Query psy12116
Match_columns 114
No_of_seqs 118 out of 1033
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:08:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01387 MYSc_type_XV Myosin mo 100.0 8.7E-35 1.9E-39 247.7 8.2 99 2-100 355-453 (677)
2 PTZ00014 myosin-A; Provisional 100.0 2.5E-34 5.4E-39 248.7 8.0 93 9-101 463-555 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 2.4E-34 5.2E-39 245.0 7.5 94 8-101 365-458 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 3.9E-34 8.5E-39 243.5 8.1 94 8-101 362-455 (671)
5 cd01382 MYSc_type_VI Myosin mo 100.0 4E-34 8.6E-39 244.9 8.1 94 7-100 396-489 (717)
6 cd01384 MYSc_type_XI Myosin mo 100.0 4.6E-34 9.9E-39 243.2 8.3 93 10-102 369-461 (674)
7 cd01379 MYSc_type_III Myosin m 100.0 6.2E-34 1.4E-38 241.7 7.6 94 8-101 373-466 (653)
8 cd01385 MYSc_type_IX Myosin mo 100.0 5.7E-34 1.2E-38 243.2 7.4 94 8-101 376-470 (692)
9 cd01377 MYSc_type_II Myosin mo 100.0 2.1E-33 4.5E-38 239.8 8.6 92 9-100 375-467 (693)
10 cd01378 MYSc_type_I Myosin mot 100.0 2E-33 4.4E-38 239.3 8.0 94 8-101 366-461 (674)
11 COG5022 Myosin heavy chain [Cy 100.0 2.7E-33 5.8E-38 248.2 6.8 95 8-102 428-523 (1463)
12 cd01380 MYSc_type_V Myosin mot 100.0 6.2E-33 1.3E-37 236.8 7.9 92 9-101 369-460 (691)
13 smart00242 MYSc Myosin. Large 100.0 1.2E-32 2.6E-37 234.5 7.6 95 7-101 368-462 (677)
14 cd00124 MYSc Myosin motor doma 100.0 5E-32 1.1E-36 230.8 7.8 97 7-103 361-457 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 2E-31 4.4E-36 229.5 7.8 94 8-101 373-487 (767)
16 PF00063 Myosin_head: Myosin h 100.0 3.7E-31 8E-36 225.0 6.5 94 8-101 364-458 (689)
17 KOG0164|consensus 100.0 1.5E-29 3.2E-34 214.0 5.6 97 2-99 369-467 (1001)
18 KOG0161|consensus 99.9 2.9E-28 6.3E-33 222.3 5.3 92 10-102 450-542 (1930)
19 KOG0163|consensus 99.9 1.2E-27 2.6E-32 203.5 6.5 92 10-101 453-544 (1259)
20 KOG0160|consensus 99.9 1.2E-26 2.6E-31 200.4 5.7 95 10-105 370-464 (862)
21 KOG0162|consensus 99.9 1.3E-25 2.8E-30 190.7 4.7 93 6-98 381-474 (1106)
22 KOG4229|consensus 99.9 5.9E-25 1.3E-29 193.4 4.4 93 8-100 427-519 (1062)
23 KOG2422|consensus 44.3 7.5 0.00016 34.0 0.0 15 96-110 87-101 (665)
24 KOG3987|consensus 40.1 57 0.0012 25.5 4.2 78 3-89 107-191 (288)
25 PF15002 ERK-JNK_inhib: ERK an 33.5 29 0.00063 26.3 1.7 9 70-78 145-153 (207)
26 TIGR00869 sec62 protein transl 32.8 21 0.00045 27.6 0.8 11 83-93 185-195 (232)
27 PF10278 Med19: Mediator of RN 32.5 20 0.00044 26.6 0.7 15 67-81 60-74 (178)
28 PF06122 TraH: Conjugative rel 21.8 43 0.00093 27.0 0.9 30 6-35 51-82 (361)
29 KOG3045|consensus 20.4 37 0.00081 27.2 0.2 10 96-105 31-40 (325)
No 1
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=8.7e-35 Score=247.70 Aligned_cols=99 Identities=45% Similarity=0.591 Sum_probs=92.8
Q ss_pred CCCCCCCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCC
Q psy12116 2 LPRWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 81 (114)
Q Consensus 2 ~~~~~~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~ 81 (114)
+|.-...++.+|||||||.|+.|+|||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||+++|.
T Consensus 355 ~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~ 434 (677)
T cd01387 355 SPTQDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPY 434 (677)
T ss_pred CCCCCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCC
Confidence 34444555777799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhccccchhHH
Q psy12116 82 GLLCVLDDQAKKNKNVVKK 100 (114)
Q Consensus 82 GLlslLDEec~~Pk~td~~ 100 (114)
|||+||||||++|++||+.
T Consensus 435 Gil~lLdee~~~p~~td~~ 453 (677)
T cd01387 435 GILRILDDQCCFPQATDHT 453 (677)
T ss_pred chHHHHHHHhcCCCCchHH
Confidence 9999999999999999986
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.5e-34 Score=248.69 Aligned_cols=93 Identities=33% Similarity=0.369 Sum_probs=89.5
Q ss_pred cceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccch
Q psy12116 9 QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 88 (114)
Q Consensus 9 ~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslLD 88 (114)
.+++|||||||.|+.|||||||||||||+||++|++++|..||++|..|||+|..++|.||++|||||+++|.|||+|||
T Consensus 463 ~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLD 542 (821)
T PTZ00014 463 FIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILE 542 (821)
T ss_pred eEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHH
Confidence 46666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhHHH
Q psy12116 89 DQAKKNKNVVKKK 101 (114)
Q Consensus 89 Eec~~Pk~td~~~ 101 (114)
|||++|++||+.=
T Consensus 543 Eec~~p~~tD~~f 555 (821)
T PTZ00014 543 DQCLAPGGTDEKF 555 (821)
T ss_pred HHhCCCCCCHHHH
Confidence 9999999999864
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2.4e-34 Score=244.99 Aligned_cols=94 Identities=45% Similarity=0.686 Sum_probs=89.8
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
.++.+|||||||.|+.|+|||||||||||+||++|++++|..|+++|..|||+|..++|.||++|||||+++|.|||++|
T Consensus 365 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lL 444 (677)
T cd01383 365 RSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLL 444 (677)
T ss_pred ceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHh
Confidence 34666699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhHHH
Q psy12116 88 DDQAKKNKNVVKKK 101 (114)
Q Consensus 88 DEec~~Pk~td~~~ 101 (114)
||||++|++||+.=
T Consensus 445 dee~~~p~~tD~~f 458 (677)
T cd01383 445 DEESTFPNATDLTF 458 (677)
T ss_pred HHHHcCCCCCHHHH
Confidence 99999999999754
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.9e-34 Score=243.53 Aligned_cols=94 Identities=44% Similarity=0.633 Sum_probs=89.9
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
..+.+|||||||.|+.|+|||||||||||+||++|++++|..++++|..|||.|..++|.||++|||||+++|.|||++|
T Consensus 362 ~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lL 441 (671)
T cd01381 362 NSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLI 441 (671)
T ss_pred ceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceec
Confidence 34666699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhHHH
Q psy12116 88 DDQAKKNKNVVKKK 101 (114)
Q Consensus 88 DEec~~Pk~td~~~ 101 (114)
||||++|++||+.=
T Consensus 442 Dee~~~p~~td~~f 455 (671)
T cd01381 442 DEESKFPKGTDQTM 455 (671)
T ss_pred hHhhcCCCCCHHHH
Confidence 99999999999863
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=4e-34 Score=244.88 Aligned_cols=94 Identities=36% Similarity=0.583 Sum_probs=89.8
Q ss_pred CCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCccccc
Q psy12116 7 SGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 7 ~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlsl 86 (114)
+.++.+|||||||.|+.|+|||||||||||+||++|++++|..|+++|..|||+|.+++|.||++|||||+++|.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 34466669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhHH
Q psy12116 87 LDDQAKKNKNVVKK 100 (114)
Q Consensus 87 LDEec~~Pk~td~~ 100 (114)
|||||++|++||+.
T Consensus 476 LDee~~~p~~tD~~ 489 (717)
T cd01382 476 LDEENRLPQPSDQH 489 (717)
T ss_pred hHHHhcCCCCCHHH
Confidence 99999999999985
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=4.6e-34 Score=243.20 Aligned_cols=93 Identities=45% Similarity=0.618 Sum_probs=89.0
Q ss_pred ceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccchh
Q psy12116 10 DARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 89 (114)
Q Consensus 10 ~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslLDE 89 (114)
..+|||||||.|+.|+|||||||||||+||++|++++|..|+++|..|||+|..++|.||++|||||+++|.|||++|||
T Consensus 369 IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLde 448 (674)
T cd01384 369 IGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDE 448 (674)
T ss_pred EEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHH
Confidence 55559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhHHHH
Q psy12116 90 QAKKNKNVVKKKK 102 (114)
Q Consensus 90 ec~~Pk~td~~~~ 102 (114)
||++|++||+.=-
T Consensus 449 e~~~p~~td~~f~ 461 (674)
T cd01384 449 ACMFPKSTHETFA 461 (674)
T ss_pred HHcCCCCCHHHHH
Confidence 9999999998643
No 7
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.2e-34 Score=241.70 Aligned_cols=94 Identities=41% Similarity=0.603 Sum_probs=89.6
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
.++.+|||||||.|+.|+|||||||||||+||++|++++|..|+++|..|||+|..++|.||++|||||+++|.|||++|
T Consensus 373 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lL 452 (653)
T cd01379 373 LNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALL 452 (653)
T ss_pred ceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHH
Confidence 34666699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhHHH
Q psy12116 88 DDQAKKNKNVVKKK 101 (114)
Q Consensus 88 DEec~~Pk~td~~~ 101 (114)
||||++|++||+.=
T Consensus 453 dee~~~~~~td~~~ 466 (653)
T cd01379 453 DEESRFPQATDQTL 466 (653)
T ss_pred HHHhcCCCCCHHHH
Confidence 99999999999753
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=5.7e-34 Score=243.17 Aligned_cols=94 Identities=49% Similarity=0.766 Sum_probs=89.7
Q ss_pred CcceEEEEccccccCC-CchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCccccc
Q psy12116 8 GQDARLVIRRAWVRSQ-PSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~-NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlsl 86 (114)
..+.+|||||||.|+. |+|||||||||||+||++|++++|..++++|..|||+|..++|.||++||+||+++|.|||++
T Consensus 376 ~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~l 455 (692)
T cd01385 376 LSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYL 455 (692)
T ss_pred eEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 3466669999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhHHH
Q psy12116 87 LDDQAKKNKNVVKKK 101 (114)
Q Consensus 87 LDEec~~Pk~td~~~ 101 (114)
|||||++|++||+.=
T Consensus 456 Ldee~~~p~~td~~~ 470 (692)
T cd01385 456 LDEESNFPHATSQTL 470 (692)
T ss_pred hHHHhcCCCCCHHHH
Confidence 999999999999864
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=2.1e-33 Score=239.76 Aligned_cols=92 Identities=43% Similarity=0.673 Sum_probs=88.1
Q ss_pred cceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcCCCcccccc
Q psy12116 9 QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 9 ~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~kP~GLlslL 87 (114)
++.+|||||||.|+.|+|||||||||||+||++|++++|..|+++|..|||+|..++| .||++||+||+++|.|||++|
T Consensus 375 ~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lL 454 (693)
T cd01377 375 FIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLL 454 (693)
T ss_pred eEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhh
Confidence 3556699999999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred hhhhccccchhHH
Q psy12116 88 DDQAKKNKNVVKK 100 (114)
Q Consensus 88 DEec~~Pk~td~~ 100 (114)
||||++|++||+.
T Consensus 455 dee~~~~~~tD~~ 467 (693)
T cd01377 455 DEECVFPKATDKT 467 (693)
T ss_pred hHHhcCCCCCHHH
Confidence 9999999999985
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2e-33 Score=239.26 Aligned_cols=94 Identities=37% Similarity=0.604 Sum_probs=89.4
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhc-CCCccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCV 86 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~-kP~GLlsl 86 (114)
.++.+|||||||.|+.|+|||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||++ +|.|||++
T Consensus 366 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~l 445 (674)
T cd01378 366 KVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSI 445 (674)
T ss_pred ceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHH
Confidence 34666699999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred chhhhccc-cchhHHH
Q psy12116 87 LDDQAKKN-KNVVKKK 101 (114)
Q Consensus 87 LDEec~~P-k~td~~~ 101 (114)
|||||++| ++||+.=
T Consensus 446 Ldee~~~p~~~tD~~~ 461 (674)
T cd01378 446 LDDVCATPHEGTDQTF 461 (674)
T ss_pred HHHHHcCCCCCChHHH
Confidence 99999999 9999864
No 11
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.98 E-value=2.7e-33 Score=248.16 Aligned_cols=95 Identities=43% Similarity=0.703 Sum_probs=89.6
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhc-CCCccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCV 86 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~-kP~GLlsl 86 (114)
...++|||||||-|+.|||||||||||||+||+.|++++|..||++|..|||.|.+|+|.||++|+|||+. .|.|||++
T Consensus 428 ~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlsl 507 (1463)
T COG5022 428 NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSL 507 (1463)
T ss_pred cceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhh
Confidence 34677799999999999999999999999999999999999999999999999999999999999999996 48899999
Q ss_pred chhhhccccchhHHHH
Q psy12116 87 LDDQAKKNKNVVKKKK 102 (114)
Q Consensus 87 LDEec~~Pk~td~~~~ 102 (114)
|||||..|.|||+.--
T Consensus 508 LDEE~~~p~atd~s~~ 523 (1463)
T COG5022 508 LDEECVMPHATDESFT 523 (1463)
T ss_pred hcHHhcCCCCCchHHH
Confidence 9999999999998643
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.98 E-value=6.2e-33 Score=236.80 Aligned_cols=92 Identities=47% Similarity=0.695 Sum_probs=87.6
Q ss_pred cceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccch
Q psy12116 9 QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 88 (114)
Q Consensus 9 ~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslLD 88 (114)
++.+|||||||.|+.|+|||||||||||+||++|++++|..|+++|..|||+|..++|.||++|||||++ |.|||++||
T Consensus 369 ~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLd 447 (691)
T cd01380 369 FIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLD 447 (691)
T ss_pred eEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhH
Confidence 4556699999999999999999999999999999999999999999999999999999999999999996 699999999
Q ss_pred hhhccccchhHHH
Q psy12116 89 DQAKKNKNVVKKK 101 (114)
Q Consensus 89 Eec~~Pk~td~~~ 101 (114)
|||++|++||+.=
T Consensus 448 ee~~~p~~td~~f 460 (691)
T cd01380 448 EECRLPKGSDESW 460 (691)
T ss_pred HhhcCCCCChHHH
Confidence 9999999999853
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.97 E-value=1.2e-32 Score=234.54 Aligned_cols=95 Identities=47% Similarity=0.737 Sum_probs=90.1
Q ss_pred CCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCccccc
Q psy12116 7 SGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 7 ~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlsl 86 (114)
..++.+|||||||.++.|+|||||||||||+||++|++++|..++++|..|||+|..+.|.||++||+||+++|.|||++
T Consensus 368 ~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~l 447 (677)
T smart00242 368 TYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSL 447 (677)
T ss_pred ceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHH
Confidence 34466669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhHHH
Q psy12116 87 LDDQAKKNKNVVKKK 101 (114)
Q Consensus 87 LDEec~~Pk~td~~~ 101 (114)
|||||++|++||+.=
T Consensus 448 Ldee~~~~~~td~~~ 462 (677)
T smart00242 448 LDEECRFPKATDQTF 462 (677)
T ss_pred HHHHhcCCCCCHHHH
Confidence 999999999999753
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.97 E-value=5e-32 Score=230.77 Aligned_cols=97 Identities=47% Similarity=0.693 Sum_probs=91.1
Q ss_pred CCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCccccc
Q psy12116 7 SGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 7 ~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlsl 86 (114)
..++.+|||||||.++.|+|||||||||||+||++|++++|..++++|..|||.|..+.|.||++|+|||+++|.|||++
T Consensus 361 ~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~l 440 (679)
T cd00124 361 SLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSL 440 (679)
T ss_pred CceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHH
Confidence 34466669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhHHHHH
Q psy12116 87 LDDQAKKNKNVVKKKKK 103 (114)
Q Consensus 87 LDEec~~Pk~td~~~~~ 103 (114)
|||||++|++||+.=-.
T Consensus 441 Ldee~~~~~~~d~~~~~ 457 (679)
T cd00124 441 LDEECLFPKGTDETFLE 457 (679)
T ss_pred HHHHhCCCCCCHHHHHH
Confidence 99999999999986433
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.97 E-value=2e-31 Score=229.47 Aligned_cols=94 Identities=26% Similarity=0.337 Sum_probs=85.7
Q ss_pred CcceEEEEccccccCC------CchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcCC
Q psy12116 8 GQDARLVIRRAWVRSQ------PSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP 80 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~------NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~kP 80 (114)
.++++|||||||.|++ |+|||||||||||+||++|++++|..|+++|..|||+|+.+.+ .||.+|++||+++|
T Consensus 373 ~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p 452 (767)
T cd01386 373 ASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAP 452 (767)
T ss_pred cEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhccc
Confidence 4466679999999974 8999999999999999999999999999999999999986655 79999999999865
Q ss_pred --------------CcccccchhhhccccchhHHH
Q psy12116 81 --------------NGLLCVLDDQAKKNKNVVKKK 101 (114)
Q Consensus 81 --------------~GLlslLDEec~~Pk~td~~~ 101 (114)
.|||++|||||++|++||+.=
T Consensus 453 ~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f 487 (767)
T cd01386 453 QQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTF 487 (767)
T ss_pred ccccccchhhccCCCchhhhhhHhhcCCCCcHHHH
Confidence 599999999999999999864
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=3.7e-31 Score=224.96 Aligned_cols=94 Identities=48% Similarity=0.742 Sum_probs=82.7
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcCCCccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~kP~GLlsl 86 (114)
..+.+|||||||.+..|+|||||||||||+||++|++++|..++++|..|||.|+.++| .||.+|||||+++|.|||++
T Consensus 364 ~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~l 443 (689)
T PF00063_consen 364 SSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSL 443 (689)
T ss_dssp EEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHH
T ss_pred ccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred chhhhccccchhHHH
Q psy12116 87 LDDQAKKNKNVVKKK 101 (114)
Q Consensus 87 LDEec~~Pk~td~~~ 101 (114)
|||||++|++||+.=
T Consensus 444 Ldee~~~~~~sd~~f 458 (689)
T PF00063_consen 444 LDEECLLPRGSDESF 458 (689)
T ss_dssp HHHHCTSTTS-HHHH
T ss_pred hhhhhhcccchhhHH
Confidence 999999999999864
No 17
>KOG0164|consensus
Probab=99.96 E-value=1.5e-29 Score=213.98 Aligned_cols=97 Identities=37% Similarity=0.559 Sum_probs=89.3
Q ss_pred CCCCCCCcce-EEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCC
Q psy12116 2 LPRWRSGQDA-RLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 80 (114)
Q Consensus 2 ~~~~~~~~~~-~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP 80 (114)
+++++ .+|+ +|||||||.|+.|||||||||||||+||+.|++.++..||+||.+|||.|.+|+|.+|.-++||++.+.
T Consensus 369 ~~~~~-~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~ 447 (1001)
T KOG0164|consen 369 TLRKG-NTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPH 447 (1001)
T ss_pred ccccC-ceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCc
Confidence 45666 4554 559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccchhhhcccc-chhH
Q psy12116 81 NGLLCVLDDQAKKNK-NVVK 99 (114)
Q Consensus 81 ~GLlslLDEec~~Pk-~td~ 99 (114)
.|||+||||||+.|. .||.
T Consensus 448 ~GIlailDe~Cl~~G~vtD~ 467 (1001)
T KOG0164|consen 448 KGILAILDEACLRPGTVTDE 467 (1001)
T ss_pred cchhhhhhHHhcCCCccchH
Confidence 999999999999998 5554
No 18
>KOG0161|consensus
Probab=99.94 E-value=2.9e-28 Score=222.33 Aligned_cols=92 Identities=43% Similarity=0.665 Sum_probs=87.0
Q ss_pred ceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcCCCcccccch
Q psy12116 10 DARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 88 (114)
Q Consensus 10 ~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~kP~GLlslLD 88 (114)
.++|||-|||.|+.||||||||||+||+||++|++++|..++++|..|||.|.+|+| .|-+||++||+. |+||+++||
T Consensus 450 IgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLd 528 (1930)
T KOG0161|consen 450 IGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLD 528 (1930)
T ss_pred ceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHH
Confidence 455699999999999999999999999999999999999999999999999999999 899999999995 889999999
Q ss_pred hhhccccchhHHHH
Q psy12116 89 DQAKKNKNVVKKKK 102 (114)
Q Consensus 89 Eec~~Pk~td~~~~ 102 (114)
|||++|+|||.-=.
T Consensus 529 EEc~~PkAtd~tf~ 542 (1930)
T KOG0161|consen 529 EECVVPKATDKTFL 542 (1930)
T ss_pred HHHhcCCCccchHH
Confidence 99999999997543
No 19
>KOG0163|consensus
Probab=99.94 E-value=1.2e-27 Score=203.54 Aligned_cols=92 Identities=42% Similarity=0.634 Sum_probs=89.2
Q ss_pred ceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccchh
Q psy12116 10 DARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 89 (114)
Q Consensus 10 ~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslLDE 89 (114)
+++|||-|||.|.+|||||||||||||+||++|+++++..||+.|..||+.++.|.|.||++||+||+.+..|||.||||
T Consensus 453 iGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDE 532 (1259)
T KOG0163|consen 453 IGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDE 532 (1259)
T ss_pred eEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhHHH
Q psy12116 90 QAKKNKNVVKKK 101 (114)
Q Consensus 90 ec~~Pk~td~~~ 101 (114)
|+++|+++++-=
T Consensus 533 EaklP~~s~qhF 544 (1259)
T KOG0163|consen 533 EAKLPKPSYQHF 544 (1259)
T ss_pred hccCCCcchHHH
Confidence 999999998753
No 20
>KOG0160|consensus
Probab=99.93 E-value=1.2e-26 Score=200.45 Aligned_cols=95 Identities=48% Similarity=0.686 Sum_probs=90.5
Q ss_pred ceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccchh
Q psy12116 10 DARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 89 (114)
Q Consensus 10 ~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslLDE 89 (114)
..+|||||||.|+.|+||||||||+||+||+.|++|+|..++++|..|+|+|..++|.||++|+++|+. |.|+++||||
T Consensus 370 igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde 448 (862)
T KOG0160|consen 370 IGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDE 448 (862)
T ss_pred eeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccch
Confidence 666799999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hhccccchhHHHHHHH
Q psy12116 90 QAKKNKNVVKKKKKKK 105 (114)
Q Consensus 90 ec~~Pk~td~~~~~~~ 105 (114)
||++|.+||+-.+.|=
T Consensus 449 ~c~lp~~t~~~~a~KL 464 (862)
T KOG0160|consen 449 ECMLPKGTDETLAQKL 464 (862)
T ss_pred hccCCCCCcchHHHHH
Confidence 9999999998776653
No 21
>KOG0162|consensus
Probab=99.91 E-value=1.3e-25 Score=190.65 Aligned_cols=93 Identities=33% Similarity=0.545 Sum_probs=86.2
Q ss_pred CCCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhc-CCCccc
Q psy12116 6 RSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL 84 (114)
Q Consensus 6 ~~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~-kP~GLl 84 (114)
...++++|||||||.|+.|+||||||||.||+||+.|++.++..||++|.+|||.|.+|.|.||.-++|||+. +|.|||
T Consensus 381 ~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGim 460 (1106)
T KOG0162|consen 381 EEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIM 460 (1106)
T ss_pred cccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHH
Confidence 3456888899999999999999999999999999999999999999999999999999999999999999997 689999
Q ss_pred ccchhhhccccchh
Q psy12116 85 CVLDDQAKKNKNVV 98 (114)
Q Consensus 85 slLDEec~~Pk~td 98 (114)
++|||.|.-.-|+.
T Consensus 461 s~ldD~~At~Ha~~ 474 (1106)
T KOG0162|consen 461 SALDDVCATAHADS 474 (1106)
T ss_pred HHHHHHHHHhcccc
Confidence 99999998755443
No 22
>KOG4229|consensus
Probab=99.90 E-value=5.9e-25 Score=193.42 Aligned_cols=93 Identities=47% Similarity=0.719 Sum_probs=89.0
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
...++|||||||.+..|+|||+|||+|||+||.+|++++|..|+++|..|+|.|..+.|.||..|+++|..+|+|||.+|
T Consensus 427 ~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~li 506 (1062)
T KOG4229|consen 427 LSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLI 506 (1062)
T ss_pred ceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhee
Confidence 44566699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhHH
Q psy12116 88 DDQAKKNKNVVKK 100 (114)
Q Consensus 88 DEec~~Pk~td~~ 100 (114)
|||+.||++||.-
T Consensus 507 Dees~fP~~td~t 519 (1062)
T KOG4229|consen 507 DEESRFPKATDQT 519 (1062)
T ss_pred cccCcCCchHHHH
Confidence 9999999999964
No 23
>KOG2422|consensus
Probab=44.35 E-value=7.5 Score=34.01 Aligned_cols=15 Identities=67% Similarity=0.749 Sum_probs=5.7
Q ss_pred chhHHHHHHHHHHhh
Q psy12116 96 NVVKKKKKKKKKKKK 110 (114)
Q Consensus 96 ~td~~~~~~~~~~~~ 110 (114)
+.-.|+|||+|+|+|
T Consensus 87 ~sk~k~KKK~krkkK 101 (665)
T KOG2422|consen 87 SSKNKKKKKKKRKKK 101 (665)
T ss_pred hhccccchhhhhccc
Confidence 333333333333333
No 24
>KOG3987|consensus
Probab=40.06 E-value=57 Score=25.48 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=43.7
Q ss_pred CCCCCCcceEEEEccccccC-----CCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcC-ceeeeccc-CChHHHHHH
Q psy12116 3 PRWRSGQDARLVIRRAWVRS-----QPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG-IRWRHIEF-SDNTLCLQL 75 (114)
Q Consensus 3 ~~~~~~~~~~ld~~gfe~~~-----~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~Eg-I~~~~i~~-~dn~~~ldL 75 (114)
|.|+++.+-.||+ |.+-.+ .+.||.. ||.|-.-....+ .....|.-.+ ++|...++ .|.-.|+.+
T Consensus 107 p~w~~~~~~lLDl-GAGdGeit~~m~p~feev---yATElS~tMr~r----L~kk~ynVl~~~ew~~t~~k~dli~clNl 178 (288)
T KOG3987|consen 107 PAWGQEPVTLLDL-GAGDGEITLRMAPTFEEV---YATELSWTMRDR----LKKKNYNVLTEIEWLQTDVKLDLILCLNL 178 (288)
T ss_pred CccCCCCeeEEec-cCCCcchhhhhcchHHHH---HHHHhhHHHHHH----HhhcCCceeeehhhhhcCceeehHHHHHH
Confidence 7899988888887 555443 3456664 444432222111 1223443333 35766677 788899999
Q ss_pred HhcCCCcccccchh
Q psy12116 76 VEGKPNGLLCVLDD 89 (114)
Q Consensus 76 i~~kP~GLlslLDE 89 (114)
+++ ...-+.+|.|
T Consensus 179 LDR-c~~p~kLL~D 191 (288)
T KOG3987|consen 179 LDR-CFDPFKLLED 191 (288)
T ss_pred HHh-hcChHHHHHH
Confidence 885 2333344444
No 25
>PF15002 ERK-JNK_inhib: ERK and JNK pathways, inhibitor
Probab=33.47 E-value=29 Score=26.29 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q psy12116 70 TLCLQLVEG 78 (114)
Q Consensus 70 ~~~ldLi~~ 78 (114)
...|.|+.+
T Consensus 145 ~~lL~L~~Q 153 (207)
T PF15002_consen 145 EKLLHLMAQ 153 (207)
T ss_pred HHHHHHHHH
Confidence 445555543
No 26
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=32.77 E-value=21 Score=27.59 Aligned_cols=11 Identities=9% Similarity=-0.140 Sum_probs=5.0
Q ss_pred ccccchhhhcc
Q psy12116 83 LLCVLDDQAKK 93 (114)
Q Consensus 83 LlslLDEec~~ 93 (114)
||.-|-|+|-|
T Consensus 185 lfPNLfeD~Gf 195 (232)
T TIGR00869 185 IFPNLFADVGF 195 (232)
T ss_pred eecchhcccCc
Confidence 44444444544
No 27
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.45 E-value=20 Score=26.59 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=10.0
Q ss_pred CChHHHHHHHhcCCC
Q psy12116 67 SDNTLCLQLVEGKPN 81 (114)
Q Consensus 67 ~dn~~~ldLi~~kP~ 81 (114)
.|++..-.||+++|.
T Consensus 60 ~d~ssLrslIekPPi 74 (178)
T PF10278_consen 60 QDNSSLRSLIEKPPI 74 (178)
T ss_pred cCcchHHHHhhCCCC
Confidence 366777777777663
No 28
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=21.78 E-value=43 Score=27.02 Aligned_cols=30 Identities=13% Similarity=-0.045 Sum_probs=19.9
Q ss_pred CCCcceEEEEc--cccccCCCchhhhhhhhhh
Q psy12116 6 RSGQDARLVIR--RAWVRSQPSFEQLCINYAN 35 (114)
Q Consensus 6 ~~~~~~~ld~~--gfe~~~~NsfeQlcIN~an 35 (114)
-++.+.|+|+| ||-+-...-|.|+.=|.++
T Consensus 51 ~~aGCGGID~f~GsFSfIn~dqlVq~lr~Ia~ 82 (361)
T PF06122_consen 51 ISAGCGGIDLFMGSFSFINSDQLVQMLRNIAS 82 (361)
T ss_pred ccCCCCceeccccccccCCHHHHHHHHHHHHH
Confidence 35679999999 6666555556666555443
No 29
>KOG3045|consensus
Probab=20.42 E-value=37 Score=27.24 Aligned_cols=10 Identities=50% Similarity=0.584 Sum_probs=3.8
Q ss_pred chhHHHHHHH
Q psy12116 96 NVVKKKKKKK 105 (114)
Q Consensus 96 ~td~~~~~~~ 105 (114)
-|++.+|+||
T Consensus 31 k~~~~kKkkK 40 (325)
T KOG3045|consen 31 KTKEEKKKKK 40 (325)
T ss_pred ccchhhhhhh
Confidence 3333333333
Done!