RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12116
(114 letters)
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 129 bits (326), Expect = 2e-36
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 85 CVLDDQ-----------AKKNKNVVKKKKKKKKKKKKKKKG 114
+LD+ +K + K +
Sbjct: 457 SLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRS 497
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 128 bits (325), Expect = 3e-36
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 85 CVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKK 113
+LD++ + ++ + +K K
Sbjct: 523 DILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAI 563
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 123 bits (312), Expect = 2e-34
Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 85 CVLDDQ------------AKKNKNVVKKKKKKKKKKKKKK 112
+LD++ K + K +K + K
Sbjct: 507 DLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNK 546
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 120 bits (303), Expect = 3e-33
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 83
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 84 LCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKKG 114
+ +L+++ AK N + K +K + K K
Sbjct: 531 MSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKP 573
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 119 bits (300), Expect = 8e-33
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 82
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 83 LLCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKK 113
+L +LD+Q K + + KK K ++ + K +
Sbjct: 525 ILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTE 567
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 118 bits (297), Expect = 2e-32
Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 85 CVLDDQ------------AKKNKNVVKKKKKKKKKKKKKK 112
+LD++ K + K +K + K
Sbjct: 507 DLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNK 546
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 118 bits (297), Expect = 2e-32
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 83
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
Query: 84 LCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKKG 114
L +L+++ K +N + K + K K +
Sbjct: 530 LSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPN 572
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 113 bits (285), Expect = 7e-31
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 81
SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503
Query: 82 GLLCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKKG 114
GLL +LD++ K + K ++ + + +
Sbjct: 504 GLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQAD 548
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 112 bits (283), Expect = 2e-30
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 82
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 83 LLCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKK 113
+L +LD+Q K + + KK K ++ + K +
Sbjct: 525 ILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTE 567
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 107 bits (268), Expect = 1e-28
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 81
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 82 GLLCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKKG 114
G+L +LD++ K + K +K K+ K K
Sbjct: 535 GVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTE 579
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.006
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 11 ARLVIRRAWVRSQPSFEQLCINYAN--------EHLQYYFNQHVFQYEQEEYNKEGIRWR 62
A V V+ + F+ +N N E LQ Q + + I+ R
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 63 HIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKNVVK 99
L + N LL VL + +N
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL-VLLNV--QNAKAWN 260
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 31.0 bits (70), Expect = 0.067
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKKG 114
D+ + KKKKKKKKK+G
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 28.3 bits (63), Expect = 0.44
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
D+ ++ + KKKKKKKKK
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKK 106
Score = 28.0 bits (62), Expect = 0.60
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
DD+ KKKKKKKKK+
Sbjct: 84 DDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 27.6 bits (61), Expect = 0.87
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
D+ + + KKKKKKKKK+ K
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 27.2 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKK 112
D + KKKKKKKKK+ K
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 27.2 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
+D KKKKKKKKK+ K
Sbjct: 86 EDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 26.4 bits (58), Expect = 2.1
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
+ KKKKKKKK
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKK 105
Score = 26.0 bits (57), Expect = 2.8
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 77 EGKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
E L+D+ + + KKKKK
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKK 102
Score = 25.3 bits (55), Expect = 5.2
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
D + ++ KKKKKK
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKK 103
Score = 25.3 bits (55), Expect = 5.3
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKK 113
++ + +++ KKKKKKK
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 24.9 bits (54), Expect = 8.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKK 112
+ A + KKK++KKKK K
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPS 49
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 26.9 bits (60), Expect = 1.2
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 91 AKKNKNVVKKKKKKKKKKKKKKK 113
AK + ++ + +K
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASA 24
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome
protein interacting protein...; polyproline,
protein-protein complex; NMR {Rattus norvegicus} SCOP:
b.55.1.4
Length = 152
Score = 26.9 bits (59), Expect = 1.2
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 82 GLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
L +++AKK + V ++++K +K++
Sbjct: 120 ALNFANEEEAKKFRKAVTDLLGRRQRKSEKRR 151
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 27.1 bits (59), Expect = 1.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 90 QAKKNKNVVKKKKKKKKKKKKKKKG 114
+ K ++KKKK+ K K G
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTKPG 101
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster,
iron-sulfur cluster, hydrolase/DNA complex; HET: PED;
1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1
PDB: 1orp_A* 1p59_A*
Length = 226
Score = 26.8 bits (60), Expect = 1.3
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 79 KPNGLLCVLDDQAKKNKNVVKKKKKKKKKKK 109
P C L ++ K ++K+++K +K
Sbjct: 196 SPQCPSCPLLHLCREGKKRMRKREEKAANQK 226
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 26.6 bits (58), Expect = 1.5
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 82 GLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
L +++AKK + V ++++K +K++
Sbjct: 137 ALNFANEEEAKKFRKAVTDLLGRRQRKSEKRR 168
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 27.1 bits (59), Expect = 1.6
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 36 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK--PNGLLCVLDDQAKK 93
E Y + + Y +E + + ++ + +L + + + +D K
Sbjct: 227 EDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKF 286
Query: 94 NKNVVKKKKKKKKKKKKKKK 113
N +K KK K +K
Sbjct: 287 NTKDLKTGKKNSKMTAAQKA 306
Score = 24.8 bits (53), Expect = 9.0
Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 1/89 (1%)
Query: 27 EQLCINYANEHLQYYFNQHVFQYEQEEYN-KEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 85
E+ + YA+ + Y + + + E S
Sbjct: 226 EEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTK 285
Query: 86 VLDDQAKKNKNVVKKKKKKKKKKKKKKKG 114
K K K +K K K G
Sbjct: 286 FNTKDLKTGKKNSKMTAAQKALAKVDKSG 314
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.7 bits (58), Expect = 1.8
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 87 LDDQAKKNKNVVKKKKKKKKKKKKKKKG 114
D Q + ++V + + K ++ K+
Sbjct: 240 DDAQGRTLRDVGELTRSSTKTRRSIKRP 267
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 26.2 bits (57), Expect = 2.0
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 78 GKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
GKP GL + + N + KK+ K
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFK 39
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 2.8
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 35 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 68
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 25.9 bits (56), Expect = 3.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 93 KNKNVVKKKKKKKKKKKKK 111
KN + KK KK+
Sbjct: 5 KNPGLKAGGGKKGAKKRTI 23
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 25.0 bits (54), Expect = 4.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKKG 114
D+A + K K+KKKK KG
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKG 31
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 25.7 bits (56), Expect = 4.3
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 90 QAKKNKNVVKKKKKKKKKKKKKKK 113
+ + + K K+ +K
Sbjct: 9 EPQNRDISSRSNGKNPFKRSTGRK 32
Score = 25.3 bits (55), Expect = 5.9
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 90 QAKKNKNVVKKKKKKKKKKKKKKK 113
+ K K+ +K
Sbjct: 12 NRDISSRSNGKNPFKRSTGRKVSN 35
Score = 24.9 bits (54), Expect = 8.1
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 90 QAKKNKNVVKKKKKKKKKKKKKKK 113
+ +++ K K+ +K
Sbjct: 13 RDISSRSNGKNPFKRSTGRKVSNV 36
Score = 24.9 bits (54), Expect = 8.9
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 90 QAKKNKNVVKKKKKKKKKKKKKKK 113
Q +N+++ + K K+ +
Sbjct: 8 QEPQNRDISSRSNGKNPFKRSTGR 31
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 25.0 bits (54), Expect = 5.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 49 YEQEEYNKEGIRWRHIEFSDNT 70
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 5.7
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 4 RWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRH 63
+WR Q RL A + EQ A + L+ + Q EQ E NK R
Sbjct: 89 KWREEQRKRLQELDAASKVM---EQEWREKAKKDLE---EWNQRQSEQVEKNKINNRIAD 142
Query: 64 IEFSDN 69
F
Sbjct: 143 KAFYQQ 148
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 25.1 bits (54), Expect = 6.8
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 92 KKNKNVVKKKKKKKKKKKKKKK 113
++ + + K K+ + KK
Sbjct: 149 PQSYDSINPDLIKDKRSPEGKK 170
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 24.8 bits (54), Expect = 7.3
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 91 AKKNKNVVKKKKKKKKKKKKKKK 113
A K V+K+
Sbjct: 2 APKKTAPVQKEVISYGPPNVGAN 24
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 24.4 bits (53), Expect = 7.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 92 KKNKNVVKKKKKKKKKKKKKKKG 114
K K ++ K K K G
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSG 27
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 25.1 bits (55), Expect = 7.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 91 AKKNKNVVKKKKKKKKKKKKKKKG 114
A + KK+KK+ + KKK
Sbjct: 474 APIEQEPSKKQKKQHEGSKKKAAA 497
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 24.6 bits (53), Expect = 8.0
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 49 YEQEEYNKEGIRWRHIEFSD 68
Y+ GI F D
Sbjct: 59 YDATLVKSRGIDVHSWPFDD 78
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 24.9 bits (55), Expect = 8.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 90 QAKKNKNVVKKKKKKKKKKKKKKK 113
+ KN VKK K K K K
Sbjct: 447 ELPKNTTSVKKAKGKNPKNTTSVK 470
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 24.2 bits (52), Expect = 9.2
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 78 GKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
GKP G+ + K+ + +
Sbjct: 4 GKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWR 39
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 24.4 bits (53), Expect = 9.5
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 76 VEGKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKK 112
+P+ LCV +A ++ ++ K + KK
Sbjct: 97 ATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKN 133
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 24.3 bits (53), Expect = 9.6
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 64 IEFSDNTLCLQLVEGK------PNGL------LCVLDDQAKKNKNVVKKKKKKKKKKKKK 111
I + L + +++ + NG + +L + + + K++ K +
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 112 K 112
K
Sbjct: 73 K 73
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 24.6 bits (53), Expect = 9.6
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 24 PSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCL--QLVEGKPN 81
P + + + ++ N E+ G ++F+D+ + LV+
Sbjct: 140 PQDDDARTDAVDSVVRDIQNTQC--LLNVEHLSAGCPHVTLQFADSKGDVGLGLVK---E 194
Query: 82 GLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKKG 114
GL+ V + K+ + V+ + ++ K +
Sbjct: 195 GLVMVEVRKEKQFQKVITEYLNAQESAKSARLN 227
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 24.7 bits (54), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 86 VLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
V D + K +K +KKKKKK K
Sbjct: 356 VQDAELKALLQSSASRKTQKKKKKKASK 383
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.412
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,746,339
Number of extensions: 93177
Number of successful extensions: 1519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1243
Number of HSP's successfully gapped: 233
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)