RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12116
(114 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 75.9 bits (186), Expect = 5e-18
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 85 CVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKK 113
+LD+ K K + K +
Sbjct: 449 SLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRS 489
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 70.5 bits (172), Expect = 4e-16
Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 24 PSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 83
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 424 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGI 483
Query: 84 LCVLDDQAKKNKNVVKKKKKKKKKKKKKK 112
+L+++ K K K + K
Sbjct: 484 FSILEEECMFPKATDTSFKNKLYDEHLGK 512
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 69.8 bits (170), Expect = 6e-16
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 20 VRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 78
+ SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 392 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 451
Query: 79 --KPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKK 113
P G+L +LD++ K +K +++
Sbjct: 452 PTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHA 488
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 68.2 bits (166), Expect = 2e-15
Identities = 43/89 (48%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 24 PSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 83
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+
Sbjct: 385 NSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGV 443
Query: 84 LCVLDDQAKKNKNVVKKKKKKKKKKKKKK 112
L +LD++ K K +K K
Sbjct: 444 LDLLDEECKMPKGSDDTWAQKLYNTHLNK 472
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 67.4 bits (164), Expect = 5e-15
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 85 CVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKKG 114
+L+++ K +N + K + K K +
Sbjct: 483 SILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPN 524
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 64.7 bits (157), Expect = 4e-14
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 22 SQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K 79
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +
Sbjct: 415 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 474
Query: 80 PNGLLCVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKK 113
P G+L +LD+Q K + + KK K ++ + K +
Sbjct: 475 PPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTE 520
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.7 bits (56), Expect = 1.1
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 88 DDQAKKNKNVVKKKKKKKKKKKKKKKG 114
+++ + +++ K KKK
Sbjct: 85 NEKEQITQHIADLSSKAAGTPKKKAVV 111
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 25.3 bits (55), Expect = 1.9
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 92 KKNKNVVKKKKKKKKKKKKKKK 113
K K++ K+ + + K +K++
Sbjct: 161 KSGKDMTKRSSQTQNKASRKRQ 182
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.2 bits (55), Expect = 2.3
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 31 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 69
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 24.9 bits (54), Expect = 2.6
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 5 WRSGQD--ARLVIRRAWVRSQPSFEQLCINYANEHLQY--YFNQH 45
SG D RL + PS+ L + + N H
Sbjct: 432 VHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALEHH 476
>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal
domain {Influenza A virus [TaxId: 11320]}
Length = 127
Score = 23.7 bits (51), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 79 KPNGLLCVLDDQAKKNKNVVKK 100
K G LC+ DQA +KN++ K
Sbjct: 32 KVAGPLCIRMDQAIMDKNIILK 53
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Length = 209
Score = 23.3 bits (50), Expect = 7.6
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 61 WRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKN 96
W +D ++ QLV+ +P G+L +D + N
Sbjct: 15 WDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTR 50
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 23.5 bits (50), Expect = 7.9
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 47 FQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKNVV 98
+ Y + GI H +D ++ L K + +
Sbjct: 65 VPNLLDLYQQCGIITHHHPIADGGTPDI---ASCCEIMEELTTCLKNYRKTL 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.412
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 446,423
Number of extensions: 20446
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 71
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)