BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12115
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02280|KCNAE_DROME Potassium voltage-gated channel protein eag OS=Drosophila
melanogaster GN=eag PE=1 SV=2
Length = 1174
Score = 133 bits (335), Expect = 4e-31, Method: Composition-based stats.
Identities = 59/67 (88%), Positives = 63/67 (94%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWKD+AVGQSAANVRALTYCDLH IKRD+LLEVLDFY AFANSFARNL+L
Sbjct: 628 LGKGDVFGDQFWKDSAVGQSAANVRALTYCDLHAIKRDKLLEVLDFYSAFANSFARNLVL 687
Query: 61 TYNLRHR 67
TYNLRHR
Sbjct: 688 TYNLRHR 694
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKRD+LLEVLDFY AFANSFARNL+LTYNLRHRL+
Sbjct: 654 LTYCDLHAIKRDKLLEVLDFYSAFANSFARNLVLTYNLRHRLI 696
>sp|Q60603|KCNH1_MOUSE Potassium voltage-gated channel subfamily H member 1 OS=Mus
musculus GN=Kcnh1 PE=1 SV=1
Length = 989
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + QS ANVRALTYCDLH IKRD L +VL+FY AF++SF+RNL+L
Sbjct: 638 LGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 697
Query: 61 TYNLRHR 67
TYNLR R
Sbjct: 698 TYNLRKR 704
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKRD L +VL+FY AF++SF+RNL+LTYNLR R+V
Sbjct: 664 LTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIV 706
>sp|O18965|KCNH1_BOVIN Potassium voltage-gated channel subfamily H member 1 OS=Bos taurus
GN=KCNH1 PE=2 SV=2
Length = 987
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + QS ANVRALTYCDLH IKRD L +VL+FY AF++SF+RNL+L
Sbjct: 638 LGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 697
Query: 61 TYNLRHR 67
TYNLR R
Sbjct: 698 TYNLRKR 704
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKRD L +VL+FY AF++SF+RNL+LTYNLR R+V
Sbjct: 664 LTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIV 706
>sp|O95259|KCNH1_HUMAN Potassium voltage-gated channel subfamily H member 1 OS=Homo
sapiens GN=KCNH1 PE=1 SV=1
Length = 989
Score = 107 bits (267), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + QS ANVRALTYCDLH IKRD L +VL+FY AF++SF+RNL+L
Sbjct: 638 LGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 697
Query: 61 TYNLRHR 67
TYNLR R
Sbjct: 698 TYNLRKR 704
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKRD L +VL+FY AF++SF+RNL+LTYNLR R+V
Sbjct: 664 LTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIV 706
>sp|Q63472|KCNH1_RAT Potassium voltage-gated channel subfamily H member 1 OS=Rattus
norvegicus GN=Kcnh1 PE=1 SV=1
Length = 962
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + QS ANVRALTYCDLH IKRD L +VL+FY AF++SF+RNL+L
Sbjct: 611 LGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 670
Query: 61 TYNLRHR 67
TYNLR R
Sbjct: 671 TYNLRKR 677
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKRD L +VL+FY AF++SF+RNL+LTYNLR R+V
Sbjct: 637 LTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIV 679
>sp|Q9EPI9|KCNH5_RAT Potassium voltage-gated channel subfamily H member 5 OS=Rattus
norvegicus GN=Kcnh5 PE=2 SV=1
Length = 988
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + + ANVRALTYCDLH IKR+ LL+VLDFY AFANSF+RNL L
Sbjct: 607 LGKGDVFGDIFWKETTLAHACANVRALTYCDLHIIKREALLKVLDFYTAFANSFSRNLTL 666
Query: 61 TYNLRHR 67
T NLR R
Sbjct: 667 TCNLRKR 673
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKR+ LL+VLDFY AFANSF+RNL LT NLR R++
Sbjct: 633 LTYCDLHIIKREALLKVLDFYTAFANSFSRNLTLTCNLRKRII 675
>sp|Q920E3|KCNH5_MOUSE Potassium voltage-gated channel subfamily H member 5 OS=Mus
musculus GN=Kcnh5 PE=2 SV=3
Length = 988
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + + ANVRALTYCDLH IKR+ LL+VLDFY AFANSF+RNL L
Sbjct: 607 LGKGDVFGDIFWKETTLAHACANVRALTYCDLHIIKREALLKVLDFYTAFANSFSRNLTL 666
Query: 61 TYNLRHR 67
T NLR R
Sbjct: 667 TCNLRKR 673
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKR+ LL+VLDFY AFANSF+RNL LT NLR R++
Sbjct: 633 LTYCDLHIIKREALLKVLDFYTAFANSFSRNLTLTCNLRKRII 675
>sp|Q8NCM2|KCNH5_HUMAN Potassium voltage-gated channel subfamily H member 5 OS=Homo
sapiens GN=KCNH5 PE=1 SV=3
Length = 988
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ KGDVFGD FWK+ + + ANVRALTYCDLH IKR+ LL+VLDFY AFANSF+RNL L
Sbjct: 607 LGKGDVFGDIFWKETTLAHACANVRALTYCDLHIIKREALLKVLDFYTAFANSFSRNLTL 666
Query: 61 TYNLRHR 67
T NLR R
Sbjct: 667 TCNLRKR 673
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127
LTYCDLH IKR+ LL+VLDFY AFANSF+RNL LT NLR R++
Sbjct: 633 LTYCDLHIIKREALLKVLDFYTAFANSFSRNLTLTCNLRKRII 675
>sp|O54852|KCNH7_RAT Potassium voltage-gated channel subfamily H member 7 OS=Rattus
norvegicus GN=Kcnh7 PE=1 SV=1
Length = 1195
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S A+VRALTYCDLH I+R+ LLEVLD Y F++ F NL L
Sbjct: 802 LGKNDIFGEMVHLYAKPGKSNADVRALTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLEL 861
Query: 61 TYNLRHR--KRDSIN 73
T+NLRH K SIN
Sbjct: 862 TFNLRHESAKSQSIN 876
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 125
LTYCDLH I+R+ LLEVLD Y F++ F NL LT+NLRH
Sbjct: 828 LTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLELTFNLRHE 868
>sp|Q9ER47|KCNH7_MOUSE Potassium voltage-gated channel subfamily H member 7 OS=Mus
musculus GN=Kcnh7 PE=2 SV=2
Length = 1195
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S A+VRALTYCDLH I+R+ LLEVLD Y F++ F NL L
Sbjct: 802 LGKNDIFGEMVHLYAKPGKSNADVRALTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLEL 861
Query: 61 TYNLRHR--KRDSIN 73
T+NLRH K S+N
Sbjct: 862 TFNLRHESAKSQSVN 876
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 125
LTYCDLH I+R+ LLEVLD Y F++ F NL LT+NLRH
Sbjct: 828 LTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLELTFNLRHE 868
>sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily H member 7 OS=Homo
sapiens GN=KCNH7 PE=2 SV=2
Length = 1196
Score = 75.9 bits (185), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 46/66 (69%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S A+VRALTYCDLH I+R+ LLEVLD Y F++ F NL L
Sbjct: 802 LGKNDIFGEMVHLYAKPGKSNADVRALTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLEL 861
Query: 61 TYNLRH 66
T+NLRH
Sbjct: 862 TFNLRH 867
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRH 124
LTYCDLH I+R+ LLEVLD Y F++ F NL LT+NLRH
Sbjct: 828 LTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLELTFNLRH 867
>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H member 6 OS=Homo
sapiens GN=KCNH6 PE=1 SV=1
Length = 994
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S+A+VRALTYCDLH I+R LLEVLD Y AFA SF L +
Sbjct: 651 LGKNDIFGEPVSLHAQPGKSSADVRALTYCDLHKIQRADLLEVLDMYPAFAESFWSKLEV 710
Query: 61 TYNLR 65
T+NLR
Sbjct: 711 TFNLR 715
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/39 (66%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I+R LLEVLD Y AFA SF L +T+NLR
Sbjct: 677 LTYCDLHKIQRADLLEVLDMYPAFAESFWSKLEVTFNLR 715
>sp|O54853|KCNH6_RAT Potassium voltage-gated channel subfamily H member 6 OS=Rattus
norvegicus GN=Kcnh6 PE=1 SV=1
Length = 950
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S+A+VRALTYCDLH I R LLEVLD Y AFA++F L +
Sbjct: 651 LGKNDIFGEPASLHARPGKSSADVRALTYCDLHKIHRADLLEVLDMYPAFADTFWNKLEV 710
Query: 61 TYNLR 65
T+NLR
Sbjct: 711 TFNLR 715
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I R LLEVLD Y AFA++F L +T+NLR
Sbjct: 677 LTYCDLHKIHRADLLEVLDMYPAFADTFWNKLEVTFNLR 715
>sp|O08962|KCNH2_RAT Potassium voltage-gated channel subfamily H member 2 OS=Rattus
norvegicus GN=Kcnh2 PE=1 SV=1
Length = 1163
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S +VRALTYCDLH I RD LLEVLD Y F++ F +L +
Sbjct: 801 LGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEI 860
Query: 61 TYNLR 65
T+NLR
Sbjct: 861 TFNLR 865
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I RD LLEVLD Y F++ F +L +T+NLR
Sbjct: 827 LTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLR 865
>sp|Q8WNY2|KCNH2_RABIT Potassium voltage-gated channel subfamily H member 2 OS=Oryctolagus
cuniculus GN=KCNH2 PE=2 SV=3
Length = 1161
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S +VRALTYCDLH I RD LLEVLD Y F++ F +L +
Sbjct: 801 LGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEI 860
Query: 61 TYNLR 65
T+NLR
Sbjct: 861 TFNLR 865
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I RD LLEVLD Y F++ F +L +T+NLR
Sbjct: 827 LTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLR 865
>sp|O35219|KCNH2_MOUSE Potassium voltage-gated channel subfamily H member 2 OS=Mus
musculus GN=Kcnh2 PE=2 SV=2
Length = 1162
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S +VRALTYCDLH I RD LLEVLD Y F++ F +L +
Sbjct: 801 LGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEI 860
Query: 61 TYNLR 65
T+NLR
Sbjct: 861 TFNLR 865
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I RD LLEVLD Y F++ F +L +T+NLR
Sbjct: 827 LTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLR 865
>sp|Q12809|KCNH2_HUMAN Potassium voltage-gated channel subfamily H member 2 OS=Homo
sapiens GN=KCNH2 PE=1 SV=1
Length = 1159
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S +VRALTYCDLH I RD LLEVLD Y F++ F +L +
Sbjct: 799 LGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEI 858
Query: 61 TYNLR 65
T+NLR
Sbjct: 859 TFNLR 863
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I RD LLEVLD Y F++ F +L +T+NLR
Sbjct: 825 LTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLR 863
>sp|Q9TSZ3|KCNH2_CANFA Potassium voltage-gated channel subfamily H member 2 OS=Canis
familiaris GN=KCNH2 PE=2 SV=1
Length = 1158
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
+ K D+FG+ G+S +VRALTYCDLH I RD LLEVLD Y F++ F +L +
Sbjct: 798 LGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEI 857
Query: 61 TYNLR 65
T+NLR
Sbjct: 858 TFNLR 862
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 123
LTYCDLH I RD LLEVLD Y F++ F +L +T+NLR
Sbjct: 824 LTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLR 862
>sp|Q96L42|KCNH8_HUMAN Potassium voltage-gated channel subfamily H member 8 OS=Homo
sapiens GN=KCNH8 PE=2 SV=2
Length = 1107
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL- 59
+ KGD+ G + + V ++ A+V+ALTYCDL I L EVLD Y +A+ F ++
Sbjct: 608 LGKGDLIGANLSIKDQVIKTNADVKALTYCDLQCIILKGLFEVLDLYPEYAHKFVEDIQH 667
Query: 60 -LTYNLRHRKRDSINLFVSSIISRI 83
LTYNLR S +ISR+
Sbjct: 668 DLTYNLREGHE-------SDVISRL 685
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLR 123
LTYCDL I L EVLD Y +A+ F ++ LTYNLR
Sbjct: 634 LTYCDLQCIILKGLFEVLDLYPEYAHKFVEDIQHDLTYNLR 674
>sp|Q9QWS8|KCNH8_RAT Potassium voltage-gated channel subfamily H member 8 OS=Rattus
norvegicus GN=Kcnh8 PE=2 SV=2
Length = 1102
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL- 59
+ KGD+ G + + V ++ A+V+ALTYCDL I L EVL Y +A+ F ++
Sbjct: 608 LGKGDLIGANLSIKDQVIKTNADVKALTYCDLQCIILKGLFEVLGLYPEYAHKFVEDIQH 667
Query: 60 -LTYNLRHRKRDSINLFVSSIISRI 83
LTYNLR S +ISR+
Sbjct: 668 DLTYNLREGHE-------SDVISRL 685
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLR 123
LTYCDL I L EVL Y +A+ F ++ LTYNLR
Sbjct: 634 LTYCDLQCIILKGLFEVLGLYPEYAHKFVEDIQHDLTYNLR 674
>sp|P59111|KCNH8_MOUSE Potassium voltage-gated channel subfamily H member 8 OS=Mus
musculus GN=Kcnh8 PE=2 SV=2
Length = 1102
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL- 59
+ KGD+ G + + V ++ A+V+ALTYCDL I L EVL Y +A+ F ++
Sbjct: 608 LGKGDLIGANLSIKDQVIKTNADVKALTYCDLQCIILKGLFEVLGLYPEYAHKFVEDIQH 667
Query: 60 -LTYNLRHRKRDSINLFVSSIISRI 83
LTYNLR S +ISR+
Sbjct: 668 DLTYNLREGHE-------SDVISRL 685
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLR 123
LTYCDL I L EVL Y +A+ F ++ LTYNLR
Sbjct: 634 LTYCDLQCIILKGLFEVLGLYPEYAHKFVEDIQHDLTYNLR 674
>sp|O89047|KCNH3_RAT Potassium voltage-gated channel subfamily H member 3 OS=Rattus
norvegicus GN=Kcnh3 PE=2 SV=1
Length = 1087
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL- 59
+ KGD+ G + V ++ A+V+ LTYC L ++ L E L Y FA F+R L
Sbjct: 642 LGKGDLIGCELPQREQVVKANADVKGLTYCVLQCLQLAGLHESLALYPEFAPRFSRGLRG 701
Query: 60 -LTYNL 64
L+YNL
Sbjct: 702 ELSYNL 707
>sp|Q9WVJ0|KCNH3_MOUSE Potassium voltage-gated channel subfamily H member 3 OS=Mus
musculus GN=Kcnh3 PE=2 SV=2
Length = 1087
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL- 59
+ KGD+ G + V ++ A+V+ LTYC L ++ L E L Y FA F+R L
Sbjct: 642 LGKGDLIGCELPQREQVVKANADVKGLTYCVLQCLQLAGLHESLALYPEFAPRFSRGLRG 701
Query: 60 -LTYNL 64
L+YNL
Sbjct: 702 ELSYNL 707
>sp|Q9ULD8|KCNH3_HUMAN Potassium voltage-gated channel subfamily H member 3 OS=Homo
sapiens GN=KCNH3 PE=2 SV=2
Length = 1083
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL- 59
+ KGD+ G + V ++ A+V+ LTYC L ++ L + L Y FA F+R L
Sbjct: 639 LGKGDLIGCELPRREQVVKANADVKGLTYCVLQCLQLAGLHDSLALYPEFAPRFSRGLRG 698
Query: 60 -LTYNL 64
L+YNL
Sbjct: 699 ELSYNL 704
>sp|Q9UQ05|KCNH4_HUMAN Potassium voltage-gated channel subfamily H member 4 OS=Homo
sapiens GN=KCNH4 PE=2 SV=1
Length = 1017
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 15 NAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLRH 66
N V +++A+V+ALTYC L + L EVL Y + +F L LT+NLR
Sbjct: 637 NFVLKTSADVKALTYCGLQQLSSRGLAEVLRLYPEYGAAFRAGLPRDLTFNLRQ 690
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLRH 124
LTYC L + L EVL Y + +F L LT+NLR
Sbjct: 649 LTYCGLQQLSSRGLAEVLRLYPEYGAAFRAGLPRDLTFNLRQ 690
>sp|Q9R1T9|KCNH4_RAT Potassium voltage-gated channel subfamily H member 4 OS=Rattus
norvegicus GN=Kcnh4 PE=2 SV=1
Length = 1017
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 17 VGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLRH 66
V +++A+V+ALTYC L + L EVL Y + +F L LT+NLR
Sbjct: 638 VLKTSADVKALTYCGLQQLSSRGLAEVLRLYPEYVAAFRAGLPRDLTFNLRQ 689
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 85 LTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL--LTYNLRH 124
LTYC L + L EVL Y + +F L LT+NLR
Sbjct: 648 LTYCGLQQLSSRGLAEVLRLYPEYVAAFRAGLPRDLTFNLRQ 689
>sp|Q64MU6|GLAA_BACFR Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46)
GN=glaA PE=3 SV=1
Length = 605
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 34/156 (21%)
Query: 3 KGDVFGDSFW----KDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58
KG V DS + +D+ V N+RAL D T+K L F + F
Sbjct: 312 KGKVIIDSCYFAGAQDDPVNVHGTNLRALEKIDAQTLK-------LRFMHGQSYGFN--- 361
Query: 59 LLTYNLRHRKRDSINLFVSSIISRI-PLTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL 117
+ K D++ ++ + R T D+ I DR++EV F R++
Sbjct: 362 ------AYFKGDTVAFIRAATMERFASATVRDVRRIS-DRIVEV---------RFDRDIP 405
Query: 118 LTYNLRHRLVSNMTFITLTPKTRLKNSMYIILEERG 153
+ L H V NM T TP+ ++NS + RG
Sbjct: 406 TSLELNHDCVENM---TCTPEVEIRNSYFTRTSTRG 438
>sp|B8CWM4|PYRB_HALOH Aspartate carbamoyltransferase OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=pyrB PE=3 SV=1
Length = 313
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 87 YCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLVSNMTFITLTPKTRLKNSMY 146
+ L+ ++ D + E+LD QA F R + LR + + N+ F P TR K+S
Sbjct: 8 FLGLYNVEADEINEILDTAQAMKEIFTRTVKKVPTLRGKTIINLFF---EPSTRTKSSFD 64
Query: 147 I 147
I
Sbjct: 65 I 65
>sp|Q9TV66|HCN4_RABIT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Oryctolagus cuniculus
GN=HCN4 PE=2 SV=1
Length = 1175
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF------------ARNLLLTYNLR 65
G+ A+VRA TYC L+++ D EVL+ Y +F +N +L + ++
Sbjct: 668 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLHKVQ 727
Query: 66 HRKRDSI-NLFVSSIISRI 83
H + N ++I+ RI
Sbjct: 728 HDLSSGVSNYQENAIVQRI 746
>sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4 PE=1
SV=2
Length = 1186
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRH 66
G+ A+VRA TYC L+++ D EVL+ Y +N +L + ++H
Sbjct: 667 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRK---KNSILLHKVQH 712
>sp|Q9JKA9|HCN2_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2 OS=Rattus norvegicus GN=Hcn2
PE=2 SV=3
Length = 863
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
+S G FG+ G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 574 LSDGSYFGEICLLTR--GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 625
>sp|O88703|HCN2_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2 OS=Mus musculus GN=Hcn2 PE=1
SV=1
Length = 863
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
+S G FG+ G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 574 LSDGSYFGEICLLTR--GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 625
>sp|Q9UL51|HCN2_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2 OS=Homo sapiens GN=HCN2 PE=1
SV=3
Length = 889
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
+S G FG+ G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 601 LSDGSYFGEICLLTR--GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 652
>sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Rattus norvegicus GN=Hcn4
PE=2 SV=1
Length = 1198
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 667 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 703
>sp|Q9Y3Q4|HCN4_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Homo sapiens GN=HCN4 PE=1
SV=1
Length = 1203
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 667 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 703
>sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Mus musculus GN=Hcn1 PE=1
SV=1
Length = 910
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 536 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 572
>sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Rattus norvegicus GN=Hcn1
PE=2 SV=1
Length = 910
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 536 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 572
>sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Homo sapiens GN=HCN1 PE=2
SV=3
Length = 890
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 547 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 583
>sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Oryctolagus cuniculus
GN=HCN1 PE=2 SV=2
Length = 822
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54
G+ A+VRA TYC L+++ D EVL+ Y +F
Sbjct: 483 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 519
>sp|Q5L7M8|GLAA_BACFN Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=glaA PE=3 SV=1
Length = 605
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 34/156 (21%)
Query: 3 KGDVFGDSFW----KDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58
KG V DS + +D+ V N+RAL D T+K L F + F
Sbjct: 312 KGKVIIDSCYFAGAQDDPVNVHGTNLRALEKIDAQTLK-------LRFMHGQSYGFN--- 361
Query: 59 LLTYNLRHRKRDSINLFVSSIISRI-PLTYCDLHTIKRDRLLEVLDFYQAFANSFARNLL 117
+ K D++ ++ + R T D+ I DR++EV F R++
Sbjct: 362 ------AYFKGDTVAFVRAATMERFASATVRDVRRIS-DRIVEV---------RFDRDIP 405
Query: 118 LTYNLRHRLVSNMTFITLTPKTRLKNSMYIILEERG 153
+ L H V NM T TP+ ++N + RG
Sbjct: 406 TSLELNHDCVENM---TCTPEVEIRNCYFTRTSTRG 438
>sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mdm28 PE=2 SV=3
Length = 485
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 7 FGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFA-------NSFARNLL 59
F D F K GQS + + C K D L+ L Q A N+F + L
Sbjct: 250 FRDFFQKVRTSGQSPSREELIEVCKY--FKDDITLDNLSRAQLVAMCRYMNLNAFGTDPL 307
Query: 60 LTYNLRHR----KRDSINLFVSSIIS 81
L YN+RHR +RD +++ I S
Sbjct: 308 LRYNIRHRMRQIRRDDRAIYIEGINS 333
>sp|Q9P1Z3|HCN3_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 3 OS=Homo sapiens GN=HCN3 PE=2
SV=2
Length = 774
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRKRDSI 72
G+ A+VRA TYC L+++ D VL+ + +F + + LR K++SI
Sbjct: 500 GRRTASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAF-ETVAMDRLLRIGKKNSI 553
>sp|Q925I7|PDGFD_MOUSE Platelet-derived growth factor D OS=Mus musculus GN=Pdgfd PE=2
SV=1
Length = 370
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 10 SFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQA----------------FANS 53
S + D A+++AL +L +RD + D YQ F NS
Sbjct: 16 SCYPDTFATPQRASIKALRNANL---RRDESNHLTDLYQREENIQVTSNGHVQSPRFPNS 72
Query: 54 FARNLLLTYNLRHRKRDSINL 74
+ RNLLLT+ LR +++ I L
Sbjct: 73 YPRNLLLTWWLRSQEKTRIQL 93
>sp|Q64359|CNGA4_RAT Cyclic nucleotide-gated cation channel alpha-4 OS=Rattus norvegicus
GN=Cnga4 PE=2 SV=1
Length = 575
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 13 KDNAVG-QSAANVRALTYCDLHTIKRDRLLEVLDFY---QAFANSFARNLLLTYN 63
K N G + AN+++L Y DL + ++ L EVL Y QA R +LL N
Sbjct: 422 KGNMSGNRRTANIKSLGYSDLFCLSKEDLREVLSEYPQAQAVMEEKGREILLKMN 476
>sp|Q3UW12|CNGA4_MOUSE Cyclic nucleotide-gated cation channel alpha-4 OS=Mus musculus
GN=Cnga4 PE=2 SV=1
Length = 575
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 13 KDNAVG-QSAANVRALTYCDLHTIKRDRLLEVLDFY---QAFANSFARNLLLTYN 63
K N G + AN+++L Y DL + ++ L EVL Y QA R +LL N
Sbjct: 422 KGNMSGNRRTANIKSLGYSDLFCLSKEDLREVLSEYPQAQAVMEEKGREILLKMN 476
>sp|Q6V9H4|PDGFD_RABIT Platelet-derived growth factor D (Fragment) OS=Oryctolagus
cuniculus GN=PDGFD PE=2 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 49 AFANSFARNLLLTYNLRHRKRDSINL 74
AF NS+ RNLLLT+ L +++ I L
Sbjct: 12 AFPNSYPRNLLLTWRLHSQEKTRIQL 37
>sp|Q09873|WDR21_SCHPO WD repeat-containing protein 21 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wdr21 PE=1 SV=1
Length = 420
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLL 60
SKGDVF + DN V N L Y DL T K V FY + +NL
Sbjct: 251 QSKGDVFSLKYLGDNLVIAGCRNKSVLVY-DLRTKKEC----VQRFYHGSSICSMQNLDF 305
Query: 61 TYNLRHRKRDSINLFVSSIISRIPLTYCD-LHTIKRDRLLEVLDFYQAFANSFARNLLLT 119
+ L VS + S+I L C L + KR + + Y +N RNL L
Sbjct: 306 S---------QPKLLVSGLESKISLYDCRFLQSKKRPQSIMS---YMGHSNLLERNLALM 353
Query: 120 YNLRHRLVSN 129
N + S+
Sbjct: 354 KNENGSIFSS 363
>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha
OS=Gallus gallus PE=2 SV=1
Length = 645
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 1 MSKGDVFGD----SFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFY 47
+S G FG+ + A + AN+R++ Y DL + +D L+E L Y
Sbjct: 490 LSDGSYFGEISILNIKGSKAGNRRTANIRSIGYSDLFCLSKDDLMEALTEY 540
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,673,395
Number of Sequences: 539616
Number of extensions: 1690957
Number of successful extensions: 5048
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4965
Number of HSP's gapped (non-prelim): 96
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)