Query psy12122
Match_columns 412
No_of_seqs 165 out of 595
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 19:16:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08719 ribonuclease H; Revie 98.5 7E-08 1.5E-12 86.8 4.7 45 23-71 102-146 (147)
2 PRK00203 rnhA ribonuclease H; 98.4 1.5E-07 3.2E-12 84.1 2.0 45 25-73 99-143 (150)
3 PRK06548 ribonuclease H; Provi 98.3 3.3E-07 7.2E-12 84.1 2.4 46 24-73 98-143 (161)
4 PF00075 RNase_H: RNase H; In 98.2 6.2E-07 1.3E-11 76.0 2.5 31 39-70 100-131 (132)
5 COG0328 RnhA Ribonuclease HI [ 98.0 3.7E-06 7.9E-11 77.1 3.9 46 24-73 100-146 (154)
6 cd06222 RnaseH RNase H (RNase 97.5 0.00023 4.9E-09 57.1 5.5 44 24-70 87-130 (130)
7 KOG3752|consensus 97.0 0.00051 1.1E-08 70.6 3.1 46 26-72 320-365 (371)
8 PF13966 zf-RVT: zinc-binding 95.5 0.0086 1.9E-07 48.8 2.3 33 150-182 51-84 (86)
9 PRK13907 rnhA ribonuclease H; 90.1 0.31 6.8E-06 41.8 3.5 41 24-71 86-126 (128)
10 PF13456 RVT_3: Reverse transc 80.0 3 6.5E-05 32.3 4.1 53 10-70 30-85 (87)
11 PRK07238 bifunctional RNase H/ 78.6 2.4 5.3E-05 43.1 4.1 57 12-73 76-133 (372)
12 PRK07708 hypothetical protein; 65.5 6.2 0.00013 38.2 3.3 25 44-73 185-209 (219)
13 COG3215 PilZ Tfp pilus assembl 32.1 28 0.0006 30.9 1.6 45 352-404 42-87 (117)
14 PF03849 Tfb2: Transcription f 26.1 52 0.0011 34.3 2.7 56 286-356 293-350 (366)
15 KOG3471|consensus 21.7 51 0.0011 35.4 1.6 44 298-356 315-359 (465)
16 PRK00414 gmhA phosphoheptose i 21.7 68 0.0015 30.0 2.3 47 266-317 139-185 (192)
No 1
>PRK08719 ribonuclease H; Reviewed
Probab=98.55 E-value=7e-08 Score=86.83 Aligned_cols=45 Identities=36% Similarity=0.432 Sum_probs=37.7
Q ss_pred CCCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccC
Q psy12122 23 RPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLG 71 (412)
Q Consensus 23 ~~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~ 71 (412)
.++.|+|...+.+ .....|++.| ||||+|++|||.||+||++|+.
T Consensus 102 v~n~dl~~~i~~l---~~~~~i~~~~-VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 102 VANRDLWQQVDEL---RARKYVEVEK-VTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred cccHHHHHHHHHH---hCCCcEEEEE-ecCCCCChhHHHHHHHHHHHhh
Confidence 4568999874444 3467899999 9999999999999999999975
No 2
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=98.37 E-value=1.5e-07 Score=84.06 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=37.1
Q ss_pred CcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122 25 PKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP 73 (412)
Q Consensus 25 ~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~ 73 (412)
+.|||..... ......|.+.| ||||+|++|||.||+|||+|+...
T Consensus 99 n~dl~~~i~~---l~~~~~v~~~w-V~~H~~~~~N~~AD~lA~~a~~~~ 143 (150)
T PRK00203 99 NVDLWQRLDA---ALKRHQIKWHW-VKGHAGHPENERCDELARAGAEEA 143 (150)
T ss_pred cHHHHHHHHH---HhccCceEEEE-ecCCCCCHHHHHHHHHHHHHHHHh
Confidence 5789987433 34557899998 999999999999999999998664
No 3
>PRK06548 ribonuclease H; Provisional
Probab=98.29 E-value=3.3e-07 Score=84.12 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122 24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP 73 (412)
Q Consensus 24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~ 73 (412)
.+.|||.+...+ .....|+|.| ||||+|++|||.||+||++|+...
T Consensus 98 ~N~dL~~~l~~l---~~~~~v~~~w-VkgHsg~~gNe~aD~LA~~aa~~~ 143 (161)
T PRK06548 98 LNQEIIQEIDSL---MENRNIRMSW-VNAHTGHPLNEAADSLARQAANNF 143 (161)
T ss_pred ccHHHHHHHHHH---HhcCceEEEE-EecCCCCHHHHHHHHHHHHHHHHh
Confidence 379999884444 3456899988 999999999999999999988554
No 4
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=98.22 E-value=6.2e-07 Score=76.01 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=27.5
Q ss_pred cCCCCCeEEEEecCCCCC-CCChHHhHHHhhcc
Q psy12122 39 LCPKSPKYGKVSYNHVGI-AGNEAADREAKSTL 70 (412)
Q Consensus 39 ~s~~~I~liWWVPGHsGI-~GNE~ADrLAKeAa 70 (412)
..+..|.+.| ||||+|+ .|||.||+|||+|+
T Consensus 100 ~~~~~v~~~~-V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 100 SRGIKVRFRW-VPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHSSEEEEEE-SSSSSSSHHHHHHHHHHHHHHH
T ss_pred ccceEEeeee-ccCcCCCchhHHHHHHHHHHhc
Confidence 3467799998 9999999 69999999999986
No 5
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=98.04 E-value=3.7e-06 Score=77.08 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCcchHhhhhhhhhhcCCC-CCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122 24 PPKSLWGQKTNLIFFLCPK-SPKYGKVSYNHVGIAGNEAADREAKSTLGSP 73 (412)
Q Consensus 24 ~~~~lw~~~~nli~~~s~~-~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~ 73 (412)
.++|||.+ ++.....+ .|.+.| ||||.|.++||.||+||++|+...
T Consensus 100 kn~dl~~~---~~~~~~~~~~v~~~W-VkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 100 KNKDLWEE---LDELLKRHELVFWEW-VKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred ccHHHHHH---HHHHHhhCCeEEEEE-eeCCCCChHHHHHHHHHHHHHHhh
Confidence 35689987 66666666 788887 999999999999999999997764
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=97.47 E-value=0.00023 Score=57.11 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhcc
Q psy12122 24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTL 70 (412)
Q Consensus 24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa 70 (412)
....+|....+++ .....+++.| ||+|+|+++|+.||.+||+|.
T Consensus 87 ~~~~~~~~i~~~~--~~~~~~~i~~-v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 87 KNVDLWQRLLALL--KRFHKVRFEW-VPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred hhHHHHHHHHHHH--hCCCeEEEEE-cCCCCCCcchHHHHHHHHhhC
Confidence 4444554433332 2456788888 999999999999999999873
No 7
>KOG3752|consensus
Probab=96.96 E-value=0.00051 Score=70.62 Aligned_cols=46 Identities=24% Similarity=0.214 Sum_probs=37.4
Q ss_pred cchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCC
Q psy12122 26 KSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGS 72 (412)
Q Consensus 26 ~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~ 72 (412)
.++..+..+|....+.++|++.| ||||.||.|||+||.+|++++..
T Consensus 320 ~~~~~e~~~l~q~~~~~~vq~~~-V~Gh~gi~gne~Ad~lARkgs~~ 365 (371)
T KOG3752|consen 320 QDFFNELDELEQEISNKKVQQEY-VGGHSGILGNEMADALARKGSTL 365 (371)
T ss_pred chHHHHHHHHHhhhccCceEEEE-ecCcCCcchHHHHHHHHhhhhhh
Confidence 45556666666655678999999 99999999999999999988544
No 8
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=95.54 E-value=0.0086 Score=48.78 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.3
Q ss_pred ccccCCCCCCCCCCCCc-ccccceeccccccccc
Q psy12122 150 SFLFRREDPPVCDKCNV-PLTVEHIVLSCRKMRF 182 (412)
Q Consensus 150 lhRfnk~DsP~C~~CG~-~ETVeHIL~eCPry~~ 182 (412)
+++.+...++.|..||. .||++|+|++||....
T Consensus 51 l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~~ 84 (86)
T PF13966_consen 51 LQRRGIQVDPICPLCGNEEETIEHLFFHCPFARE 84 (86)
T ss_pred hhccCCccCCccccCCCccccccceeccCcCccc
Confidence 34567778899999995 8999999999997643
No 9
>PRK13907 rnhA ribonuclease H; Provisional
Probab=90.14 E-value=0.31 Score=41.82 Aligned_cols=41 Identities=17% Similarity=0.015 Sum_probs=28.1
Q ss_pred CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccC
Q psy12122 24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLG 71 (412)
Q Consensus 24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~ 71 (412)
...++|.....+. ......++.|||. ++|+.||.+|+.|..
T Consensus 86 ~~~~l~~~~~~l~---~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~ 126 (128)
T PRK13907 86 MFAPLLEEALQYI---KSFDLFFIKWIPS----SQNKVADELARKAIL 126 (128)
T ss_pred hHHHHHHHHHHHH---hcCCceEEEEcCc----hhchhHHHHHHHHHh
Confidence 4577887744433 3334444445998 599999999999864
No 10
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=79.97 E-value=3 Score=32.32 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCC--CCcchHhhhhhhhhh-cCCCCCeEEEEecCCCCCCCChHHhHHHhhcc
Q psy12122 10 VRVVLREIKGAPRR--PPKSLWGQKTNLIFF-LCPKSPKYGKVSYNHVGIAGNEAADREAKSTL 70 (412)
Q Consensus 10 ~~~~l~~i~~~~~~--~~~~lw~~~~nli~~-~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa 70 (412)
+..+.+-|.+.... +...++.. +... ....++.+.| || =++|..||.+||.|.
T Consensus 30 s~~vv~~i~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~-i~----r~~N~~A~~LA~~a~ 85 (87)
T PF13456_consen 30 SQLVVDAINGRSSSRSELRPLIQD---IRSLLDRFWNVSVSH-IP----REQNKVADALAKFAL 85 (87)
T ss_dssp -HHHHHHHTTSS---SCCHHHHHH---HHHHHCCCSCEEEEE-------GGGSHHHHHHHHHHH
T ss_pred Cccccccccccccccccccccchh---hhhhhccccceEEEE-EC----hHHhHHHHHHHHHHh
Confidence 34567777775322 22223322 2222 3446778887 88 689999999999885
No 11
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=78.65 E-value=2.4 Score=43.06 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCCcchHhhhhhhhhh-cCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122 12 VVLREIKGAPRRPPKSLWGQKTNLIFF-LCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP 73 (412)
Q Consensus 12 ~~l~~i~~~~~~~~~~lw~~~~nli~~-~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~ 73 (412)
.|.+-|.+.-.....++|.-...+... ..-..+++.| ||. ++|+.||.||++|....
T Consensus 76 lvi~~i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~-v~r----~~N~~AD~LA~~a~~~~ 133 (372)
T PRK07238 76 LVVEQMSGRWKVKHPDMKPLAAQARELASQFGRVTYTW-IPR----ARNAHADRLANEAMDAA 133 (372)
T ss_pred HHHHHhCCCCccCChHHHHHHHHHHHHHhcCCceEEEE-CCc----hhhhHHHHHHHHHHHhh
Confidence 344455543222334566533223222 2336788988 997 78999999999987554
No 12
>PRK07708 hypothetical protein; Validated
Probab=65.47 E-value=6.2 Score=38.20 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122 44 PKYGKVSYNHVGIAGNEAADREAKSTLGSP 73 (412)
Q Consensus 44 I~liWWVPGHsGI~GNE~ADrLAKeAa~~~ 73 (412)
+.+.| ||- .-|+.||+|||.|....
T Consensus 185 ~~~~~-VpR----~~N~~AD~LAk~Al~~~ 209 (219)
T PRK07708 185 PVYEP-ISR----KQNKEADQLATQALEGT 209 (219)
T ss_pred EEEEE-CCc----hhhhHHHHHHHHHHhcC
Confidence 55666 874 67999999999998765
No 13
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.11 E-value=28 Score=30.88 Aligned_cols=45 Identities=38% Similarity=0.790 Sum_probs=33.2
Q ss_pred HHhhcceeeeeecccCCC-cccccccccceeeeeeecCCCCCCCCCCCcccccc
Q psy12122 352 AFRVGQEWVFKAHHINSP-SLGKAGKRQQHAIAWMVDGQPSGYQPRPKGIGCKL 404 (412)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (412)
-|+.|.|-..----.++| -+--||| .||. .|.|-|.||+|||-.+
T Consensus 42 ~y~iG~evfl~l~lld~pekl~vagk-----VaWi---tP~gt~sr~~GiGv~f 87 (117)
T COG3215 42 VYSIGEEVFLLLELLDFPEKLPVAGK-----VAWI---TPVGTQSRPAGIGVQF 87 (117)
T ss_pred ccccchhhhhhhhhcCchhhccccce-----EEEE---ccCCCCCCCCceeeec
Confidence 356677644444556777 6777777 6898 5899999999999755
No 14
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.13 E-value=52 Score=34.28 Aligned_cols=56 Identities=34% Similarity=0.564 Sum_probs=36.8
Q ss_pred ccceeeeeeCC-ceEEEeehhhh-hHHHHHhhccccceecccchhhcccceEEEEeeecccchhhHHHHHhhc
Q psy12122 286 ENAECFIHLGI-PAVYLYTDTVY-SSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVG 356 (412)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (412)
.+.+.||-+-. =-||.||+.-. -++|++|||+.- .+-|--|+ .+--|.|.+||..|
T Consensus 293 ~~~~g~iivETNfrvYAYT~s~l~iaiL~lF~~~~~--r~pnlvvg-------------~iTr~Sv~~A~~~G 350 (366)
T PF03849_consen 293 SNKEGFIIVETNFRVYAYTNSPLQIAILSLFCELKY--RFPNLVVG-------------QITRESVRRALKNG 350 (366)
T ss_pred cccCceEEEEecceEEEecCCHHHHHHHHHHHHHHh--cCCCeEEE-------------EEcHHHHHHHHHcC
Confidence 34455554432 25899998654 589999999863 34442222 35678999999887
No 15
>KOG3471|consensus
Probab=21.74 E-value=51 Score=35.44 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=30.4
Q ss_pred eEEEeehhhhh-HHHHHhhccccceecccchhhcccceEEEEeeecccchhhHHHHHhhc
Q psy12122 298 AVYLYTDTVYS-SVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVG 356 (412)
Q Consensus 298 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (412)
-||-||+.-+. +|++||||+.-- +.|--|. -+--|.+.+|++-|
T Consensus 315 riYAYT~S~lQiAvi~LF~~l~~r--f~nlvvG-------------~iTreSVr~Al~~G 359 (465)
T KOG3471|consen 315 RIYAYTNSPLQIAVIALFTELTYR--FPNLVVG-------------VITRESVRRALDNG 359 (465)
T ss_pred EEEEecCCHHHHHHHHHHHHHHhh--cccccee-------------eeeHHHHHHHHhcC
Confidence 47999998775 899999998632 1221111 23468888998877
No 16
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.70 E-value=68 Score=30.03 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=37.2
Q ss_pred ccEEEEeccCCcccccccccccceeeeeeCCceEEEeehhhhhHHHHHhhcc
Q psy12122 266 AKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCEL 317 (412)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (412)
+++|.++... .|+.++.++..|.+..+--+...+..-+-+.|+.|++
T Consensus 139 ~~iI~iT~~~-----~s~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 185 (192)
T PRK00414 139 MKVITLTGKD-----GGKMAGLADIEIRVPHFGYADRIQEIHIKVIHILIQL 185 (192)
T ss_pred CeEEEEeCCC-----CChhHHhCCEEEEeCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6788888763 4788899999888877555557777888899999986
Done!