Query psy12116
Match_columns 114
No_of_seqs 118 out of 1033
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:09:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 1.5E-35 5.2E-40 254.3 8.0 94 8-101 446-539 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 2.6E-35 9E-40 250.3 7.1 95 8-102 380-474 (697)
3 4anj_A Unconventional myosin-V 100.0 5.5E-35 1.9E-39 256.6 8.0 95 7-101 449-543 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1.6E-34 5.4E-39 248.3 7.7 93 8-101 431-523 (795)
5 1w9i_A Myosin II heavy chain; 100.0 2E-34 6.9E-39 246.9 7.7 97 8-104 448-546 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 2.3E-34 7.9E-39 246.9 7.1 93 9-102 456-549 (783)
7 1kk8_A Myosin heavy chain, str 100.0 2.9E-34 1E-38 247.7 6.9 95 8-103 454-549 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 8.4E-34 2.9E-38 249.8 7.5 92 9-101 432-523 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.1E-33 3.8E-38 247.4 7.2 96 8-103 427-525 (995)
10 1g8x_A Myosin II heavy chain f 100.0 1.9E-33 6.6E-38 246.2 7.5 96 7-102 447-544 (1010)
11 1i84_S Smooth muscle myosin he 100.0 2.4E-33 8.1E-38 248.0 6.3 94 9-102 459-555 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 53.4 4 0.00014 23.7 0.7 27 67-93 24-50 (53)
13 1mof_A Moloney murine leukemia 48.0 5.1 0.00017 23.4 0.5 27 67-93 26-52 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=1.5e-35 Score=254.29 Aligned_cols=94 Identities=34% Similarity=0.527 Sum_probs=89.6
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
..+++|||||||.|+.|+|||||||||||+||++|++++|..||+||..|||+|..++|.||++|+|||+++|+|||+||
T Consensus 446 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslL 525 (784)
T 2v26_A 446 YFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDIL 525 (784)
T ss_dssp EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHH
T ss_pred ceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHH
Confidence 34566699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhHHH
Q psy12116 88 DDQAKKNKNVVKKK 101 (114)
Q Consensus 88 DEec~~Pk~td~~~ 101 (114)
||||++|++||+.=
T Consensus 526 DEe~~~p~~tD~~f 539 (784)
T 2v26_A 526 DEENRLPQPSDQHF 539 (784)
T ss_dssp HHHHHSSSCCHHHH
T ss_pred HHHhcCCCCChHHH
Confidence 99999999999753
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=2.6e-35 Score=250.32 Aligned_cols=95 Identities=38% Similarity=0.498 Sum_probs=90.1
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
..+++|||||||.|+.|+|||||||||||+||++|++++|..||+||..|||+|..++|.||++|+|||+++|.|||+||
T Consensus 380 ~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslL 459 (697)
T 1lkx_A 380 PVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLL 459 (697)
T ss_dssp CEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHH
T ss_pred eeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhh
Confidence 34566699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhHHHH
Q psy12116 88 DDQAKKNKNVVKKKK 102 (114)
Q Consensus 88 DEec~~Pk~td~~~~ 102 (114)
||||++|++||+.=-
T Consensus 460 DEec~~p~~tD~~f~ 474 (697)
T 1lkx_A 460 DEACLIAKSTDQTFL 474 (697)
T ss_dssp HHHHHSTTCCHHHHH
T ss_pred HHhhCCCCCChHHHH
Confidence 999999999997643
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=5.5e-35 Score=256.56 Aligned_cols=95 Identities=35% Similarity=0.529 Sum_probs=90.3
Q ss_pred CCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCccccc
Q psy12116 7 SGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 7 ~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlsl 86 (114)
+..+++|||||||.|+.|||||||||||||+||++|++++|..||++|..|||+|..++|.||++|||||+++|.|||+|
T Consensus 449 ~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~l 528 (1052)
T 4anj_A 449 SYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDI 528 (1052)
T ss_dssp SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHH
T ss_pred cceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHH
Confidence 34466679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchhHHH
Q psy12116 87 LDDQAKKNKNVVKKK 101 (114)
Q Consensus 87 LDEec~~Pk~td~~~ 101 (114)
|||||++|++||+.=
T Consensus 529 LDEe~~~p~~tD~~f 543 (1052)
T 4anj_A 529 LDEENRLPQPSDQHF 543 (1052)
T ss_dssp HHHHHHSSSCCHHHH
T ss_pred HHHHhcCCCCcHHHH
Confidence 999999999999753
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.6e-34 Score=248.29 Aligned_cols=93 Identities=46% Similarity=0.631 Sum_probs=87.9
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL 87 (114)
..+++|||||||.|+.|+|||||||||||+||++|++++|..||+||..|||+|..++|.||++|||||+++ .|||+||
T Consensus 431 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslL 509 (795)
T 1w7j_A 431 SFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLL 509 (795)
T ss_dssp EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHH
T ss_pred ceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhh
Confidence 345666999999999999999999999999999999999999999999999999999999999999999986 9999999
Q ss_pred hhhhccccchhHHH
Q psy12116 88 DDQAKKNKNVVKKK 101 (114)
Q Consensus 88 DEec~~Pk~td~~~ 101 (114)
||||++|++||+.=
T Consensus 510 DEec~~p~~tD~~f 523 (795)
T 1w7j_A 510 DEECKMPKGSDDTW 523 (795)
T ss_dssp HHHHTSTTCCHHHH
T ss_pred hhhccCCCCChHHH
Confidence 99999999999653
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2e-34 Score=246.89 Aligned_cols=97 Identities=41% Similarity=0.635 Sum_probs=90.0
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcC-CCcccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLC 85 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~k-P~GLls 85 (114)
..+++|||||||.|+.|+|||||||||||+||++|++++|..||++|..|||+|..++| .||++|||||+++ |+|||+
T Consensus 448 ~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~Gils 527 (770)
T 1w9i_A 448 YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILA 527 (770)
T ss_dssp EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHH
T ss_pred CeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhh
Confidence 34666699999999999999999999999999999999999999999999999999999 5999999999984 999999
Q ss_pred cchhhhccccchhHHHHHH
Q psy12116 86 VLDDQAKKNKNVVKKKKKK 104 (114)
Q Consensus 86 lLDEec~~Pk~td~~~~~~ 104 (114)
||||||++|++||+.=-.|
T Consensus 528 lLDEec~~p~~tD~~f~~k 546 (770)
T 1w9i_A 528 LLDEQSVFPNATDNTLITK 546 (770)
T ss_dssp HHHHHHSSSSCCHHHHHHH
T ss_pred hhhhhhCCCCCChHHHHHH
Confidence 9999999999999865433
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2.3e-34 Score=246.90 Aligned_cols=93 Identities=42% Similarity=0.683 Sum_probs=86.8
Q ss_pred cceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcCCCcccccc
Q psy12116 9 QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVL 87 (114)
Q Consensus 9 ~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~kP~GLlslL 87 (114)
.+++|||||||.|+.|+|||||||||||+||++|++++|..||+||..|||+|..++| .||++|||||++ |+|||+||
T Consensus 456 ~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lL 534 (783)
T 4db1_A 456 FIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSIL 534 (783)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHH
T ss_pred eEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhh
Confidence 4566699999999999999999999999999999999999999999999999999999 599999999995 89999999
Q ss_pred hhhhccccchhHHHH
Q psy12116 88 DDQAKKNKNVVKKKK 102 (114)
Q Consensus 88 DEec~~Pk~td~~~~ 102 (114)
||||++|++||+.=-
T Consensus 535 DEec~~p~~tD~tf~ 549 (783)
T 4db1_A 535 EEECMFPKATDMTFK 549 (783)
T ss_dssp CC-TTCTTCCHHHHH
T ss_pred hHHhcCCCCCHHHHH
Confidence 999999999998543
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=2.9e-34 Score=247.66 Aligned_cols=95 Identities=43% Similarity=0.684 Sum_probs=88.8
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcCCCccccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 86 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~kP~GLlsl 86 (114)
..+++|||||||.|+.|+|||||||||||+||++|++++|..||+||..|||+|..++| .||++|||||++ |.|||+|
T Consensus 454 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlsl 532 (837)
T 1kk8_A 454 YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSI 532 (837)
T ss_dssp EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHH
T ss_pred ceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHH
Confidence 34566699999999999999999999999999999999999999999999999999999 699999999996 9999999
Q ss_pred chhhhccccchhHHHHH
Q psy12116 87 LDDQAKKNKNVVKKKKK 103 (114)
Q Consensus 87 LDEec~~Pk~td~~~~~ 103 (114)
|||||++|++||+.=-.
T Consensus 533 LDEec~~p~~tD~tf~~ 549 (837)
T 1kk8_A 533 LEEECMFPKADDKSFQD 549 (837)
T ss_dssp HHHHTTCTTCCHHHHHH
T ss_pred HHHHhcCCCCChHHHHH
Confidence 99999999999986443
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=8.4e-34 Score=249.75 Aligned_cols=92 Identities=47% Similarity=0.637 Sum_probs=87.5
Q ss_pred cceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccch
Q psy12116 9 QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 88 (114)
Q Consensus 9 ~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslLD 88 (114)
.+++|||||||.|+.|||||||||||||+||++|++++|..|+++|..|||+|..++|.||++|||||+++ +|||+|||
T Consensus 432 ~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLd 510 (1080)
T 2dfs_A 432 FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLD 510 (1080)
T ss_dssp EEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHH
T ss_pred eEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeecc
Confidence 45666999999999999999999999999999999999999999999999999999999999999999985 99999999
Q ss_pred hhhccccchhHHH
Q psy12116 89 DQAKKNKNVVKKK 101 (114)
Q Consensus 89 Eec~~Pk~td~~~ 101 (114)
|||++|++||+.=
T Consensus 511 ee~~~p~~tD~~f 523 (1080)
T 2dfs_A 511 EECKMPKGSDDTW 523 (1080)
T ss_dssp HHTTSTTCCHHHH
T ss_pred ccccCCCCChHHH
Confidence 9999999999753
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.1e-33 Score=247.42 Aligned_cols=96 Identities=42% Similarity=0.632 Sum_probs=89.5
Q ss_pred CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhc--CCCccc
Q psy12116 8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLL 84 (114)
Q Consensus 8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~--kP~GLl 84 (114)
..+++|||||||.|+.|+|||||||||||+||++|++++|..||++|..|||+|..++| .||++|||||++ +|+|||
T Consensus 427 ~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil 506 (995)
T 2ycu_A 427 SFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLL 506 (995)
T ss_dssp EEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHH
T ss_pred ceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchh
Confidence 34566699999999999999999999999999999999999999999999999999999 699999999997 499999
Q ss_pred ccchhhhccccchhHHHHH
Q psy12116 85 CVLDDQAKKNKNVVKKKKK 103 (114)
Q Consensus 85 slLDEec~~Pk~td~~~~~ 103 (114)
+||||||++|++||+.=-.
T Consensus 507 ~lLdee~~~p~~tD~~f~~ 525 (995)
T 2ycu_A 507 ALLDEECWFPKATDKSFVE 525 (995)
T ss_dssp HHHHHSSSSTTCCHHHHHH
T ss_pred hhhHHHhcCCCCchHHHHH
Confidence 9999999999999986443
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.98 E-value=1.9e-33 Score=246.20 Aligned_cols=96 Identities=41% Similarity=0.631 Sum_probs=89.5
Q ss_pred CCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhc-CCCccc
Q psy12116 7 SGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLL 84 (114)
Q Consensus 7 ~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~-kP~GLl 84 (114)
...+++|||||||.|+.|+|||||||||||+||++|++++|..||++|..|||+|..++| .||++|||||++ +|+|||
T Consensus 447 ~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil 526 (1010)
T 1g8x_A 447 AYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGIL 526 (1010)
T ss_dssp SEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHH
T ss_pred CceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeee
Confidence 344666799999999999999999999999999999999999999999999999999999 599999999998 499999
Q ss_pred ccchhhhccccchhHHHH
Q psy12116 85 CVLDDQAKKNKNVVKKKK 102 (114)
Q Consensus 85 slLDEec~~Pk~td~~~~ 102 (114)
+||||||++|++||+.=-
T Consensus 527 ~lLdee~~~p~~td~~f~ 544 (1010)
T 1g8x_A 527 ALLDEQSVFPNATDNTLI 544 (1010)
T ss_dssp HHHHHHTTSSSCCHHHHH
T ss_pred hhhhHHhCCCCCChHHHH
Confidence 999999999999997643
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.98 E-value=2.4e-33 Score=247.97 Aligned_cols=94 Identities=41% Similarity=0.627 Sum_probs=87.1
Q ss_pred cceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhcC--CCcccc
Q psy12116 9 QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLC 85 (114)
Q Consensus 9 ~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~k--P~GLls 85 (114)
.+++|||||||.|+.|||||||||||||+||++|++++|..++++|..|||+|.+|+| .||++|||||+++ |+|||+
T Consensus 459 ~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~ 538 (1184)
T 1i84_S 459 FLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLA 538 (1184)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHH
T ss_pred eEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchh
Confidence 4566699999999999999999999999999999999999999999999999999999 5999999999962 349999
Q ss_pred cchhhhccccchhHHHH
Q psy12116 86 VLDDQAKKNKNVVKKKK 102 (114)
Q Consensus 86 lLDEec~~Pk~td~~~~ 102 (114)
||||||++|++||..=-
T Consensus 539 lLdee~~~p~~td~~~~ 555 (1184)
T 1i84_S 539 LLDEECWFPKATDTSFV 555 (1184)
T ss_dssp HHHHTTSCTTCCHHHHH
T ss_pred hhhhhhCCCCCChHHHH
Confidence 99999999999997643
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=53.37 E-value=4 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.8
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy12116 67 SDNTLCLQLVEGKPNGLLCVLDDQAKK 93 (114)
Q Consensus 67 ~dn~~~ldLi~~kP~GLlslLDEec~~ 93 (114)
..|...+|++.....|+=..|.|+|.|
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchhc
Confidence 357889999998889999999999987
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=48.00 E-value=5.1 Score=23.41 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.8
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy12116 67 SDNTLCLQLVEGKPNGLLCVLDDQAKK 93 (114)
Q Consensus 67 ~dn~~~ldLi~~kP~GLlslLDEec~~ 93 (114)
..|...+|++.....|+=..|.|+|.|
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchhc
Confidence 357889999998889999999999987
Done!