Query psy12115
Match_columns 154
No_of_seqs 174 out of 246
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:08:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 99.2 1.9E-11 6.6E-16 93.8 5.5 69 1-69 139-209 (212)
2 4f8a_A Potassium voltage-gated 99.1 5E-11 1.7E-15 86.2 4.8 67 1-67 91-157 (160)
3 3mdp_A Cyclic nucleotide-bindi 98.9 2E-09 6.7E-14 76.1 6.0 56 1-58 78-133 (142)
4 2ptm_A Hyperpolarization-activ 98.9 8.6E-10 2.9E-14 83.7 3.4 61 1-65 136-196 (198)
5 3bpz_A Potassium/sodium hyperp 98.8 8.1E-10 2.8E-14 84.3 1.5 63 1-67 136-198 (202)
6 2z69_A DNR protein; beta barre 98.7 2.2E-08 7.6E-13 71.5 5.1 64 1-68 81-145 (154)
7 1vp6_A CNBD, cyclic-nucleotide 98.7 1E-08 3.5E-13 72.5 3.0 62 1-66 73-134 (138)
8 2pqq_A Putative transcriptiona 98.6 3.2E-08 1.1E-12 70.1 4.8 63 1-67 74-136 (149)
9 3gyd_A CNMP-BD protein, cyclic 98.6 1.3E-08 4.4E-13 77.2 2.5 67 1-69 108-176 (187)
10 1o5l_A Transcriptional regulat 98.5 3.8E-08 1.3E-12 75.4 3.1 57 1-58 68-124 (213)
11 3idb_B CAMP-dependent protein 98.5 2.2E-08 7.5E-13 73.2 1.2 55 1-57 106-160 (161)
12 3shr_A CGMP-dependent protein 98.5 2.6E-08 8.9E-13 79.6 1.5 63 1-67 227-289 (299)
13 3shr_A CGMP-dependent protein 98.5 4.3E-08 1.5E-12 78.3 2.4 114 1-116 103-282 (299)
14 2oz6_A Virulence factor regula 98.4 1.8E-07 6.2E-12 70.2 4.8 58 1-58 59-118 (207)
15 3ocp_A PRKG1 protein; serine/t 98.4 5.2E-08 1.8E-12 69.4 1.5 52 1-54 87-138 (139)
16 1zyb_A Transcription regulator 98.4 9.2E-08 3.1E-12 74.1 2.9 112 1-116 89-210 (232)
17 3e97_A Transcriptional regulat 98.4 2.2E-07 7.4E-12 71.3 4.7 56 1-58 75-130 (231)
18 2qcs_B CAMP-dependent protein 98.4 1.5E-07 5E-12 74.6 3.7 56 1-58 227-282 (291)
19 4ev0_A Transcription regulator 98.4 1.3E-07 4.4E-12 71.4 2.9 56 1-58 68-123 (216)
20 3ryp_A Catabolite gene activat 98.4 2.6E-07 9E-12 69.4 4.5 57 1-58 65-121 (210)
21 3d0s_A Transcriptional regulat 98.4 1.3E-07 4.5E-12 72.3 2.5 56 1-58 75-130 (227)
22 3dkw_A DNR protein; CRP-FNR, H 98.3 2.4E-07 8.2E-12 70.4 3.7 56 1-58 78-134 (227)
23 3kcc_A Catabolite gene activat 98.3 4.1E-07 1.4E-11 72.0 4.5 57 1-58 115-171 (260)
24 1wgp_A Probable cyclic nucleot 98.3 8.8E-08 3E-12 67.7 0.5 52 1-52 76-134 (137)
25 2gau_A Transcriptional regulat 98.3 2.6E-07 9E-12 70.8 2.9 56 1-58 79-134 (232)
26 3dv8_A Transcriptional regulat 98.3 2E-07 6.8E-12 70.6 2.2 56 1-58 72-129 (220)
27 3iwz_A CAP-like, catabolite ac 98.3 7.2E-07 2.5E-11 67.9 5.2 57 1-58 80-141 (230)
28 3pna_A CAMP-dependent protein 98.3 1.6E-07 5.4E-12 68.3 1.3 52 1-54 102-153 (154)
29 3beh_A MLL3241 protein; transm 98.3 9.5E-08 3.3E-12 79.6 0.0 62 1-66 290-351 (355)
30 3fx3_A Cyclic nucleotide-bindi 98.3 2.4E-07 8.4E-12 71.2 2.0 56 1-58 80-135 (237)
31 3la7_A Global nitrogen regulat 98.3 5.6E-07 1.9E-11 70.3 4.0 58 1-58 89-146 (243)
32 2qcs_B CAMP-dependent protein 98.2 1.1E-06 3.8E-11 69.5 5.1 114 1-116 103-282 (291)
33 3of1_A CAMP-dependent protein 98.2 2.4E-07 8.1E-12 71.0 1.1 51 1-53 190-240 (246)
34 4ava_A Lysine acetyltransferas 98.2 3.3E-07 1.1E-11 74.4 1.7 55 1-58 81-135 (333)
35 4din_B CAMP-dependent protein 98.2 8.4E-07 2.9E-11 74.9 4.0 56 1-58 318-373 (381)
36 3tnp_B CAMP-dependent protein 98.2 7.5E-07 2.6E-11 76.4 3.0 55 1-57 342-396 (416)
37 3dn7_A Cyclic nucleotide bindi 98.2 5E-07 1.7E-11 67.4 1.6 56 1-58 76-132 (194)
38 3e6c_C CPRK, cyclic nucleotide 98.1 2.3E-06 7.7E-11 66.7 4.8 53 1-58 78-130 (250)
39 2fmy_A COOA, carbon monoxide o 98.1 2.3E-06 7.8E-11 65.2 3.6 49 1-58 72-120 (220)
40 1o7f_A CAMP-dependent RAP1 gua 98.0 1.4E-06 4.8E-11 73.9 2.1 55 1-57 403-458 (469)
41 3of1_A CAMP-dependent protein 98.0 9E-07 3.1E-11 67.7 0.5 109 1-111 71-240 (246)
42 4din_B CAMP-dependent protein 98.0 4.4E-06 1.5E-10 70.5 4.6 114 1-116 194-373 (381)
43 1o7f_A CAMP-dependent RAP1 gua 98.0 1.9E-06 6.4E-11 73.1 1.6 54 1-57 113-166 (469)
44 1ft9_A Carbon monoxide oxidati 97.9 4.6E-06 1.6E-10 63.7 3.1 49 1-58 68-116 (222)
45 3b02_A Transcriptional regulat 97.9 6.9E-06 2.4E-10 61.7 3.1 49 1-58 45-93 (195)
46 3tnp_B CAMP-dependent protein 97.8 5.2E-06 1.8E-10 71.1 2.3 113 1-115 213-396 (416)
47 2d93_A RAP guanine nucleotide 97.8 7.6E-06 2.6E-10 57.8 1.6 47 1-49 81-128 (134)
48 2bgc_A PRFA; bacterial infecti 97.7 2.8E-05 9.7E-10 60.2 4.5 56 3-58 65-121 (238)
49 4f7z_A RAP guanine nucleotide 97.5 4.1E-05 1.4E-09 71.8 3.3 46 1-48 403-449 (999)
50 4f7z_A RAP guanine nucleotide 97.5 4.6E-05 1.6E-09 71.5 3.2 51 1-54 113-163 (999)
51 4f8a_A Potassium voltage-gated 97.1 0.00016 5.6E-09 51.6 2.2 50 78-127 110-159 (160)
52 2zcw_A TTHA1359, transcription 97.1 9.2E-05 3.1E-09 55.6 0.7 48 1-58 53-100 (202)
53 3cf6_E RAP guanine nucleotide 96.5 0.00028 9.5E-09 65.0 -0.9 54 1-56 98-152 (694)
54 3ukn_A Novel protein similar t 96.5 0.00077 2.6E-08 51.1 1.5 51 78-128 158-210 (212)
55 2ptm_A Hyperpolarization-activ 90.7 0.097 3.3E-06 38.9 1.8 39 78-116 153-191 (198)
56 3bpz_A Potassium/sodium hyperp 89.8 0.098 3.4E-06 39.1 1.1 39 78-116 153-191 (202)
57 3mdp_A Cyclic nucleotide-bindi 87.2 0.26 8.8E-06 33.7 1.8 39 78-116 95-133 (142)
58 1vp6_A CNBD, cyclic-nucleotide 80.7 0.73 2.5E-05 31.4 1.8 39 78-116 90-128 (138)
59 2z69_A DNR protein; beta barre 78.1 0.87 3E-05 31.4 1.6 39 78-116 99-137 (154)
60 3gyd_A CNMP-BD protein, cyclic 77.5 1.2 4E-05 32.9 2.3 39 78-116 125-163 (187)
61 2pqq_A Putative transcriptiona 76.5 1.3 4.3E-05 30.3 2.0 39 78-116 91-129 (149)
62 3idb_B CAMP-dependent protein 70.2 0.68 2.3E-05 32.8 -0.7 37 79-115 124-160 (161)
63 2oz6_A Virulence factor regula 68.5 2.2 7.5E-05 31.0 1.8 39 78-116 80-118 (207)
64 4ev0_A Transcription regulator 68.1 2.2 7.5E-05 31.2 1.8 39 78-116 85-123 (216)
65 1o5l_A Transcriptional regulat 67.9 2.2 7.6E-05 31.7 1.8 39 78-116 86-124 (213)
66 3dv8_A Transcriptional regulat 66.4 2.5 8.7E-05 31.0 1.8 39 78-116 91-129 (220)
67 3e97_A Transcriptional regulat 66.2 2.6 9E-05 31.3 1.9 39 78-116 92-130 (231)
68 3dkw_A DNR protein; CRP-FNR, H 63.7 2.6 8.7E-05 31.1 1.4 39 78-116 96-134 (227)
69 1ft9_A Carbon monoxide oxidati 63.3 2.4 8.3E-05 31.5 1.2 39 78-116 78-116 (222)
70 1zyb_A Transcription regulator 62.8 2.9 0.0001 31.4 1.6 39 78-116 107-145 (232)
71 3d0s_A Transcriptional regulat 62.4 2.3 7.9E-05 31.5 0.9 39 78-116 92-130 (227)
72 3beh_A MLL3241 protein; transm 61.9 1.6 5.6E-05 35.6 0.0 39 78-116 307-345 (355)
73 2gau_A Transcriptional regulat 61.4 3.5 0.00012 30.6 1.8 39 78-116 96-134 (232)
74 3ocp_A PRKG1 protein; serine/t 61.2 2.2 7.4E-05 29.3 0.5 35 78-112 104-138 (139)
75 2fmy_A COOA, carbon monoxide o 60.5 3 0.0001 30.9 1.2 39 78-116 82-120 (220)
76 3ryp_A Catabolite gene activat 60.1 3.1 0.00011 30.2 1.3 39 78-116 83-121 (210)
77 3kcc_A Catabolite gene activat 59.5 3.2 0.00011 32.0 1.3 39 78-116 133-171 (260)
78 3fx3_A Cyclic nucleotide-bindi 58.9 4.1 0.00014 30.4 1.8 39 78-116 97-135 (237)
79 3iwz_A CAP-like, catabolite ac 58.2 4.6 0.00016 29.8 1.9 39 78-116 98-141 (230)
80 1wgp_A Probable cyclic nucleot 56.1 1.3 4.4E-05 30.2 -1.4 33 79-111 103-135 (137)
81 4ava_A Lysine acetyltransferas 55.8 3.5 0.00012 32.7 1.0 38 78-116 98-135 (333)
82 3e6c_C CPRK, cyclic nucleotide 55.2 4.2 0.00014 30.8 1.3 39 78-116 92-130 (250)
83 3dn7_A Cyclic nucleotide bindi 54.3 3.9 0.00014 29.5 1.0 39 78-116 94-132 (194)
84 3la7_A Global nitrogen regulat 51.3 5.7 0.0002 30.1 1.5 37 80-116 110-146 (243)
85 3pna_A CAMP-dependent protein 39.3 8.1 0.00028 26.9 0.6 34 78-111 119-152 (154)
86 1dqi_A SOR, superoxide reducta 29.5 13 0.00046 27.4 0.4 17 21-37 102-118 (124)
87 2bgc_A PRFA; bacterial infecti 25.1 34 0.0012 25.5 2.0 37 80-116 84-121 (238)
88 3b02_A Transcriptional regulat 22.4 34 0.0011 24.6 1.4 33 78-116 61-93 (195)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.18 E-value=1.9e-11 Score=93.81 Aligned_cols=69 Identities=42% Similarity=0.675 Sum_probs=60.7
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh--hhhhhcccccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL--LLTYNLRHRKR 69 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L--~Lt~nLR~~~~ 69 (154)
+++||+|||..++.+...++.++|+|+|+|.+.+|++++|.++++.||+++..|.+.+ .|+++||+.+.
T Consensus 139 l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~~ 209 (212)
T 3ukn_A 139 LGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGSG 209 (212)
T ss_dssp ECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC---
T ss_pred ecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccccccccc
Confidence 5899999999999874337999999999999999999999999999999999999998 68888888654
No 2
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.11 E-value=5e-11 Score=86.23 Aligned_cols=67 Identities=70% Similarity=1.215 Sum_probs=61.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 67 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~ 67 (154)
+++||+|||..++.+...++.++|+|+|.|.+..|++++|.++++.+|+++..|.+.|..+|++|+.
T Consensus 91 ~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~l~~~ 157 (160)
T 4f8a_A 91 LGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKR 157 (160)
T ss_dssp EETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCCCSEETTSC
T ss_pred ecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 4789999999998875456899999999999999999999999999999999999999999998874
No 3
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=98.91 E-value=2e-09 Score=76.13 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+|||..++.+ .++.++|+|++.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 78 ~~~G~~fG~~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l 133 (142)
T 3mdp_A 78 VVPGAIFGVSSLIKP--YHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNV 133 (142)
T ss_dssp ECTTCEECGGGSSTT--CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ecCCCEechHHHcCC--CCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 478999999999976 55899999999999999999999999999999999999886
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=98.87 E-value=8.6e-10 Score=83.71 Aligned_cols=61 Identities=25% Similarity=0.437 Sum_probs=53.7
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLR 65 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR 65 (154)
+++||+|||..++.+ .++.++|+|+|+|++..|++++|.++++.+|+++..|.+. ++.+|+
T Consensus 136 l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~--~~~rl~ 196 (198)
T 2ptm_A 136 LSDGSYFGEICLLTR--ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEI--AVRRLT 196 (198)
T ss_dssp ECTTCEESCHHHHHS--SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH--HHTCC-
T ss_pred ecCCCEechHHHcCC--CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHH--HHHHHh
Confidence 579999999988877 4589999999999999999999999999999999999887 554444
No 5
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=98.82 E-value=8.1e-10 Score=84.31 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=55.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 67 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~ 67 (154)
|++||+|||..++.+ .++.++|+|+|+|.+..|++++|.++++.+|+++..|.+. ++.+++..
T Consensus 136 l~~G~~fGe~~~~~~--~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~--~~~rl~~~ 198 (202)
T 3bpz_A 136 LSDGSYFGEICLLTR--GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV--AIDRLDRI 198 (202)
T ss_dssp EETTCEECHHHHHHC--SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH--HHHHHHHC
T ss_pred EcCCCEeccHHHhcC--CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH--HHHHHHHh
Confidence 478999999988877 4589999999999999999999999999999999999887 55566554
No 6
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=98.67 E-value=2.2e-08 Score=71.52 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=56.2
Q ss_pred CCCCCcccccCCCCCCCcc-cceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhccccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQ-SAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRK 68 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~-rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~~ 68 (154)
+++||+||+..++.+ .+ +.++|+|+|.|.+..|++++|.++++.+|+++..+.+. ++.+++...
T Consensus 81 ~~~G~~~G~~~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~--~~~rl~~~~ 145 (154)
T 2z69_A 81 TNERNTFAEAMMFMD--TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAK--LSTRLHQRI 145 (154)
T ss_dssp ECTTEEESGGGGGSS--CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHH--HHHHHTCCS
T ss_pred ccCCCeeccHhhccC--CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHH--HHHHHHHHH
Confidence 478999999998876 45 78999999999999999999999999999999999988 566666543
No 7
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=98.66 E-value=1e-08 Score=72.45 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=54.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRH 66 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~ 66 (154)
+++||+||+..++.+ .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+. ++.+++.
T Consensus 73 ~~~G~~~G~~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~--~~~r~~~ 134 (138)
T 1vp6_A 73 LGPGAFFGEMALISG--EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKT--ALERRGA 134 (138)
T ss_dssp ECTTCEECHHHHHHC--CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHH--HHHHCC-
T ss_pred ECCCCEeeehHhccC--CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHH--HHHhhcc
Confidence 479999999988877 3578999999999999999999999999999999999988 6665554
No 8
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=98.62 E-value=3.2e-08 Score=70.14 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=55.1
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 67 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~ 67 (154)
+++||+||+..++.+ .++.++|+|++.|.+..|++++|.++++.+|+++..+.+. ++.+++..
T Consensus 74 ~~~g~~~G~~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~--~~~~l~~~ 136 (149)
T 2pqq_A 74 VGPSELIGELSLFDP--GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA--VARRLRKT 136 (149)
T ss_dssp ECTTCEESGGGGTSC--EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH--HHHHHHHH
T ss_pred cCCcCEechHHhcCC--CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH--HHHHHHHH
Confidence 478999999988887 4689999999999999999999999999999999999988 55555544
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=98.61 E-value=1.3e-08 Score=77.22 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=57.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh--hhhhhcccccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL--LLTYNLRHRKR 69 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L--~Lt~nLR~~~~ 69 (154)
+++||+|||..++.+ .++.++|+|+|.|.+..|++++|.++++.+|+++..+.+++ .++.++|....
T Consensus 108 ~~~G~~fGe~~~l~~--~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~ 176 (187)
T 3gyd_A 108 VGAGAIIGEMSMIDG--MPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYD 176 (187)
T ss_dssp EETTCEESHHHHHHC--CCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeeeeHHHhCC--CCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999998877 45899999999999999999999999999999999998664 36666665443
No 10
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.53 E-value=3.8e-08 Score=75.36 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+. .++.++|.|++.|.+..|++++|.++++.+|+|+..|.+.+
T Consensus 68 ~~~G~~~G~~~~~~~~-~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 124 (213)
T 1o5l_A 68 IKPVQIIASGFIFSSE-PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV 124 (213)
T ss_dssp ECSSEESSGGGTTSSS-CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ecCCCEeeeHHHhcCC-CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 4789999999988762 25789999999999999999999999999999999998884
No 11
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=98.50 E-value=2.2e-08 Score=73.21 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=47.6
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
+++||+|||..++.+ .++.++|.|++.|.+..|++++|.++++.+|.++..++++
T Consensus 106 ~~~G~~fGe~~~~~~--~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 160 (161)
T 3idb_B 106 YDNRGSFGELALMYN--TPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYES 160 (161)
T ss_dssp EESCCEECGGGGTCC--CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC---
T ss_pred cCCCCEechHHHHcC--CCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHhc
Confidence 468999999999987 4589999999999999999999999999999988766654
No 12
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=98.49 E-value=2.6e-08 Score=79.61 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHR 67 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~ 67 (154)
+++||+|||.+++.+ .++.++|+|++.|.+..|++++|.++++.+|+++..|.+. ++.+++..
T Consensus 227 l~~G~~fGe~~ll~~--~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~--l~~r~~~~ 289 (299)
T 3shr_A 227 LGKGDWFGEKALQGE--DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYED--AEAKAKYE 289 (299)
T ss_dssp EETTCEECGGGGSSS--EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHH--HHHHHHHH
T ss_pred cCCCCEeChHHHhCC--CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHH--Hhhhhhcc
Confidence 468999999999987 5689999999999999999999999999999999999998 55555543
No 13
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=98.48 E-value=4.3e-08 Score=78.34 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=84.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh----------------hhhhhc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL----------------LLTYNL 64 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L----------------~Lt~nL 64 (154)
+++||+|||.+++.+ .+++++|+|+|.|.+.+|++++|.++++.+|.........+ .|...+
T Consensus 103 ~~~G~~fGe~~ll~~--~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~ 180 (299)
T 3shr_A 103 MGPGKVFGELAILYN--CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVL 180 (299)
T ss_dssp ECTTCEESCSGGGTT--TBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTC
T ss_pred eCCCCeeeHhHHhcC--CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhc
Confidence 478999999999988 56899999999999999999999999999997765422221 111111
Q ss_pred ccc--ccc--------------------------C-c-------------c-----cc---ccccccccceeeecceeec
Q psy12115 65 RHR--KRD--------------------------S-I-------------N-----LF---VSSIISRIPLTYCDLHTIK 94 (154)
Q Consensus 65 R~~--~~~--------------------------~-~-------------~-----~~---~~Ss~s~~~~tyCDlh~i~ 94 (154)
+.. ..+ . . + .. .....++.|.+.|.+-.|+
T Consensus 181 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~ 260 (299)
T 3shr_A 181 EETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVID 260 (299)
T ss_dssp EEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEE
T ss_pred cEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEe
Confidence 100 000 0 0 0 00 0134577889999999999
Q ss_pred CcchHHHhhhhHHHHHHhhhcc
Q psy12115 95 RDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 95 ~~~L~~vl~~ypef~~~f~~~l 116 (154)
++++.++++-+|+++..|.+.+
T Consensus 261 ~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 261 RDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHH
Confidence 9999999999999999998875
No 14
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.44 E-value=1.8e-07 Score=70.17 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=49.7
Q ss_pred CCCCCcccccCCCCCCCc--ccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVG--QSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g--~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+... ++.++|.|++.|.+..|++++|.++++.+|+++..|.+.+
T Consensus 59 ~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 118 (207)
T 2oz6_A 59 LNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQM 118 (207)
T ss_dssp EETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHH
Confidence 468999999998877310 5889999999999999999999999999999999888874
No 15
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=98.42 E-value=5.2e-08 Score=69.36 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=40.8
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f 54 (154)
+++||+|||..++.+ .++.++|+|+|.|.+..|++++|.++++.+|.++.++
T Consensus 87 ~~~G~~fGe~~~l~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 87 MGPGKVFGELAILYN--CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp ECTTCEESCHHHHHC--CCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred eCCCCEeccHHHHCC--CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 478999999998877 5589999999999999999999999999999988653
No 16
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.42 E-value=9.2e-08 Score=74.10 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCCCCcccccCCCCCCCcc-cceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhcccccccCcccccccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQ-SAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRKRDSINLFVSSI 79 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~-rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~~~~~~~~~~~~Ss 79 (154)
+++||+|||..++.+ .. +.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+ +.+++.....-......+.
T Consensus 89 ~~~G~~fG~~~~~~~--~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l--~~~l~~~~~~~~~l~~~~~ 164 (232)
T 1zyb_A 89 IEAPYLIEPQSLFGM--NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIV--SNRAQNLYSRLWDEPTLDL 164 (232)
T ss_dssp EESSEEECGGGGSSS--CCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHH--HHHHHHHHHHTTSCCCCSH
T ss_pred ccCCCeeeehHHhCC--CCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCH
Confidence 468999999998876 34 789999999999999999999999999999999998884 3333332211000000011
Q ss_pred ccccce---eee------cceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 80 ISRIPL---TYC------DLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 80 ~s~~~~---tyC------Dlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
..+.+. ..+ -...+++..|++.++.=++--.+..+.|
T Consensus 165 ~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l 210 (232)
T 1zyb_A 165 KSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNEL 210 (232)
T ss_dssp HHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHH
Confidence 011000 000 0134677888888877776655555443
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.41 E-value=2.2e-07 Score=71.26 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 75 ~~~g~~~G~~~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 130 (231)
T 3e97_A 75 IYAPGVVGETAVLAH--QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEML 130 (231)
T ss_dssp EESSEEESTTTTTCC--CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCEEeeHHHhCC--CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 468999999999887 55899999999999999999999999999999999998874
No 18
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=98.40 E-value=1.5e-07 Score=74.59 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
|++||+|||..++.+ .++.++|.|.|.|.+..|++++|.++++.+|++...+.+.+
T Consensus 227 l~~G~~fGe~~ll~~--~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 227 LGPSDYFGEIALLMN--RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp ECTTCEECSGGGTCC--CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred eCCCCEecHHHHcCC--CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 579999999999987 44899999999999999999999999999999888777664
No 19
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.38 E-value=1.3e-07 Score=71.43 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=51.1
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 68 ~~~g~~~G~~~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 123 (216)
T 4ev0_A 68 LGPGELFGEMSLLDE--GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALL 123 (216)
T ss_dssp ECTTCEECHHHHHHC--CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ecCCCEEeehhhcCC--CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHH
Confidence 478999999888877 45899999999999999999999999999999999998874
No 20
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.38 E-value=2.6e-07 Score=69.44 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=50.9
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+. .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 65 ~~~g~~~G~~~~~~~~-~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (210)
T 3ryp_A 65 LNQGDFIGELGLFEEG-QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121 (210)
T ss_dssp EETTCEESCTTTTSTT-CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred cCCCCEeeeHHHhcCC-CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 4689999999988873 15889999999999999999999999999999999988773
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=98.36 E-value=1.3e-07 Score=72.31 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 75 ~~~G~~~G~~~~~~~--~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 130 (227)
T 3d0s_A 75 MGPSDMFGELSIFDP--GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVL 130 (227)
T ss_dssp ECTTCEESCHHHHSC--SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHH
T ss_pred ecCCCEEeeHHHcCC--CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 478999999988877 45899999999999999999999999999999999998874
No 22
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=98.35 E-value=2.4e-07 Score=70.45 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=50.9
Q ss_pred CCCCCcccccCCCCCCCcc-cceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQ-SAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~-rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .+ +.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 78 ~~~g~~~G~~~~~~~--~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 134 (227)
T 3dkw_A 78 TNERNTFAEAMMFMD--TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKL 134 (227)
T ss_dssp ECTTEEESCTTTTTT--CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHH
T ss_pred cCCCCEeeeHHhcCC--CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 478999999998876 44 789999999999999999999999999999999988874
No 23
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.32 E-value=4.1e-07 Score=72.04 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=51.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+.. ++.++|+|+|.|.+..|++++|.++++.+|+++..|.+.+
T Consensus 115 ~~~G~~~Ge~~~~~~~~-~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l 171 (260)
T 3kcc_A 115 LNQGDFIGELGLFEEGQ-ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 171 (260)
T ss_dssp EETTCEESCTTTTSTTC-BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred cCCCCEEeehHHhCCCC-CCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 46899999999888731 5899999999999999999999999999999999988774
No 24
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.32 E-value=8.8e-08 Score=67.67 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=44.3
Q ss_pred CCCCCcccccCC---CCCCCc----ccceeEeEeeeeceEEeehhhHHHHHhhcHHHHH
Q psy12115 1 MSKGDVFGDSFW---KDNAVG----QSAANVRALTYCDLHTIKRDRLLEVLDFYQAFAN 52 (154)
Q Consensus 1 LGkGD~FGE~~~---l~~~~g----~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~ 52 (154)
+++||+|||..+ +.+.+. ++.++|+|+|.|.+..|++++|.++++.+|+++.
T Consensus 76 l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 76 LKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp CCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred ecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 579999999984 555322 4689999999999999999999999999998764
No 25
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.30 E-value=2.6e-07 Score=70.82 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=51.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 79 ~~~G~~~G~~~~~~~--~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 134 (232)
T 2gau_A 79 VKPGQFFGMRPYFAE--ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKAL 134 (232)
T ss_dssp ECTTCEESHHHHHHT--SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eCCCCEeeeehhhCC--CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 478999999988776 35889999999999999999999999999999999998884
No 26
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=98.30 E-value=2e-07 Score=70.59 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCCCCc--ccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDV--FGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~--FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+ ||+..++.+ .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 72 ~~~G~~~~~g~~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l 129 (220)
T 3dv8_A 72 LFDMDMCLLSASCIMRS--IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELM 129 (220)
T ss_dssp ECTTCEESGGGGGGCTT--CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCeeehhHHHHhCC--CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 478999 899998887 44899999999999999999999999999999999998874
No 27
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.29 E-value=7.2e-07 Score=67.91 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=50.8
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhc-----HHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFY-----QAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~y-----Pefa~~f~~~L 58 (154)
+++||+|||..++.+. .++.++|.|+|.|.+..|++++|.++++.+ |+++..+.+.+
T Consensus 80 ~~~g~~~G~~~~~~~~-~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l 141 (230)
T 3iwz_A 80 FGSGEFVGEMGLFIES-DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQL 141 (230)
T ss_dssp ECTTCEESCGGGTSCC-SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHH
T ss_pred ecCCCEEEehhhhcCC-CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 4789999999988762 147899999999999999999999999999 99999988874
No 28
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=98.29 E-value=1.6e-07 Score=68.29 Aligned_cols=52 Identities=25% Similarity=0.230 Sum_probs=45.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f 54 (154)
+++||+|||..++.+ .++.++|.|+|.|.+..|++++|.++++.+|.++..+
T Consensus 102 ~~~G~~fGe~~~~~~--~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 102 VGEGGSFGELALIYG--TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp ECTTCEECCHHHHHC--CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred ecCCCEeeehHhhcC--CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 478999999998887 4579999999999999999999999999999887654
No 29
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.28 E-value=9.5e-08 Score=79.56 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhhhhhhhccc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRH 66 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L~Lt~nLR~ 66 (154)
+++||+|||...+.+ .++.++|+|++.|++..|++++|.++++.+|+++..+.+. ++.++++
T Consensus 290 l~~G~~fGe~~~l~~--~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~--l~~rl~~ 351 (355)
T 3beh_A 290 LGPGAFFGEMALISG--EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKT--ALERRGA 351 (355)
T ss_dssp ------------------------------------------------------------------
T ss_pred ECCCCEEeehHHhCC--CCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHH--HHHHHHh
Confidence 579999999988887 4588999999999999999999999999999999999887 5555544
No 30
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.26 E-value=2.4e-07 Score=71.21 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=51.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+ .++.++|.|++.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 80 ~~~G~~~G~~~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 135 (237)
T 3fx3_A 80 FTRGESFGEAVALRN--TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATT 135 (237)
T ss_dssp EETTEEECHHHHHHT--CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eCCCCEechHHHhcC--CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 468999999998876 45899999999999999999999999999999999998874
No 31
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.26 E-value=5.6e-07 Score=70.27 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=51.8
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+..++.+.+..+.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 89 ~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 146 (243)
T 3la7_A 89 LRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGL 146 (243)
T ss_dssp ECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 4789999999888875545668999999999999999999999999999999998874
No 32
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=98.23 E-value=1.1e-06 Score=69.47 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh----h------------hhhhc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL----L------------LTYNL 64 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L----~------------Lt~nL 64 (154)
+++||+|||..++.+ .++.++|+|+|.|.+..|++++|.+++..+|+++..+...+ . |...+
T Consensus 103 l~~G~~fGe~~l~~~--~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~ 180 (291)
T 2qcs_B 103 VGEGGSFGELALIYG--TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADAL 180 (291)
T ss_dssp ECTTCEECGGGGTCC--CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHC
T ss_pred cCCCCccchHHHhcC--CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHHhhc
Confidence 478999999999887 45899999999999999999999999999999987765442 1 11111
Q ss_pred c------------cccc--------------------c-C---------cc-----cc---ccccccccceeeecceeec
Q psy12115 65 R------------HRKR--------------------D-S---------IN-----LF---VSSIISRIPLTYCDLHTIK 94 (154)
Q Consensus 65 R------------~~~~--------------------~-~---------~~-----~~---~~Ss~s~~~~tyCDlh~i~ 94 (154)
+ ++.. + . .+ .. .....++.|.+.|.+-.|+
T Consensus 181 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~ 260 (291)
T 2qcs_B 181 EPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLD 260 (291)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEE
T ss_pred EEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEEc
Confidence 1 1000 0 0 00 00 0124577899999999999
Q ss_pred CcchHHHhhhhHHHHHHhhhcc
Q psy12115 95 RDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 95 ~~~L~~vl~~ypef~~~f~~~l 116 (154)
++++.+++.-+|++...+.+.+
T Consensus 261 ~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 261 RPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp HHHHHHHHCCHHHHHTTSHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999887766553
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.4e-07 Score=70.96 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=46.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANS 53 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~ 53 (154)
|++||+|||..++.+ .+++++|+|++.|.+..|++++|.++++.+|++..+
T Consensus 190 l~~g~~fGe~~~~~~--~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 190 LKDHDYFGEVALLND--LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp EETTCEECHHHHHHT--CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred cCCCCcccHHHHhCC--CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 478999999999887 458999999999999999999999999999987654
No 34
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.21 E-value=3.3e-07 Score=74.41 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+|||.+++.+ .+++++|.|+|.|.+..|++++|.+++ .+|+++..|.+.+
T Consensus 81 ~~~G~~fGe~~l~~~--~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~ 135 (333)
T 4ava_A 81 ALPGMIVGEIALLRD--SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTA 135 (333)
T ss_dssp ECTTCEESHHHHHHT--CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHH
T ss_pred ecCCCEeeHHHhcCC--CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHH
Confidence 478999999998887 558999999999999999999999999 9999999999884
No 35
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.20 E-value=8.4e-07 Score=74.91 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=51.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
|++||+|||.+++.+ .++.++|.|++.|.+.+|++++|.++|+.+|++...+.++.
T Consensus 318 l~~Gd~fGe~all~~--~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 318 LGPSDYFGEIALLLN--RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp ECTTCEECTTGGGSC--CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred eCCCCEechHHHhCC--CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 579999999999988 45899999999999999999999999999999988777663
No 36
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.16 E-value=7.5e-07 Score=76.40 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
|++||+|||.+++.+ .+++++|+|++.|.+.+|++++|.++|+.+|++...+.+.
T Consensus 342 l~~G~~fGE~all~~--~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~ 396 (416)
T 3tnp_B 342 CFRGQYFGELALVTN--KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIAT 396 (416)
T ss_dssp ECTTCEESGGGGTCC--SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC---
T ss_pred eCCCCEecHHHHhCC--CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHH
Confidence 578999999999987 4599999999999999999999999999999998776665
No 37
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.16 E-value=5e-07 Score=67.44 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCCccccc-CCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDS-FWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~-~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+|||. .++.+ .++.++|.|++.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 76 ~~~g~~~ge~~~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 132 (194)
T 3dn7_A 76 AIENWWLSDYMAFQKQ--QPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVY 132 (194)
T ss_dssp EETTCEECCHHHHHHT--CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ccCCcEEeehHHHhcC--CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHH
Confidence 3689999987 55565 44789999999999999999999999999999999988774
No 38
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.13 E-value=2.3e-06 Score=66.75 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=47.7
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+ .+.+ . +.++|.|+|.|.+..|+++.|.++++.+|+++..+.+.+
T Consensus 78 ~~~G~~~G~--~l~~--~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 130 (250)
T 3e6c_C 78 AGGNSLIGK--LYPT--G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNY 130 (250)
T ss_dssp ECTTCEECC--CSCC--S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHH
T ss_pred ecCCCEEee--ecCC--C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 478999999 5554 3 899999999999999999999999999999999998874
No 39
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.06 E-value=2.3e-06 Score=65.17 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=45.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+ ++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 72 ~~~G~~~G~---------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 120 (220)
T 2fmy_A 72 LEAGDIFCT---------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVL 120 (220)
T ss_dssp EETTCEEES---------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred cCCCCEeCC---------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 468999999 4789999999999999999999999999999999988874
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.03 E-value=1.4e-06 Score=73.87 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=44.7
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEee-eeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALT-YCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALT-YCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
+++||+|||.+++.+ .++.++|+|++ .|.+.+|++++|.++++.+|+++..+.+.
T Consensus 403 l~~G~~fGe~~ll~~--~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 403 LHEGDDFGKLALVND--APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp EETTCEECGGGGTCC--SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred ecCCCEEEEehhhcC--CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 478999999999987 45999999999 79999999999999999999999988765
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=98.01 E-value=9e-07 Score=67.68 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=78.9
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh----------------hhhhhc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL----------------LLTYNL 64 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L----------------~Lt~nL 64 (154)
+++||+|||.+++.+ .++.++|+|+|.|.+..|++++|.+++..+|.++..+...+ .|...+
T Consensus 71 ~~~g~~fGe~~l~~~--~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~ 148 (246)
T 3of1_A 71 SGPGSSFGELALMYN--SPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADAL 148 (246)
T ss_dssp ECTTCEECHHHHHHT--CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTC
T ss_pred cCCCCeeehhHHhcC--CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhh
Confidence 478999999999987 55899999999999999999999999999997766543332 111111
Q ss_pred ccc--ccc-------------------Cc----------------c--------ccccccccccceeeecceeecCcchH
Q psy12115 65 RHR--KRD-------------------SI----------------N--------LFVSSIISRIPLTYCDLHTIKRDRLL 99 (154)
Q Consensus 65 R~~--~~~-------------------~~----------------~--------~~~~Ss~s~~~~tyCDlh~i~~~~L~ 99 (154)
... ..+ .. + .......++.|.+.|.+-.|+++++.
T Consensus 149 ~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~ 228 (246)
T 3of1_A 149 DTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQ 228 (246)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHH
T ss_pred heEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHH
Confidence 110 000 00 0 00113457788999999999999999
Q ss_pred HHhhhhHHHHHH
Q psy12115 100 EVLDFYQAFANS 111 (154)
Q Consensus 100 ~vl~~ypef~~~ 111 (154)
++++-+|++...
T Consensus 229 ~ll~~~~~~~~~ 240 (246)
T 3of1_A 229 RLLGPAVDVLKL 240 (246)
T ss_dssp HHCTTHHHHHHH
T ss_pred HHhccHHHHHhc
Confidence 999988887653
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.00 E-value=4.4e-06 Score=70.46 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=84.0
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh----------------hhhhhc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL----------------LLTYNL 64 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L----------------~Lt~nL 64 (154)
+++||+|||.+++.+ .++.++|+|+|.|.+..|++++|.+++..+|.++..+...+ .|...+
T Consensus 194 l~~G~~fGe~all~~--~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~ 271 (381)
T 4din_B 194 ISEGGSFGELALIYG--TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADAL 271 (381)
T ss_dssp EESSCCBCGGGGTSC--CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTC
T ss_pred CCCCCEEEchHHhcC--CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhh
Confidence 478999999999998 45899999999999999999999999999999887644432 111111
Q ss_pred c------------cccc---------cCc---------------------c-----cc---ccccccccceeeecceeec
Q psy12115 65 R------------HRKR---------DSI---------------------N-----LF---VSSIISRIPLTYCDLHTIK 94 (154)
Q Consensus 65 R------------~~~~---------~~~---------------------~-----~~---~~Ss~s~~~~tyCDlh~i~ 94 (154)
+ ++.. +.. + .. ....+++.|.+.|.+-.|+
T Consensus 272 ~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~ 351 (381)
T 4din_B 272 EPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLD 351 (381)
T ss_dssp BCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEE
T ss_pred hhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEe
Confidence 1 1000 000 0 00 0134578899999999999
Q ss_pred CcchHHHhhhhHHHHHHhhhcc
Q psy12115 95 RDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 95 ~~~L~~vl~~ypef~~~f~~~l 116 (154)
++++.+++.-+|++...+..++
T Consensus 352 ~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 352 RPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp HHHHHHHHCCHHHHHHTTHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999988766553
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=97.96 E-value=1.9e-06 Score=73.07 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=49.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARN 57 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~ 57 (154)
+++||+|||.+ +.+ .++.++|+|+|.|.+..|++++|.++++.+|+++..+.+.
T Consensus 113 ~~~G~~fGe~~-l~~--~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~ 166 (469)
T 1o7f_A 113 LGIGTAFGESI-LDN--TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAP 166 (469)
T ss_dssp ECTTCEECGGG-GGT--CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCT
T ss_pred ccCCCCcchhh-hCC--CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHH
Confidence 47899999998 877 5589999999999999999999999999999999888776
No 44
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=97.92 E-value=4.6e-06 Score=63.70 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+|| .++.++|.|+|.|.+..|++++|.++++.+|+++..+.+.+
T Consensus 68 ~~~G~~fG---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 116 (222)
T 1ft9_A 68 LTSGDMFC---------MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAIL 116 (222)
T ss_dssp EETTCEEE---------SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCCCCEec---------CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 46899999 34789999999999999999999999999999999988874
No 45
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=97.86 E-value=6.9e-06 Score=61.67 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=43.5
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||| .++.+ .++.++|.|+|.|.+..|++++|. |+|+..|.+.+
T Consensus 45 ~~~G~~~Ge-~~~~~--~~~~~~~~A~~~~~v~~i~~~~~~------p~~~~~~~~~l 93 (195)
T 3b02_A 45 VLPGDYFGE-EALEG--KAYRYTAEAMTEAVVQGLEPRAMD------HEALHRVARNL 93 (195)
T ss_dssp ECTTCEECG-GGGTC--SBCSSEEEESSSEEEEEECGGGCC------HHHHHHHHHHH
T ss_pred ecCCCEech-hhhCC--CCceeEEEECCcEEEEEEcHHHcC------HHHHHHHHHHH
Confidence 478999999 88877 458999999999999999999998 99998888773
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=97.84 E-value=5.2e-06 Score=71.15 Aligned_cols=113 Identities=10% Similarity=0.022 Sum_probs=80.8
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh----------------hhhhhc
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL----------------LLTYNL 64 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L----------------~Lt~nL 64 (154)
+++||+|||.+++.+ .++.|+|+|+|.|.+..|++++|.+++..+|.++..+...+ .|...+
T Consensus 213 l~~G~~fGe~all~~--~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l 290 (416)
T 3tnp_B 213 YDNRGSFGELALMYN--TPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVI 290 (416)
T ss_dssp EESCCEECGGGGTSC--CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHC
T ss_pred ecCCCEEeeHHHhcC--CCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHHhhc
Confidence 468999999999998 55999999999999999999999999999999875533221 011111
Q ss_pred c------------cccc---------c--------C-------c-----------c-----c-c--ccccccccceeeec
Q psy12115 65 R------------HRKR---------D--------S-------I-----------N-----L-F--VSSIISRIPLTYCD 89 (154)
Q Consensus 65 R------------~~~~---------~--------~-------~-----------~-----~-~--~~Ss~s~~~~tyCD 89 (154)
. ++.. + . . + . . .....++.|.+.|.
T Consensus 291 ~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ 370 (416)
T 3tnp_B 291 GTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVK 370 (416)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEEE
T ss_pred eEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCceeEEEEcCCeE
Confidence 1 1100 0 0 0 0 0 0 01345788999999
Q ss_pred ceeecCcchHHHhhhhHHHHHHhhhc
Q psy12115 90 LHTIKRDRLLEVLDFYQAFANSFARN 115 (154)
Q Consensus 90 lh~i~~~~L~~vl~~ypef~~~f~~~ 115 (154)
+-.|+++++.+++.-+|++...+...
T Consensus 371 ll~I~~~~f~~ll~~~p~i~~~~~~~ 396 (416)
T 3tnp_B 371 CLAMDVQAFERLLGPCMEIMKRNIAT 396 (416)
T ss_dssp EEEEEHHHHHHHHCCHHHHHTCC---
T ss_pred EEEEEHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999999998765544
No 47
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=97.75 E-value=7.6e-06 Score=57.79 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=41.1
Q ss_pred CCCCCcccccCCCCCCCcccceeE-eEeeeeceEEeehhhHHHHHhhcHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANV-RALTYCDLHTIKRDRLLEVLDFYQA 49 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsV-rALTYCdL~~I~rddl~eVL~~yPe 49 (154)
+++||+||+..++.+ ..+.+++ .|+|.|.+..|++++|.++++.+++
T Consensus 81 l~~G~~fG~~~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 81 LFMGNSFGITPTLDK--QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp ECTTCEESCCSSSCC--EECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred ecCCCccChhHhcCC--CcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 478999999998887 4577778 9999999999999999999887763
No 48
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=97.72 E-value=2.8e-05 Score=60.16 Aligned_cols=56 Identities=20% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCCcccccCCCCCCCcccceeEeEe-eeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 3 KGDVFGDSFWKDNAVGQSAANVRAL-TYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 3 kGD~FGE~~~l~~~~g~rsAsVrAL-TYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+||+|||..++.+.+..+..++.|+ +.|.+..|++++|.++++.+|+++..|.+.+
T Consensus 65 ~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (238)
T 2bgc_A 65 KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTL 121 (238)
T ss_dssp ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 6999999998887432014556666 4999999999999999999999999998884
No 49
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=97.52 E-value=4.1e-05 Score=71.82 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=41.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEee-eeceEEeehhhHHHHHhhcH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALT-YCDLHTIKRDRLLEVLDFYQ 48 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALT-YCdL~~I~rddl~eVL~~yP 48 (154)
|++||.|||.+++.+. +|+|+|+|.+ .|++.+|++++|.++|+.-.
T Consensus 403 L~~Gd~FGElALL~~~--PR~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 403 LHEGDDFGKLALVNDA--PRAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EETTCEECGGGGTCSC--BCSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred ecCCCcccchhhccCC--CeeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 5799999999999994 4999999998 59999999999999998544
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=97.48 E-value=4.6e-05 Score=71.49 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=45.3
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHH
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSF 54 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f 54 (154)
|++||.||| +++.+ .+|+|+|+|.+.|.|.+|++++|..+++.||+....+
T Consensus 113 l~~G~sFGE-all~n--~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~~ 163 (999)
T 4f7z_A 113 LGIGTAFGE-SILDN--TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL 163 (999)
T ss_dssp EETTCEECG-GGGGT--CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred ecCCcchhh-hhccC--CCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHHH
Confidence 468999999 78887 4599999999999999999999999999999876543
No 51
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=97.14 E-value=0.00016 Score=51.55 Aligned_cols=50 Identities=64% Similarity=1.050 Sum_probs=46.8
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhccccccchhhhhh
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNLLLTYNLRHRLV 127 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l~lt~nlr~~~~ 127 (154)
+..++.|.+.|.+..|+++.+.++++-+|+++..|.++|+.+|++|++++
T Consensus 110 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~l~~~i~ 159 (160)
T 4f8a_A 110 SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIV 159 (160)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCCCSEETTSCCC
T ss_pred eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 46678899999999999999999999999999999999999999999875
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=97.13 E-value=9.2e-05 Score=55.60 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEeeeeceEEeehhhHHHHHhhcHHHHHHHhhhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 58 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALTYCdL~~I~rddl~eVL~~yPefa~~f~~~L 58 (154)
+++||+||+ ..+.+ .++.++|.|+|.|.+..| +++|. |+++..+.+.+
T Consensus 53 ~~~g~~~G~-~~l~~--~~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l 100 (202)
T 2zcw_A 53 VRPGGFFGE-EALFG--QERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHL 100 (202)
T ss_dssp ECTTCEECT-HHHHT--CCBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHH
T ss_pred ecCCCEeee-hhcCC--CCcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHH
Confidence 478999999 66665 447899999999999999 99886 88888887763
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=96.54 E-value=0.00028 Score=64.97 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=47.2
Q ss_pred CCCCCcccccCCCCCCCcccceeEeEee-eeceEEeehhhHHHHHhhcHHHHHHHhh
Q psy12115 1 MSKGDVFGDSFWKDNAVGQSAANVRALT-YCDLHTIKRDRLLEVLDFYQAFANSFAR 56 (154)
Q Consensus 1 LGkGD~FGE~~~l~~~~g~rsAsVrALT-YCdL~~I~rddl~eVL~~yPefa~~f~~ 56 (154)
+++||+|||.+++.+ .++.++|+|++ .|.+..|++++|.++++.+|+++..+.+
T Consensus 98 l~~Gd~fGe~al~~~--~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l~~ 152 (694)
T 3cf6_E 98 LHEGDDFGKLALVND--APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 152 (694)
T ss_dssp EETTCEECHHHHHHT--CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEEEE
T ss_pred eCCCCEeehHHHhCC--CCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 468999999988876 45899999999 5999999999999999999999776543
No 54
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=96.51 E-value=0.00077 Score=51.08 Aligned_cols=51 Identities=39% Similarity=0.583 Sum_probs=44.2
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc--ccccchhhhhhc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL--LLTYNLRHRLVS 128 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l--~lt~nlr~~~~~ 128 (154)
+..++.|+++|.+..|+++++.++++-||+++..|.+.+ .|+++||+....
T Consensus 158 ~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~~~ 210 (212)
T 3ukn_A 158 TNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGSGA 210 (212)
T ss_dssp BCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC----
T ss_pred cceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccccccc
Confidence 567889999999999999999999999999999999998 799999986543
No 55
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=90.70 E-value=0.097 Score=38.86 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=35.2
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..++.|+++|.+..|+++++.++++-||+++..|.+.+
T Consensus 153 ~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 153 RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 466888999999999999999999999999999887653
No 56
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=89.76 E-value=0.098 Score=39.06 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=35.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..++.|+++|.+..|+++++.++++-||+++..|.+.+
T Consensus 153 ~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (202)
T 3bpz_A 153 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA 191 (202)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 466788999999999999999999999999999887653
No 57
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=87.15 E-value=0.26 Score=33.75 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=35.3
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.++++-+|+++..+.+++
T Consensus 95 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l 133 (142)
T 3mdp_A 95 YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNV 133 (142)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 456788999999999999999999999999999888775
No 58
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=80.70 E-value=0.73 Score=31.42 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=34.6
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...+..|++.|.+-.|+++.+.++++-+|+++..+.+.+
T Consensus 90 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~ 128 (138)
T 1vp6_A 90 RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTA 128 (138)
T ss_dssp CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHH
Confidence 356788999999999999999999999999999887653
No 59
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=78.10 E-value=0.87 Score=31.43 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=35.2
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+|+++..+.+.+
T Consensus 99 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~ 137 (154)
T 2z69_A 99 YVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKL 137 (154)
T ss_dssp CSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHH
Confidence 466788999999999999999999999999999988775
No 60
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=77.54 E-value=1.2 Score=32.85 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=35.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...++.|++.|.+-.|+++.+.++++-+|+++..+.+++
T Consensus 125 ~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 163 (187)
T 3gyd_A 125 RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRL 163 (187)
T ss_dssp CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 456788999999999999999999999999999988665
No 61
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=76.52 E-value=1.3 Score=30.30 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=34.9
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.++++-+|+++..+.+.+
T Consensus 91 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~ 129 (149)
T 2pqq_A 91 RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAV 129 (149)
T ss_dssp CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHH
T ss_pred cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHH
Confidence 466788999999999999999999999999999988765
No 62
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=70.18 E-value=0.68 Score=32.82 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=30.7
Q ss_pred cccccceeeecceeecCcchHHHhhhhHHHHHHhhhc
Q psy12115 79 IISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARN 115 (154)
Q Consensus 79 s~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~ 115 (154)
..++.|++.|.+..|+++++.++++-+|.++..++++
T Consensus 124 ~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 160 (161)
T 3idb_B 124 AATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYES 160 (161)
T ss_dssp SSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC---
T ss_pred ccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHhc
Confidence 5578899999999999999999999999988776654
No 63
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=68.47 E-value=2.2 Score=31.03 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=34.6
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+|+++..|.+.+
T Consensus 80 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 118 (207)
T 2oz6_A 80 RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQM 118 (207)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHH
Confidence 456788999999999999999999999999998887765
No 64
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=68.09 E-value=2.2 Score=31.24 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.8
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..|.+.+
T Consensus 85 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 123 (216)
T 4ev0_A 85 RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALL 123 (216)
T ss_dssp CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHH
Confidence 456788999999999999999999999999999887765
No 65
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=67.93 E-value=2.2 Score=31.68 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=34.9
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+..|+++.+.+.++-+|+++..|.+.+
T Consensus 86 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 124 (213)
T 1o5l_A 86 FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV 124 (213)
T ss_dssp CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 466788999999999999999999999999998887765
No 66
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=66.43 E-value=2.5 Score=30.99 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=34.8
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..+.+.+
T Consensus 91 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l 129 (220)
T 3dv8_A 91 FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELM 129 (220)
T ss_dssp CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 456788999999999999999999999999999887665
No 67
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=66.17 E-value=2.6 Score=31.32 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=35.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...+..|++.|.+-.|+++.+.+.++-+|+++..+.+.+
T Consensus 92 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 130 (231)
T 3e97_A 92 RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEML 130 (231)
T ss_dssp CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 466788999999999999999999999999999887765
No 68
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=63.69 E-value=2.6 Score=31.13 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=34.7
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+|+++..+.+.+
T Consensus 96 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 134 (227)
T 3dkw_A 96 YVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKL 134 (227)
T ss_dssp CSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHH
T ss_pred CceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 456788999999999999999999999999999887765
No 69
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=63.33 E-value=2.4 Score=31.49 Aligned_cols=39 Identities=10% Similarity=-0.074 Sum_probs=34.9
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..|.+.+
T Consensus 78 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 116 (222)
T 1ft9_A 78 SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAIL 116 (222)
T ss_dssp SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 567788999999999999999999999999998887665
No 70
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=62.79 E-value=2.9 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=34.7
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..+.+.+
T Consensus 107 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 145 (232)
T 1zyb_A 107 YASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIV 145 (232)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHH
T ss_pred CceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHH
Confidence 466788999999999999999999999999999887765
No 71
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.41 E-value=2.3 Score=31.55 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=34.6
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...+..|++.|.+-.|+++.+.++++-+|+++..+.+.+
T Consensus 92 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 130 (227)
T 3d0s_A 92 RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVL 130 (227)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHH
T ss_pred ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 456788999999999999999999999999999887765
No 72
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=61.87 E-value=1.6 Score=35.60 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+..|+++++.++++-+|++++.+.+.+
T Consensus 307 ~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l 345 (355)
T 3beh_A 307 RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTA 345 (355)
T ss_dssp ---------------------------------------
T ss_pred cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 467888999999999999999999999999999887653
No 73
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=61.43 E-value=3.5 Score=30.62 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=34.7
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..+.+.+
T Consensus 96 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 134 (232)
T 2gau_A 96 CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKAL 134 (232)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 456788999999999999999999999999999887765
No 74
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=61.22 E-value=2.2 Score=29.26 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=24.5
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHh
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSF 112 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f 112 (154)
+..+..|++.|.+..|+++++.++++-+|.+.+.+
T Consensus 104 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 104 RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred cceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 45678899999999999999999999999887653
No 75
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=60.47 E-value=3 Score=30.85 Aligned_cols=39 Identities=8% Similarity=0.056 Sum_probs=34.8
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+|+++..+.+.+
T Consensus 82 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 120 (220)
T 2fmy_A 82 TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVL 120 (220)
T ss_dssp SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 567788999999999999999999999999998887665
No 76
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=60.14 E-value=3.1 Score=30.24 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=34.1
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+|+++..+.+.+
T Consensus 83 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (210)
T 3ryp_A 83 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121 (210)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 456778999999999999999999999999998876654
No 77
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=59.46 E-value=3.2 Score=32.01 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=34.3
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..|.+.+
T Consensus 133 ~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l 171 (260)
T 3kcc_A 133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 171 (260)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 356778999999999999999999999999999887665
No 78
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=58.86 E-value=4.1 Score=30.38 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=34.4
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...+..|++.|.+-.|+++.+.+++.-+|+++..+.+.+
T Consensus 97 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 135 (237)
T 3fx3_A 97 YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATT 135 (237)
T ss_dssp CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 356788999999999999999999999999999887665
No 79
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=58.17 E-value=4.6 Score=29.76 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=33.8
Q ss_pred ccccccceeeecceeecCcchHHHhhhh-----HHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFY-----QAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~y-----pef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+ |+++..+.+.+
T Consensus 98 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l 141 (230)
T 3iwz_A 98 REVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQL 141 (230)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHH
T ss_pred ceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 3566789999999999999999999988 99998877665
No 80
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=56.15 E-value=1.3 Score=30.16 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=29.2
Q ss_pred cccccceeeecceeecCcchHHHhhhhHHHHHH
Q psy12115 79 IISRIPLTYCDLHTIKRDRLLEVLDFYQAFANS 111 (154)
Q Consensus 79 s~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~ 111 (154)
..++.|++.|.+-.|+++++.+++.-+|++++.
T Consensus 103 ~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k 135 (137)
T 1wgp_A 103 TRTVKALTEVEAFALIADELKFVASQFRRSGPS 135 (137)
T ss_dssp SSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred eeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence 567889999999999999999999999987654
No 81
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=55.76 E-value=3.5 Score=32.67 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=34.0
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
++.++.|++.|.+-.|+++.+.+++ -+|+++..|.+.+
T Consensus 98 ~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~ 135 (333)
T 4ava_A 98 RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTA 135 (333)
T ss_dssp CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHH
T ss_pred ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHH
Confidence 4667889999999999999999999 7999999988775
No 82
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=55.22 E-value=4.2 Score=30.79 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=34.5
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.+.-+|+++..+.+.+
T Consensus 92 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 130 (250)
T 3e6c_C 92 NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNY 130 (250)
T ss_dssp CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 456788999999999999999999999999998887665
No 83
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=54.29 E-value=3.9 Score=29.47 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=34.4
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
+..+..|++.|.+-.|+++.+.+.++-+|+++..+.+.+
T Consensus 94 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 132 (194)
T 3dn7_A 94 ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVY 132 (194)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHH
Confidence 456788999999999999999999999999998877655
No 84
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=51.33 E-value=5.7 Score=30.06 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=33.1
Q ss_pred ccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 80 ISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 80 ~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
.+..|++.|.+-.|+++.+.+.++-+|+++..|.+.+
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 146 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGL 146 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 5677899999999999999999999999999887654
No 85
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=39.30 E-value=8.1 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=27.9
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHH
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANS 111 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~ 111 (154)
+..++.|++.|.+..|+++.+.+++.-+|.+...
T Consensus 119 ~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 119 RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred cceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 3567889999999999999999999888877654
No 86
>1dqi_A SOR, superoxide reductase; non-heme iron protein, immunoglobulin-like (IG) beta barrel fold, oxidoreductase; 1.70A {Pyrococcus furiosus} SCOP: b.1.13.1 PDB: 1do6_A 1dqk_A 2hvb_A
Probab=29.55 E-value=13 Score=27.42 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=13.5
Q ss_pred ceeEeEeeeeceEEeeh
Q psy12115 21 AANVRALTYCDLHTIKR 37 (154)
Q Consensus 21 sAsVrALTYCdL~~I~r 37 (154)
...|.|+.||.+|=|=.
T Consensus 102 ~~~l~A~~YCNlHGLW~ 118 (124)
T 1dqi_A 102 KGKLYALSYCNIHGLWE 118 (124)
T ss_dssp CEEEEEEEEETTTEEEE
T ss_pred CcEEEEEEEecccCCEE
Confidence 45799999999986643
No 87
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=25.11 E-value=34 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=30.7
Q ss_pred ccccce-eeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 80 ISRIPL-TYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 80 ~s~~~~-tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
.+..+. +.|.+-.|+++.+.+.+.-+|+++..|.+.+
T Consensus 84 ~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (238)
T 2bgc_A 84 YNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTL 121 (238)
T ss_dssp CEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 344555 4899999999999999999999998887765
No 88
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=22.36 E-value=34 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=26.7
Q ss_pred ccccccceeeecceeecCcchHHHhhhhHHHHHHhhhcc
Q psy12115 78 SIISRIPLTYCDLHTIKRDRLLEVLDFYQAFANSFARNL 116 (154)
Q Consensus 78 Ss~s~~~~tyCDlh~i~~~~L~~vl~~ypef~~~f~~~l 116 (154)
...++.|++.|.+-.|+++.+. |+++..|.+.+
T Consensus 61 ~~~~~~A~~~~~v~~i~~~~~~------p~~~~~~~~~l 93 (195)
T 3b02_A 61 YRYTAEAMTEAVVQGLEPRAMD------HEALHRVARNL 93 (195)
T ss_dssp CSSEEEESSSEEEEEECGGGCC------HHHHHHHHHHH
T ss_pred ceeEEEECCcEEEEEEcHHHcC------HHHHHHHHHHH
Confidence 4667889999999999999887 77777766554
Done!