RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12113
(369 letters)
>gnl|CDD|203101 pfam04831, Popeye, Popeye protein conserved region. The function
of Popeye proteins is not well understood. They are
predominantly expressed in cardiac and skeletal muscle.
This family represents a conserved region which includes
three potential transmembrane domains.
Length = 154
Score = 152 bits (387), Expect = 2e-45
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 3/145 (2%)
Query: 170 ELTELYIRVFNPVKISKKQFKELT--SEATICKLAQGESYAIEERTSADERLSILLRGKM 227
EL LY +F P+ + + FKE+T E + L +G++YA+E +T D RLS+LL G++
Sbjct: 1 ELEALYKALFLPLHVPLEVFKEITGCFECEVHTLKKGQTYAVEGKTPID-RLSLLLSGRI 59
Query: 228 TVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRH 287
V+ + LHY+ P QF+DSPE+ S + S + +QV++TA+ DC YL W R L LL
Sbjct: 60 RVSQDGQFLHYIFPHQFLDSPEWESLRPSEEGKFQVTLTADTDCRYLSWRRKRLYLLLAK 119
Query: 288 RPMLKSVFNSLIGKDITQKLYSLNE 312
+ +F+ L+G DI +KLYSLN+
Sbjct: 120 ERYIARLFSVLLGYDIAEKLYSLND 144
Score = 52.7 bits (127), Expect = 2e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 61 ELTELYIRVFNPVKISKKQFKELT--SEATICKLAQGESYAIEERTSADERLSILLRGKL 118
EL LY +F P+ + + FKE+T E + L +G++YA+E +T D RLS+LL G++
Sbjct: 1 ELEALYKALFLPLHVPLEVFKEITGCFECEVHTLKKGQTYAVEGKTPID-RLSLLLSGRI 59
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.
Length = 91
Score = 33.0 bits (76), Expect = 0.035
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 215 ADERLSILLRGKMTVTCND-----THLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEE 269
+ L I+L GK+ V D L ++ P F + E ++ A
Sbjct: 16 PADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLG-----GEPRSATVVALT 70
Query: 270 DCLYLCWSRISLDRLLRHRP 289
D L R LL P
Sbjct: 71 DSELLVIPREDFLELLEQDP 90
>gnl|CDD|218352 pfam04962, KduI, KduI/IolB family. This family includes the 5-keto
4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is
involved in pectin degradation. This family aldo
includes bacterial Myo-inositol catabolism (IolB)
proteins. The Bacillus subtilis inositol operon
(iolABCDEFGHIJ) is involved in myo-inositol catabolism.
Glucose repression of the iol operon induced by inositol
is exerted through catabolite repression mediated by
CcpA and the iol induction system mediated by IolR. The
exact function of IolB is unknown. Members of this
family possess a Cupin like structure.
Length = 261
Score = 34.5 bits (80), Expect = 0.054
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 197 TICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSC-QN 255
++ +LA GES E T E +LL GK TV+ F + MS +
Sbjct: 30 SVLRLAAGESL--ELETGDREVCVVLLTGKATVSGGG--------ETFEELGGRMSVFEG 79
Query: 256 SSDELY-----QVSITAEEDC-LYLC 275
D +Y +V+ITA D + +C
Sbjct: 80 PPDAVYVPKGARVTITALTDAEVAVC 105
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and
regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms].
Length = 214
Score = 31.3 bits (71), Expect = 0.63
Identities = 14/63 (22%), Positives = 21/63 (33%)
Query: 257 SDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIST 316
+ S A D L R LL P L L+ + + Q L L+ L
Sbjct: 82 GGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLSLLARK 141
Query: 317 NAQ 319
+ +
Sbjct: 142 DVE 144
>gnl|CDD|226241 COG3718, IolB, Uncharacterized enzyme involved in inositol
metabolism [Carbohydrate transport and metabolism].
Length = 270
Score = 29.6 bits (67), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 200 KLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLH 237
+LA GES E T ER +L+ GK TV+ + +
Sbjct: 35 RLAAGESA--TEETGDRERCLVLVTGKATVSAHGSTFG 70
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 434
Score = 28.8 bits (65), Expect = 4.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 22 AGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRV 69
G+ + + ++ IL +V AG L S+F IEL LY+ +
Sbjct: 311 EGLKISLKFSLIYGAILGIVLALFAGWLASLFSAEPEVIELITLYLLI 358
Score = 28.8 bits (65), Expect = 4.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 131 AGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRV 178
G+ + + ++ IL +V AG L S+F IEL LY+ +
Sbjct: 311 EGLKISLKFSLIYGAILGIVLALFAGWLASLFSAEPEVIELITLYLLI 358
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO sensor. In all
cases binding of the effector leads to conformational
changes and the ability to activate transcription.
Cyclic nucleotide-binding domain similar to CAP are also
present in cAMP- and cGMP-dependent protein kinases
(cAPK and cGPK) and vertebrate cyclic nucleotide-gated
ion-channels. Cyclic nucleotide-monophosphate binding
domain; proteins that bind cyclic nucleotides (cAMP or
cGMP) share a structural domain of about 120 residues;
the best studied is the prokaryotic catabolite gene
activator, CAP, where such a domain is known to be
composed of three alpha-helices and a distinctive
eight-stranded, antiparallel beta-barrel structure;
three conserved glycine residues are thought to be
essential for maintenance of the structural integrity of
the beta-barrel; CooA is a homodimeric transcription
factor that belongs to CAP family; cAMP- and
cGMP-dependent protein kinases (cAPK and cGPK) contain
two tandem copies of the cyclic nucleotide-binding
domain; cAPK's are composed of two different subunits, a
catalytic chain and a regulatory chain, which contains
both copies of the domain; cGPK's are single chain
enzymes that include the two copies of the domain in
their N-terminal section; also found in vertebrate
cyclic nucleotide-gated ion-channels.
Length = 115
Score = 27.3 bits (61), Expect = 6.3
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 258 DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLK 292
+ ++ A D L R RLL+ P L
Sbjct: 77 NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELA 111
>gnl|CDD|107303 cd06308, PBP1_sensor_kinase_like, Periplasmic binding domain of
two-component sensor kinase signaling systems.
Periplasmic binding domain of two-component sensor
kinase signaling systems, some of which are fused with a
C-terminal histidine kinase A domain (HisK) and/or a
signal receiver domain (REC). Members of this group
share homology with a family of pentose/hexose
sugar-binding proteins of the type I periplasmic binding
protein superfamily and are predicted to be involved in
sensing of environmental stimuli; their substrate
specificities, however, are not known in detail.
Length = 270
Score = 28.0 bits (63), Expect = 7.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 320 NKDEPWRHKMNRSVSVDAVN 339
N +PWR MN + +A N
Sbjct: 8 NLADPWRAAMNDEIQREASN 27
>gnl|CDD|227529 COG5202, COG5202, Predicted membrane protein [Function unknown].
Length = 512
Score = 28.0 bits (62), Expect = 9.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 15 FLISAFWAGVHVCFYDAFV 33
F ISA W G++ +Y F+
Sbjct: 359 FAISALWHGINPGYYLTFL 377
Score = 28.0 bits (62), Expect = 9.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 124 FLISAFWAGVHVCFYDAFV 142
F ISA W G++ +Y F+
Sbjct: 359 FAISALWHGINPGYYLTFL 377
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 27.8 bits (62), Expect = 9.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 309 SLNELISTNAQNKDEPWRHKMNRSVSVDAVNTSSRGQVRSSNWR 352
+LN+ QN DE R M +S S G V S+NW+
Sbjct: 297 ALNKFFREIYQNADEDTRRAMMKSF------VESNGTVLSTNWK 334
>gnl|CDD|215288 PLN02525, PLN02525, phosphatidic acid phosphatase family protein.
Length = 352
Score = 27.8 bits (62), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 11 LAVGFLISAFWAGVHVCFYDAFV 33
LA+G +I AFW V + DAF+
Sbjct: 150 LAIGLVILAFWLTVD-EYVDAFI 171
Score = 27.8 bits (62), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 120 LAVGFLISAFWAGVHVCFYDAFV 142
LA+G +I AFW V + DAF+
Sbjct: 150 LAIGLVILAFWLTVD-EYVDAFI 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.133 0.394
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,001,336
Number of extensions: 1723793
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1615
Number of HSP's successfully gapped: 29
Length of query: 369
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 271
Effective length of database: 6,590,910
Effective search space: 1786136610
Effective search space used: 1786136610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)