVQDLPGHYN-GFLYILEGSGVF--GADNIE---GKAGQALF----FSRH-NRGEETELNVTAREKLRLLLY 240 (277)
T ss_dssp EEECTTCEEEEEEETTCE-EEEEEEESEEEE--TTTTEE---EETTEEEE----ECCC-CTTCEEEEEEEESSSEEEEEE
T ss_pred EEECCCCEEEeccCCCCE-EEEEEEeCeEEE--CCCceE---eCCCcEEE----EcCC-CCCccceEEEEeCCCcEEEEE
Confidence 468899888655322222 677889999877 44 43 45665443 1100 000001368889999999999
Q ss_pred eHHHHH
Q psy12113 277 SRISLD 282 (369)
Q Consensus 277 ~r~~L~ 282 (369)
.=+-+.
T Consensus 241 ~G~Pl~ 246 (277)
T 2p17_A 241 AGEPVN 246 (277)
T ss_dssp EECCCC
T ss_pred eccccC
Confidence 877663
No 144
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=21.91 E-value=1.2e+02 Score=27.27 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=44.3
Q ss_pred EEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEE
Q psy12113 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCW 276 (369)
Q Consensus 197 ~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w 276 (369)
...++++|..+-.-..+ .. ...+|++|... |+. ....||+|+-.|.-. +.+..|.++|.++.-
T Consensus 46 ~lvr~~pG~~~p~H~H~-g~-Ee~~VL~G~f~---d~~--~~~~~Gd~~~~P~g~----------~H~p~a~~gc~~~vk 108 (223)
T 3o14_A 46 SIVRYAPGSRFSAHTHD-GG-EEFIVLDGVFQ---DEH--GDYPAGTYVRNPPTT----------SHVPGSAEGCTIFVK 108 (223)
T ss_dssp EEEEECTTEECCCEECT-TC-EEEEEEEEEEE---ETT--EEEETTEEEEECTTC----------EECCEESSCEEEEEE
T ss_pred EEEEECCCCCcccccCC-CC-EEEEEEEeEEE---ECC--eEECCCeEEEeCCCC----------ccccEeCCCCEEEEE
Confidence 45678999888776664 34 68999999975 332 246788888776521 134456899998887
Q ss_pred e
Q psy12113 277 S 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 109 ~ 109 (223)
T 3o14_A 109 L 109 (223)
T ss_dssp E
T ss_pred e
Confidence 6
No 145
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=21.39 E-value=1.1e+02 Score=24.38 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=22.7
Q ss_pred eEEEEEeceEEEEeCCeEEEEecCCeeeec
Q psy12113 218 RLSILLRGKMTVTCNDTHLHYVCPFQFVDS 247 (369)
Q Consensus 218 ~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge 247 (369)
.+.++++|..++..+|+.. .+.||+.+=-
T Consensus 40 ~i~~v~~G~~~~~i~~~~~-~l~~Gd~~~i 68 (164)
T 2arc_A 40 ILNLTIRGQGVVKNQGREF-VCRPGDILLF 68 (164)
T ss_dssp EEEEEEEECEEEEETTEEE-EECTTCEEEE
T ss_pred EEEEEEEeEEEEEECCEEE-EecCCeEEEE
Confidence 5889999999999988755 4677766543
No 146
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.21 E-value=1.7e+02 Score=29.35 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=46.4
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---CeE--EEEecCCeeeeccccccccCCCCCcceeEEEe-eC
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DTH--LHYVCPFQFVDSPEYMSCQNSSDELYQVSITA-EE 269 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~~--l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A-~e 269 (369)
+....+++|.....-=.+.++ .+++|++|.+++... |.. -..+.||+.+--|.-. ++.+.+ .+
T Consensus 340 ~~~v~l~pGa~~~pH~Hp~a~-Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~----------~H~~~ng~~ 408 (476)
T 1fxz_A 340 AEFGSLRKNAMFVPHYNLNAN-SIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNF----------VVAARSQSD 408 (476)
T ss_dssp EEEEEECTTCEEEEEEETTCC-EEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTC----------EEEEEECST
T ss_pred EEEEEecCCceecceECCCCC-EEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCC----------eEEEEeCCC
Confidence 456678888877665554345 799999999999863 333 2459999988655421 233333 34
Q ss_pred CeEEEEEe
Q psy12113 270 DCLYLCWS 277 (369)
Q Consensus 270 dcrvl~w~ 277 (369)
++.++++.
T Consensus 409 ~l~~l~f~ 416 (476)
T 1fxz_A 409 NFEYVSFK 416 (476)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 56677765
No 147
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=20.46 E-value=2.7e+02 Score=21.84 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=43.7
Q ss_pred EecCCCeEEecCCcCCcceEEEEEeceEEEEeCCe-EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEE
Q psy12113 200 KLAQGESYAIEERTSADERLSILLRGKMTVTCNDT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLC 275 (369)
Q Consensus 200 ~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~ 275 (369)
...||+.=+.-+++ ...=|++|.++|...|. .-..+.+|+-|.=|+ ... ..++..+++.|++
T Consensus 29 Vm~pGeytF~T~~~----E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpa--------ns~--F~l~v~~~~~YlC 91 (94)
T 2oyz_A 29 VMLPGEYTFGTQAP----ERMTVVKGALVVKRVGEADWTTYSSGESFDVEG--------NSS--FELQVKDATAYLC 91 (94)
T ss_dssp EECSEEEEEEESSC----EEEEEEESEEEEEETTCSSCEEEETTCEEEECS--------SEE--EEEEESSCEEEEE
T ss_pred EEeceEEEEcCCCe----EEEEEEEeEEEEEcCCCCcCEEECCCCEEEECC--------CCE--EEEEEcccEeEEE
Confidence 46788866666653 47889999999998765 445677888776555 222 3677788888876
No 148
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.18 E-value=2.4e+02 Score=26.62 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=42.1
Q ss_pred CcceEEEEEeceEEEEe-C-Ce-EEEEecCCeeeeccccccccCCCCCcceeEEEeeCCeEEEEEeHHHHH
Q psy12113 215 ADERLSILLRGKMTVTC-N-DT-HLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLD 282 (369)
Q Consensus 215 ~d~~L~lVlsG~vrV~~-~-g~-~l~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~ 282 (369)
.| .++++++|.+.+-. | |. .--.|++|+++=-|.-. +++-+|.++|..+++-|++..
T Consensus 51 ~d-E~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv----------~HsP~r~~et~gLviE~~R~~ 110 (286)
T 2qnk_A 51 GE-EVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARV----------PHSPQRFANTVGLVVERRRLE 110 (286)
T ss_dssp SC-EEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTC----------CEEEEECTTCEEEEEEECCCT
T ss_pred CC-eEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCC----------CcCCcccCCeEEEEEeecCCC
Confidence 35 79999999999875 4 63 22468999998766522 356778889999999877654
No 149
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=20.06 E-value=1.8e+02 Score=29.32 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=47.2
Q ss_pred cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---Ce-EE-EEecCCeeeeccccccccCCCCCcceeEEEe-eC
Q psy12113 196 ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---DT-HL-HYVCPFQFVDSPEYMSCQNSSDELYQVSITA-EE 269 (369)
Q Consensus 196 ~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g~-~l-~~i~pg~F~ge~s~~~~~~ss~~~~qvTi~A-~e 269 (369)
+....+++|..+..-=.+.++ .+++|++|.+++... |. .+ ..+.||+++=-|.-. ++.+.| .+
T Consensus 369 ~a~v~l~pG~~~~pH~Hp~a~-Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vvP~G~----------~H~~~n~~e 437 (493)
T 2d5f_A 369 AQYVVLYRNGIYSPHWNLNAN-SVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVVPQNF----------VVAEQGGEQ 437 (493)
T ss_dssp EEEEEECTTCEEEEEEESSCC-EEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTC----------EEEEEEEEE
T ss_pred EEEEEccCCceeeeeECCCCC-EEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEECCCC----------eEeeeeCCC
Confidence 466678889877665554345 799999999999863 33 33 469999988765522 122223 25
Q ss_pred CeEEEEEe
Q psy12113 270 DCLYLCWS 277 (369)
Q Consensus 270 dcrvl~w~ 277 (369)
+++++++-
T Consensus 438 ~~~~l~~~ 445 (493)
T 2d5f_A 438 GLEYVVFK 445 (493)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 67777774
Done!