Query psy12115
Match_columns 154
No_of_seqs 174 out of 246
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 19:07:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0501|consensus 99.8 1.2E-19 2.6E-24 167.2 0.8 96 18-128 586-681 (971)
2 KOG0501|consensus 99.7 9.1E-19 2E-23 161.4 -0.7 67 1-67 612-678 (971)
3 KOG0498|consensus 99.0 5.1E-11 1.1E-15 112.4 1.8 69 1-69 487-557 (727)
4 TIGR03697 NtcA_cyano global ni 98.1 4.1E-06 8.8E-11 64.4 5.5 58 1-58 39-96 (193)
5 PF00027 cNMP_binding: Cyclic 98.0 2.2E-06 4.8E-11 57.3 1.4 47 1-49 45-91 (91)
6 KOG0500|consensus 98.0 5.5E-06 1.2E-10 75.9 4.0 57 1-57 373-433 (536)
7 PLN03192 Voltage-dependent pot 98.0 7.7E-06 1.7E-10 77.7 4.9 56 1-58 442-497 (823)
8 COG0664 Crp cAMP-binding prote 97.9 1E-05 2.3E-10 61.5 4.0 62 1-66 69-130 (214)
9 PRK11753 DNA-binding transcrip 97.9 2E-05 4.3E-10 61.5 5.3 57 1-58 66-122 (211)
10 cd00038 CAP_ED effector domain 97.9 1.4E-05 3.1E-10 54.2 3.6 53 1-55 63-115 (115)
11 KOG0499|consensus 97.8 9.8E-06 2.1E-10 76.1 2.6 57 1-57 594-651 (815)
12 PRK09392 ftrB transcriptional 97.8 3.3E-05 7.1E-10 61.8 4.5 56 1-58 75-130 (236)
13 PRK10402 DNA-binding transcrip 97.7 4.9E-05 1.1E-09 61.0 5.1 56 1-58 77-132 (226)
14 smart00100 cNMP Cyclic nucleot 97.6 0.00016 3.5E-09 49.0 5.0 57 1-57 63-119 (120)
15 KOG0498|consensus 97.2 0.00011 2.3E-09 70.2 1.1 49 78-126 506-556 (727)
16 PRK09391 fixK transcriptional 97.2 0.0007 1.5E-08 54.7 5.2 53 1-58 84-136 (230)
17 PRK11161 fumarate/nitrate redu 97.2 0.00088 1.9E-08 53.4 5.6 55 1-58 83-137 (235)
18 PRK13918 CRP/FNR family transc 96.2 0.005 1.1E-07 47.8 3.5 48 1-57 54-101 (202)
19 KOG0614|consensus 95.3 0.0026 5.6E-08 59.7 -1.8 43 1-45 218-260 (732)
20 KOG1113|consensus 94.8 0.0069 1.5E-07 53.9 -0.5 42 1-44 186-227 (368)
21 KOG0614|consensus 94.2 0.022 4.8E-07 53.7 1.6 49 1-51 342-391 (732)
22 PLN02868 acyl-CoA thioesterase 92.7 0.086 1.9E-06 46.6 2.7 48 1-52 76-123 (413)
23 KOG1113|consensus 92.0 0.068 1.5E-06 47.7 1.1 45 1-47 305-349 (368)
24 COG2905 Predicted signal-trans 91.4 0.27 6E-06 46.4 4.4 56 1-58 72-127 (610)
25 KOG2968|consensus 85.2 0.95 2.1E-05 45.2 3.7 55 1-57 438-496 (1158)
26 KOG2968|consensus 77.1 2.3 4.9E-05 42.6 3.2 56 1-58 554-609 (1158)
27 cd00038 CAP_ED effector domain 60.5 5.5 0.00012 26.3 1.4 36 78-113 80-115 (115)
28 KOG0500|consensus 56.2 5.9 0.00013 37.1 1.3 37 77-113 395-431 (536)
29 PF00027 cNMP_binding: Cyclic 53.6 7.1 0.00015 25.3 1.0 30 78-107 62-91 (91)
30 PF04831 Popeye: Popeye protei 47.5 39 0.00084 27.0 4.5 44 21-64 93-138 (153)
31 PRK11753 DNA-binding transcrip 44.5 16 0.00034 28.2 1.9 38 79-116 85-122 (211)
32 PRK11832 putative DNA-binding 40.7 49 0.0011 27.5 4.3 28 21-48 83-110 (207)
33 COG2033 Desulfoferrodoxin [Ene 40.4 19 0.0004 28.0 1.7 16 20-35 103-118 (126)
34 PRK09392 ftrB transcriptional 38.3 23 0.0005 28.0 2.0 39 78-116 92-130 (236)
35 PLN03192 Voltage-dependent pot 37.3 23 0.0005 34.1 2.1 39 78-116 459-497 (823)
36 PF12056 DUF3537: Protein of u 36.9 15 0.00032 33.5 0.7 40 29-68 184-223 (398)
37 TIGR03697 NtcA_cyano global ni 36.7 24 0.00053 26.6 1.8 37 80-116 60-96 (193)
38 PF08557 Lipid_DES: Sphingolip 29.5 43 0.00094 20.9 1.7 15 41-55 20-34 (39)
39 KOG0158|consensus 28.8 23 0.0005 32.9 0.6 51 43-110 320-372 (499)
40 PF01951 Archease: Archease pr 27.8 25 0.00054 26.7 0.5 33 5-39 95-127 (137)
41 cd03172 SORL_classII Superoxid 27.6 36 0.00079 24.9 1.4 16 21-36 85-100 (104)
42 PF07624 PSD2: Protein of unkn 26.5 80 0.0017 21.6 2.9 30 37-67 9-39 (76)
43 PRK10402 DNA-binding transcrip 25.7 54 0.0012 26.0 2.1 39 78-116 94-132 (226)
44 PF08158 NUC130_3NT: NUC130/3N 24.9 26 0.00056 23.0 0.1 30 99-128 3-41 (52)
45 PRK09391 fixK transcriptional 24.7 51 0.0011 26.3 1.9 38 79-116 99-136 (230)
46 cd00524 SORL Superoxide reduct 23.9 48 0.001 23.1 1.4 14 22-35 71-84 (86)
47 PF08984 DUF1858: Domain of un 22.7 56 0.0012 21.1 1.5 19 39-57 6-24 (59)
No 1
>KOG0501|consensus
Probab=99.75 E-value=1.2e-19 Score=167.15 Aligned_cols=96 Identities=48% Similarity=0.737 Sum_probs=85.2
Q ss_pred cccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccccccCccccccccccccceeeecceeecCcc
Q psy12115 18 GQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRKRDSINLFVSSIISRIPLTYCDLHTIKRDR 97 (154)
Q Consensus 18 g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~~~~~~~~~~~Ss~s~~~~tyCDlh~i~~~~ 97 (154)
|+|-.++.-..-..|.+||.|++..+|++...|...||+.-.+. .|+++++||||||||.|+|+.
T Consensus 586 GESvDaLcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~~t~~---------------qs~ANVRALTYcDLH~IKrd~ 650 (971)
T KOG0501|consen 586 GESVDALCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKENTLG---------------QSAANVRALTYCDLHMIKRDK 650 (971)
T ss_pred CCccceEEEEEecceEEeecCcEEEEeecCccchhHHhhhhhhh---------------hhhhhhhhhhhhhhhHHhHHH
Confidence 45555555566679999999999999999999999999983332 279999999999999999999
Q ss_pred hHHHhhhhHHHHHHhhhccccccchhhhhhc
Q psy12115 98 LLEVLDFYQAFANSFARNLLLTYNLRHRLVS 128 (154)
Q Consensus 98 L~~vl~~ypef~~~f~~~l~lt~nlr~~~~~ 128 (154)
|++|||||..||++|.|||.||||||++++.
T Consensus 651 Ll~VLdFYtAFanSFaRNl~LTyNLr~RiiF 681 (971)
T KOG0501|consen 651 LLKVLDFYTAFANSFARNLTLTYNLRHRIIF 681 (971)
T ss_pred HHHHHHHHHHHHHHhhhceeeEeeccceeee
Confidence 9999999999999999999999999999984
No 2
>KOG0501|consensus
Probab=99.71 E-value=9.1e-19 Score=161.43 Aligned_cols=67 Identities=84% Similarity=1.365 Sum_probs=65.8
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 67 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~ 67 (154)
|||||+||+.+|.+.+.|+++|.||||||||||.|.+|.|.+||+.|..|+.+|.+||.||||||.+
T Consensus 612 LGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~LTyNLr~R 678 (971)
T KOG0501|consen 612 LGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTLTYNLRHR 678 (971)
T ss_pred eecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceeeEeeccce
Confidence 7999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0498|consensus
Probab=99.05 E-value=5.1e-11 Score=112.44 Aligned_cols=69 Identities=28% Similarity=0.439 Sum_probs=61.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh--hhhhhhcccccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN--LLLTYNLRHRKR 69 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~--L~Lt~nLR~~~~ 69 (154)
||+||+|||..+.-..+++++++|||+|||+++.|++++|.+|+++||+++.+|.++ ..++++.|....
T Consensus 487 L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa 557 (727)
T KOG0498|consen 487 LGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAA 557 (727)
T ss_pred ecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhh
Confidence 799999996666655447789999999999999999999999999999999999997 479999998763
No 4
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.15 E-value=4.1e-06 Score=64.41 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+...+.+.+..+..++.|++.|.+..|++++|.+.+..+|+|+..+.+.+
T Consensus 39 ~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~~~l 96 (193)
T TIGR03697 39 LRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEKAIEEDPDLSMLLLQGL 96 (193)
T ss_pred ccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHHHHHHChHHHHHHHHHH
Confidence 4789999999888764444567899999999999999999999999999999998874
No 5
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=98.01 E-value=2.2e-06 Score=57.26 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=43.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQA 49 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPe 49 (154)
+++||+||+...+.+. ++.++|+|++.|.+..|++++|.++++.+|+
T Consensus 45 ~~~g~~~g~~~~~~~~--~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 45 LGPGDIFGEIELLTGK--PSPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EETTEEESGHHHHHTS--BBSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred eeeeccccceeecCCC--ccEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 4689999999998874 6899999999999999999999999999996
No 6
>KOG0500|consensus
Probab=97.99 E-value=5.5e-06 Score=75.90 Aligned_cols=57 Identities=28% Similarity=0.472 Sum_probs=48.5
Q ss_pred CCCCCcccccCCCC--C--CCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKD--N--AVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~--~--~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
|+.|++|||...+. + .-.+|+|+||+.-|.||+++++||+-++|+.||+=+..+.++
T Consensus 373 L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 373 LKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred ecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 57899999987653 2 124799999999999999999999999999999988877733
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.98 E-value=7.7e-06 Score=77.66 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=51.8
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
|++||+|||...+.+ .++.++|+|.+.|++..|++++|.++++.+|+.+..+.+++
T Consensus 442 l~~Gd~FGE~~~l~~--~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~ 497 (823)
T PLN03192 442 LGCGDIFGEVGALCC--RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNF 497 (823)
T ss_pred ccCCCEecchHHhcC--CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHH
Confidence 579999999999887 45899999999999999999999999999999999988885
No 8
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=97.93 E-value=1e-05 Score=61.54 Aligned_cols=62 Identities=29% Similarity=0.372 Sum_probs=53.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRH 66 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~ 66 (154)
+++||+||+.+++.+. +++++++|+|-|.+..|.++.|.+.+..+|.++..+... ++.+++.
T Consensus 69 ~~~g~~fg~~~l~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~--~~~~l~~ 130 (214)
T COG0664 69 LGPGDFFGELALLGGD--PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRL--LARRLRQ 130 (214)
T ss_pred ecCCchhhhHHHhcCC--CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHH--HHHHHHH
Confidence 4799999999999874 689999999999999999999999887799999998877 4444443
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=97.91 E-value=2e-05 Score=61.53 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=49.9
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+...+.+. ..+.++|+|+|.|.+..|++++|.+.+..+|++...|.+.+
T Consensus 66 ~~~g~~~g~~~~~~~~-~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 122 (211)
T PRK11753 66 LNQGDFIGELGLFEEG-QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM 122 (211)
T ss_pred cCCCCEEeehhhccCC-CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 4789999999887652 24678999999999999999999999999999999888773
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=97.88 E-value=1.4e-05 Score=54.19 Aligned_cols=53 Identities=32% Similarity=0.510 Sum_probs=46.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFA 55 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~ 55 (154)
+++|++||+.....+ .++..+++|.+.|.+..|+.+.|.++++.+|++...|+
T Consensus 63 ~~~g~~~g~~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 115 (115)
T cd00038 63 LGPGDLFGELALLGN--GPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115 (115)
T ss_pred cCCccCcChHHHhcC--CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhcC
Confidence 368999999888754 45788999999999999999999999999999988763
No 11
>KOG0499|consensus
Probab=97.82 E-value=9.8e-06 Score=76.07 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=49.5
Q ss_pred CCCCCcccccCCCCCCCc-ccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVG-QSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g-~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
|..|.+|||+.++.-.-| +|+|+|+|.-||.|.++++.+|.+||.-||+-+.-+.+.
T Consensus 594 L~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkk 651 (815)
T KOG0499|consen 594 LKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKK 651 (815)
T ss_pred ecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHH
Confidence 568999999999865333 799999999999999999999999999999877766555
No 12
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=97.77 E-value=3.3e-05 Score=61.82 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=50.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .++.++|.|++.|.+..|+++.|.+.+..+|+|+..+.+.+
T Consensus 75 ~~~g~~~g~~~~~~~--~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l 130 (236)
T PRK09392 75 LRPVSTFILAAVVLD--APYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFEL 130 (236)
T ss_pred eCCCchhhhHHHhCC--CCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 478999999988876 44888999999999999999999999999999999988774
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=97.74 E-value=4.9e-05 Score=61.03 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=50.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+...+.+ .++.+++.|+|.|.+..|+++.|.+.+..+|.|+..+.+.+
T Consensus 77 ~~~g~~~G~~~~~~~--~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l 132 (226)
T PRK10402 77 FAAPCFIGEIELIDK--DHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFL 132 (226)
T ss_pred cCCCCeEEeehhhcC--CCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHH
Confidence 468999999987776 45789999999999999999999999999999999887774
No 14
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=97.56 E-value=0.00016 Score=49.01 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
+++||+||+.........+...++.|.+.|.+..|..+.+.+.+..+|.+...+.+.
T Consensus 63 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (120)
T smart00100 63 LGPGDFFGELALLTNSRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLELLLE 119 (120)
T ss_pred ecCCceechhhhccCCCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHhc
Confidence 478999999988833334578899999999999999999999999999888877654
No 15
>KOG0498|consensus
Probab=97.23 E-value=0.00011 Score=70.21 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=45.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhc--cccccchhhhh
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARN--LLLTYNLRHRL 126 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~--l~lt~nlr~~~ 126 (154)
++.+|+|+|||+++.|++++|.+|++.||+++..|.++ ..+++|.|...
T Consensus 506 ~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~a 556 (727)
T KOG0498|consen 506 QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWA 556 (727)
T ss_pred CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhh
Confidence 57789999999999999999999999999999999998 58888888655
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=97.18 E-value=0.0007 Score=54.68 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+.. + .....++.|++.|.+..|+.+.|.+++..+|+|...|.+.+
T Consensus 84 ~~~Gd~fG~~~---~--~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l 136 (230)
T PRK09391 84 HLPGDVFGLES---G--STHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLT 136 (230)
T ss_pred ecCCceecccC---C--CcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHH
Confidence 46899999742 2 23578999999999999999999999999999999999884
No 17
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=97.16 E-value=0.00088 Score=53.42 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=46.9
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+...... ....++.|++.|.+..|+++.|.+.+..+|+|+..+.+.+
T Consensus 83 ~~~gd~~g~~~~~~~---~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~ 137 (235)
T PRK11161 83 HLAGDLVGFDAIGSG---QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLM 137 (235)
T ss_pred ccCCceeccccccCC---CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHH
Confidence 368999999766443 2345899999999999999999999999999999988874
No 18
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=96.21 E-value=0.005 Score=47.75 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=37.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
+++||+||+.++. + .+++.++.|++.|.+..|+++.| +|++...|...
T Consensus 54 ~~~Gd~~G~~~~~-~--~~~~~~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~ 101 (202)
T PRK13918 54 VRPGEYFGEEALA-G--AERAYFAEAVTDSRIDVLNPALM------SAEDNLVLTQH 101 (202)
T ss_pred ecCCCeechHHhc-C--CCCCceEEEcCceEEEEEEHHHc------ChhhHHHHHHH
Confidence 4789999997654 3 34678899999999999999887 45555555555
No 19
>KOG0614|consensus
Probab=95.27 E-value=0.0026 Score=59.71 Aligned_cols=43 Identities=35% Similarity=0.434 Sum_probs=39.1
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLD 45 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~ 45 (154)
+|+|-+|||.+.+++ ..|+|||+|+|-|.+-.|.|..|..++.
T Consensus 218 m~~gtvFGELAILyn--ctRtAsV~alt~~~lWaidR~vFq~IM~ 260 (732)
T KOG0614|consen 218 MGAGTVFGELAILYN--CTRTASVRALTDVRLWAIDREVFQAIMM 260 (732)
T ss_pred cCCchhhhHHHHHhC--CcchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 578999999999999 5599999999999999999999988764
No 20
>KOG1113|consensus
Probab=94.76 E-value=0.0069 Score=53.91 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVL 44 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL 44 (154)
+++|..|||.+++.++| |+|+|.|.|-|-+.-|++..|..++
T Consensus 186 ~~~g~sFGElALmyn~P--RaATv~a~t~~klWgldr~SFrrIi 227 (368)
T KOG1113|consen 186 YSPGGSFGELALMYNPP--RAATVVAKSLKKLWGLDRTSFRRII 227 (368)
T ss_pred eCCCCchhhhHhhhCCC--cccceeeccccceEEEeeceeEEEe
Confidence 47899999999999955 9999999999999999998885543
No 21
>KOG0614|consensus
Probab=94.25 E-value=0.022 Score=53.66 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=42.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeee-eceEEeehhhHHHHHhhcHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTY-CDLHTIKRDRLLEVLDFYQAFA 51 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTY-CdL~~I~rddl~eVL~~yPefa 51 (154)
|++||+|||-+++...+ |+|+|.|... ....+|+++.|...++---+..
T Consensus 342 l~kGd~FGE~al~~edv--RtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 342 LNKGDYFGERALLGEDV--RTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred ccccchhhHHHhhccCc--cchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 68999999999998844 9999999998 7889999999988777665555
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=92.74 E-value=0.086 Score=46.56 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=39.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFAN 52 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~ 52 (154)
+++||+||+. +.+ ..+.++|+|++-|.+..|.++.|.-...+++-+.+
T Consensus 76 l~~Gd~fG~~--l~~--~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~ 123 (413)
T PLN02868 76 LKRYDYFGYG--LSG--SVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSD 123 (413)
T ss_pred eCCCCEeehh--hCC--CCcccEEEECCCEEEEEEcHHHHhhhccccccccc
Confidence 5789999985 444 45899999999999999999999887777764443
No 23
>KOG1113|consensus
Probab=91.98 E-value=0.068 Score=47.73 Aligned_cols=45 Identities=27% Similarity=0.287 Sum_probs=40.1
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFY 47 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~y 47 (154)
|++||+|||.+++.+.+ |.|+|-|-+---+..+.++.|..+|+-=
T Consensus 305 l~~~dyfge~al~~~~p--r~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 305 LKKGDYFGELALLKNLP--RAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred echhhhcchHHHHhhch--hhceeeccCCceeeeeChHHHHHHhhHH
Confidence 57899999999999955 8999999999999999999999998743
No 24
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=91.35 E-value=0.27 Score=46.41 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=45.1
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+..||.||-..+.+... .+..+-|.+-.=++.|.++.|.+..+.+|+|+.-|..++
T Consensus 72 ~~~gdlFg~~~l~~~~~--~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~ 127 (610)
T COG2905 72 LAAGDLFGFSSLFTELN--KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSL 127 (610)
T ss_pred eccCccccchhhcccCC--CcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHH
Confidence 45799999998888733 233455666666788999999999999999999999884
No 25
>KOG2968|consensus
Probab=85.20 E-value=0.95 Score=45.18 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcH----HHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQ----AFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yP----efa~~f~~~ 57 (154)
.|+|+++|-.+.+.+. ++.-+++|..-|....|++++|.+++..+| .++.+..+-
T Consensus 438 v~pG~ivgyla~lt~e--~S~~tirArsdt~v~~isrs~l~~~~~~~p~I~L~ia~svl~~ 496 (1158)
T KOG2968|consen 438 VGPGEIVGYLAILTNE--PSFITIRARSDTRVLFISRSDLERFLDAEPLIYLRIAHSVLRR 496 (1158)
T ss_pred ecCCceechhhhhcCC--cceEEEEEecceEEEEeeHHHHHHHHHhCceEEEehhhHHHHh
Confidence 3789999999999984 488899999999999999999999999999 777765555
No 26
>KOG2968|consensus
Probab=77.11 E-value=2.3 Score=42.64 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=50.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
.|+||++|+.-.+... .|+.+|.|.-..+|..|...-|.-+...||.+-.++.+-|
T Consensus 554 ygrGd~iG~~E~lt~~--~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll 609 (1158)
T KOG2968|consen 554 YGRGDLIGEVEMLTKQ--PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLL 609 (1158)
T ss_pred ccCcceeehhHHhhcC--CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHH
Confidence 4889999998888773 4899999999999999999999999999999999887775
No 27
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=60.52 E-value=5.5 Score=26.32 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhh
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFA 113 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~ 113 (154)
+..+..|.+.|.+..|+++.+.++++-.|++...|+
T Consensus 80 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 115 (115)
T cd00038 80 RSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115 (115)
T ss_pred CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhcC
Confidence 355677889999999999999999999999888763
No 28
>KOG0500|consensus
Probab=56.25 E-value=5.9 Score=37.15 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=32.8
Q ss_pred cccccccceeeecceeecCcchHHHhhhhHHHHHHhh
Q psy12115 77 SSIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFA 113 (154)
Q Consensus 77 ~Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~ 113 (154)
...++++..-|.||++.+++|+.++|.=||+=.....
T Consensus 395 RRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 395 RRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred cceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 3577899999999999999999999999999777655
No 29
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=53.57 E-value=7.1 Score=25.28 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.6
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHH
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQA 107 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ype 107 (154)
+..+..|++.|.+-.|+++.+.++++-+|+
T Consensus 62 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 62 SPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp BSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred cEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 456788899999999999999999998886
No 30
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=47.50 E-value=39 Score=27.02 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=37.7
Q ss_pred ceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh--hhhhhc
Q psy12115 21 AANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL--LLTYNL 64 (154)
Q Consensus 21 sAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L--~Lt~nL 64 (154)
-.++.|.+.|...+=+|+.|.-+|...|-.+.-|..-+ |++--|
T Consensus 93 QVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KL 138 (153)
T PF04831_consen 93 QVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKL 138 (153)
T ss_pred EEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999888775 555433
No 31
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=44.49 E-value=16 Score=28.18 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=33.2
Q ss_pred cccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 79 IISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 79 s~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
..+..|.+.|.+-.|+.+.+.+.+.-+|++...|.+.+
T Consensus 85 ~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 122 (211)
T PRK11753 85 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM 122 (211)
T ss_pred eEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 45678899999999999999999999999998877665
No 32
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=40.68 E-value=49 Score=27.47 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=25.0
Q ss_pred ceeEeEeeeeceEEeehhhHHHHHhhcH
Q psy12115 21 AANVRALTYCDLHTIKRDRLLEVLDFYQ 48 (154)
Q Consensus 21 sAsVrALTYCdL~~I~rddl~eVL~~yP 48 (154)
...++|.|.|.++.|++++|.+++++..
T Consensus 83 ~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 83 PYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred eEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 4579999999999999999999998654
No 33
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=40.44 E-value=19 Score=27.97 Aligned_cols=16 Identities=38% Similarity=1.018 Sum_probs=13.8
Q ss_pred cceeEeEeeeeceEEe
Q psy12115 20 SAANVRALTYCDLHTI 35 (154)
Q Consensus 20 rsAsVrALTYCdL~~I 35 (154)
++..++|+.||.+|-+
T Consensus 103 ~~~~l~A~~yCNiHGL 118 (126)
T COG2033 103 KSGKLRALSYCNIHGL 118 (126)
T ss_pred cCccEEeEeecceeee
Confidence 4678999999999976
No 34
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=38.25 E-value=23 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=34.1
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|.+.|.+..|+.+.+.+.+.-+|+|+..|.+.+
T Consensus 92 ~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l 130 (236)
T PRK09392 92 YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFEL 130 (236)
T ss_pred CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 455678999999999999999999999999999887664
No 35
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=37.29 E-value=23 Score=34.15 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.9
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...+.++.+.|++-.|+++++.+++.-+|+.+....+++
T Consensus 459 ~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~ 497 (823)
T PLN03192 459 QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNF 497 (823)
T ss_pred CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHH
Confidence 356788999999999999999999999999998887775
No 36
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=36.90 E-value=15 Score=33.50 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=37.1
Q ss_pred eeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhccccc
Q psy12115 29 YCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRK 68 (154)
Q Consensus 29 YCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~~ 68 (154)
-|.|++|.-+++.++++.-.|...-+.+++.|..+|+.-+
T Consensus 184 iC~LQiLr~~~~~klfe~~sdv~~il~EH~RiR~qL~~IS 223 (398)
T PF12056_consen 184 ICNLQILRFEGYAKLFERDSDVGVILEEHLRIRRQLSKIS 223 (398)
T ss_pred HHHHhheehHhHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999999999999999999998654
No 37
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=36.73 E-value=24 Score=26.63 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=32.9
Q ss_pred ccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 80 ISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 80 ~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
.+..|++.|.+-.|+++.+.+.+.-+|+|+..|.+.+
T Consensus 60 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~~~l 96 (193)
T TIGR03697 60 YHAVAFTRVELLAVPIEQVEKAIEEDPDLSMLLLQGL 96 (193)
T ss_pred eEEEEecceEEEEeeHHHHHHHHHHChHHHHHHHHHH
Confidence 4567899999999999999999999999999987765
No 38
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=29.53 E-value=43 Score=20.94 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=12.5
Q ss_pred HHHHhhcHHHHHHHh
Q psy12115 41 LEVLDFYQAFANSFA 55 (154)
Q Consensus 41 ~eVL~~yPefa~~f~ 55 (154)
.++|++|||+..-|-
T Consensus 20 k~IL~k~PeIk~L~G 34 (39)
T PF08557_consen 20 KEILKKHPEIKKLMG 34 (39)
T ss_pred HHHHHhChHHHHHhC
Confidence 789999999987554
No 39
>KOG0158|consensus
Probab=28.75 E-value=23 Score=32.95 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHhhcHHHHHHHhhhhhhhhhcccccccCccccccccccccceeeecceeecC--cchHHHhhhhHHHHH
Q psy12115 43 VLDFYQAFANSFARNLLLTYNLRHRKRDSINLFVSSIISRIPLTYCDLHTIKR--DRLLEVLDFYQAFAN 110 (154)
Q Consensus 43 VL~~yPefa~~f~~~L~Lt~nLR~~~~~~~~~~~~Ss~s~~~~tyCDlh~i~~--~~L~~vl~~ypef~~ 110 (154)
-|..||++++++.++++-+. .+...+||..++..+= .=+.|+|++||.-..
T Consensus 320 eLA~~PdvQ~kLreEI~~~~-----------------~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~ 372 (499)
T KOG0158|consen 320 ELAKNPDVQDKLREEIDEVL-----------------EEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPF 372 (499)
T ss_pred HHhcChHHHHHHHHHHHHHh-----------------cccCCCCHHHHhCCcHHHHHHHHHHhhCCCccc
Confidence 37789999998888853221 1111267777775541 122599999998665
No 40
>PF01951 Archease: Archease protein family (MTH1598/TM1083); InterPro: IPR023572 The archease superfamily of proteins are represented in all three domains of life. Archease genes are generally located adjacent to genes encoding proteins involved in DNA or RNA processing and therefore been predicted to be modulators or chaperones involved in DNA or RNA metabolism. Many of the roles of archeases remain to be established experimentally. The function of one of the archeases from the hyperthermophile Pyrococcus abyssi has been determined. The gene encoding the archease (PAB1946) is located in a bicistronic operon immediately upstream from a second open reading frame (PAB1947), which encodes a tRNA m5C methyltransferase. The methyl transferase catalyses m5C formation at several cytosine's within tRNAs with preference for C49; the specificity of the methyltransferase reaction being increased by the archease. The archease exists in monomeric and oligomeric states, with only the oligomeric forms able to bind the methyltransferase. Binding prevents aggregation and hinders dimerisation of the methyltransferase-tRNA complex []. The function of this family of archeases as chaperones is supported by structural analysis of O27635 from SWISSPROT from Methanobacterium thermoautotrophicum, which shows homology to heat shock protein 33, which is a chaperone protein that inhibits the aggregation of partially denatured proteins []. Structurally, the archeases are composed of a single three layer beta-alpha-beta sandwich domain similar to those found in other chaperones.; PDB: 1J5U_A 1JW3_A.
Probab=27.83 E-value=25 Score=26.73 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=15.4
Q ss_pred CcccccCCCCCCCcccceeEeEeeeeceEEeehhh
Q psy12115 5 DVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDR 39 (154)
Q Consensus 5 D~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rdd 39 (154)
-..||....... ..-..|||.||..|.+.+.++
T Consensus 95 ~~~ge~~~~~~h--~~~~eVKAvTyh~l~i~~~~~ 127 (137)
T PF01951_consen 95 RLRGEPFDPEKH--EFGTEVKAVTYHGLEIEQEDG 127 (137)
T ss_dssp CEEEEEEEECCE----S----EE-STT-EEEEETT
T ss_pred EEEEEECCcccc--cCCCcEEEccccCcEEEEcCC
Confidence 345554443321 123589999999999888554
No 41
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=27.56 E-value=36 Score=24.89 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=12.6
Q ss_pred ceeEeEeeeeceEEee
Q psy12115 21 AANVRALTYCDLHTIK 36 (154)
Q Consensus 21 sAsVrALTYCdL~~I~ 36 (154)
...+.|+.||.+|=|=
T Consensus 85 ~~~l~a~~yCNlHGLW 100 (104)
T cd03172 85 KGKLVALSYCNIHGLW 100 (104)
T ss_pred cceEEEEEEcccceeE
Confidence 3469999999998653
No 42
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=26.51 E-value=80 Score=21.58 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=24.6
Q ss_pred hhhHHHHHhhc-HHHHHHHhhhhhhhhhcccc
Q psy12115 37 RDRLLEVLDFY-QAFANSFARNLLLTYNLRHR 67 (154)
Q Consensus 37 rddl~eVL~~y-Pefa~~f~~~L~Lt~nLR~~ 67 (154)
-.+|.+.|... ++|+..|.+.| ++|-+...
T Consensus 9 ~~eLk~~L~~~~~~~~~~~~~kl-~~YAlGR~ 39 (76)
T PF07624_consen 9 AAELKQYLAERKDQFARCFAEKL-LTYALGRP 39 (76)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHH-HHHHcCCC
Confidence 35788999999 99999999998 88866443
No 43
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=25.65 E-value=54 Score=26.03 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=33.2
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+.+.+.+.+.-.|.|...+.+.+
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l 132 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFL 132 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHH
Confidence 456788999999999999999999998999988766554
No 44
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=24.87 E-value=26 Score=22.97 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=23.3
Q ss_pred HHHhhhhHHHHHHhhhcc---------ccccchhhhhhc
Q psy12115 99 LEVLDFYQAFANSFARNL---------LLTYNLRHRLVS 128 (154)
Q Consensus 99 ~~vl~~ypef~~~f~~~l---------~lt~nlr~~~~~ 128 (154)
..|-..||+-...|...| .|...||..+..
T Consensus 3 a~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~ 41 (52)
T PF08158_consen 3 AHVAHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVK 41 (52)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 356778999999999887 467888877664
No 45
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=24.73 E-value=51 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.6
Q ss_pred cccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 79 IISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 79 s~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
..+..|++.|.+-.|+.+.+.+.+.-.|+|+..|.+.+
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l 136 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLT 136 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHH
Confidence 45678899999999999999999999999999888765
No 46
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=23.92 E-value=48 Score=23.08 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=11.8
Q ss_pred eeEeEeeeeceEEe
Q psy12115 22 ANVRALTYCDLHTI 35 (154)
Q Consensus 22 AsVrALTYCdL~~I 35 (154)
..++|..||.+|=|
T Consensus 71 g~l~a~~yCN~HGl 84 (86)
T cd00524 71 GKLVALSYCNLHGL 84 (86)
T ss_pred ceEEEEEEccccee
Confidence 47999999999854
No 47
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=22.73 E-value=56 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.6
Q ss_pred hHHHHHhhcHHHHHHHhhh
Q psy12115 39 RLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 39 dl~eVL~~yPefa~~f~~~ 57 (154)
.+.++++.||+..+-|.+.
T Consensus 6 ~I~el~~~yP~~~~il~~~ 24 (59)
T PF08984_consen 6 TIYELLEQYPELIEILVSY 24 (59)
T ss_dssp BHHHHHHH-GGGHHHHHHT
T ss_pred CHHHHHHHCHHHHHHHHHc
Confidence 4789999999999988865
Done!