RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12115
         (154 letters)



>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
           6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 137

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 1   MSKGDVFGDSFWKDNAVGQSAA-------NVRALTYCDLHTIKRDRLLEVLDFYQ 48
           + +GD  GD         +S +        V+ALT  +   +  D L  V   ++
Sbjct: 76  LKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130



 Score = 26.8 bits (58), Expect = 0.72
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 58  LLLTYNLRHRKRDSINLFVSSIISRIPLTYCDLHTIKRDRLLEVLDFYQ 106
            LLT+ L  +   ++     ++ +   LT  +   +  D L  V   ++
Sbjct: 85  ELLTWALDPKSGSNLPSSTRTVKA---LTEVEAFALIADELKFVASQFR 130


>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 136

 Score = 29.3 bits (65), Expect = 0.099
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 1   MSKGDVFGDSFWKDNAVGQSAANVRALTYCDLHTIKRDRLLEVL 44
           + +G  FG+           AA V+A T   L  I RD    +L
Sbjct: 84  VGEGGSFGELALIYG--TPRAATVKAKTNVKLWGIDRDSYRRIL 125


>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 136

 Score = 27.0 bits (59), Expect = 0.63
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 20  SAANVRALTYCDLHTIKRDRLLEVLDFYQAFA 51
            AA + A +   L  + R     ++    A  
Sbjct: 101 RAATITATSPGALWGLDRVTFRRIIVKNNAKK 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 541,006
Number of extensions: 21973
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.8 bits)