BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12115
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + QS ANVRALTYCDLH IKRD L +VL+FY AF++SF+RNL+L
Sbjct: 91 LGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 150
Query: 61 TYNLRHR 67
TYNLR R
Sbjct: 151 TYNLRKR 157
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRKRDSINLFVS 77
G+S ++ + L I+ D ++ +L F + F + L + + +
Sbjct: 65 GESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVR--------- 115
Query: 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKRD L +VL+FY AF++SF+RNL+LTYNLR R+V
Sbjct: 116 ------ALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIV 159
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 1 MSKGDVFG-DSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL 59
+ KGD+ G DS K+ + ++ ANV+ALTYCDL I L EVL Y +A F +
Sbjct: 139 LGKGDLIGSDSLTKEQVI-KTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQ 197
Query: 60 --LTYNLRH 66
LTYNLR
Sbjct: 198 HDLTYNLRE 206
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLRH 124
LTYCDL I L EVL Y +A F + LTYNLR
Sbjct: 165 LTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLRE 206
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 154 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 190
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 148 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 184
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 154 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 190
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 154 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 190
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 151 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 187
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 151 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 187
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 151 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 187
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 149 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 185
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A VRA TYC L+++ D EVL+ Y +F
Sbjct: 148 GRRTARVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 184
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 151 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPXXRRAF 187
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TY L+++ D EVL+ Y +F
Sbjct: 153 GRRTASVRADTYSRLYSLSVDNFNEVLEEYPMMRRAF 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,929,170
Number of Sequences: 62578
Number of extensions: 131469
Number of successful extensions: 365
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 28
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)