RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12113
(369 letters)
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 39.7 bits (92), Expect = 9e-05
Identities = 13/118 (11%), Positives = 25/118 (21%), Gaps = 9/118 (7%)
Query: 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQ 243
+ E+ + G D ++ T N L
Sbjct: 22 LGPAVLVEIVRALRARTVPAGA-VICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAF-- 78
Query: 244 FVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGK 301
+ S E +++A L L P + +F +
Sbjct: 79 ------FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 36.3 bits (83), Expect = 0.001
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 1/108 (0%)
Query: 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQ 243
+ K + + + G+ + + DE IL + + +V +
Sbjct: 13 LDKWERLTVADALEPVQFEDGQ-KIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGR 71
Query: 244 FVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPML 291
S + + ++ A + R +R+L +
Sbjct: 72 LGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDI 119
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 33.2 bits (75), Expect = 0.020
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 183 KISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPF 242
+ + ++ GE I++ D ++ +G+M V N+ V
Sbjct: 30 HLDDNERSDIFDAMFPVSFIAGE-TVIQQGDEGDN-FYVIDQGEMDVYVNNEWATSVGEG 87
Query: 243 QFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLK 292
+ ++ A+ + R S R+L + K
Sbjct: 88 GSFGELALIY-----GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 132
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 33.2 bits (75), Expect = 0.021
Identities = 9/135 (6%), Positives = 34/135 (25%), Gaps = 4/135 (2%)
Query: 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQ 243
+ + ++ GE + ++ + ++T+
Sbjct: 13 LEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAV 72
Query: 244 FVDSPEY----MSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLI 299
+ +++ S A L + +RLL + +
Sbjct: 73 EIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 132
Query: 300 GKDITQKLYSLNELI 314
+ + + +++
Sbjct: 133 EEQLVALFGTNMDIV 147
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 32.0 bits (72), Expect = 0.039
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 3/110 (2%)
Query: 183 KISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPF 242
+ +Q ++ + +GE + I++ D I D V +
Sbjct: 26 NLDPEQMSQVLDAMFEKLVKEGE-HVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNY 84
Query: 243 QFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLK 292
S ++ + +ITA R++ R++ K
Sbjct: 85 DNRGSFGELALM--YNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKK 132
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 32.1 bits (72), Expect = 0.049
Identities = 8/109 (7%), Positives = 20/109 (18%), Gaps = 1/109 (0%)
Query: 183 KISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPF 242
K +++ L +G + ++L +
Sbjct: 34 KFHPNLLRQICLCGYYENLEKGI-TLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTI 92
Query: 243 QFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPML 291
+ + +I E L + L
Sbjct: 93 CTLGIGTAFGESILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY 141
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 28.9 bits (63), Expect = 0.76
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 221 ILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRIS 280
+ G ++V + + ++ S+ A+ C S +
Sbjct: 114 FIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGR-----RTASVRADTYCRLYSLSVDN 168
Query: 281 LDRLLRHRPMLKSVFNSLIGKDITQ 305
+ +L PM++ F ++ + +
Sbjct: 169 FNEVLEEYPMMRRAFETVAIDRLDR 193
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2
protein PsbD2 {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 340
Score = 26.7 bits (59), Expect = 5.2
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 112 ILLRGKLLLAVGFLISAFWAGVHVCFYD-----AFVWNMILAVVNVS--HAGALISIFLP 164
ILL LA+G ++ + N + V+ G + +
Sbjct: 23 ILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWG 82
Query: 165 PALSIELTE 173
P + T
Sbjct: 83 PEAQGDFTR 91
Score = 25.9 bits (57), Expect = 7.8
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 9 LLLAVGFLISAFWAGVHVCFYD-----AFVWNMILAVVNVS--HAGALISIFLPPALSIE 61
LA+G ++ + N + V+ G + + P +
Sbjct: 29 AYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGD 88
Query: 62 LTE 64
T
Sbjct: 89 FTR 91
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 26.2 bits (58), Expect = 7.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 233 DTHLHYVCPFQ 243
DTH+H++ P Q
Sbjct: 4 DTHVHFINPDQ 14
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 26.2 bits (58), Expect = 8.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 233 DTHLHYVCPFQ 243
DTH+H++ P Q
Sbjct: 3 DTHIHFISPQQ 13
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 25.8 bits (57), Expect = 8.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 233 DTHLHYVCPFQ 243
DTH+H++CP Q
Sbjct: 3 DTHIHWICPQQ 13
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 25.7 bits (55), Expect = 8.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 66 YIRVFNPVKISKKQFKE 82
Y RVFNPV ++ E
Sbjct: 193 YFRVFNPVLQGERHDPE 209
Score = 25.7 bits (55), Expect = 8.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 175 YIRVFNPVKISKKQFKE 191
Y RVFNPV ++ E
Sbjct: 193 YFRVFNPVLQGERHDPE 209
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.133 0.394
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,265,862
Number of extensions: 55426
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 14
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)