Query psy12124
Match_columns 115
No_of_seqs 127 out of 1773
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 19:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 3.6E-25 7.8E-30 125.4 10.8 111 1-115 41-151 (160)
2 KOG0027|consensus 99.9 1.5E-24 3.2E-29 124.2 10.8 115 1-115 29-144 (151)
3 KOG0028|consensus 99.9 1.9E-20 4.1E-25 104.7 9.9 111 1-114 54-164 (172)
4 PTZ00183 centrin; Provisional 99.8 5.8E-20 1.3E-24 105.8 11.5 111 1-114 38-148 (158)
5 PTZ00184 calmodulin; Provision 99.8 6.5E-20 1.4E-24 104.5 11.0 111 1-114 32-142 (149)
6 KOG0030|consensus 99.8 1.3E-18 2.8E-23 95.3 7.4 111 2-114 33-145 (152)
7 KOG0037|consensus 99.8 2E-17 4.2E-22 97.1 10.4 104 1-114 78-182 (221)
8 KOG0031|consensus 99.8 3.2E-17 7E-22 91.3 10.0 107 1-114 53-159 (171)
9 KOG0044|consensus 99.7 8.9E-17 1.9E-21 94.2 8.8 109 2-114 49-169 (193)
10 KOG0034|consensus 99.7 6.4E-16 1.4E-20 90.5 8.5 95 18-115 68-170 (187)
11 KOG0036|consensus 99.6 8.1E-15 1.7E-19 93.2 10.9 104 2-114 36-140 (463)
12 cd05022 S-100A13 S-100A13: S-1 99.6 1.4E-14 3E-19 75.6 5.2 62 54-115 6-70 (89)
13 KOG0044|consensus 99.5 1.2E-13 2.7E-18 81.1 8.8 101 11-114 21-122 (193)
14 PF13499 EF-hand_7: EF-hand do 99.5 1.9E-14 4.1E-19 71.5 4.6 57 58-114 2-62 (66)
15 KOG0027|consensus 99.5 1.4E-13 3E-18 78.9 7.5 96 15-114 7-107 (151)
16 PTZ00183 centrin; Provisional 99.5 9.2E-13 2E-17 75.8 9.6 96 15-114 16-112 (158)
17 COG5126 FRQ1 Ca2+-binding prot 99.5 1.3E-12 2.7E-17 74.6 9.7 94 16-114 20-114 (160)
18 cd05027 S-100B S-100B: S-100B 99.5 2.2E-13 4.8E-18 71.1 6.1 61 54-114 6-73 (88)
19 PF13499 EF-hand_7: EF-hand do 99.4 2E-12 4.4E-17 64.2 8.0 65 18-82 2-66 (66)
20 PTZ00184 calmodulin; Provision 99.4 1.7E-12 3.6E-17 73.9 8.6 95 16-114 11-106 (149)
21 KOG0038|consensus 99.4 2.1E-12 4.5E-17 71.9 6.4 93 19-114 74-171 (189)
22 PLN02964 phosphatidylserine de 99.4 2.6E-11 5.7E-16 82.5 11.6 79 2-84 161-243 (644)
23 PLN02964 phosphatidylserine de 99.4 1.1E-11 2.4E-16 84.2 9.5 95 16-114 143-237 (644)
24 cd05025 S-100A1 S-100A1: S-100 99.4 4E-12 8.8E-17 67.1 6.0 62 53-114 6-74 (92)
25 cd05031 S-100A10_like S-100A10 99.3 4.6E-12 1E-16 67.1 5.7 61 55-115 7-74 (94)
26 cd05029 S-100A6 S-100A6: S-100 99.3 6.9E-12 1.5E-16 65.5 5.9 60 55-114 9-73 (88)
27 KOG0028|consensus 99.3 1.4E-11 3.1E-16 69.5 7.4 95 16-114 33-128 (172)
28 smart00027 EH Eps15 homology d 99.3 1.1E-11 2.4E-16 65.9 5.8 59 54-114 8-66 (96)
29 cd05026 S-100Z S-100Z: S-100Z 99.3 1.6E-11 3.5E-16 64.9 6.1 63 53-115 7-76 (93)
30 cd00052 EH Eps15 homology doma 99.3 9.5E-12 2.1E-16 61.8 4.7 54 59-114 2-55 (67)
31 cd00213 S-100 S-100: S-100 dom 99.3 1.8E-11 3.8E-16 64.1 5.5 62 53-114 5-73 (88)
32 PF13833 EF-hand_8: EF-hand do 99.3 6.3E-12 1.4E-16 60.0 3.4 47 69-115 1-48 (54)
33 KOG4223|consensus 99.3 7.8E-12 1.7E-16 77.6 4.6 99 15-113 199-298 (325)
34 cd00051 EFh EF-hand, calcium b 99.3 2.7E-11 5.8E-16 58.8 5.6 57 58-114 2-58 (63)
35 KOG0377|consensus 99.2 1E-10 2.2E-15 75.8 8.7 100 15-114 463-609 (631)
36 cd00252 SPARC_EC SPARC_EC; ext 99.2 5.8E-11 1.3E-15 64.9 5.2 58 54-115 46-103 (116)
37 cd05023 S-100A11 S-100A11: S-1 99.1 2.2E-10 4.8E-15 59.9 6.0 62 54-115 7-75 (89)
38 KOG0034|consensus 99.1 9.6E-10 2.1E-14 64.7 8.9 94 13-114 27-126 (187)
39 PF14658 EF-hand_9: EF-hand do 99.1 2.6E-10 5.6E-15 55.7 3.6 56 60-115 2-59 (66)
40 PF13833 EF-hand_8: EF-hand do 99.1 1E-09 2.3E-14 52.2 5.6 42 2-43 10-52 (54)
41 cd05030 calgranulins Calgranul 99.0 8.9E-10 1.9E-14 57.6 5.1 61 54-114 6-73 (88)
42 KOG4223|consensus 99.0 8.7E-10 1.9E-14 68.7 5.8 101 15-115 112-223 (325)
43 cd05022 S-100A13 S-100A13: S-1 99.0 9.4E-09 2E-13 53.7 8.0 67 16-85 8-76 (89)
44 KOG0037|consensus 99.0 3.6E-09 7.8E-14 62.8 6.4 92 14-114 55-146 (221)
45 KOG0041|consensus 98.9 2.9E-09 6.3E-14 62.5 5.6 60 55-114 98-157 (244)
46 KOG0036|consensus 98.9 1.4E-08 3E-13 65.5 8.1 91 15-113 13-103 (463)
47 smart00027 EH Eps15 homology d 98.9 3.4E-08 7.3E-13 52.5 8.1 64 16-85 10-73 (96)
48 cd00052 EH Eps15 homology doma 98.9 2.4E-08 5.3E-13 49.3 7.1 61 19-85 2-62 (67)
49 PF00036 EF-hand_1: EF hand; 98.9 3.5E-09 7.6E-14 43.8 3.3 27 58-84 2-28 (29)
50 cd05026 S-100Z S-100Z: S-100Z 98.9 2.6E-08 5.7E-13 52.6 7.4 70 16-85 10-82 (93)
51 cd00051 EFh EF-hand, calcium b 98.8 4.6E-08 9.9E-13 47.1 6.8 61 18-82 2-62 (63)
52 cd05027 S-100B S-100B: S-100B 98.8 9.6E-08 2.1E-12 49.9 8.1 70 16-85 8-80 (88)
53 cd00252 SPARC_EC SPARC_EC; ext 98.8 7E-08 1.5E-12 52.9 7.7 62 13-82 45-106 (116)
54 cd05031 S-100A10_like S-100A10 98.8 3.6E-08 7.9E-13 52.2 6.1 72 15-86 7-81 (94)
55 cd05025 S-100A1 S-100A1: S-100 98.8 7.7E-08 1.7E-12 50.7 7.3 71 15-85 8-81 (92)
56 KOG0031|consensus 98.8 5.1E-08 1.1E-12 55.0 6.7 47 55-101 31-77 (171)
57 KOG0030|consensus 98.8 1E-08 2.2E-13 56.8 3.9 60 55-114 10-71 (152)
58 cd00213 S-100 S-100: S-100 dom 98.8 1.4E-07 3E-12 49.3 8.0 71 15-85 7-80 (88)
59 PF13405 EF-hand_6: EF-hand do 98.8 1.4E-08 3.1E-13 42.7 3.4 30 57-86 1-31 (31)
60 PF00036 EF-hand_1: EF hand; 98.7 4.4E-08 9.6E-13 40.5 3.8 28 17-44 1-28 (29)
61 cd05023 S-100A11 S-100A11: S-1 98.6 4.4E-07 9.5E-12 47.5 7.2 69 17-85 10-81 (89)
62 cd05029 S-100A6 S-100A6: S-100 98.6 8.2E-07 1.8E-11 46.4 7.9 66 17-85 11-80 (88)
63 cd05024 S-100A10 S-100A10: A s 98.6 5.7E-07 1.2E-11 47.0 6.3 59 55-114 7-70 (91)
64 PRK12309 transaldolase/EF-hand 98.5 1E-06 2.2E-11 57.6 8.3 58 10-84 328-385 (391)
65 KOG2643|consensus 98.5 6.1E-08 1.3E-12 62.9 2.6 83 26-114 209-308 (489)
66 KOG4251|consensus 98.5 2.4E-07 5.2E-12 56.4 4.3 98 16-113 236-338 (362)
67 cd05030 calgranulins Calgranul 98.5 4.1E-06 8.9E-11 43.8 8.1 69 17-85 9-80 (88)
68 PRK12309 transaldolase/EF-hand 98.4 6.1E-07 1.3E-11 58.6 5.6 50 53-115 331-380 (391)
69 PF13202 EF-hand_5: EF hand; P 98.4 3.4E-07 7.5E-12 36.5 2.8 23 59-81 2-24 (25)
70 KOG0377|consensus 98.4 1.5E-06 3.2E-11 57.1 6.6 71 15-85 546-616 (631)
71 KOG2643|consensus 98.4 3.8E-07 8.1E-12 59.4 3.4 29 86-114 419-447 (489)
72 PF14788 EF-hand_10: EF hand; 98.4 2.2E-06 4.8E-11 39.7 5.0 44 1-44 6-49 (51)
73 PF12763 EF-hand_4: Cytoskelet 98.4 9E-07 1.9E-11 47.6 4.0 58 55-115 9-66 (104)
74 PF14788 EF-hand_10: EF hand; 98.3 5.9E-07 1.3E-11 41.6 2.5 42 73-114 2-43 (51)
75 PF14658 EF-hand_9: EF-hand do 98.3 6E-06 1.3E-10 40.5 6.1 61 21-84 3-64 (66)
76 KOG0040|consensus 98.3 5E-06 1.1E-10 61.5 7.2 91 1-101 2274-2371(2399)
77 KOG4666|consensus 98.1 1.2E-06 2.6E-11 55.3 1.9 95 16-114 259-353 (412)
78 cd05024 S-100A10 S-100A10: A s 98.1 5.4E-05 1.2E-09 39.6 7.2 68 17-85 9-77 (91)
79 KOG0751|consensus 98.1 5.6E-05 1.2E-09 50.6 8.7 96 13-114 71-201 (694)
80 PF13202 EF-hand_5: EF hand; P 98.1 9.4E-06 2E-10 32.2 3.3 25 18-42 1-25 (25)
81 PF10591 SPARC_Ca_bdg: Secrete 98.0 3.3E-07 7.2E-12 50.0 -1.7 58 55-114 53-110 (113)
82 PF13405 EF-hand_6: EF-hand do 98.0 1.7E-05 3.7E-10 33.1 3.5 27 17-43 1-27 (31)
83 KOG0041|consensus 98.0 9.2E-05 2E-09 44.0 7.1 65 16-84 99-163 (244)
84 KOG0040|consensus 97.9 6E-05 1.3E-09 56.2 6.9 96 16-112 2253-2353(2399)
85 KOG4251|consensus 97.9 1.5E-05 3.3E-10 48.7 3.1 60 55-114 100-162 (362)
86 KOG2562|consensus 97.8 0.00017 3.7E-09 47.8 7.1 99 12-114 307-418 (493)
87 PF12763 EF-hand_4: Cytoskelet 97.8 0.0003 6.5E-09 37.9 6.8 63 16-85 10-72 (104)
88 KOG2562|consensus 97.8 6.6E-05 1.4E-09 49.6 4.7 85 22-113 284-372 (493)
89 smart00054 EFh EF-hand, calciu 97.7 0.00011 2.4E-09 29.2 3.4 26 58-83 2-27 (29)
90 KOG0046|consensus 97.7 0.00012 2.6E-09 49.2 4.9 59 55-114 18-79 (627)
91 smart00054 EFh EF-hand, calciu 97.5 0.00023 5E-09 28.2 3.0 28 17-44 1-28 (29)
92 KOG4666|consensus 97.4 8.2E-05 1.8E-09 47.3 1.5 60 55-114 258-318 (412)
93 KOG0038|consensus 97.3 0.0013 2.8E-08 37.4 5.5 57 57-113 72-129 (189)
94 KOG4065|consensus 97.3 0.00049 1.1E-08 37.4 3.4 55 60-114 71-139 (144)
95 KOG4347|consensus 97.2 0.0065 1.4E-07 42.2 9.0 57 56-113 555-611 (671)
96 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.00017 3.6E-09 39.5 1.1 60 15-80 53-112 (113)
97 PF09279 EF-hand_like: Phospho 97.1 0.00045 9.7E-09 35.6 2.3 56 58-114 2-63 (83)
98 PF09279 EF-hand_like: Phospho 96.9 0.0039 8.5E-08 32.0 4.5 65 17-84 1-69 (83)
99 KOG3555|consensus 96.8 0.0023 5E-08 41.3 3.8 59 53-115 247-305 (434)
100 KOG1029|consensus 96.7 0.0012 2.6E-08 46.7 2.1 57 57-115 196-252 (1118)
101 KOG0751|consensus 96.5 0.028 6.1E-07 38.3 7.4 98 15-112 107-236 (694)
102 KOG0169|consensus 96.5 0.037 8.1E-07 39.3 8.2 104 3-114 159-268 (746)
103 KOG1955|consensus 96.1 0.014 2.9E-07 39.8 4.3 61 53-115 228-288 (737)
104 KOG0046|consensus 95.8 0.083 1.8E-06 36.3 7.1 72 11-84 11-85 (627)
105 KOG2243|consensus 95.1 0.02 4.4E-07 43.8 2.8 53 61-114 4062-4114(5019)
106 KOG4065|consensus 95.0 0.19 4.1E-06 27.6 5.6 69 13-81 63-142 (144)
107 PLN02952 phosphoinositide phos 95.0 0.23 5.1E-06 35.0 7.3 70 29-101 13-84 (599)
108 KOG4347|consensus 94.8 0.098 2.1E-06 36.8 5.1 61 13-78 552-612 (671)
109 KOG0042|consensus 94.7 0.046 1E-06 37.9 3.3 59 56-114 593-651 (680)
110 PF05517 p25-alpha: p25-alpha 94.7 0.099 2.1E-06 30.3 4.3 47 68-114 14-63 (154)
111 KOG1265|consensus 94.6 1.3 2.9E-05 32.9 10.4 76 32-114 204-293 (1189)
112 KOG3555|consensus 94.5 0.12 2.5E-06 33.8 4.7 66 13-86 247-312 (434)
113 PF05042 Caleosin: Caleosin re 94.1 0.16 3.5E-06 29.9 4.3 22 91-112 95-116 (174)
114 PF14513 DAG_kinase_N: Diacylg 94.1 0.59 1.3E-05 26.6 6.5 36 69-104 45-81 (138)
115 KOG4578|consensus 94.0 0.065 1.4E-06 34.7 2.8 61 21-84 338-398 (421)
116 KOG1955|consensus 93.5 0.34 7.4E-06 33.4 5.5 61 18-84 233-293 (737)
117 KOG0169|consensus 93.4 0.2 4.3E-06 35.9 4.4 55 57-111 137-191 (746)
118 PF05042 Caleosin: Caleosin re 93.2 1 2.3E-05 26.6 7.4 69 13-82 93-164 (174)
119 PF08976 DUF1880: Domain of un 93.0 0.1 2.2E-06 28.6 2.1 33 13-45 4-36 (118)
120 KOG0035|consensus 92.8 0.58 1.3E-05 34.5 6.1 64 51-114 742-810 (890)
121 KOG2871|consensus 92.8 0.29 6.2E-06 32.4 4.2 60 55-114 308-368 (449)
122 KOG4578|consensus 92.5 0.056 1.2E-06 35.0 0.8 58 57-114 334-392 (421)
123 PF08726 EFhand_Ca_insen: Ca2+ 91.6 0.28 6.1E-06 24.4 2.6 28 55-83 5-32 (69)
124 KOG1707|consensus 91.5 1.8 3.9E-05 30.6 7.0 32 55-86 314-345 (625)
125 KOG0998|consensus 90.9 0.17 3.7E-06 37.1 2.0 60 54-115 281-340 (847)
126 KOG0035|consensus 90.6 1.7 3.7E-05 32.2 6.5 75 2-80 769-848 (890)
127 PF09068 EF-hand_2: EF hand; 88.9 2.7 6E-05 23.6 7.9 73 13-85 38-126 (127)
128 KOG1029|consensus 88.5 1.6 3.4E-05 32.0 5.0 65 14-84 193-257 (1118)
129 PF05517 p25-alpha: p25-alpha 88.3 1.6 3.5E-05 25.3 4.3 44 3-46 25-71 (154)
130 PF09069 EF-hand_3: EF-hand; 88.2 2.5 5.5E-05 22.3 4.6 45 56-101 3-58 (90)
131 KOG3866|consensus 88.1 0.46 9.9E-06 30.8 2.1 56 59-114 247-318 (442)
132 KOG3866|consensus 87.8 3.1 6.8E-05 27.2 5.6 75 10-84 238-324 (442)
133 PF02761 Cbl_N2: CBL proto-onc 87.4 2.8 6E-05 21.8 5.5 72 11-87 2-73 (85)
134 PLN02228 Phosphoinositide phos 86.1 6.6 0.00014 28.0 6.9 69 12-84 20-92 (567)
135 PF00404 Dockerin_1: Dockerin 85.9 1.3 2.8E-05 16.6 2.1 16 66-81 1-16 (21)
136 PF12174 RST: RCD1-SRO-TAF4 (R 85.6 3.2 6.9E-05 20.8 4.1 48 31-85 7-54 (70)
137 KOG1265|consensus 83.2 14 0.00031 28.0 7.6 70 15-84 220-299 (1189)
138 KOG0039|consensus 82.3 3.9 8.4E-05 29.5 4.7 73 30-113 2-82 (646)
139 KOG3449|consensus 81.7 6.6 0.00014 21.5 5.3 43 60-102 5-47 (112)
140 PLN02222 phosphoinositide phos 81.2 4.6 0.0001 28.8 4.6 69 12-84 21-90 (581)
141 PLN02228 Phosphoinositide phos 80.3 6.2 0.00013 28.1 5.0 58 55-114 23-86 (567)
142 PLN02952 phosphoinositide phos 79.7 21 0.00045 25.9 7.6 79 2-83 22-109 (599)
143 PF07879 PHB_acc_N: PHB/PHA ac 79.6 4.5 9.7E-05 19.8 3.0 38 63-100 10-57 (64)
144 PF07308 DUF1456: Protein of u 78.2 6.8 0.00015 19.5 4.4 21 4-24 21-41 (68)
145 PLN02222 phosphoinositide phos 77.5 16 0.00036 26.2 6.3 58 55-114 24-84 (581)
146 PF13623 SurA_N_2: SurA N-term 77.3 6.7 0.00015 22.6 3.8 14 68-81 131-144 (145)
147 COG3763 Uncharacterized protei 76.6 7.8 0.00017 19.4 4.1 44 58-102 25-68 (71)
148 PRK00523 hypothetical protein; 76.1 8.3 0.00018 19.4 4.7 43 58-101 26-68 (72)
149 PTZ00373 60S Acidic ribosomal 76.0 11 0.00024 20.8 4.8 42 61-102 8-49 (112)
150 PF03672 UPF0154: Uncharacteri 75.2 8.3 0.00018 19.0 4.1 42 59-101 19-60 (64)
151 PF12174 RST: RCD1-SRO-TAF4 (R 74.5 9.1 0.0002 19.1 4.3 44 4-47 13-56 (70)
152 PF11116 DUF2624: Protein of u 73.7 11 0.00024 19.7 7.7 64 1-65 19-82 (85)
153 PF11829 DUF3349: Protein of u 73.7 12 0.00026 20.0 4.0 40 57-96 40-80 (96)
154 PF13608 Potyvirid-P3: Protein 73.6 4.9 0.00011 27.7 3.0 39 62-100 357-397 (445)
155 PLN02230 phosphoinositide phos 72.5 34 0.00074 24.8 7.0 69 14-84 27-102 (598)
156 TIGR01848 PHA_reg_PhaR polyhyd 71.3 8.3 0.00018 21.0 3.0 17 26-42 13-29 (107)
157 KOG4070|consensus 70.4 18 0.00038 21.2 4.3 92 10-101 6-107 (180)
158 PF08461 HTH_12: Ribonuclease 70.3 10 0.00022 18.6 3.1 37 69-105 10-46 (66)
159 KOG4004|consensus 70.0 1.5 3.3E-05 26.6 0.1 27 55-81 221-247 (259)
160 PRK01844 hypothetical protein; 69.3 13 0.00028 18.7 4.6 43 58-101 25-67 (72)
161 PF01885 PTS_2-RNA: RNA 2'-pho 68.8 12 0.00027 22.5 3.7 37 66-102 26-62 (186)
162 TIGR02675 tape_meas_nterm tape 68.7 14 0.00029 18.7 3.6 30 15-44 12-42 (75)
163 PF02761 Cbl_N2: CBL proto-onc 67.9 12 0.00025 19.6 3.0 45 70-114 20-64 (85)
164 cd05833 Ribosomal_P2 Ribosomal 67.2 19 0.00041 19.8 4.8 42 61-102 6-47 (109)
165 PLN02230 phosphoinositide phos 66.9 31 0.00068 25.0 5.8 46 55-101 28-76 (598)
166 PF03979 Sigma70_r1_1: Sigma-7 66.5 9.2 0.0002 19.6 2.6 32 69-102 18-49 (82)
167 COG5502 Uncharacterized conser 64.4 25 0.00053 20.1 6.2 53 29-85 72-124 (135)
168 COG2036 HHT1 Histones H3 and H 64.3 20 0.00043 19.0 5.7 75 3-88 10-87 (91)
169 TIGR02029 AcsF magnesium-proto 64.1 39 0.00084 22.4 5.4 91 5-104 24-116 (337)
170 PRK00819 RNA 2'-phosphotransfe 63.4 24 0.00052 21.2 4.2 36 67-102 28-63 (179)
171 PF09336 Vps4_C: Vps4 C termin 62.1 17 0.00038 17.6 3.2 26 72-97 29-54 (62)
172 PF15144 DUF4576: Domain of un 61.6 8.7 0.00019 19.6 1.8 44 68-112 36-79 (88)
173 KOG0042|consensus 59.5 28 0.0006 25.2 4.4 78 9-90 583-663 (680)
174 KOG2243|consensus 59.4 32 0.00069 28.2 5.0 58 20-82 4061-4118(5019)
175 KOG0998|consensus 58.5 14 0.0003 27.8 3.1 55 58-114 13-67 (847)
176 COG3860 Uncharacterized protei 58.1 26 0.00055 18.2 3.1 17 10-26 44-60 (89)
177 PF07492 Trehalase_Ca-bi: Neut 56.4 8 0.00017 15.8 1.0 19 95-113 2-20 (30)
178 PLN00138 large subunit ribosom 55.9 34 0.00073 18.9 4.8 42 61-102 6-47 (113)
179 CHL00185 ycf59 magnesium-proto 55.9 59 0.0013 21.7 6.2 91 5-104 30-122 (351)
180 PF08349 DUF1722: Protein of u 55.2 34 0.00074 18.8 5.1 20 65-84 78-97 (117)
181 PF02885 Glycos_trans_3N: Glyc 54.0 26 0.00056 17.0 6.7 38 2-42 2-41 (66)
182 PF10025 DUF2267: Uncharacteri 53.9 37 0.00081 18.8 4.5 63 3-65 26-101 (125)
183 KOG4286|consensus 53.6 13 0.00028 27.6 2.2 49 57-105 471-519 (966)
184 KOG1707|consensus 53.0 76 0.0016 23.1 5.7 48 54-101 193-241 (625)
185 PF06648 DUF1160: Protein of u 52.4 41 0.0009 18.9 4.5 45 54-101 35-80 (122)
186 PRK13654 magnesium-protoporphy 52.4 70 0.0015 21.5 6.1 91 5-104 34-126 (355)
187 COG2818 Tag 3-methyladenine DN 52.3 21 0.00046 21.6 2.7 33 55-87 54-86 (188)
188 KOG4403|consensus 52.0 10 0.00022 26.1 1.4 32 16-47 68-99 (575)
189 TIGR01639 P_fal_TIGR01639 Plas 51.2 29 0.00062 16.7 3.9 29 72-100 9-37 (61)
190 COG4359 Uncharacterized conser 51.0 54 0.0012 20.1 4.2 49 29-87 10-59 (220)
191 PRK09389 (R)-citramalate synth 50.6 54 0.0012 23.1 4.8 45 2-46 323-369 (488)
192 PF11422 IBP39: Initiator bind 50.0 56 0.0012 19.7 7.5 79 18-98 21-102 (181)
193 PHA02105 hypothetical protein 49.7 30 0.00066 16.6 2.8 42 73-114 5-51 (68)
194 PLN02223 phosphoinositide phos 48.5 53 0.0012 23.5 4.4 26 56-82 16-41 (537)
195 PF13624 SurA_N_3: SurA N-term 48.3 34 0.00074 19.4 3.2 40 4-43 91-131 (154)
196 PF09373 PMBR: Pseudomurein-bi 48.1 23 0.00049 14.7 2.1 15 70-84 2-16 (33)
197 PF06207 DUF1002: Protein of u 47.9 55 0.0012 20.6 4.1 36 5-40 184-219 (225)
198 PF07862 Nif11: Nitrogen fixat 47.5 21 0.00046 16.1 1.8 12 5-16 35-46 (49)
199 cd00086 homeodomain Homeodomai 47.4 30 0.00064 15.8 5.9 39 55-100 12-50 (59)
200 PF04558 tRNA_synt_1c_R1: Glut 46.5 16 0.00035 21.6 1.6 45 56-101 85-129 (164)
201 KOG2301|consensus 45.7 23 0.00049 28.8 2.6 36 53-88 1414-1449(1592)
202 cd01047 ACSF Aerobic Cyclase S 45.7 88 0.0019 20.7 6.2 91 5-104 14-106 (323)
203 PF06384 ICAT: Beta-catenin-in 45.7 24 0.00052 18.1 1.9 20 1-20 21-40 (78)
204 cd00076 H4 Histone H4, one of 45.1 46 0.001 17.4 8.4 67 12-89 13-82 (85)
205 KOG0506|consensus 44.8 1.1E+02 0.0025 21.8 5.8 72 2-73 108-198 (622)
206 cd07357 HN_L-whirlin_R2_like S 44.5 46 0.001 17.2 3.6 36 13-48 16-51 (81)
207 PF10437 Lip_prot_lig_C: Bacte 43.9 46 0.00099 17.0 4.3 32 10-41 53-85 (86)
208 PF08414 NADPH_Ox: Respiratory 43.7 54 0.0012 17.7 6.6 62 15-85 29-93 (100)
209 KOG1785|consensus 43.7 40 0.00087 23.2 3.2 69 11-84 170-238 (563)
210 PF14277 DUF4364: Domain of un 43.4 70 0.0015 18.9 4.8 39 4-47 7-45 (163)
211 KOG4286|consensus 43.2 72 0.0016 24.1 4.5 77 18-99 472-561 (966)
212 PF01316 Arg_repressor: Argini 42.9 45 0.00098 16.6 2.7 25 1-25 24-48 (70)
213 PF12631 GTPase_Cys_C: Catalyt 42.5 46 0.00099 16.5 3.9 46 56-101 23-72 (73)
214 cd07313 terB_like_2 tellurium 42.4 53 0.0011 17.2 7.5 62 13-79 34-95 (104)
215 PF07499 RuvA_C: RuvA, C-termi 42.3 36 0.00077 15.3 3.4 35 2-40 6-40 (47)
216 PF07643 DUF1598: Protein of u 41.7 22 0.00047 18.5 1.4 58 25-82 3-60 (84)
217 PF01479 S4: S4 domain; Inter 41.3 36 0.00078 15.0 3.3 23 2-24 3-25 (48)
218 KOG1785|consensus 41.2 1.2E+02 0.0026 21.1 6.0 77 2-85 196-275 (563)
219 KOG0506|consensus 41.1 66 0.0014 22.9 3.9 42 60-101 90-131 (622)
220 PLN03228 methylthioalkylmalate 40.8 76 0.0017 22.6 4.3 43 2-44 432-476 (503)
221 KOG1954|consensus 40.7 26 0.00056 24.1 2.0 44 70-115 457-500 (532)
222 PF01325 Fe_dep_repress: Iron 40.3 45 0.00098 15.9 4.4 52 54-114 6-57 (60)
223 PF01023 S_100: S-100/ICaBP ty 39.5 40 0.00087 15.0 4.1 30 55-84 5-36 (44)
224 cd04411 Ribosomal_P1_P2_L12p R 38.9 68 0.0015 17.5 5.9 29 73-101 17-45 (105)
225 COG2058 RPP1A Ribosomal protei 38.7 70 0.0015 17.6 4.5 31 72-102 16-46 (109)
226 PTZ00015 histone H4; Provision 38.2 69 0.0015 17.4 8.5 69 12-88 30-98 (102)
227 PF08044 DUF1707: Domain of un 38.1 48 0.001 15.5 3.1 30 69-98 20-49 (53)
228 PF12949 HeH: HeH/LEM domain; 38.0 28 0.00061 14.8 1.3 11 2-12 9-19 (35)
229 PF02337 Gag_p10: Retroviral G 37.7 48 0.001 17.5 2.4 23 3-25 15-37 (90)
230 PHA00003 B internal scaffoldin 37.6 58 0.0013 17.9 2.7 36 5-41 74-109 (120)
231 PRK11858 aksA trans-homoaconit 37.6 1.3E+02 0.0028 20.4 5.2 43 3-45 326-371 (378)
232 PLN00035 histone H4; Provision 36.6 75 0.0016 17.3 7.5 65 13-88 30-97 (103)
233 PF10982 DUF2789: Protein of u 36.2 64 0.0014 16.4 3.3 29 2-30 8-36 (74)
234 PF02269 TFIID-18kDa: Transcri 34.9 73 0.0016 16.8 2.9 28 57-84 39-66 (93)
235 PRK06402 rpl12p 50S ribosomal 34.1 85 0.0018 17.2 5.0 30 72-101 16-45 (106)
236 PF07531 TAFH: NHR1 homology t 34.0 63 0.0014 17.4 2.5 31 16-49 27-57 (96)
237 PF00690 Cation_ATPase_N: Cati 32.8 66 0.0014 15.5 3.4 31 59-89 7-37 (69)
238 KOG4301|consensus 32.7 1.6E+02 0.0035 20.0 5.7 60 20-84 114-173 (434)
239 PF00046 Homeobox: Homeobox do 32.4 58 0.0013 14.8 4.6 38 56-100 13-50 (57)
240 KOG3442|consensus 32.4 96 0.0021 17.6 3.1 42 30-72 53-94 (132)
241 PF04876 Tenui_NCP: Tenuivirus 31.8 1.1E+02 0.0025 18.0 7.5 55 18-84 85-139 (175)
242 COG4086 Predicted secreted pro 31.2 1.6E+02 0.0034 19.4 5.5 41 4-44 221-261 (299)
243 PF07128 DUF1380: Protein of u 30.6 1.1E+02 0.0025 17.6 3.4 31 73-103 27-57 (139)
244 PF09312 SurA_N: SurA N-termin 30.5 70 0.0015 17.5 2.5 36 6-43 60-95 (118)
245 TIGR00135 gatC glutamyl-tRNA(G 30.2 89 0.0019 16.3 4.1 22 74-95 2-23 (93)
246 TIGR00973 leuA_bact 2-isopropy 30.1 1.9E+02 0.0041 20.6 4.9 45 2-46 334-380 (494)
247 COG0541 Ffh Signal recognition 30.0 2E+02 0.0044 20.3 6.8 39 6-47 303-341 (451)
248 KOG2871|consensus 29.9 43 0.00093 22.8 1.7 60 15-77 308-367 (449)
249 TIGR03573 WbuX N-acetyl sugar 29.7 1.4E+02 0.0031 19.9 4.1 36 69-104 299-334 (343)
250 PHA03102 Small T antigen; Revi 29.5 1.3E+02 0.0027 17.7 3.5 31 1-31 3-41 (153)
251 PF09435 DUF2015: Fungal prote 29.4 78 0.0017 18.0 2.4 21 15-41 87-107 (128)
252 PF02037 SAP: SAP domain; Int 29.2 56 0.0012 13.6 2.1 18 72-89 3-20 (35)
253 PRK14981 DNA-directed RNA poly 29.0 1.1E+02 0.0023 16.8 3.9 27 74-100 80-106 (112)
254 PF14237 DUF4339: Domain of un 28.9 55 0.0012 14.4 1.6 19 66-84 7-25 (45)
255 TIGR02660 nifV_homocitr homoci 28.8 1.3E+02 0.0028 20.3 3.8 38 3-40 323-363 (365)
256 PLN02508 magnesium-protoporphy 28.8 1.9E+02 0.0041 19.6 6.8 86 10-104 35-122 (357)
257 PRK10788 periplasmic folding c 28.7 2.3E+02 0.0051 20.6 11.3 95 3-101 102-221 (623)
258 PRK00915 2-isopropylmalate syn 28.4 2.2E+02 0.0047 20.4 5.0 45 2-46 337-383 (513)
259 TIGR00959 ffh signal recogniti 28.3 2.1E+02 0.0046 20.0 7.8 33 13-48 310-342 (428)
260 PF12238 MSA-2c: Merozoite sur 28.2 1.5E+02 0.0034 18.4 4.2 33 53-85 81-114 (205)
261 PF12767 SAGA-Tad1: Transcript 28.1 1.6E+02 0.0036 18.6 4.4 67 28-101 4-74 (252)
262 PLN02321 2-isopropylmalate syn 28.0 1.7E+02 0.0037 21.6 4.5 44 2-45 433-478 (632)
263 PF09107 SelB-wing_3: Elongati 27.9 75 0.0016 14.6 2.6 29 30-67 8-36 (50)
264 PF10668 Phage_terminase: Phag 27.7 85 0.0018 15.2 2.2 33 60-98 11-43 (60)
265 PF13331 DUF4093: Domain of un 27.5 1E+02 0.0022 16.1 3.4 76 13-98 7-86 (87)
266 smart00513 SAP Putative DNA-bi 26.9 61 0.0013 13.3 2.6 18 72-89 3-20 (35)
267 PF14328 DUF4385: Domain of un 26.4 71 0.0015 18.5 2.0 60 24-83 20-81 (145)
268 PF12486 DUF3702: ImpA domain 26.2 1.4E+02 0.0031 17.4 4.3 27 58-84 71-97 (148)
269 PF03847 TFIID_20kDa: Transcri 26.2 97 0.0021 15.4 5.7 63 15-84 2-64 (68)
270 PLN02291 phospho-2-dehydro-3-d 26.1 72 0.0016 22.5 2.3 27 9-35 306-333 (474)
271 COG0721 GatC Asp-tRNAAsn/Glu-t 25.9 1.2E+02 0.0025 16.2 3.9 25 72-96 2-26 (96)
272 TIGR01358 DAHP_synth_II 3-deox 25.6 74 0.0016 22.2 2.3 27 9-35 286-313 (443)
273 PF08671 SinI: Anti-repressor 25.1 67 0.0014 13.1 1.7 11 73-83 17-27 (30)
274 cd08313 Death_TNFR1 Death doma 24.9 1.1E+02 0.0024 15.7 3.3 26 72-99 8-33 (80)
275 COG5562 Phage envelope protein 24.6 80 0.0017 18.2 2.0 17 28-44 84-100 (137)
276 COG5083 SMP2 Uncharacterized p 24.6 68 0.0015 22.6 2.0 38 68-105 381-419 (580)
277 PF05499 DMAP1: DNA methyltran 24.6 1.7E+02 0.0037 17.7 3.7 57 3-68 111-170 (176)
278 PRK10353 3-methyl-adenine DNA 24.5 64 0.0014 19.6 1.7 32 55-86 53-84 (187)
279 PF00427 PBS_linker_poly: Phyc 24.5 1.5E+02 0.0032 17.0 4.1 54 29-84 41-98 (131)
280 PRK00034 gatC aspartyl/glutamy 24.4 1.2E+02 0.0026 15.8 4.1 24 73-96 3-26 (95)
281 cd00171 Sec7 Sec7 domain; Doma 24.4 1.7E+02 0.0037 17.6 10.1 38 65-102 142-181 (185)
282 PF09061 Stirrup: Stirrup; In 24.3 55 0.0012 16.1 1.2 29 71-99 48-76 (79)
283 cd03521 Link_domain_KIAA0527_l 24.3 1.3E+02 0.0028 16.1 3.3 35 66-100 7-42 (95)
284 COG1859 KptA RNA:NAD 2'-phosph 23.9 1.9E+02 0.0042 18.1 4.0 61 29-102 29-89 (211)
285 KOG4629|consensus 23.6 1.3E+02 0.0028 22.6 3.3 52 56-114 404-455 (714)
286 KOG1457|consensus 23.4 1.2E+02 0.0027 19.3 2.7 22 5-26 214-235 (284)
287 smart00874 B5 tRNA synthetase 23.1 1.1E+02 0.0023 14.8 3.3 23 4-26 10-32 (71)
288 KOG4403|consensus 23.1 2.8E+02 0.0061 19.7 6.7 56 29-84 41-96 (575)
289 PRK00441 argR arginine repress 22.9 1.7E+02 0.0037 17.0 4.8 42 69-110 15-60 (149)
290 PF13829 DUF4191: Domain of un 22.7 2.1E+02 0.0046 18.1 3.8 39 63-101 158-196 (224)
291 PF06226 DUF1007: Protein of u 22.3 1.3E+02 0.0028 18.6 2.8 25 61-85 55-79 (212)
292 PRK04280 arginine repressor; P 22.1 1.1E+02 0.0024 17.8 2.3 32 1-32 23-58 (148)
293 PF14069 SpoVIF: Stage VI spor 22.1 1.3E+02 0.0029 15.5 4.9 13 13-25 10-22 (79)
294 PF08006 DUF1700: Protein of u 21.8 1.9E+02 0.0041 17.1 6.1 15 34-48 2-16 (181)
295 PLN02223 phosphoinositide phos 21.6 3.3E+02 0.0071 19.9 6.5 71 13-84 13-92 (537)
296 cd08814 DED_Caspase_10_repeat2 21.6 1.2E+02 0.0025 15.6 2.1 20 78-97 4-23 (79)
297 PRK08332 ribonucleotide-diphos 21.5 1.5E+02 0.0032 25.0 3.4 45 2-46 607-656 (1740)
298 PF04022 Staphylcoagulse: Stap 21.4 47 0.001 12.9 0.5 8 104-111 18-25 (27)
299 PF06144 DNA_pol3_delta: DNA p 21.3 1.3E+02 0.0029 17.2 2.6 21 5-25 136-156 (172)
300 PF01474 DAHP_synth_2: Class-I 21.1 80 0.0017 22.0 1.8 27 9-35 289-316 (439)
301 cd05831 Ribosomal_P1 Ribosomal 21.1 1.6E+02 0.0034 16.0 4.4 33 69-101 14-46 (103)
302 KOG2623|consensus 21.0 3.1E+02 0.0066 19.3 7.4 70 15-84 318-387 (467)
303 COG4103 Uncharacterized protei 20.9 1.9E+02 0.0042 16.9 7.4 70 10-84 60-129 (148)
304 PTZ00315 2'-phosphotransferase 20.9 2.5E+02 0.0054 20.7 4.1 38 65-102 398-435 (582)
305 KOG0871|consensus 20.9 2E+02 0.0042 17.0 8.1 83 11-100 11-94 (156)
306 cd08780 Death_TRADD Death Doma 20.9 1.5E+02 0.0033 15.7 5.6 16 73-88 66-81 (90)
307 cd08341 DED_Caspase_10_repeat1 20.8 1.1E+02 0.0024 15.8 1.9 21 78-98 3-23 (82)
308 PF05383 La: La domain; Inter 20.7 1.2E+02 0.0027 14.5 2.3 18 63-80 22-39 (61)
309 COG5394 Uncharacterized protei 20.6 2.1E+02 0.0045 17.2 3.2 13 30-42 26-38 (193)
310 PF04282 DUF438: Family of unk 20.5 1.4E+02 0.003 15.1 6.6 37 2-42 2-38 (71)
311 PF08585 DUF1767: Domain of un 20.4 1.4E+02 0.0031 15.3 2.6 22 4-25 2-23 (90)
312 PF08355 EF_assoc_1: EF hand a 20.4 1.4E+02 0.0031 15.2 2.3 22 26-47 12-33 (76)
313 PF14848 HU-DNA_bdg: DNA-bindi 20.4 1.8E+02 0.0038 16.2 4.2 31 70-100 26-56 (124)
314 TIGR00624 tag DNA-3-methyladen 20.3 1.4E+02 0.0029 18.1 2.5 33 55-87 52-84 (179)
315 cd01612 APG12_C Ubiquitin-like 20.2 1.5E+02 0.0033 15.4 3.0 17 31-47 24-40 (87)
316 cd06404 PB1_aPKC PB1 domain is 20.1 1.3E+02 0.0028 15.7 2.1 24 89-112 56-79 (83)
317 cd00325 chitinase_glyco_hydro_ 20.1 2.5E+02 0.0054 17.8 6.0 33 14-46 2-37 (230)
318 PF11363 DUF3164: Protein of u 20.0 2.3E+02 0.005 17.4 6.0 21 63-83 126-146 (195)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=3.6e-25 Score=125.41 Aligned_cols=111 Identities=34% Similarity=0.656 Sum_probs=104.0
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
||..+++.+|..++++++..|+..++. +.+.|+|.+|+.++....... ...+.++.+|+.||++++|+|+..++++
T Consensus 41 el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~---~~~Eel~~aF~~fD~d~dG~Is~~eL~~ 116 (160)
T COG5126 41 ELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG---DKEEELREAFKLFDKDHDGYISIGELRR 116 (160)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC---CcHHHHHHHHHHhCCCCCceecHHHHHH
Confidence 578899999999999999999999998 889999999999999988653 3378999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 81 ILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
+++.+|..+++++++.+++.++.|++|.|+|++|.
T Consensus 117 vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~ 151 (160)
T COG5126 117 VLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151 (160)
T ss_pred HHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHH
Confidence 99999999999999999999999999999999883
No 2
>KOG0027|consensus
Probab=99.92 E-value=1.5e-24 Score=124.19 Aligned_cols=115 Identities=43% Similarity=0.742 Sum_probs=104.8
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchH-HHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDE-AMQKELREAFRLYDKDGNGYIPTSCLK 79 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~ 79 (115)
||..+++++|..+++.++..++..+|.+++|.|++.+|+.++.......... .....++.+|+.||++++|+|+..+|+
T Consensus 29 el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~ 108 (151)
T KOG0027|consen 29 ELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELK 108 (151)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHH
Confidence 5789999999999999999999999999999999999999998877543322 134589999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 80 EILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.+|..+|...+.+++..++...|.|++|.|+|++|.
T Consensus 109 ~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~ 144 (151)
T KOG0027|consen 109 KVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFV 144 (151)
T ss_pred HHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHH
Confidence 999999999999999999999999999999999873
No 3
>KOG0028|consensus
Probab=99.85 E-value=1.9e-20 Score=104.74 Aligned_cols=111 Identities=34% Similarity=0.572 Sum_probs=103.4
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
||+-+++.+|..+..+++..++..+|+++.|.|++++|...+........ ..+.+..+|+.+|-+++|.|+..+|++
T Consensus 54 EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d---t~eEi~~afrl~D~D~~Gkis~~~lkr 130 (172)
T KOG0028|consen 54 ELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD---TKEEIKKAFRLFDDDKTGKISQRNLKR 130 (172)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC---cHHHHHHHHHcccccCCCCcCHHHHHH
Confidence 57788999999999999999999999999999999999999877765543 378899999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 81 ILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+...+|.+++++++.+++..+|.+++|-|+-+||
T Consensus 131 vakeLgenltD~El~eMIeEAd~d~dgevneeEF 164 (172)
T KOG0028|consen 131 VAKELGENLTDEELMEMIEEADRDGDGEVNEEEF 164 (172)
T ss_pred HHHHhCccccHHHHHHHHHHhcccccccccHHHH
Confidence 9999999999999999999999999999999887
No 4
>PTZ00183 centrin; Provisional
Probab=99.85 E-value=5.8e-20 Score=105.76 Aligned_cols=111 Identities=35% Similarity=0.606 Sum_probs=99.2
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
||..+++.+|..++...+..+++.+|.+++|.|++.+|+..+........ ....++.+|..+|.+++|.|+..+|..
T Consensus 38 e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~---~~~~l~~~F~~~D~~~~G~i~~~e~~~ 114 (158)
T PTZ00183 38 ELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD---PREEILKAFRLFDDDKTGKISLKNLKR 114 (158)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC---cHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 46778888898889999999999999999999999999998876543221 246788999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 81 ILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
++..+|..++..++..++..+|.+++|.|++++|
T Consensus 115 ~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef 148 (158)
T PTZ00183 115 VAKELGETITDEELQEMIDEADRNGDGEISEEEF 148 (158)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 9999999999999999999999999999999987
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.84 E-value=6.5e-20 Score=104.53 Aligned_cols=111 Identities=37% Similarity=0.739 Sum_probs=99.2
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
||..++..++..++..++..+++.++.+++|.|++.+|+.++....... .....+..+|..+|.+++|.|+..++..
T Consensus 32 e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~---~~~~~~~~~F~~~D~~~~g~i~~~e~~~ 108 (149)
T PTZ00184 32 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT---DSEEEIKEAFKVFDRDGNGFISAAELRH 108 (149)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC---cHHHHHHHHHHhhCCCCCCeEeHHHHHH
Confidence 4677888889889999999999999999999999999999988664322 1245788999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 81 ILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
++..++..++.+++..++..+|.+++|.|+|+||
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 142 (149)
T PTZ00184 109 VMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142 (149)
T ss_pred HHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHH
Confidence 9999999999999999999999999999999988
No 6
>KOG0030|consensus
Probab=99.78 E-value=1.3e-18 Score=95.31 Aligned_cols=111 Identities=26% Similarity=0.530 Sum_probs=96.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDAD--KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLK 79 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 79 (115)
+..+||.+|..||.+++.+....+.++ +-.+++|++|+.+++.......+ ...+.+-+..++||++++|.|...+++
T Consensus 33 ~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q-~t~edfvegLrvFDkeg~G~i~~aeLR 111 (152)
T KOG0030|consen 33 VGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ-GTYEDFVEGLRVFDKEGNGTIMGAELR 111 (152)
T ss_pred HHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc-CcHHHHHHHHHhhcccCCcceeHHHHH
Confidence 567899999999999999999998776 45789999999999888755332 234566678999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 80 EILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
++|..+|..+++++++.++... .|.+|+|+|+.|
T Consensus 112 hvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~f 145 (152)
T KOG0030|consen 112 HVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAF 145 (152)
T ss_pred HHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHH
Confidence 9999999999999999999876 478999999987
No 7
>KOG0037|consensus
Probab=99.76 E-value=2e-17 Score=97.10 Aligned_cols=104 Identities=30% Similarity=0.456 Sum_probs=93.6
Q ss_pred CHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy12124 1 MVADILRLM-GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLK 79 (115)
Q Consensus 1 el~~~l~~l-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 79 (115)
||+++|... .-+++.+.+..|+..+|.+..|+|++.||..++..+ ..++.+|+.||.|++|.|+..||+
T Consensus 78 eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----------~~Wr~vF~~~D~D~SG~I~~sEL~ 147 (221)
T KOG0037|consen 78 ELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----------NQWRNVFRTYDRDRSGTIDSSELR 147 (221)
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----------HHHHHHHHhcccCCCCcccHHHHH
Confidence 455666544 356889999999999999999999999999997666 679999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 80 EILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.+|..+|..++++-.+.+++.+|....|.|.+++|
T Consensus 148 ~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~F 182 (221)
T KOG0037|consen 148 QALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDF 182 (221)
T ss_pred HHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHH
Confidence 99999999999999999999999877999999887
No 8
>KOG0031|consensus
Probab=99.75 E-value=3.2e-17 Score=91.34 Aligned_cols=107 Identities=28% Similarity=0.527 Sum_probs=99.0
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
+|+..+.++|..++++++..|+.. ..|-|+|.-|+.++...+....+ .+.+..+|..||.+++|.|..+.++.
T Consensus 53 DL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdp---e~~I~~AF~~FD~~~~G~I~~d~lre 125 (171)
T KOG0031|consen 53 DLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDP---EEVILNAFKTFDDEGSGKIDEDYLRE 125 (171)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCH---HHHHHHHHHhcCccCCCccCHHHHHH
Confidence 478899999999999999999977 47899999999999998877654 77899999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 81 ILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+|...|..+++++++.++..+-.|..|.++|..|
T Consensus 126 ~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~ 159 (171)
T KOG0031|consen 126 LLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAF 159 (171)
T ss_pred HHHHhcccCCHHHHHHHHHhCCcccCCceeHHHH
Confidence 9999999999999999999999999999999876
No 9
>KOG0044|consensus
Probab=99.72 E-value=8.9e-17 Score=94.21 Aligned_cols=109 Identities=23% Similarity=0.428 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCC-CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 2 VADILRLMGQPF-NKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 2 l~~~l~~l~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
++.+++++...- +..-+..+|+.+|.+++|.|++.||+.+++.+.+.. ..+.++.+|+.||.+++|+|++.|+..
T Consensus 49 F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt----~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 49 FREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT----LEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc----HHHHhhhhheeecCCCCceEcHHHHHH
Confidence 566777776533 355678899999999999999999999999998753 357788889999999999999999999
Q ss_pred HHHHh----CC-------CCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 81 ILREL----DD-------QLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 81 ~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
++.++ +. ....+.+..+|+.+|.|+||.|+++||
T Consensus 125 iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef 169 (193)
T KOG0044|consen 125 IVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEF 169 (193)
T ss_pred HHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHH
Confidence 99874 21 124566889999999999999999987
No 10
>KOG0034|consensus
Probab=99.67 E-value=6.4e-16 Score=90.52 Aligned_cols=95 Identities=37% Similarity=0.694 Sum_probs=79.2
Q ss_pred HHHHHHHhCCCCCCc-ccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCC--HH-
Q psy12124 18 LDELIEEVDADKSGR-LEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLT--NE- 92 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~~- 92 (115)
..++++.++.+++|. |++.+|+..+......... ..+++-+|++||.+++|+|+++++.+++..+ +...+ ++
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~---~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~ 144 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK---REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQ 144 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH---HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHH
Confidence 467788888888877 9999999999988876432 4689999999999999999999999999885 43444 33
Q ss_pred ---HHHHHHHhhCCCCCcceeccCCC
Q psy12124 93 ---ELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 93 ---~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.++.++..+|.|+||.|+++||+
T Consensus 145 ~~~i~d~t~~e~D~d~DG~IsfeEf~ 170 (187)
T KOG0034|consen 145 LEDIVDKTFEEADTDGDGKISFEEFC 170 (187)
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 36779999999999999999985
No 11
>KOG0036|consensus
Probab=99.63 E-value=8.1e-15 Score=93.20 Aligned_cols=104 Identities=25% Similarity=0.425 Sum_probs=94.6
Q ss_pred HHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 2 VADILRLMGQP-FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 2 l~~~l~~l~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
+.+.+.++..+ +...-.+.+++.+|.+.+|.++|++|...+... +.++..+|..+|.+++|.|+..|+.+
T Consensus 36 l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~---------E~~l~~~F~~iD~~hdG~i~~~Ei~~ 106 (463)
T KOG0036|consen 36 LEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK---------ELELYRIFQSIDLEHDGKIDPNEIWR 106 (463)
T ss_pred HHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh---------HHHHHHHHhhhccccCCccCHHHHHH
Confidence 44556777666 677889999999999999999999999998766 56788999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 81 ILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.|+.+|.+++++++..+++..|+++++.|+++||
T Consensus 107 ~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 107 YLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred HHHHhCCccCHHHHHHHHHHhccCCCeeeccHHH
Confidence 9999999999999999999999999999999986
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=1.4e-14 Score=75.64 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCcceeccCCC
Q psy12124 54 MQKELREAFRLYDK-DGNGYIPTSCLKEILRE-LDDQLTN-EELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 54 ~~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
....++.+|..||+ +++|+|+..||+.++.. +|..++. ++++.++...|.|++|.|+|+||.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence 35678899999999 99999999999999999 8887888 899999999999999999999983
No 13
>KOG0044|consensus
Probab=99.53 E-value=1.2e-13 Score=81.12 Aligned_cols=101 Identities=26% Similarity=0.339 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC
Q psy12124 11 QPFNKKILDELIEEVDAD-KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQL 89 (115)
Q Consensus 11 ~~~~~~~~~~l~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 89 (115)
-..+..+++.+++.+-.+ ++|.++..+|..++..+.....+ ......+|+.||.+++|.|++.||..++.......
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~---~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt 97 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDA---SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT 97 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCH---HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc
Confidence 356788999999999776 48999999999999998864332 56678899999999999999999999999988888
Q ss_pred CHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 90 TNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 90 ~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.++.++.+|+.||.|++|+|+++|+
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Em 122 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEM 122 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHH
Confidence 8999999999999999999999874
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=1.9e-14 Score=71.54 Aligned_cols=57 Identities=42% Similarity=0.845 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHhhCCCCCcceeccCC
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEE----LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~eF 114 (115)
++.+|..+|.+++|+|+..|+..++..++...+++. +..++..+|.|++|.|+++||
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef 62 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEF 62 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHH
Confidence 556777777777777777777777777765554433 344477777777777777766
No 15
>KOG0027|consensus
Probab=99.51 E-value=1.4e-13 Score=78.91 Aligned_cols=96 Identities=23% Similarity=0.375 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC-----
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQL----- 89 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----- 89 (115)
..++.+.|..+|.+++|+|+..++..++...... +....+..++..+|.+++|.|++.+|..++...+...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~----~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN----PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 4678999999999999999999999998877654 3367899999999999999999999999998865433
Q ss_pred CHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 90 TNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 90 ~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+.+++..+|+.+|.|++|.|+..|+
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el 107 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASEL 107 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHH
Confidence 3459999999999999999998875
No 16
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=9.2e-13 Score=75.75 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEE 93 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~ 93 (115)
..++..+|..+|++++|.|+..+|..++...... .....+..+|..+|.+++|.|+..+|..++... ......+.
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~----~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 91 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE----PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE 91 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC----CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH
Confidence 3567777888999999999999999998755321 114568899999999999999999999988764 34566788
Q ss_pred HHHHHHhhCCCCCcceeccCC
Q psy12124 94 LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 94 ~~~~~~~~d~~~~g~i~~~eF 114 (115)
+..+|..+|.+++|.|+.+||
T Consensus 92 l~~~F~~~D~~~~G~i~~~e~ 112 (158)
T PTZ00183 92 ILKAFRLFDDDKTGKISLKNL 112 (158)
T ss_pred HHHHHHHhCCCCCCcCcHHHH
Confidence 999999999999999998876
No 17
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.48 E-value=1.3e-12 Score=74.62 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=78.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHH
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEEL 94 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~ 94 (115)
.++++-|..+|++++|.|+..++..++..+. .. +....+..++..+|. +.+.|++.+|..++... ...-+.+++
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~---~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel 94 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-FN---PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CC---CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHH
Confidence 3455566667999999999999999987433 32 226788999999999 99999999999999874 456679999
Q ss_pred HHHHHhhCCCCCcceeccCC
Q psy12124 95 DGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 95 ~~~~~~~d~~~~g~i~~~eF 114 (115)
..+|+.+|.|++|+|+..+.
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL 114 (160)
T COG5126 95 REAFKLFDKDHDGYISIGEL 114 (160)
T ss_pred HHHHHHhCCCCCceecHHHH
Confidence 99999999999999998753
No 18
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.47 E-value=2.2e-13 Score=71.15 Aligned_cols=61 Identities=30% Similarity=0.556 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 54 MQKELREAFRLYD-KDGNG-YIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 54 ~~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
....++.+|..|| ++++| .|+..+|+.+|.. +|...++++++.++..+|.|++|+|+|++|
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF 73 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEF 73 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 3567889999998 79999 5999999999999 888889999999999999999999999988
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=2e-12 Score=64.15 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=57.6
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
++++|+.+|.+++|+|+.+|+..++...............+..+|..+|++++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999987655455667788899999999999999999998764
No 20
>PTZ00184 calmodulin; Provisional
Probab=99.44 E-value=1.7e-12 Score=73.91 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHH
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEEL 94 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~ 94 (115)
..+...|..+|.+++|.|++.+|..++...... ...+.+..+|..+|.+++|.|++++|..++... ......+.+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 86 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN----PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEI 86 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC----CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHH
Confidence 456778888899999999999999988654322 114578899999999999999999999998764 334456778
Q ss_pred HHHHHhhCCCCCcceeccCC
Q psy12124 95 DGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 95 ~~~~~~~d~~~~g~i~~~eF 114 (115)
..+|..+|.+++|.|+.++|
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~ 106 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAEL 106 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHH
Confidence 99999999999999998876
No 21
>KOG0038|consensus
Probab=99.39 E-value=2.1e-12 Score=71.90 Aligned_cols=93 Identities=31% Similarity=0.553 Sum_probs=76.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC-CCCCHHH----
Q psy12124 19 DELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELD-DQLTNEE---- 93 (115)
Q Consensus 19 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---- 93 (115)
+++...+..++.|.+++++|+...+..+... +..-.+.-+|+.||-++++.|...++...++.+- ..+++++
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~A---PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMA---PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhC---hHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 4566778889999999999999988876542 2244667799999999999999999999998863 3577776
Q ss_pred HHHHHHhhCCCCCcceeccCC
Q psy12124 94 LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 94 ~~~~~~~~d~~~~g~i~~~eF 114 (115)
++.++..+|.|++|++++.||
T Consensus 151 ~ekvieEAD~DgDgkl~~~eF 171 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEF 171 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHH
Confidence 467888999999999999887
No 22
>PLN02964 phosphatidylserine decarboxylase
Probab=99.36 E-value=2.6e-11 Score=82.46 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=64.3
Q ss_pred HHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHH
Q psy12124 2 VADILRLMG-QPFNKKI---LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77 (115)
Q Consensus 2 l~~~l~~l~-~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 77 (115)
+..+++.+| ..+++.+ ++.+++.+|.+++|.|++.||+.++...... ...+.++.+|+.+|++++|.|+.+|
T Consensus 161 Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~----~seEEL~eaFk~fDkDgdG~Is~dE 236 (644)
T PLN02964 161 VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL----VAANKKEELFKAADLNGDGVVTIDE 236 (644)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC----CCHHHHHHHHHHhCCCCCCcCCHHH
Confidence 567888888 5888777 7899999999999999999999888754321 2256788899999999999999999
Q ss_pred HHHHHHH
Q psy12124 78 LKEILRE 84 (115)
Q Consensus 78 ~~~~l~~ 84 (115)
|..++..
T Consensus 237 L~~vL~~ 243 (644)
T PLN02964 237 LAALLAL 243 (644)
T ss_pred HHHHHHh
Confidence 9998887
No 23
>PLN02964 phosphatidylserine decarboxylase
Probab=99.35 E-value=1.1e-11 Score=84.23 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=75.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHH
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELD 95 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 95 (115)
.++.+.|..+|++++|.+ +......+.. ....+.....++.+|..+|.+++|.|+++||..++..++...+++++.
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrslG~---~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSCSI---EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHhCC---CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 567777888999999987 3333332221 112223334589999999999999999999999999998888999999
Q ss_pred HHHHhhCCCCCcceeccCC
Q psy12124 96 GMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 96 ~~~~~~d~~~~g~i~~~eF 114 (115)
.+|..+|.|++|.|+++||
T Consensus 219 eaFk~fDkDgdG~Is~dEL 237 (644)
T PLN02964 219 ELFKAADLNGDGVVTIDEL 237 (644)
T ss_pred HHHHHhCCCCCCcCCHHHH
Confidence 9999999999999999886
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=4e-12 Score=67.09 Aligned_cols=62 Identities=27% Similarity=0.508 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 53 AMQKELREAFRLYD-KDGNG-YIPTSCLKEILRE-LD----DQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 53 ~~~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+.++.+|..|| ++++| .|+..+++.+++. +| ..+++++++.++..+|.+++|.|+|++|
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF 74 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEF 74 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHH
Confidence 33577999999997 99999 5999999999986 44 3468899999999999999999999988
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.34 E-value=4.6e-12 Score=67.11 Aligned_cols=61 Identities=23% Similarity=0.450 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 55 QKELREAFRLYDK-DG-NGYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 55 ~~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
...+..+|..||. ++ +|.|+..|+..++.. +|..++++++..++..+|.+++|.|+|++|.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFV 74 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 5678899999997 87 699999999999986 4667899999999999999999999999983
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.33 E-value=6.9e-12 Score=65.51 Aligned_cols=60 Identities=20% Similarity=0.453 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhcC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDK-DG-NGYIPTSCLKEILRE---LDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+-.+|..||. ++ +|+|+..||+.+++. +|..++++++..+++..|.|++|+|+|+||
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EF 73 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHH
Confidence 4567789999997 67 899999999999973 688899999999999999999999999998
No 27
>KOG0028|consensus
Probab=99.33 E-value=1.4e-11 Score=69.48 Aligned_cols=95 Identities=21% Similarity=0.350 Sum_probs=80.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-hCCCCCHHHH
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE-LDDQLTNEEL 94 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~ 94 (115)
.+++.-|..+++++.|+|++.|+..++...-.. .....+.++..-+|++++|.|++++|+++++. ++..-+.+++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE----~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi 108 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE----PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEI 108 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC----cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHH
Confidence 568888999999999999999996565555432 23567888899999999999999999999876 6776799999
Q ss_pred HHHHHhhCCCCCcceeccCC
Q psy12124 95 DGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 95 ~~~~~~~d~~~~g~i~~~eF 114 (115)
..+|+.+|.|.+|.|+..+|
T Consensus 109 ~~afrl~D~D~~Gkis~~~l 128 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRNL 128 (172)
T ss_pred HHHHHcccccCCCCcCHHHH
Confidence 99999999999999997665
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=1.1e-11 Score=65.89 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
....++.+|..+|.+++|.|+..++..++...+ ++++++..++..+|.+++|.|+++||
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF 66 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEF 66 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHH
Confidence 345677777777777777777777777777654 56677777777777777777777776
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.29 E-value=1.6e-11 Score=64.88 Aligned_cols=63 Identities=27% Similarity=0.446 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 53 AMQKELREAFRLYD-KDGNG-YIPTSCLKEILRE-L----DDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 53 ~~~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.....+..+|..|| ++++| +|+..||+.++.. + +...++.+++.++..+|.|++|.|+|+||.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 33567888999999 78998 5999999999976 2 334578899999999999999999999983
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.28 E-value=9.5e-12 Score=61.79 Aligned_cols=54 Identities=28% Similarity=0.405 Sum_probs=39.5
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 59 REAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 59 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+.+|..+|++++|.|+..|+..++...| .+.+++..++..+|.+++|.|++++|
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef 55 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEF 55 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHH
Confidence 3567777777777777777777777665 36677777777777777777777766
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.27 E-value=1.8e-11 Score=64.11 Aligned_cols=62 Identities=24% Similarity=0.439 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhcC--CCCCccCHHHHHHHHHH-hCCCC----CHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 53 AMQKELREAFRLYDK--DGNGYIPTSCLKEILRE-LDDQL----TNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 53 ~~~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.....++.+|..||+ +++|.|+..++..++.. +|..+ +.+++..++..+|.+++|.|+|++|
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF 73 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEF 73 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHH
Confidence 335678899999999 89999999999999986 55443 5899999999999999999999988
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.26 E-value=6.3e-12 Score=59.97 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=41.7
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 69 GNGYIPTSCLKEILRELDDQ-LTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
++|.|+.++|+.++..+|.. ++++++..+|..+|.+++|.|+|+||.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~ 48 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFI 48 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHH
Confidence 47899999999999778888 999999999999999999999998873
No 33
>KOG4223|consensus
Probab=99.26 E-value=7.8e-12 Score=77.65 Aligned_cols=99 Identities=19% Similarity=0.342 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhch-hchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVE-EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEE 93 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~ 93 (115)
+-.++.-+...|++++|+|+++||+.-+...... ..+.+....-...+...|+|++|+++.+|++..+..-+....+.+
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~E 278 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAE 278 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHH
Confidence 4456677777899999999999999887766542 223333445556778899999999999999999877777788999
Q ss_pred HHHHHHhhCCCCCcceeccC
Q psy12124 94 LDGMIDEIDSDGSGTVDFDG 113 (115)
Q Consensus 94 ~~~~~~~~d~~~~g~i~~~e 113 (115)
+++++...|.|++|++|++|
T Consensus 279 A~hL~~eaD~dkD~kLs~eE 298 (325)
T KOG4223|consen 279 ARHLLHEADEDKDGKLSKEE 298 (325)
T ss_pred HHHHhhhhccCccccccHHH
Confidence 99999999999999999886
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.26 E-value=2.7e-11 Score=58.83 Aligned_cols=57 Identities=53% Similarity=0.905 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef 58 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEF 58 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHH
Confidence 456788899999999999999999998888888888999999999888999998877
No 35
>KOG0377|consensus
Probab=99.24 E-value=1e-10 Score=75.78 Aligned_cols=100 Identities=17% Similarity=0.308 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHH-----------------------------------------
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA----------------------------------------- 53 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~----------------------------------------- 53 (115)
.+++..-|+.+|+...|+++...|...+........||.
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 457888899999999999999999988766543321110
Q ss_pred --HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 54 --MQKELREAFRLYDKDGNGYIPTSCLKEILREL----DDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 54 --~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
....+..+|+.+|.+++|.|+.+||+.+++-+ ...+++.++.++-+.+|.|+||.|+++||
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEf 609 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEF 609 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHH
Confidence 11257789999999999999999999999875 44678999999999999999999999987
No 36
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.19 E-value=5.8e-11 Score=64.89 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
....+..+|..+|.+++|.|+..|+..+. ....+..+..+|..+|.|++|.||++||+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~ 103 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWC 103 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 35678899999999999999999999876 33557778999999999999999999984
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.15 E-value=2.2e-10 Score=59.95 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=52.7
Q ss_pred HHHHHHHHHHh-hcCCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 54 MQKELREAFRL-YDKDGNG-YIPTSCLKEILREL-----DDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 54 ~~~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
....+..+|.. +|++++| .|+..||..++... +....+.++..++..+|.|++|.|+|+||.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 35678889998 6788876 99999999999885 345667899999999999999999999983
No 38
>KOG0034|consensus
Probab=99.14 E-value=9.6e-10 Score=64.73 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHh---CCC-CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCc-cCHHHHHHHHHHhCC
Q psy12124 13 FNKKILDELIEEV---DAD-KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGY-IPTSCLKEILRELDD 87 (115)
Q Consensus 13 ~~~~~~~~l~~~~---d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-i~~~e~~~~l~~~~~ 87 (115)
.+..|+.++...+ +.. +.|.++.++|..+.....+ .....++..++.+++|. |++++|.+++..+..
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N--------p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~ 98 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALN--------PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP 98 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcC--------cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcC
Confidence 5667776666554 777 8899999999999844442 45667999999999988 999999999999877
Q ss_pred CCCHH-HHHHHHHhhCCCCCcceeccCC
Q psy12124 88 QLTNE-ELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 88 ~~~~~-~~~~~~~~~d~~~~g~i~~~eF 114 (115)
..+.. .++-+|+.||.+.+|.|+.+|+
T Consensus 99 ~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 99 KASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred CccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 66666 8999999999999999998875
No 39
>PF14658 EF-hand_9: EF-hand domain
Probab=99.06 E-value=2.6e-10 Score=55.68 Aligned_cols=56 Identities=34% Similarity=0.597 Sum_probs=50.4
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-cceeccCCC
Q psy12124 60 EAFRLYDKDGNGYIPTSCLKEILRELDD-QLTNEELDGMIDEIDSDGS-GTVDFDGKS 115 (115)
Q Consensus 60 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~ 115 (115)
.+|..||.++.|.|...++..+|++++. ..+++++..+...+|+++. |.|+++.|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~ 59 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFL 59 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHH
Confidence 3689999999999999999999999988 8889999999999999887 999998873
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.05 E-value=1e-09 Score=52.20 Aligned_cols=42 Identities=29% Similarity=0.569 Sum_probs=27.1
Q ss_pred HHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy12124 2 VADILRLMGQP-FNKKILDELIEEVDADKSGRLEFDEFVTLAA 43 (115)
Q Consensus 2 l~~~l~~l~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 43 (115)
|+.+|..+|.. ++++++..+++.+|.+++|.|++.||+.++.
T Consensus 10 ~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 10 FRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp HHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 55566556666 6666666666666666666666666666553
No 41
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.03 E-value=8.9e-10 Score=57.63 Aligned_cols=61 Identities=16% Similarity=0.383 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCcceeccCC
Q psy12124 54 MQKELREAFRLYDKD--GNGYIPTSCLKEILR-ELDDQLT----NEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
....+..+|..|+.. ++|.|+..||+.++. .++..++ ++++..++..+|.+++|.|+|++|
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF 73 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEF 73 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHH
Confidence 346677889999865 479999999999997 5666566 899999999999999999999998
No 42
>KOG4223|consensus
Probab=99.03 E-value=8.7e-10 Score=68.72 Aligned_cols=101 Identities=19% Similarity=0.349 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhc------h-hc---hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIV------E-ED---DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~------~-~~---~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
..+..+-+..+|.+.+|.|++++|......... . .. -.....+-++-|+.-|.+++|.++++||..+|..
T Consensus 112 ~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP 191 (325)
T KOG4223|consen 112 VEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP 191 (325)
T ss_pred HHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh
Confidence 344556666678888888888888887764310 0 00 0112234556899999999999999999999865
Q ss_pred h-CCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 85 L-DDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
- ...+..--+.+-+...|.|++|.|+++||.
T Consensus 192 Ee~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 192 EEHPHMKDIVIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred hhcchHHHHHHHHHHhhcccCCCCceeHHHHH
Confidence 3 335666778899999999999999999983
No 43
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.99 E-value=9.4e-09 Score=53.74 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCC-CCCCcccHHHHHHHHHHHhchhchHHHH-HHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 16 KILDELIEEVDA-DKSGRLEFDEFVTLAAKFIVEEDDEAMQ-KELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 16 ~~~~~l~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
..+...|+.+|. +++|.|+..|+..++......... . ..+..+++.+|.+++|.|+++||..++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls---~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLK---DVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhcc---CHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 457889999999 999999999999999884332111 2 678899999999999999999999988764
No 44
>KOG0037|consensus
Probab=98.96 E-value=3.6e-09 Score=62.77 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHH
Q psy12124 14 NKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEE 93 (115)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~ 93 (115)
+..++..++..+|.+..|+|+-+|...++...... .-..+..+.+..+||.+.+|+|...||..+++.+. .
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~---~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~ 125 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWS---PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN------Q 125 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCC---CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH------H
Confidence 45689999999999999999999999998843322 22367888999999999999999999999998764 4
Q ss_pred HHHHHHhhCCCCCcceeccCC
Q psy12124 94 LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 94 ~~~~~~~~d~~~~g~i~~~eF 114 (115)
-+.+|+.+|.|.+|.|+..|+
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL 146 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSEL 146 (221)
T ss_pred HHHHHHhcccCCCCcccHHHH
Confidence 678999999999999998764
No 45
>KOG0041|consensus
Probab=98.95 E-value=2.9e-09 Score=62.48 Aligned_cols=60 Identities=32% Similarity=0.519 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+..+|+.||.+.+|+|++.|++.++..+|.+.+.--++.+++..|.|.+|+|++-||
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfref 157 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREF 157 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHH
Confidence 456778999999999999999999999999999999888999999999999999998776
No 46
>KOG0036|consensus
Probab=98.91 E-value=1.4e-08 Score=65.46 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEEL 94 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 94 (115)
+-.+..+|+.+|.+++|.+++.+....+.....+. ...+.+..+|...|.+.+|.+++.+|++.+.. .+.++
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~---~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l 84 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPK---PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELEL 84 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCC---CchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHH
Confidence 45789999999999999999999998888777652 23567888999999999999999999999864 34578
Q ss_pred HHHHHhhCCCCCcceeccC
Q psy12124 95 DGMIDEIDSDGSGTVDFDG 113 (115)
Q Consensus 95 ~~~~~~~d~~~~g~i~~~e 113 (115)
..+|...|.++||+|+.+|
T Consensus 85 ~~~F~~iD~~hdG~i~~~E 103 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNE 103 (463)
T ss_pred HHHHhhhccccCCccCHHH
Confidence 8999999999999998764
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.89 E-value=3.4e-08 Score=52.48 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
..+...|..+|.+++|.|+..++..++..... ..+.+..++..+|.+++|.|++++|..++..+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~------~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL------PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC------CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 45778889999999999999999999876421 14678889999999999999999999988763
No 48
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.89 E-value=2.4e-08 Score=49.34 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=51.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 19 DELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 19 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
+.+|..+|.+++|.|+..++..++...-. ..+.+..+|..+|.+++|.|++.+|..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 46789999999999999999998866421 24668889999999999999999999887654
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.89 E-value=3.5e-09 Score=43.81 Aligned_cols=27 Identities=48% Similarity=0.850 Sum_probs=18.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
++.+|+.+|++++|+|+++||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456677777777777777777766654
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.88 E-value=2.6e-08 Score=52.61 Aligned_cols=70 Identities=9% Similarity=0.103 Sum_probs=54.1
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHHHhchh-chHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 16 KILDELIEEVD-ADKSG-RLEFDEFVTLAAKFIVEE-DDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 16 ~~~~~l~~~~d-~~~~g-~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
..+.+.|..|| .+++| .|+..|+..++....... ........+..++..+|.+++|.|++.||..++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45677799998 67898 599999999997643210 001124678899999999999999999999998765
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.82 E-value=4.6e-08 Score=47.15 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
+..+|..+|.+++|.+++.+|..++...... .....+..+|..+|.+++|.|+..+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG----LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC----CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999998776432 225677889999999999999999998765
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.82 E-value=9.6e-08 Score=49.92 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHHHhchhc-hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 16 KILDELIEEVD-ADKSG-RLEFDEFVTLAAKFIVEED-DEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 16 ~~~~~l~~~~d-~~~~g-~i~~~ef~~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
..+...|+.+| ++++| .|+..++..++....+... .......+..+++.+|++++|.|++++|..++..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46788999998 79999 5999999999987221100 01224668899999999999999999999887654
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.81 E-value=7e-08 Score=52.85 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
.....+.-.|..+|.+++|.|+.+|+..+. .. .....+...|..+|.+++|.||+.|+..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD------PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc------chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678889999999999999999999876 11 124667889999999999999999999988
No 54
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.79 E-value=3.6e-08 Score=52.18 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCC-CC-CCcccHHHHHHHHHHHhch-hchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q psy12124 15 KKILDELIEEVDA-DK-SGRLEFDEFVTLAAKFIVE-EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELD 86 (115)
Q Consensus 15 ~~~~~~l~~~~d~-~~-~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 86 (115)
...+...|..+|. ++ +|.|+..++..++...... .........+..++..+|.+++|.|++++|..++...+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4568889999987 86 6999999999998652211 00011246788899999999999999999999887654
No 55
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.79 E-value=7.7e-08 Score=50.71 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhC-CCCCC-cccHHHHHHHHHHHhchh-chHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 15 KKILDELIEEVD-ADKSG-RLEFDEFVTLAAKFIVEE-DDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 15 ~~~~~~l~~~~d-~~~~g-~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.+++.+.|..+| .+++| .|+..++..++....... ........+..++..+|.+++|.|++++|..++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 599999999996522110 001124678899999999999999999999988764
No 56
>KOG0031|consensus
Probab=98.78 E-value=5.1e-08 Score=55.04 Aligned_cols=47 Identities=36% Similarity=0.666 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
..+++++|.++|.|++|.|+.++++.++..+|...+++++++++...
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea 77 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA 77 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 57888999999999999999999999999998888888888777654
No 57
>KOG0030|consensus
Probab=98.78 E-value=1e-08 Score=56.85 Aligned_cols=60 Identities=30% Similarity=0.508 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSD--GSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~eF 114 (115)
...++++|..||..++|+|+..++..+|+++|.++++.++...+..++.+ +-.+|++++|
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~f 71 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEF 71 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHH
Confidence 47899999999999999999999999999999999999999999998877 4467888776
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.78 E-value=1.4e-07 Score=49.32 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHhchhc-hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 15 KKILDELIEEVDA--DKSGRLEFDEFVTLAAKFIVEED-DEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 15 ~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
..++...|..+|. +++|.|+..++..++........ .......+..++..+|.+++|.|++++|..++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3567888999999 89999999999999865322100 01124678889999999999999999999988754
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.77 E-value=1.4e-08 Score=42.72 Aligned_cols=30 Identities=53% Similarity=0.975 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHH-HhC
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILR-ELD 86 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 86 (115)
+++.+|..+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 554
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.70 E-value=4.4e-08 Score=40.47 Aligned_cols=28 Identities=36% Similarity=0.666 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy12124 17 ILDELIEEVDADKSGRLEFDEFVTLAAK 44 (115)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (115)
|++.+|+.+|.+++|+|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999998754
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.64 E-value=4.4e-07 Score=47.53 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=52.2
Q ss_pred HHHHHHHH-hCCCCCC-cccHHHHHHHHHHHhchhch-HHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 17 ILDELIEE-VDADKSG-RLEFDEFVTLAAKFIVEEDD-EAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 17 ~~~~l~~~-~d~~~~g-~i~~~ef~~~~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.+..+|.. .+.+++| .|+..||..++......... ......+..++..+|.+++|.|+++||..++..+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45667777 5676765 99999999999887532110 1124578889999999999999999999988764
No 62
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.62 E-value=8.2e-07 Score=46.41 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHHhCC-CC-CCcccHHHHHHHHHHH--hchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 17 ILDELIEEVDA-DK-SGRLEFDEFVTLAAKF--IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 17 ~~~~l~~~~d~-~~-~g~i~~~ef~~~~~~~--~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.+-.+|..|+. ++ +|.|+..||..++... .... ...+.+..+++.+|.+++|.|++.+|..++..+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k---~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK---LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 45678888887 55 7899999999999642 2221 125678889999999999999999998887654
No 63
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.56 E-value=5.7e-07 Score=46.96 Aligned_cols=59 Identities=17% Similarity=0.388 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+-.+|..|. ...+.++..||+.++.. +...-.+..++.++...|.|+||.|+|.||
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF 70 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSF 70 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 455666788886 44568999999888865 343456777888999999999999998887
No 64
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.53 E-value=1e-06 Score=57.60 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
|.......+..+|+.+|.+++|.|+..||.. ...+|..+|.+++|.|+.+||..+++.
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-----------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-----------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4455566666666667766777777666631 234566666667777777766666544
No 65
>KOG2643|consensus
Probab=98.53 E-value=6.1e-08 Score=62.93 Aligned_cols=83 Identities=20% Similarity=0.408 Sum_probs=60.5
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh------CC--------C-CC
Q psy12124 26 DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL------DD--------Q-LT 90 (115)
Q Consensus 26 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~------~~--------~-~~ 90 (115)
+.+..|.|+|.+|+-++..+..+ ...++.+|++||.|++|.|+.+||..+...+ |. . .-
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p------~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~ 282 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIP------ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSF 282 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccC------cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCcccccee
Confidence 33578999999999888777654 5678889999999999999999999988542 11 0 11
Q ss_pred HHHHHH--HHHhhCCCCCcceeccCC
Q psy12124 91 NEELDG--MIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 91 ~~~~~~--~~~~~d~~~~g~i~~~eF 114 (115)
..+++. ...-+.+++++++++++|
T Consensus 283 ~~~~nsaL~~yFFG~rg~~kLs~deF 308 (489)
T KOG2643|consen 283 KVEVNSALLTYFFGKRGNGKLSIDEF 308 (489)
T ss_pred hhhhhhhHHHHhhccCCCccccHHHH
Confidence 112332 223357888999999887
No 66
>KOG4251|consensus
Probab=98.49 E-value=2.4e-07 Score=56.36 Aligned_cols=98 Identities=16% Similarity=0.354 Sum_probs=77.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhc-----hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCC
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED-----DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLT 90 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-----~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~ 90 (115)
.-++.+.+.+|++++..++..+|+.........+. ......+.+..=..+|.+.+|.++++|+..+.-..+....
T Consensus 236 fmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~a 315 (362)
T KOG4251|consen 236 FMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLA 315 (362)
T ss_pred HHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhh
Confidence 45788888999999999999999988665543322 1223345555667899999999999999999877777778
Q ss_pred HHHHHHHHHhhCCCCCcceeccC
Q psy12124 91 NEELDGMIDEIDSDGSGTVDFDG 113 (115)
Q Consensus 91 ~~~~~~~~~~~d~~~~g~i~~~e 113 (115)
..++..++...|.+++.+++.++
T Consensus 316 lne~~~~ma~~d~n~~~~Ls~ee 338 (362)
T KOG4251|consen 316 LNEVNDIMALTDANNDEKLSLEE 338 (362)
T ss_pred HHHHHHHHhhhccCCCcccCHHH
Confidence 88899999999999998888765
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.46 E-value=4.1e-06 Score=43.79 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCC--CCCcccHHHHHHHHHHHhchhc-hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 17 ILDELIEEVDAD--KSGRLEFDEFVTLAAKFIVEED-DEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 17 ~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.+-.+|..+... .+|.|+..++..++........ .......+..+|..+|.+++|.|++++|..++..+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456777777654 4789999999999975432210 00114678899999999999999999999988654
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.45 E-value=6.1e-07 Score=58.62 Aligned_cols=50 Identities=30% Similarity=0.533 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 53 AMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 53 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.....++.+|..+|.+++|.|+..||.. ++.+|..+|.|++|.|+++||.
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~ 380 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMR 380 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHH
Confidence 3445788999999999999999999832 5789999999999999999983
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.43 E-value=3.4e-07 Score=36.46 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=16.4
Q ss_pred HHHHHhhcCCCCCccCHHHHHHH
Q psy12124 59 REAFRLYDKDGNGYIPTSCLKEI 81 (115)
Q Consensus 59 ~~~f~~~D~~~~g~i~~~e~~~~ 81 (115)
+.+|..+|.+++|.|+..|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777664
No 70
>KOG0377|consensus
Probab=98.41 E-value=1.5e-06 Score=57.05 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.+.+..+|+.+|.++.|.|+.+||..++..+..-.........+...-+.+|-+++|.|+..||..+++-.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 45688999999999999999999999988777554444456788889999999999999999998887653
No 71
>KOG2643|consensus
Probab=98.38 E-value=3.8e-07 Score=59.41 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 86 DDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 86 ~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
|..+++.-++.+|..+|.|+||+|+++||
T Consensus 419 GveLSdhVvdvvF~IFD~N~Dg~LS~~EF 447 (489)
T KOG2643|consen 419 GVELSDHVVDVVFTIFDENNDGTLSHKEF 447 (489)
T ss_pred CcccccceeeeEEEEEccCCCCcccHHHH
Confidence 44445555566777777777888877776
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.37 E-value=2.2e-06 Score=39.70 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=33.7
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (115)
|++.+|+.+++.+++.-+..+|+.+|..++|.+.-+||..++..
T Consensus 6 Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 6 EVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred HHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 57888999999999999999999999999999999998887654
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.35 E-value=9e-07 Score=47.59 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
......+|...+. ++|.|+-++.+.++...+ ++.+.+..++..+|.+++|.++.+||+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~ 66 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFA 66 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHH
Confidence 3455667777664 467777777777776654 666777777777777777777777763
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.32 E-value=5.9e-07 Score=41.59 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 73 IPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 73 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+++.|+..+|+.++..++++.+..+|..+|..++|++.-+||
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef 43 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEF 43 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHH
Confidence 567778888888877788888888888888888887776654
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=98.32 E-value=6e-06 Score=40.47 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=47.8
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCC-CccCHHHHHHHHHH
Q psy12124 21 LIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGN-GYIPTSCLKEILRE 84 (115)
Q Consensus 21 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-g~i~~~e~~~~l~~ 84 (115)
.|..||.++.|.|...+++.++...-...+. ...++.+...+|+++. |.|+++.|..+++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~---e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPE---ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCc---HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5778888899999888888887776653322 4578888888998887 88999988888764
No 76
>KOG0040|consensus
Probab=98.27 E-value=5e-06 Score=61.47 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=70.8
Q ss_pred CHHHHHHHhCCCCC--H-----HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCcc
Q psy12124 1 MVADILRLMGQPFN--K-----KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73 (115)
Q Consensus 1 el~~~l~~l~~~~~--~-----~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 73 (115)
+|+.+|+++|+.++ + .++++++..+||+.+|+|+..+|+.++...-..+... ...+..+|+.+|. +..+|
T Consensus 2274 ~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s--~~eIE~AfraL~a-~~~yv 2350 (2399)
T KOG0040|consen 2274 HFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS--SEEIEDAFRALDA-GKPYV 2350 (2399)
T ss_pred HHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc--hHHHHHHHHHhhc-CCccc
Confidence 47889999998763 3 4899999999999999999999999998776554322 2488999999998 88899
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 74 PTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 74 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
+..++... ++.++++-++..+
T Consensus 2351 tke~~~~~-------ltreqaefc~s~m 2371 (2399)
T KOG0040|consen 2351 TKEELYQN-------LTREQAEFCMSKM 2371 (2399)
T ss_pred cHHHHHhc-------CCHHHHHHHHHHh
Confidence 99887664 4555555444443
No 77
>KOG4666|consensus
Probab=98.14 E-value=1.2e-06 Score=55.28 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=76.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHH
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELD 95 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 95 (115)
..+..+|..||.+.+|.++|.+....+.-.++.. .....++-+|+.|+...+|.++..+|..+|... .++..=.+-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~---~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPP---VTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCC---CcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeecc
Confidence 5678899999999999999999998888777653 225678889999999999999999988888763 123333466
Q ss_pred HHHHhhCCCCCcceeccCC
Q psy12124 96 GMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 96 ~~~~~~d~~~~g~i~~~eF 114 (115)
.+|...+...+|+|++.+|
T Consensus 335 ~lf~~i~q~d~~ki~~~~f 353 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNF 353 (412)
T ss_pred ccchhhhcccCcceeHHHH
Confidence 7888888878889988876
No 78
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.10 E-value=5.4e-05 Score=39.61 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhc-hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 17 ILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED-DEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.+..+|..|. ...+.++..||..++....+.-. .......+..+++.+|.+++|.|++.||..++..+
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3456677776 44568999999999977664311 11224578889999999999999999999988765
No 79
>KOG0751|consensus
Probab=98.08 E-value=5.6e-05 Score=50.55 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC----
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ---- 88 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---- 88 (115)
+++.-+.-+-...|...+|.|+|+||+.+-...+.. ......+|..||+.++|.++.+++..++......
T Consensus 71 ~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p------Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~ 144 (694)
T KOG0751|consen 71 FNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP------DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIP 144 (694)
T ss_pred CChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc------hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCC
Confidence 334444444455577789999999999987777754 4556779999999999999999999998763211
Q ss_pred -------------------------------CCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 89 -------------------------------LTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 89 -------------------------------~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.-.+...+.|...|..++|.|+--+|
T Consensus 145 f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldf 201 (694)
T KOG0751|consen 145 FNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDF 201 (694)
T ss_pred ccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeech
Confidence 11233456777778888888775554
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.08 E-value=9.4e-06 Score=32.24 Aligned_cols=25 Identities=32% Similarity=0.732 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q psy12124 18 LDELIEEVDADKSGRLEFDEFVTLA 42 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~ 42 (115)
++..|+.+|.+++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998753
No 81
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.05 E-value=3.3e-07 Score=50.04 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+.-.|..+|.+++|.++..|+..+...+ ...+.-+...+..+|.|+||.|+..|+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 4567778999999999999999998876544 355566889999999999999999875
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.00 E-value=1.7e-05 Score=33.09 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy12124 17 ILDELIEEVDADKSGRLEFDEFVTLAA 43 (115)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~ 43 (115)
+++.+|+.+|.+++|.|+..||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999886
No 83
>KOG0041|consensus
Probab=97.95 E-value=9.2e-05 Score=44.02 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
..+..+|+.+|.+.+|+|++.|+...+.++--+++ .-.++.+....|.|.+|+|++.+|..+++.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQT----HL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQT----HLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchh----hHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 34677888999999999999999999988875433 346777888999999999999999888865
No 84
>KOG0040|consensus
Probab=97.91 E-value=6e-05 Score=56.20 Aligned_cols=96 Identities=20% Similarity=0.381 Sum_probs=72.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchh---chHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh--CCCCC
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEE---DDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL--DDQLT 90 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~--~~~~~ 90 (115)
.++.-+|+.||.+.+|++++.+|...+...--.. ......+.+..+....|++.+|+|+..++..++-.- ....+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 5677789999999999999999998876654221 111224578889999999999999999999988552 22346
Q ss_pred HHHHHHHHHhhCCCCCcceecc
Q psy12124 91 NEELDGMIDEIDSDGSGTVDFD 112 (115)
Q Consensus 91 ~~~~~~~~~~~d~~~~g~i~~~ 112 (115)
.++|+.+|+..+. +..+|+.+
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke 2353 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKE 2353 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHH
Confidence 6799999999987 45555544
No 85
>KOG4251|consensus
Probab=97.88 E-value=1.5e-05 Score=48.75 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHH-hCC--CCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRE-LDD--QLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+..+|...|.+.+|+|+..|+.+.+.. ... .-..++-+..|...|+|++|.|+++||
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEy 162 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEY 162 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhh
Confidence 345666677777777777777777665533 111 112233445566667777777777765
No 86
>KOG2562|consensus
Probab=97.80 E-value=0.00017 Score=47.81 Aligned_cols=99 Identities=19% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHh----CCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh--
Q psy12124 12 PFNKKILDELIEEV----DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-- 85 (115)
Q Consensus 12 ~~~~~~~~~l~~~~----d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-- 85 (115)
..+.--++++|..+ -...+|+++|.+|+.++........ ..-+.-.|+.+|.+++|.++..|++.+....
T Consensus 307 tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t----~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~ 382 (493)
T KOG2562|consen 307 TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDT----PASLEYWFRCLDLDGDGILTLNELRYFYEEQLQ 382 (493)
T ss_pred chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCC----ccchhhheeeeeccCCCcccHHHHHHHHHHHHH
Confidence 35566678888843 2346889999999988876654432 3457779999999999999999998877652
Q ss_pred -----CC-CCC-HHHHHHHHHhhCCCCCcceeccCC
Q psy12124 86 -----DD-QLT-NEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 86 -----~~-~~~-~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
+. .++ +..+.+++-...+...++|+..+|
T Consensus 383 rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDl 418 (493)
T KOG2562|consen 383 RMECMGQEALPFEDALCQIRDMVKPEDENKITLQDL 418 (493)
T ss_pred HHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHH
Confidence 21 222 444567777777777888888765
No 87
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.78 E-value=0.0003 Score=37.90 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.....+|...++ .+|.|+-.+-..++...-.. .+.+..+|..-|.+++|+++.+||..++.-+
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~------~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLP------RDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSS------HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCC------HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 456777887775 57999999998876655433 5789999999999999999999999988653
No 88
>KOG2562|consensus
Probab=97.75 E-value=6.6e-05 Score=49.64 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=69.7
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHH----hhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q psy12124 22 IEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR----LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGM 97 (115)
Q Consensus 22 ~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 97 (115)
|...|.+.+|.++.++....-..... ...+.++|. .+-...+|.+++.+|.-++-++-..-++..++.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~tlt-------~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHTLT-------ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HhhhccccccccCHHHHHHHhccchh-------hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 66778889999998888877666653 345667777 4445678999999999999998878888899999
Q ss_pred HHhhCCCCCcceeccC
Q psy12124 98 IDEIDSDGSGTVDFDG 113 (115)
Q Consensus 98 ~~~~d~~~~g~i~~~e 113 (115)
|+..|.+++|.|+.+|
T Consensus 357 FrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNE 372 (493)
T ss_pred eeeeeccCCCcccHHH
Confidence 9999999999988654
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.68 E-value=0.00011 Score=29.17 Aligned_cols=26 Identities=54% Similarity=0.962 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHH
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILR 83 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~ 83 (115)
++.+|..+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566666666666777666666654
No 90
>KOG0046|consensus
Probab=97.66 E-value=0.00012 Score=49.24 Aligned_cols=59 Identities=27% Similarity=0.537 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ---LTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...++..|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|+|++++|
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f 79 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEF 79 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHH
Confidence 344555666666 666666666666666554332 23556666666666666666666665
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.47 E-value=0.00023 Score=28.17 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy12124 17 ILDELIEEVDADKSGRLEFDEFVTLAAK 44 (115)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (115)
+++.+++.+|.+++|.|++.+|..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678899999999999999999988753
No 92
>KOG4666|consensus
Probab=97.40 E-value=8.2e-05 Score=47.31 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRE-LDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.+.++..|..||.+++|.+++.+....+.. ++...++.-+...|+.++.+.||.+.-++|
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~l 318 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHIL 318 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHH
Confidence 367888999999999999999998888876 477889999999999999999998776544
No 93
>KOG0038|consensus
Probab=97.31 E-value=0.0013 Score=37.36 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=44.3
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCC-HHHHHHHHHhhCCCCCcceeccC
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILRELDDQLT-NEELDGMIDEIDSDGSGTVDFDG 113 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~e 113 (115)
.-+.+...|..+|.|.+++++|..++..++..-+ +-.+..+|+.+|.|+++.|..++
T Consensus 72 fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~D 129 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDD 129 (189)
T ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHH
Confidence 3456778889999999999999999988765333 33467789999999998876543
No 94
>KOG4065|consensus
Probab=97.28 E-value=0.00049 Score=37.41 Aligned_cols=55 Identities=22% Similarity=0.415 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHh------CC---C-CCHHH----HHHHHHhhCCCCCcceeccCC
Q psy12124 60 EAFRLYDKDGNGYIPTSCLKEILREL------DD---Q-LTNEE----LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 60 ~~f~~~D~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~----~~~~~~~~d~~~~g~i~~~eF 114 (115)
..|.+.|-+++|.++--|+..+++.. |. + +++.+ ++.++..-|.|+||.|+|-||
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 47899999999999999999988763 22 1 23444 455666678889999999987
No 95
>KOG4347|consensus
Probab=97.23 E-value=0.0065 Score=42.23 Aligned_cols=57 Identities=23% Similarity=0.172 Sum_probs=47.7
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccC
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 113 (115)
..+..+|+.+|.+.+|.+++.++...|..+-..-..+.+..+|..+|++.+ ..+.++
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 457789999999999999999999999988766777888999999998877 655543
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.19 E-value=0.00017 Score=39.50 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 80 (115)
...+.=.|..+|.+++|.++..|+..+....... ...++..+...|.+++|.||..|...
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~------e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPP------EHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTT------GGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhh------HHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4556677899999999999999999876644322 34678889999999999999998754
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.13 E-value=0.00045 Score=35.58 Aligned_cols=56 Identities=27% Similarity=0.583 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCcceeccCC
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDD--QLTNEELDGMIDEIDSD----GSGTVDFDGK 114 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~eF 114 (115)
+..+|..+.. +.+.|+.++|..+|...+. ..+.+.+..++..+.++ ..+.+++++|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF 63 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGF 63 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHH
Confidence 5667888854 6788888888888876433 35788888888887544 3566776655
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.86 E-value=0.0039 Score=32.02 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCC----CCCccCHHHHHHHHHH
Q psy12124 17 ILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD----GNGYIPTSCLKEILRE 84 (115)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 84 (115)
++..+|+.+.. +.+.++.++|..++........ .....+..++..|.++ ..+.++.++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~--~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPR--LTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TT--SSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcccc--CcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 57889999965 7889999999999987775521 1245666677777544 4789999999999865
No 99
>KOG3555|consensus
Probab=96.80 E-value=0.0023 Score=41.29 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 53 AMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 53 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.-...+.-+|..+|.+.+|.++..|++.+ ...-.+.-++.+|..+|...||.|+-.|++
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I----~ldknE~CikpFfnsCD~~kDg~iS~~EWC 305 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAI----ELDKNEACIKPFFNSCDTYKDGSISTNEWC 305 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhh----hccCchhHHHHHHhhhcccccCccccchhh
Confidence 44567888999999999999999998764 344567778999999999999999988864
No 100
>KOG1029|consensus
Probab=96.69 E-value=0.0012 Score=46.71 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.-+.+|+.+|+..+|+++-..-+.+|...+ ++...+.++....|.|+||+++-+||.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfi 252 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFI 252 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHH
Confidence 566799999999999999999999987665 777889999999999999999999883
No 101
>KOG0751|consensus
Probab=96.50 E-value=0.028 Score=38.30 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhc-------------------------------hHHHHHHHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED-------------------------------DEAMQKELREAFR 63 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-------------------------------~~~~~~~~~~~f~ 63 (115)
+.-....|..+|..++|.++++++..++........ +.-..+....+|+
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777788888888888888877554321100 1222345778999
Q ss_pred hhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC-cceecc
Q psy12124 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGS-GTVDFD 112 (115)
Q Consensus 64 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ 112 (115)
..|+.++|.|+.-++...+.....++....+++.+......++ .++++.
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~ 236 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFS 236 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchH
Confidence 9999999999999999998887666666677776665543333 345443
No 102
>KOG0169|consensus
Probab=96.49 E-value=0.037 Score=39.35 Aligned_cols=104 Identities=25% Similarity=0.421 Sum_probs=71.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 3 ADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
..+++.++..+...-+..+++..+...++++...+|..+....... ..+...|..+-.+ .++++..++..+|
T Consensus 159 ~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-------pev~~~f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 159 LDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-------PEVYFLFVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-------chHHHHHHHHhCC-CCccCHHHHHHHH
Confidence 3455666666666677777777766667777777777776655442 2667777777544 8899999999999
Q ss_pred HHhC--CCCCHHHHHHHHHhhCCCC----CcceeccCC
Q psy12124 83 RELD--DQLTNEELDGMIDEIDSDG----SGTVDFDGK 114 (115)
Q Consensus 83 ~~~~--~~~~~~~~~~~~~~~d~~~----~g~i~~~eF 114 (115)
...+ .+.+...+..+++.+.... .+.++++.|
T Consensus 231 ~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF 268 (746)
T KOG0169|consen 231 EEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGF 268 (746)
T ss_pred HHhcccccccHHHHHHHHHHhhhhhhccccceecHHHH
Confidence 8763 2577888888887775432 344666554
No 103
>KOG1955|consensus
Probab=96.09 E-value=0.014 Score=39.75 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 53 AMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 53 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
..++.....|+.+..+-.|+|+-.--+.+++... +.-+++.+++..+|.|.||-+++.|||
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFc 288 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFC 288 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHH
Confidence 3355666788889999999999887777776644 667889999999999999999999986
No 104
>KOG0046|consensus
Probab=95.83 E-value=0.083 Score=36.35 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHH---hCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 11 QPFNKKILDELIEE---VDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 11 ~~~~~~~~~~l~~~---~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
-.+|..|+..+-.. .| +++|+|+..+...++....... .....+.++.+....+.+.+|.|++++|..++-.
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 34566666555444 56 8899999999999988766443 2344678888999999999999999999986543
No 105
>KOG2243|consensus
Probab=95.15 E-value=0.02 Score=43.76 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=45.4
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 61 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
-|+-||+++.|.|+..+|..++... ...+..+++-++.....|.+..++|++|
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~df 4114 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDF 4114 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHH
Confidence 4566899999999999999998754 3578889999999999998989999887
No 106
>KOG4065|consensus
Probab=95.02 E-value=0.19 Score=27.64 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCHHHHH-HHHHHhCCCCCCcccHHHHHHHHHHHhchhc----------hHHHHHHHHHHHHhhcCCCCCccCHHHHHHH
Q psy12124 13 FNKKILD-ELIEEVDADKSGRLEFDEFVTLAAKFIVEED----------DEAMQKELREAFRLYDKDGNGYIPTSCLKEI 81 (115)
Q Consensus 13 ~~~~~~~-~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~----------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~ 81 (115)
+|+++++ -.|+..|.++++.++=-|.+.++........ .......+..+.+--|.+++|+|++-||...
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5555554 3567789999999999999988877654211 1112234455667778999999999987653
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=94.99 E-value=0.23 Score=34.99 Aligned_cols=70 Identities=21% Similarity=0.407 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhh
Q psy12124 29 KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDD--QLTNEELDGMIDEI 101 (115)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~ 101 (115)
..|.++|.+|..+......... ..+..+..+|..+-. +.+.++.++|..+|...+. ..+.+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~--~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEA--EPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEV 84 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccC--CChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 4689999999888776642210 125788999999965 4478999999999988643 35667777776543
No 108
>KOG4347|consensus
Probab=94.83 E-value=0.098 Score=36.76 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCL 78 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 78 (115)
.+..-..++|+..|...+|.++|.+++..+...... ...+.+.-.|+.+|++++ ..+.++.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~----~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG----DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh----hHHHHHHHHHhhccCCcc-ccccccc
Confidence 455668899999999999999999999999998874 335678889999999999 8888887
No 109
>KOG0042|consensus
Probab=94.66 E-value=0.046 Score=37.90 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+.-|..+|.++.|+++..++.++|+..+.++++..+...+...+.+.+|.+...||
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~ 651 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREF 651 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHH
Confidence 34556789999999999999999999999988999999999999999888898887775
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.65 E-value=0.099 Score=30.29 Aligned_cols=47 Identities=11% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 68 DGNGYIPTSCLKEILRELDD---QLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 68 ~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.....++-..|..+++..+. .++...++.+|..+-..+..+|+|++|
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F 63 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQF 63 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHH
Confidence 34445666666666666432 456666666666654444455666655
No 111
>KOG1265|consensus
Probab=94.64 E-value=1.3 Score=32.90 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhh
Q psy12124 32 RLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL----------DDQLTNEELDGMIDEI 101 (115)
Q Consensus 32 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~ 101 (115)
.+++..|..++.+++. +..+..+|..+..++.-++|.++|..+|..- -.......+..++..+
T Consensus 204 ~f~~e~f~~~l~klcp-------R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~lieky 276 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCP-------RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKY 276 (1189)
T ss_pred hccHHHHHHHHHhcCC-------chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHc
Confidence 3567777777777775 4688999999988888999999999999752 2345778899999999
Q ss_pred CCCC----CcceeccCC
Q psy12124 102 DSDG----SGTVDFDGK 114 (115)
Q Consensus 102 d~~~----~g~i~~~eF 114 (115)
.++. .|.++-+.|
T Consensus 277 Ep~~~~a~~gqms~dgf 293 (1189)
T KOG1265|consen 277 EPNSDNAEKGQMSTDGF 293 (1189)
T ss_pred CCchhhhhccccchhhh
Confidence 8775 466766655
No 112
>KOG3555|consensus
Probab=94.55 E-value=0.12 Score=33.83 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELD 86 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 86 (115)
+...++-=||...|.+.++.++..|...+-.-.- ...++..|+..|...+|.|+..|.-..+..-+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn--------E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKN--------EACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhccCc--------hhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 5577888999999999999999999887643322 56788899999999999999999988886654
No 113
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.11 E-value=0.16 Score=29.89 Aligned_cols=22 Identities=5% Similarity=0.326 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCCCCCcceecc
Q psy12124 91 NEELDGMIDEIDSDGSGTVDFD 112 (115)
Q Consensus 91 ~~~~~~~~~~~d~~~~g~i~~~ 112 (115)
++.++++|..++..+.+.+++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~ 116 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLR 116 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHH
Confidence 4456666666665555555543
No 114
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=94.08 E-value=0.59 Score=26.64 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=25.1
Q ss_pred CCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCC
Q psy12124 69 GNGYIPTSCLKEILRE-LDDQLTNEELDGMIDEIDSD 104 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~ 104 (115)
..+.|+++.|+.+|+. +...++++-+.++|..+-..
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 4458999999999998 56678999999999988653
No 115
>KOG4578|consensus
Probab=94.01 E-value=0.065 Score=34.71 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=42.4
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 21 LIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 21 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
.|..+|+++++.++-.|+..+-..+... .......+++|+..|.|++-.|++.|+...|..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~---s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKK---SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhh---ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3556688888888777666554333322 122567888888899999999999988887754
No 116
>KOG1955|consensus
Probab=93.47 E-value=0.34 Score=33.37 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
....|+.+.+|.+|.|.=..=..++.+-... ..++..+|+.-|.+++|.+++.||..++..
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKSklp------i~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKSKLP------IEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhccCc------hHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3445666788888988766666555544322 678999999999999999999999988765
No 117
>KOG0169|consensus
Probab=93.36 E-value=0.2 Score=35.92 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceec
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 111 (115)
.+..+|...|++++|.++..+...++..+...+....+..+|+..+.-+++++..
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~ 191 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEE 191 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehH
Confidence 3444555555555555555555555555555555555555555554444444433
No 118
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.20 E-value=1 Score=26.64 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchH-H--HHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDE-A--MQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-~--~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
+-++.++++|..+...+.+.+++.|...++........+- . ..-++...|... ++++|.+..++++.+.
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 3456778888888777777788888877776644322110 0 112344444444 5667888877776653
No 119
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=92.98 E-value=0.1 Score=28.64 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKF 45 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 45 (115)
+++++++.++..+..+..|++.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 589999999999999999999999999776543
No 120
>KOG0035|consensus
Probab=92.78 E-value=0.58 Score=34.50 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHH-----HHHHHHHhhCCCCCcceeccCC
Q psy12124 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNE-----ELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 51 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-----~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.+.....++..|+.+++...|..+.+++..+|..+|...-++ +...+++.-|.+..|+|++.+|
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~ 810 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEF 810 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHH
Confidence 455667899999999999999999999999999999877642 2333444555555688888765
No 121
>KOG2871|consensus
Probab=92.77 E-value=0.29 Score=32.42 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHH-HHHHHHhhCCCCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEE-LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~eF 114 (115)
.+.++++|..+|+.++|+|+..-+..++...+..+++.. +..+-...|+..-|.|-.++|
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 568999999999999999999999999999885555443 444444456655555555443
No 122
>KOG4578|consensus
Probab=92.47 E-value=0.056 Score=35.01 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILRELDDQ-LTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.+.-.|..+|+|+++.|...|.+-+=.-+-.. -...-.+.++..+|.|+|..|++.|+
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew 392 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEW 392 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHH
Confidence 45557999999999999999876544333221 23345678899999999999998875
No 123
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.56 E-value=0.28 Score=24.43 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILR 83 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 83 (115)
.+.+..+|+.+ .++.++||..+|++.|.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 46788999999 78889999999999863
No 124
>KOG1707|consensus
Probab=91.51 E-value=1.8 Score=30.63 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELD 86 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 86 (115)
.+.+..+|..||.+++|.++-.|+..++....
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 45788899999999999999999998887754
No 125
>KOG0998|consensus
Probab=90.93 E-value=0.17 Score=37.14 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
.......+|...|.+.+|.|+..+.+..+... .++...+.+.....|..+.|.+++.+|+
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~--gl~~~~l~~~w~l~d~~n~~~ls~~ef~ 340 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPF--GLSKPRLAHVWLLADTQNTGTLSKDEFA 340 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccC--CCChhhhhhhhhhcchhccCcccccccc
Confidence 34456678999999999999999998888774 4788889999999999999999999875
No 126
>KOG0035|consensus
Probab=90.62 E-value=1.7 Score=32.24 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHH
Q psy12124 2 VADILRLMGQPFNK-----KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTS 76 (115)
Q Consensus 2 l~~~l~~l~~~~~~-----~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 76 (115)
+..+|-.+|...-. +++.++....++...|.+++.+|...+....... ....++..+|+.+-+.+. ++..+
T Consensus 769 ~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l---~~~~r~i~s~~d~~ktk~-~lL~e 844 (890)
T KOG0035|consen 769 LLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL---DTELRAILAFEDWAKTKA-YLLLE 844 (890)
T ss_pred HHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh---cHHHHHHHHHHHHHcchh-HHHHH
Confidence 55677777877653 3444455555667779999999999988776543 225567778888876665 78888
Q ss_pred HHHH
Q psy12124 77 CLKE 80 (115)
Q Consensus 77 e~~~ 80 (115)
|+..
T Consensus 845 EL~~ 848 (890)
T KOG0035|consen 845 ELVR 848 (890)
T ss_pred HHHh
Confidence 8777
No 127
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.94 E-value=2.7 Score=23.58 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHhCCCC--CCcccHHHHHHHHHHHhch------h-c--h-----HHHHHHHHHHHHhhcCCCCCccCHH
Q psy12124 13 FNKKILDELIEEVDADK--SGRLEFDEFVTLAAKFIVE------E-D--D-----EAMQKELREAFRLYDKDGNGYIPTS 76 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~--~g~i~~~ef~~~~~~~~~~------~-~--~-----~~~~~~~~~~f~~~D~~~~g~i~~~ 76 (115)
++-..+.+.|+....+. +..++..+....+...... . . + ....-.+..+...||++++|.|+.-
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vl 117 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVL 117 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehh
Confidence 34556777777775543 3569999998887776621 0 0 1 1222346667899999999999999
Q ss_pred HHHHHHHHh
Q psy12124 77 CLKEILREL 85 (115)
Q Consensus 77 e~~~~l~~~ 85 (115)
.++.++..+
T Consensus 118 s~KvaL~~L 126 (127)
T PF09068_consen 118 SFKVALITL 126 (127)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999887653
No 128
>KOG1029|consensus
Probab=88.53 E-value=1.6 Score=32.04 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 14 NKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
+.-...++|..+|+...|+++=..=..++...... ...+..++..-|.|++|.++.+||...+..
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp------q~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP------QNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcCCc------hhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34456789999999999998866655554433222 467888999999999999999999887654
No 129
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.32 E-value=1.6 Score=25.32 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=31.0
Q ss_pred HHHHHHhC---CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHh
Q psy12124 3 ADILRLMG---QPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFI 46 (115)
Q Consensus 3 ~~~l~~l~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 46 (115)
.++++.-+ ..++...+.-+|..+...+...|+|++|+.++..+.
T Consensus 25 ~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 25 AKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 34454443 347889999999998776777899999999887664
No 130
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.22 E-value=2.5 Score=22.26 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHh-------CC----CCCHHHHHHHHHhh
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILREL-------DD----QLTNEELDGMIDEI 101 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~ 101 (115)
++.+-+|..+ .+++|.++...|..+|..+ |+ .-.+..++.+|...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~ 58 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV 58 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc
Confidence 4556666666 5677777777777766542 21 12566666777664
No 131
>KOG3866|consensus
Probab=88.06 E-value=0.46 Score=30.82 Aligned_cols=56 Identities=14% Similarity=0.386 Sum_probs=40.4
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHH-----hCCCCCHHH-----------HHHHHHhhCCCCCcceeccCC
Q psy12124 59 REAFRLYDKDGNGYIPTSCLKEILRE-----LDDQLTNEE-----------LDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 59 ~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~eF 114 (115)
+..|...|.+++|+++-.++...+.. +...-.+.. -+++++..|.|.|.-|+.+||
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEF 318 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEF 318 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHH
Confidence 34677789999999999999888765 122111111 246888899999998998887
No 132
>KOG3866|consensus
Probab=87.79 E-value=3.1 Score=27.19 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchh-----chHH----HHHH---HHHHHHhhcCCCCCccCHHH
Q psy12124 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEE-----DDEA----MQKE---LREAFRLYDKDGNGYIPTSC 77 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-----~~~~----~~~~---~~~~f~~~D~~~~g~i~~~e 77 (115)
|+.+..-.=+..|..+|.+++|.++-.++-++....+... .... ..+. -..+.+-.|.+.+..||.++
T Consensus 238 gLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleE 317 (442)
T KOG3866|consen 238 GLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEE 317 (442)
T ss_pred CCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHH
Confidence 3444444445556666888999999998888776554221 1111 1112 22367789999999999999
Q ss_pred HHHHHHH
Q psy12124 78 LKEILRE 84 (115)
Q Consensus 78 ~~~~l~~ 84 (115)
|...-..
T Consensus 318 FL~~t~~ 324 (442)
T KOG3866|consen 318 FLNDTDN 324 (442)
T ss_pred HHhhhhh
Confidence 8776544
No 133
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=87.37 E-value=2.8 Score=21.82 Aligned_cols=72 Identities=17% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC
Q psy12124 11 QPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDD 87 (115)
Q Consensus 11 ~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 87 (115)
+.++..+.+.+++..=. .+-.|.+.+|...+....+-... .....+=..+|--.+|+||.-||-.+.+-++.
T Consensus 2 frITK~eA~~FW~~~Fg-~r~IVPW~~F~~~L~~~h~~~~~----~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 2 FRITKAEAAEFWKTSFG-KRTIVPWSEFRQALQKVHPISSG----LEAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp ---SSHHHHHHHHHHHT-T-SEEEHHHHHHHHHHHS--SSH----HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred ceeccHHHHHHHHHHCC-CCeEeeHHHHHHHHHHhcCCCch----HHHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 35677888888888633 23569999999999988764321 22233335689999999999999888776653
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=86.14 E-value=6.6 Score=27.98 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCC----CCCccCHHHHHHHHHH
Q psy12124 12 PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD----GNGYIPTSCLKEILRE 84 (115)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 84 (115)
.....++..+|..+.. ++.++.++|..++........ ...+.+..++..|... ..|.++.+.|..+|..
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERH--AGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCcc--CCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4467899999999864 357999999999877764321 1134566677776533 3467999999998854
No 135
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=85.92 E-value=1.3 Score=16.58 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=10.9
Q ss_pred cCCCCCccCHHHHHHH
Q psy12124 66 DKDGNGYIPTSCLKEI 81 (115)
Q Consensus 66 D~~~~g~i~~~e~~~~ 81 (115)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5578888888776654
No 136
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=85.57 E-value=3.2 Score=20.75 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 31 GRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
-.+.|..+...+...... ....-+...|+.=+.+.|++++|.+.++.+
T Consensus 7 p~~~F~~L~~~l~~~l~~-------~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPP-------SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356777777777777652 233334444444478899999999998874
No 137
>KOG1265|consensus
Probab=83.21 E-value=14 Score=28.00 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhc------hHHHHHHHHHHHHhhcCC----CCCccCHHHHHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED------DEAMQKELREAFRLYDKD----GNGYIPTSCLKEILRE 84 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~------~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 84 (115)
..++..+|+.+..++.-+++..++..++....+... +.....+++.+.+.|.++ .+|.++.+-|.+.|.-
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 468999999998888889999999999887765422 122245677777877665 4688999999888853
No 138
>KOG0039|consensus
Probab=82.35 E-value=3.9 Score=29.53 Aligned_cols=73 Identities=25% Similarity=0.483 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh--------CCCCCHHHHHHHHHhh
Q psy12124 30 SGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL--------DDQLTNEELDGMIDEI 101 (115)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~ 101 (115)
+| +++++|. ... .+..+.++..|.++|. ++|.++.+++..++... ....+.+....++...
T Consensus 2 ~~-~~~~~~~------~~~---~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (646)
T KOG0039|consen 2 EG-ISFQELK------ITD---CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEEL 70 (646)
T ss_pred CC-cchhhhc------ccC---CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhc
Confidence 45 7888888 111 2336788889999988 89999999998887652 1223445566777778
Q ss_pred CCCCCcceeccC
Q psy12124 102 DSDGSGTVDFDG 113 (115)
Q Consensus 102 d~~~~g~i~~~e 113 (115)
+.++.|.+.+++
T Consensus 71 ~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 71 DPDHKGYITNED 82 (646)
T ss_pred cccccceeeecc
Confidence 777777655544
No 139
>KOG3449|consensus
Probab=81.71 E-value=6.6 Score=21.47 Aligned_cols=43 Identities=23% Similarity=0.382 Sum_probs=37.6
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 60 EAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 60 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
.+|..++..++...+..++..+|...|.....+.++.++....
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 4677777888888999999999999999999999999998863
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=81.24 E-value=4.6 Score=28.79 Aligned_cols=69 Identities=7% Similarity=0.096 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcC-CCCCccCHHHHHHHHHH
Q psy12124 12 PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK-DGNGYIPTSCLKEILRE 84 (115)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~ 84 (115)
.....++..+|..+. +++.++.++|..++........ ...+.+..++..+.. .+.+.++.+.|..+|..
T Consensus 21 ~~~~~ei~~if~~~~--~~~~mt~~~l~~FL~~~Q~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 21 SEAPREIKTIFEKYS--ENGVMTVDHLHRFLIDVQKQDK--ATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcHHHHHHHHHhc--CCCCcCHHHHHHHHHHhcCCcc--CCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 346788888888885 3778888888888877765421 123345556665532 23566888888887743
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=80.29 E-value=6.2 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.309 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDD--QLTNEELDGMIDEIDSD----GSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~eF 114 (115)
...+..+|..+.. ++.++.++|..+|...+. ..+.+.+..++..+... ..|.++.+.|
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF 86 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAF 86 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHH
Confidence 5678889988864 368999999999988643 35567788888887643 2345666554
No 142
>PLN02952 phosphoinositide phospholipase C
Probab=79.67 E-value=21 Score=25.85 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=48.3
Q ss_pred HHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhh----c---CCCCCc
Q psy12124 2 VADILRLMGQ--PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY----D---KDGNGY 72 (115)
Q Consensus 2 l~~~l~~l~~--~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~----D---~~~~g~ 72 (115)
++.+.+.+.. .....++..+|..+.. +.+.++.++|..++......... ....+..++..+ . ..+.+.
T Consensus 22 f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~ 98 (599)
T PLN02952 22 FNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDC--TLAEAQRIVEEVINRRHHVTRYTRHG 98 (599)
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCC--CHHHHHHHHHHHHhhccccccccccC
Confidence 3344455532 2357899999999954 34689999999999887754210 112233333221 1 123345
Q ss_pred cCHHHHHHHHH
Q psy12124 73 IPTSCLKEILR 83 (115)
Q Consensus 73 i~~~e~~~~l~ 83 (115)
++.+.|..+|.
T Consensus 99 l~~~~F~~~l~ 109 (599)
T PLN02952 99 LNLDDFFHFLL 109 (599)
T ss_pred cCHHHHHHHHc
Confidence 89999998885
No 143
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=79.57 E-value=4.5 Score=19.82 Aligned_cols=38 Identities=32% Similarity=0.522 Sum_probs=25.8
Q ss_pred HhhcCCCCCccCHHHHHHHHHH----------hCCCCCHHHHHHHHHh
Q psy12124 63 RLYDKDGNGYIPTSCLKEILRE----------LDDQLTNEELDGMIDE 100 (115)
Q Consensus 63 ~~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~ 100 (115)
+.||...+.+|+.+++..+... -|..++..-+-.++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 3578888888998888888865 1555555555555444
No 144
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.16 E-value=6.8 Score=19.46 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=11.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q psy12124 4 DILRLMGQPFNKKILDELIEE 24 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~ 24 (115)
.+++.-|..++++++..+++.
T Consensus 21 ~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 21 EIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHcCCccCHHHHHHHHCC
Confidence 344444555555555555555
No 145
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.48 E-value=16 Score=26.20 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCcceeccCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDD--QLTNEELDGMIDEIDS-DGSGTVDFDGK 114 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~eF 114 (115)
...+..+|..+.. ++.++.++|..+|...+. ..+.+.+..++..+.. ...+.++++.|
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF 84 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAF 84 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHH
Confidence 3577888888854 478999999999988544 3567777777776532 12344555544
No 146
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=77.31 E-value=6.7 Score=22.61 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=8.1
Q ss_pred CCCCccCHHHHHHH
Q psy12124 68 DGNGYIPTSCLKEI 81 (115)
Q Consensus 68 ~~~g~i~~~e~~~~ 81 (115)
+.+|..+...|..+
T Consensus 131 ~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 131 PQTGQFDRAKLKQF 144 (145)
T ss_pred cccCCcCHHHHHhh
Confidence 36666666665544
No 147
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.63 E-value=7.8 Score=19.36 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
.++.+..+= ..+-.|+.+-++.++...|.+.++..+..+++..-
T Consensus 25 ark~~~k~l-k~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 25 ARKQMKKQL-KDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 334444442 34568999999999999999999999999988753
No 148
>PRK00523 hypothetical protein; Provisional
Probab=76.09 E-value=8.3 Score=19.40 Aligned_cols=43 Identities=7% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
.+..|+.+= ..+-.|+.+.++.++..+|.++++..++.+.+..
T Consensus 26 ark~~~k~l-~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 26 SKKMFKKQI-RENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHH-HHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344455442 3456899999999999999999999999998876
No 149
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=76.02 E-value=11 Score=20.78 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=34.2
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 61 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
+|...-..++..+|.+++..+|...|..+....+..++..+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 455555667778999999999999999998888888887764
No 150
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.18 E-value=8.3 Score=18.95 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 59 REAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 59 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
+..|+.+= ..+-.|+.+.++.++..+|..+++..+..+.+..
T Consensus 19 r~~~~k~l-~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 19 RKYMEKQL-KENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34444432 3456799999999999999999999999988765
No 151
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=74.54 E-value=9.1 Score=19.13 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhc
Q psy12124 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 47 (115)
.++..+.-.+..+.+..+...|+.-..++|+-++|+..+.....
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34555555566677777777776667899999999999888765
No 152
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=73.72 E-value=11 Score=19.68 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=37.9
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhh
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~ 65 (115)
||.+.-+..|+++++++++.+....-..+-.-.+-++=..++.....- +++.....++.+|.-|
T Consensus 19 eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~i-T~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 19 ELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKI-TSPQTAKQVNELFEQF 82 (85)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 456666777888888888888888755555555555555444443322 2233345555565544
No 153
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=73.65 E-value=12 Score=20.05 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHH
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEELDG 96 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~ 96 (115)
++..+-..+-..+...++..++...+..+ +...+++++..
T Consensus 40 ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~R 80 (96)
T PF11829_consen 40 EVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIER 80 (96)
T ss_dssp HHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHH
Confidence 33333333333344444555555555553 33344444443
No 154
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=73.63 E-value=4.9 Score=27.70 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=23.5
Q ss_pred HHhhcCCCCCcc--CHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12124 62 FRLYDKDGNGYI--PTSCLKEILRELDDQLTNEELDGMIDE 100 (115)
Q Consensus 62 f~~~D~~~~g~i--~~~e~~~~l~~~~~~~~~~~~~~~~~~ 100 (115)
-.+||.+++..| ....|+.++..++..+..+.++.+...
T Consensus 357 ~M~FD~ERSD~VyKiLnKlK~v~st~~~~V~hQSLDdi~~~ 397 (445)
T PF13608_consen 357 MMMFDAERSDCVYKILNKLKGVFSTMGQDVRHQSLDDIEDI 397 (445)
T ss_pred HHHhCchhhHHHHHHHHHHHHHHhccCCCccCCCccchhhh
Confidence 356888887754 445677777777765544444444433
No 155
>PLN02230 phosphoinositide phospholipase C 4
Probab=72.53 E-value=34 Score=24.82 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhh-------cCCCCCccCHHHHHHHHHH
Q psy12124 14 NKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY-------DKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~-------D~~~~g~i~~~e~~~~l~~ 84 (115)
...++..+|..+..++ +.++.++|..++......... ...+.+..++..+ ..-+.+.++.+.|..+|..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGE-TSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCccc-CCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4679999999996444 799999999999887742110 0122233333322 2224557999999998854
No 156
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=71.26 E-value=8.3 Score=21.01 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=8.2
Q ss_pred CCCCCCcccHHHHHHHH
Q psy12124 26 DADKSGRLEFDEFVTLA 42 (115)
Q Consensus 26 d~~~~g~i~~~ef~~~~ 42 (115)
|...+.+|++++....+
T Consensus 13 DT~tS~YITLedi~~lV 29 (107)
T TIGR01848 13 DTETSSYVTLEDIRDLV 29 (107)
T ss_pred CCCccceeeHHHHHHHH
Confidence 44444455555554443
No 157
>KOG4070|consensus
Probab=70.39 E-value=18 Score=21.19 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHh----CCCCCCc-ccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 10 GQPFNKKILDELIEEV----DADKSGR-LEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~----d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
+..+..+.+.+-|+.| |+..+|. ++-..|-.++..........-.....-.+|..+--..-+.+++++|+.+|..
T Consensus 6 ~~s~~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 6 AASPDMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEE 85 (180)
T ss_pred ccCcchhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHH
Confidence 3445556677777777 3334443 5544454444332211100000122334566665566678999999999987
Q ss_pred hCC-----CCCHHHHHHHHHhh
Q psy12124 85 LDD-----QLTNEELDGMIDEI 101 (115)
Q Consensus 85 ~~~-----~~~~~~~~~~~~~~ 101 (115)
+.. ...+++++.+....
T Consensus 86 la~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 86 LATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred HHHhhhcCCCHHHHHHHHHHHH
Confidence 642 45556666555443
No 158
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=70.35 E-value=10 Score=18.56 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q psy12124 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 105 (115)
.++.++..++...|...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 5567889999999888888888888888888877553
No 159
>KOG4004|consensus
Probab=69.98 E-value=1.5 Score=26.63 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHH
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEI 81 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~ 81 (115)
.......|+-.|.+++|+|+.+|....
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhcc
Confidence 344555667777777777777665544
No 160
>PRK01844 hypothetical protein; Provisional
Probab=69.28 E-value=13 Score=18.72 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
.++.|+.+= .++-.|+.+-++.++...|.++++..++.+.+..
T Consensus 25 ark~~~k~l-k~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 25 ARKYMMNYL-QKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHH-HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344455442 3456899999999999999999999999998876
No 161
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=68.78 E-value=12 Score=22.50 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=23.2
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 66 DKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 66 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
..+.+|+++.+++...+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4578899999999888887666788888888887654
No 162
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=68.68 E-value=14 Score=18.66 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCC-CCCCcccHHHHHHHHHH
Q psy12124 15 KKILDELIEEVDA-DKSGRLEFDEFVTLAAK 44 (115)
Q Consensus 15 ~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~~ 44 (115)
.+++......+.. -..|++.-+||..++..
T Consensus 12 ~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 12 AEEADGALIQLSQMLASGKLRGEEINSLLEA 42 (75)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 3444444444422 25677777777666543
No 163
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=67.95 E-value=12 Score=19.59 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 70 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
.-.|+-.+|+..|.......+..+...+=..+|...++.||.=||
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhh
Confidence 457999999999998755455566677778889999999985443
No 164
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=67.18 E-value=19 Score=19.75 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=33.2
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 61 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
+|.+.-..++..+|.+++..+|...|..+....+..+++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 455555667778999999999999998888888777777663
No 165
>PLN02230 phosphoinositide phospholipase C 4
Probab=66.92 E-value=31 Score=24.98 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhh
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDD---QLTNEELDGMIDEI 101 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~ 101 (115)
...+..+|..|..++ +.++.++|..+|...+. ..+.+.+..++..+
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 568899999996444 89999999999988652 34667777777654
No 166
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=66.48 E-value=9.2 Score=19.57 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=18.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
..|+||+.++..+|... .++.+.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 46788888888887643 366677777776653
No 167
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=64.43 E-value=25 Score=20.11 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=35.9
Q ss_pred CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 29 KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
+...++.++|+.-+........+......+..+|..++ ..|+..++.++...+
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~----r~Is~gei~~v~s~L 124 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLK----RHISPGEIDKVRSRL 124 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH----HhCCHHHHHHHHHHC
Confidence 45678889999888877766554444445557788774 367777777776654
No 168
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=64.30 E-value=20 Score=19.00 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=45.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHH---HHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy12124 3 ADILRLMGQPFNKKILDELIEEVDADKSGRLEFD---EFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLK 79 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~---ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 79 (115)
...++++...++..-+.++++..... +|+-. ++...+.... ..-...+...-...+.-+|..+++.
T Consensus 10 r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~~--------~~i~~~A~~~A~ha~RKTV~~~DI~ 78 (91)
T COG2036 10 RRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEYL--------EEIAEDAVELAEHAKRKTVKAEDIK 78 (91)
T ss_pred HhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHcCCCeecHHHHH
Confidence 34455555566666788888887544 44433 3333333222 2344455555666777789999999
Q ss_pred HHHHHhCCC
Q psy12124 80 EILRELDDQ 88 (115)
Q Consensus 80 ~~l~~~~~~ 88 (115)
.+++..+..
T Consensus 79 la~~~~~~~ 87 (91)
T COG2036 79 LALKRLGRR 87 (91)
T ss_pred HHHHHhccc
Confidence 988877643
No 169
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=64.10 E-value=39 Score=22.40 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=55.3
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 5 ILRLMGQPFNKKILDELIEEVDAD--KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
.+..+.+.+.++|++.|+..+-.| ..-.+--++|-+.+..... +.....+..+-+.....=+|.+-..|+.+-+
T Consensus 24 ~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~----e~r~~FidFLerScTaEFSGflLYKEl~rrl 99 (337)
T TIGR02029 24 EMANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDG----ELRQAFIEFLERSCTSEFSGFLLYKELSRRL 99 (337)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHhc
Confidence 456677888899999999998444 4445667778775554321 1122333334445556668888888887765
Q ss_pred HHhCCCCCHHHHHHHHHhhCCC
Q psy12124 83 RELDDQLTNEELDGMIDEIDSD 104 (115)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~d~~ 104 (115)
+. .+..+.++|..+..|
T Consensus 100 k~-----~~P~lae~F~~MaRD 116 (337)
T TIGR02029 100 KN-----RDPVVAELFQLMARD 116 (337)
T ss_pred CC-----CChHHHHHHHHHhhh
Confidence 43 223455555555443
No 170
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=63.38 E-value=24 Score=21.21 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 67 KDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 67 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
.+.+|.++.+++...+..-+..++.+.+..++..-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 467888888888877765555677777777776543
No 171
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=62.10 E-value=17 Score=17.57 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.2
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHH
Q psy12124 72 YIPTSCLKEILRELDDQLTNEELDGM 97 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 97 (115)
.|+.++|..+|+.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888888777887776543
No 172
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=61.62 E-value=8.7 Score=19.61 Aligned_cols=44 Identities=16% Similarity=0.411 Sum_probs=32.3
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceecc
Q psy12124 68 DGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112 (115)
Q Consensus 68 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 112 (115)
+.+|.=+-.+|-.+|..+|..+-+..++-+++.+.. ..|.+-++
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR-~tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR-STGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc-ccCceecC
Confidence 345566666788888888988888888888888753 46666554
No 173
>KOG0042|consensus
Probab=59.50 E-value=28 Score=25.17 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred hCCCCCHHHHHHH---HHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 9 MGQPFNKKILDEL---IEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 9 l~~~~~~~~~~~l---~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
.-+.+++++++.. |..+|.+..|.+.....+..+...... ...+......+-.|...+|.+...++.+++..+
T Consensus 583 ~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~----~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 583 IPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVG----WDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred cccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 3455666665544 444577778888888888777766522 224555555556666668888888888888775
Q ss_pred CCCCC
Q psy12124 86 DDQLT 90 (115)
Q Consensus 86 ~~~~~ 90 (115)
...-+
T Consensus 659 ~~g~~ 663 (680)
T KOG0042|consen 659 KNGCT 663 (680)
T ss_pred hcCCh
Confidence 44333
No 174
>KOG2243|consensus
Probab=59.42 E-value=32 Score=28.23 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=41.7
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 20 ELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 20 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
.-|+.+|+++.|.|+..+|..++.....- ....+..+...-..+.+...++.+|..-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~y-----tqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHY-----TQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccc-----hhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 45777899999999999999988765432 23444455556666777788888876644
No 175
>KOG0998|consensus
Probab=58.52 E-value=14 Score=27.83 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
....|+..|..++|.|+-.+-..++...| +....+..+....|..+.|.++..+|
T Consensus 13 ~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f 67 (847)
T KOG0998|consen 13 FDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGF 67 (847)
T ss_pred HHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccc
Confidence 33455555555555555555554443332 44444444444455544455544444
No 176
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.10 E-value=26 Score=18.22 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHhC
Q psy12124 10 GQPFNKKILDELIEEVD 26 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~d 26 (115)
+..+|+.++..+++.+-
T Consensus 44 ~r~YsEkeVN~ii~ryh 60 (89)
T COG3860 44 ERQYSEKEVNLIIKRYH 60 (89)
T ss_pred ccccCHHHHHHHHHHhC
Confidence 56788888888888874
No 177
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=56.37 E-value=8 Score=15.84 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=12.8
Q ss_pred HHHHHhhCCCCCcceeccC
Q psy12124 95 DGMIDEIDSDGSGTVDFDG 113 (115)
Q Consensus 95 ~~~~~~~d~~~~g~i~~~e 113 (115)
+.++..=|.|++-+|+.++
T Consensus 2 ~~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIED 20 (30)
T ss_pred hhHhhccccCCCcEEEEec
Confidence 3455666777787787764
No 178
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=55.91 E-value=34 Score=18.94 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=31.8
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 61 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
+|.+.-..++..+|.+++..+|...|..+....+..++..+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344444456677999999999999998888888777777663
No 179
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=55.90 E-value=59 Score=21.75 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=55.4
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 5 ILRLMGQPFNKKILDELIEEVDA--DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
.+..+.+.+..+|++.|+..+-. +..-.+--++|.+.+..... +.....+..+-+.....=+|.+-..|+.+-+
T Consensus 30 ~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~----e~r~~FidFLerScTaEFSGflLYKEl~rrl 105 (351)
T CHL00185 30 EMANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDE----KTKSLFVEFLERSCTAEFSGFLLYKELSRKL 105 (351)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Confidence 45567788889999999999844 44445777788775554421 1122233334445556668888888888876
Q ss_pred HHhCCCCCHHHHHHHHHhhCCC
Q psy12124 83 RELDDQLTNEELDGMIDEIDSD 104 (115)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~d~~ 104 (115)
+.-+ ..+.++|..+..|
T Consensus 106 k~~n-----P~lae~F~lMaRD 122 (351)
T CHL00185 106 KDKN-----PLLAEGFLLMSRD 122 (351)
T ss_pred ccCC-----cHHHHHHHHHhhh
Confidence 5321 3445555555443
No 180
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=55.18 E-value=34 Score=18.78 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=9.7
Q ss_pred hcCCCCCccCHHHHHHHHHH
Q psy12124 65 YDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 65 ~D~~~~g~i~~~e~~~~l~~ 84 (115)
++.-..|.|+.......|..
T Consensus 78 i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 78 IEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHHHcCCccHHHHHHHHHH
Confidence 33334555555555544433
No 181
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=53.99 E-value=26 Score=17.00 Aligned_cols=38 Identities=11% Similarity=0.337 Sum_probs=19.7
Q ss_pred HHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy12124 2 VADILRLM--GQPFNKKILDELIEEVDADKSGRLEFDEFVTLA 42 (115)
Q Consensus 2 l~~~l~~l--~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 42 (115)
++.+++.+ |.+++.+++..++..+- +|.++-.+...++
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i~---~g~~s~~qiaAfL 41 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAIL---DGEVSDAQIAAFL 41 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHH---TTSS-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH---cCCCCHHHHHHHH
Confidence 45666666 56778888888888773 4444444444333
No 182
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=53.93 E-value=37 Score=18.83 Aligned_cols=63 Identities=17% Similarity=0.370 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHh-------------CCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhh
Q psy12124 3 ADILRLMGQPFNKKILDELIEEV-------------DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~-------------d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~ 65 (115)
+.+|..|+-.++..+...+-..+ .....+.++..+|+.-+...............++.+|..+
T Consensus 26 ~avL~~L~~rL~~~ea~~La~qLP~~l~~~l~~gw~~~~~~~~~~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l 101 (125)
T PF10025_consen 26 RAVLHTLRERLPPEEAADLAAQLPMELRGILYEGWRPSEGPGRFDLDEFLARVAERLGGADEDDAERLARAVFAAL 101 (125)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTS-HHHHHHHHTT--TTS-----SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHhCCHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHccCCCcccHHHHHHHHHHHH
Confidence 45566666666655443333221 1123334888888888887544322223344555555554
No 183
>KOG4286|consensus
Probab=53.57 E-value=13 Score=27.60 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 105 (115)
.++..++.||..++|.|..-+|+..+-.+.....++....+|.....++
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASST 519 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCch
Confidence 4677889999999999999999998887766666777778888865443
No 184
>KOG1707|consensus
Probab=53.04 E-value=76 Score=23.15 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Q psy12124 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRE-LDDQLTNEELDGMIDEI 101 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~ 101 (115)
...-+..+|...|.+.+|.++-.|+..+=.. ++.++...+++.+....
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv 241 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVV 241 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999998887655 57777777666554443
No 185
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=52.43 E-value=41 Score=18.91 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q psy12124 54 MQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEELDGMIDEI 101 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 101 (115)
....+..++++|- .+.|+.+.+...+.+. |..++..++..+...+
T Consensus 35 f~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 35 FLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 3456666777764 4567777777777665 4567776666655554
No 186
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=52.37 E-value=70 Score=21.51 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 5 ILRLMGQPFNKKILDELIEEVDA--DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
.+..+.+.+..+|++.|+..+-. +..-.+--++|.+.+..... +.....+..+-+.....=+|.+-+.|+.+-+
T Consensus 34 ~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~----e~r~~FidFLerSctaEFSGflLYKEl~rrl 109 (355)
T PRK13654 34 AMAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDP----ETRKEFIDFLERSCTAEFSGFLLYKELSRRL 109 (355)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCH----HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhc
Confidence 45667788889999999999844 44445667778775554421 1122233334445556668888888888766
Q ss_pred HHhCCCCCHHHHHHHHHhhCCC
Q psy12124 83 RELDDQLTNEELDGMIDEIDSD 104 (115)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~d~~ 104 (115)
+.- ...+.++|..+..|
T Consensus 110 k~~-----nP~lae~F~lMaRD 126 (355)
T PRK13654 110 KDR-----NPLLAELFQLMARD 126 (355)
T ss_pred ccc-----CcHHHHHHHHHhhh
Confidence 432 23455555555443
No 187
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=52.26 E-value=21 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDD 87 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 87 (115)
++..+++|-.||+.+=-..+-+++.++|...|.
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 578899999999999888999999999877654
No 188
>KOG4403|consensus
Probab=51.98 E-value=10 Score=26.14 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhc
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 47 (115)
+-+..+.+.+|.|.+|.|+.+|=-.++..-+.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk 99 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMK 99 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhh
Confidence 34555555555555555555555544444443
No 189
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=51.21 E-value=29 Score=16.73 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=18.2
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12124 72 YIPTSCLKEILRELDDQLTNEELDGMIDE 100 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 100 (115)
.+|.+|+..++..++..++..++-.++..
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQ 37 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 46666777777777666666665554443
No 190
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=50.96 E-value=54 Score=20.15 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHH-HHHHHHHhCC
Q psy12124 29 KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC-LKEILRELDD 87 (115)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e-~~~~l~~~~~ 87 (115)
=+|.|+.+++...+...... ..++ ..++.--++.||..+ |.+++..++.
T Consensus 10 FDGTITl~Ds~~~itdtf~~-------~e~k---~l~~~vls~tiS~rd~~g~mf~~i~~ 59 (220)
T COG4359 10 FDGTITLNDSNDYITDTFGP-------GEWK---ALKDGVLSKTISFRDGFGRMFGSIHS 59 (220)
T ss_pred CCCceEecchhHHHHhccCc-------hHHH---HHHHHHhhCceeHHHHHHHHHHhcCC
Confidence 47889999998888777653 2233 333334566676544 4445555543
No 191
>PRK09389 (R)-citramalate synthase; Provisional
Probab=50.56 E-value=54 Score=23.13 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHh
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDA--DKSGRLEFDEFVTLAAKFI 46 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~ 46 (115)
++..|+.+|+.+++.++..++..+.. +..+.++-.++..++....
T Consensus 323 v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 323 LKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 35667889999999889988888744 2344688888877775544
No 192
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=50.01 E-value=56 Score=19.71 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCC--cccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCC-HHHH
Q psy12124 18 LDELIEEVDADKSG--RLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLT-NEEL 94 (115)
Q Consensus 18 ~~~l~~~~d~~~~g--~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-~~~~ 94 (115)
+..++...-+ +.| .++.+.|+..+........ +...+....+=..+-......||..+|..++..+|..-+ ...+
T Consensus 21 vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~-q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~~tim~KI 98 (181)
T PF11422_consen 21 VISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPS-QSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPEETIMEKI 98 (181)
T ss_dssp HHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TT-S-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSGGGHHHHH
T ss_pred HHHHHHHHhc-CCCcceeeHHHHHHHHHHHhcccc-ccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCchhHHHHH
Confidence 3334444433 555 7999999988887773321 111222222223444556789999999999999996433 3344
Q ss_pred HHHH
Q psy12124 95 DGMI 98 (115)
Q Consensus 95 ~~~~ 98 (115)
..++
T Consensus 99 ~~lL 102 (181)
T PF11422_consen 99 HSLL 102 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 193
>PHA02105 hypothetical protein
Probab=49.68 E-value=30 Score=16.57 Aligned_cols=42 Identities=5% Similarity=-0.035 Sum_probs=17.7
Q ss_pred cCHHHHHHHHHHh---CCCCCHHHHHHHHHhhCCCC--CcceeccCC
Q psy12124 73 IPTSCLKEILREL---DDQLTNEELDGMIDEIDSDG--SGTVDFDGK 114 (115)
Q Consensus 73 i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~g~i~~~eF 114 (115)
++.+++..++..- ..++..+-++.+-..+.... --.++|+||
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~ 51 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEF 51 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHh
Confidence 4455555555431 12334444444444443322 223555554
No 194
>PLN02223 phosphoinositide phospholipase C
Probab=48.48 E-value=53 Score=23.54 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
+.++.+|..+. .+.|.++.+.+.++|
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl 41 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFI 41 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHH
Confidence 34455555552 444555555555555
No 195
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=48.26 E-value=34 Score=19.41 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=16.1
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCC-CCCCcccHHHHHHHHH
Q psy12124 4 DILRLMGQPFNKKILDELIEEVDA-DKSGRLEFDEFVTLAA 43 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~ 43 (115)
+..+..|+.++++++...+..... ..+|..+-+.|..++.
T Consensus 91 q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~ 131 (154)
T PF13624_consen 91 QEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLK 131 (154)
T ss_dssp HHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 344566777777777776666310 0124445555555443
No 196
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=48.05 E-value=23 Score=14.65 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=10.7
Q ss_pred CCccCHHHHHHHHHH
Q psy12124 70 NGYIPTSCLKEILRE 84 (115)
Q Consensus 70 ~g~i~~~e~~~~l~~ 84 (115)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 567777777777654
No 197
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=47.88 E-value=55 Score=20.56 Aligned_cols=36 Identities=3% Similarity=0.184 Sum_probs=16.9
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy12124 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 40 (115)
++..+++.+++.+++.+...+..-.+-.+++.+|..
T Consensus 184 ~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ 219 (225)
T PF06207_consen 184 VLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKE 219 (225)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344445555555555555554433333344444443
No 198
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=47.53 E-value=21 Score=16.09 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.0
Q ss_pred HHHHhCCCCCHH
Q psy12124 5 ILRLMGQPFNKK 16 (115)
Q Consensus 5 ~l~~l~~~~~~~ 16 (115)
+.+..|+.+|.+
T Consensus 35 lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 35 LAREAGYDFTEE 46 (49)
T ss_pred HHHHcCCCCCHH
Confidence 334444444443
No 199
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=47.43 E-value=30 Score=15.80 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDE 100 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 100 (115)
...+...|.. +.+.+..+...+...+| ++...|..+|..
T Consensus 12 ~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 3455556665 55888888888888877 888888888865
No 200
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=46.51 E-value=16 Score=21.57 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
.++..++..+-.++...++..+|...+. .|..++++++...+..+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 4677777777666666788888777653 46678888888776654
No 201
>KOG2301|consensus
Probab=45.71 E-value=23 Score=28.83 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q psy12124 53 AMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ 88 (115)
Q Consensus 53 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 88 (115)
...+....++..||++..|.|...++..+++.+..+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~pp 1449 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPP 1449 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCc
Confidence 345678889999999999999999999999986443
No 202
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=45.70 E-value=88 Score=20.74 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 5 ILRLMGQPFNKKILDELIEEVDA--DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
.+..+.+.+..+|++.|+..+-. +..-.+--++|......... +.....+..+-+.....=+|.+-..|+.+-+
T Consensus 14 ~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~----e~r~~FidFLerSctaEFSGflLYKEl~rrl 89 (323)
T cd01047 14 EMAALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDP----ELRQIFLEFLERSCTSEFSGFLLYKELGRRL 89 (323)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCH----HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHc
Confidence 35567788889999999999844 44445667778776554321 1122333334445556668888888888766
Q ss_pred HHhCCCCCHHHHHHHHHhhCCC
Q psy12124 83 RELDDQLTNEELDGMIDEIDSD 104 (115)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~d~~ 104 (115)
+.-+ ..+.++|..+..|
T Consensus 90 k~~n-----P~lae~F~lMaRD 106 (323)
T cd01047 90 KNTN-----PVVAELFRLMARD 106 (323)
T ss_pred ccCC-----cHHHHHHHHHhhh
Confidence 4422 3455555555443
No 203
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=45.69 E-value=24 Score=18.10 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=11.6
Q ss_pred CHHHHHHHhCCCCCHHHHHH
Q psy12124 1 MVADILRLMGQPFNKKILDE 20 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~ 20 (115)
|+..+|+.||-.+++++..=
T Consensus 21 EIL~ALrkLge~Ls~eE~~F 40 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAF 40 (78)
T ss_dssp HHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 45678889998888877653
No 204
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=45.12 E-value=46 Score=17.37 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHhCCCCCCccc---HHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q psy12124 12 PFNKKILDELIEEVDADKSGRLE---FDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ 88 (115)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 88 (115)
.++..-+.+|.+.. +-.+|+ +++....+.... .+-++.+-..-.-.+.-.|+.+++..+++..|.+
T Consensus 13 gi~k~~I~RLarr~---GvkRIS~d~y~e~~~~l~~~l--------~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRG---GVKRISGGVYDEVRNVLKSYL--------EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHc---CcchhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 46677788888875 344565 556665555544 2344444444444566679999999999888754
Q ss_pred C
Q psy12124 89 L 89 (115)
Q Consensus 89 ~ 89 (115)
+
T Consensus 82 ~ 82 (85)
T cd00076 82 L 82 (85)
T ss_pred c
Confidence 3
No 205
>KOG0506|consensus
Probab=44.82 E-value=1.1e+02 Score=21.79 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHh---CC----CC-CCcccHHHHHHHHHHHhchh---------ch--HHHHHHHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEV---DA----DK-SGRLEFDEFVTLAAKFIVEE---------DD--EAMQKELREAF 62 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~---d~----~~-~g~i~~~ef~~~~~~~~~~~---------~~--~~~~~~~~~~f 62 (115)
|-.+|+++|+.-++..++.++..+ +. .+ .+.++.+.|...+.....-. .+ +.....+..+|
T Consensus 108 FiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkqmVIPdw~~Fts~I~tIF 187 (622)
T KOG0506|consen 108 FITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQMVIPDWEEFTSHIDTIF 187 (622)
T ss_pred HHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcCccCCcHHHHHHHHHHHH
Confidence 457899999988876666666554 42 23 45799999998754322110 01 12224566677
Q ss_pred HhhcCCCCCcc
Q psy12124 63 RLYDKDGNGYI 73 (115)
Q Consensus 63 ~~~D~~~~g~i 73 (115)
+..-....|.+
T Consensus 188 Escke~seG~v 198 (622)
T KOG0506|consen 188 ESCKESSEGKV 198 (622)
T ss_pred HHHHhcCCccH
Confidence 77666666654
No 206
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=44.52 E-value=46 Score=17.19 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhch
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVE 48 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 48 (115)
+++.+...|...++.=..|.++.++|+..+......
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~elLnt 51 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFELLNT 51 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc
Confidence 566666666666655466778888888777766654
No 207
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=43.94 E-value=46 Score=16.98 Aligned_cols=32 Identities=25% Similarity=0.644 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCCcccHHHHHHH
Q psy12124 10 GQPFNKKILDELIEEVDAD-KSGRLEFDEFVTL 41 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~~-~~g~i~~~ef~~~ 41 (115)
|.+++.+.+...+..++.. --+.++.++++++
T Consensus 53 G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~ 85 (86)
T PF10437_consen 53 GCPYDREAIKEALNSVDLEDYFGNISVEELIEL 85 (86)
T ss_dssp TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHh
Confidence 6777777777777776443 3356777777655
No 208
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=43.75 E-value=54 Score=17.74 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcC---CCCCccCHHHHHHHHHHh
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK---DGNGYIPTSCLKEILREL 85 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~i~~~e~~~~l~~~ 85 (115)
-..++.=|..+.. +|.+....|-..+..... .+.+.++|..+-. -..+.|+.+|++.+...+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dS-------keFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDS-------KEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S--------HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCccc-------HHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4455666666544 899999999998876632 4566677766642 224679999999888765
No 209
>KOG1785|consensus
Probab=43.69 E-value=40 Score=23.20 Aligned_cols=69 Identities=14% Similarity=0.005 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 11 QPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 11 ~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
+.++.++....++..= ....-|.|..|.+.+.....-.. .-++..+=..+|...+++|+.-||-.+-+-
T Consensus 170 friTKadA~~FWr~~f-g~k~ivPW~~F~q~L~~~Hpi~~----gleAmaLktTIDLtcnd~iS~FEFDvFTRL 238 (563)
T KOG1785|consen 170 FRITKADAAEFWRKHF-GKKTIVPWKTFRQALHKVHPISS----GLEAMALKTTIDLTCNDFISNFEFDVFTRL 238 (563)
T ss_pred eeeccccHHHHHHHhc-CCcccccHHHHHHHHHhcCCCcc----hhHHHHhhceeccccccceeeehhhhHHHh
Confidence 4567778888888763 23446889999988877654311 122233344678888999988777654443
No 210
>PF14277 DUF4364: Domain of unknown function (DUF4364)
Probab=43.41 E-value=70 Score=18.93 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=31.4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhc
Q psy12124 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 47 (115)
-+|.+.+.++|.+++-.++-. +|.++|-.+++++.....
T Consensus 7 YiL~~v~~pltn~qit~~iL~-----~~~~nYF~lqq~l~eL~e 45 (163)
T PF14277_consen 7 YILKKVKFPLTNSQITEFILE-----NEYTNYFTLQQALSELVE 45 (163)
T ss_pred HHHHhCCCCCCHHHHHHHHHh-----cCcccHHHHHHHHHHHHH
Confidence 357788999999999988854 778889899888876653
No 211
>KOG4286|consensus
Probab=43.22 E-value=72 Score=24.09 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-------------
Q psy12124 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE------------- 84 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~------------- 84 (115)
+.=++..||+..+|.|..-+|.-.+..++.. ...+..+-+|.....+++..+ ...|...|..
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~----~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aA 546 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKA----HLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAA 546 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcc----hhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHh
Confidence 3556777899999999999999888887764 335677789998866665554 5555555543
Q ss_pred hCCCCCHHHHHHHHH
Q psy12124 85 LDDQLTNEELDGMID 99 (115)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (115)
+|..--+..++.+|.
T Consensus 547 fGgsNvepsvrsCF~ 561 (966)
T KOG4286|consen 547 FGGSNIEPSVRSCFQ 561 (966)
T ss_pred hcCCCCChHHHHHHH
Confidence 233333445667776
No 212
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=42.89 E-value=45 Score=16.64 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=14.9
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHh
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEV 25 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~ 25 (115)
||...|...|+.+|.+.+.+-++.+
T Consensus 24 eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 24 ELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp HHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchhHHHHHHHHc
Confidence 3556677777777777777776665
No 213
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=42.45 E-value=46 Score=16.54 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHH----hCCCCCHHHHHHHHHhh
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILRE----LDDQLTNEELDGMIDEI 101 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~----~~~~~~~~~~~~~~~~~ 101 (115)
..+..+...++....--+-..+++.++.. .|...+++-++.+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444555554443334555566666655 36667777888888765
No 214
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=42.44 E-value=53 Score=17.25 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLK 79 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 79 (115)
+++.+...+...+........++.+|...+...... ......+..+|.+- ..+|.++..|-.
T Consensus 34 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~l~~L~~vA--~ADG~~~~~E~~ 95 (104)
T cd07313 34 LDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY---EERLELVEALWEVA--YADGELDEYEEH 95 (104)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHH--HhcCCCCHHHHH
Confidence 345566666666544444456666776665554321 22233444445543 245666665543
No 215
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=42.31 E-value=36 Score=15.28 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 40 (115)
...+|.+||+. +.++....+.... ....+.++.+.
T Consensus 6 ~~~AL~~LGy~--~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 6 ALEALISLGYS--KAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHTTS---HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 34556666655 6677777777743 23344555443
No 216
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=41.74 E-value=22 Score=18.53 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=31.5
Q ss_pred hCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy12124 25 VDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEIL 82 (115)
Q Consensus 25 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 82 (115)
+|+...|...+.+|..-+...............++..+-.-|..-.|.-.-..|.++|
T Consensus 3 IdP~~egl~~~qq~~~~~~~~~~~~~~~~~~~~l~~~LG~QdV~V~Gip~~sh~ArvL 60 (84)
T PF07643_consen 3 IDPTPEGLKRLQQFLESSNSRSSPAGPAAWVDGLRQALGPQDVTVYGIPADSHFARVL 60 (84)
T ss_pred cCCCHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHhCCceeEEEccCCccHHHHHH
Confidence 4566667777777777666654333333334455555555554444554555555555
No 217
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=41.25 E-value=36 Score=15.00 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEE 24 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~ 24 (115)
|-.+|...++..|..+++++++.
T Consensus 3 Ld~~L~~~~~~~sr~~a~~~I~~ 25 (48)
T PF01479_consen 3 LDKFLSRLGLASSRSEARRLIKQ 25 (48)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHT
T ss_pred HHHHHHHcCCcCCHHHHHHhcCC
Confidence 34677788999999999998865
No 218
>KOG1785|consensus
Probab=41.21 E-value=1.2e+02 Score=21.07 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCc---cCHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGY---IPTSCL 78 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~---i~~~e~ 78 (115)
|.++|...+--.+--+...+-..+|...+++|+.-||--+...+.. ...+-+-+..+..-+.|+ ++++|+
T Consensus 196 F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP-------w~tllkNWq~LavtHPGYmAFLTYDEV 268 (563)
T KOG1785|consen 196 FRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP-------WKTLLKNWQTLAVTHPGYMAFLTYDEV 268 (563)
T ss_pred HHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc-------HHHHHHhhhhhhccCCceeEEeeHHHH
Confidence 3444444443334456666666778888888887777655443322 344555666677777775 788998
Q ss_pred HHHHHHh
Q psy12124 79 KEILREL 85 (115)
Q Consensus 79 ~~~l~~~ 85 (115)
+.-|..+
T Consensus 269 k~RLqk~ 275 (563)
T KOG1785|consen 269 KARLQKY 275 (563)
T ss_pred HHHHHHH
Confidence 8877654
No 219
>KOG0506|consensus
Probab=41.10 E-value=66 Score=22.86 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 60 EAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 60 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
-+|..|-...++.++.-.|..+|+..|..-++..++.++..+
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 367888666679999999999999999988887777776654
No 220
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=40.84 E-value=76 Score=22.59 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDAD--KSGRLEFDEFVTLAAK 44 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~ 44 (115)
++..++.+|+.++++++..++..+..- ..+.++-.|+..++..
T Consensus 432 v~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~ 476 (503)
T PLN03228 432 VKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVN 476 (503)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Confidence 356678889988888888888776331 2346888887777654
No 221
>KOG1954|consensus
Probab=40.69 E-value=26 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCCC
Q psy12124 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115 (115)
Q Consensus 70 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 115 (115)
+|+|+-..-+.-+ ....++..-+..+.+..|.|.||.++-+||.
T Consensus 457 ~gk~sg~~ak~~m--v~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 457 NGKLSGRNAKKEM--VKSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred CceeccchhHHHH--HhccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 4555443333322 2345677778888899999999999888873
No 222
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=40.32 E-value=45 Score=15.89 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 54 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
..+-++.+|..-. +.+.++..++...| +++..-+..+++... ..|-|.++.+
T Consensus 6 ~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~--~~GlV~~~~y 57 (60)
T PF01325_consen 6 EEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLA--EKGLVEYEPY 57 (60)
T ss_dssp HHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHH--HTTSEEEETT
T ss_pred HHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHH--HCCCEEecCC
Confidence 3567788888875 77889998888876 377788888888874 4566766543
No 223
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=39.47 E-value=40 Score=15.02 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhc-C-CCCCccCHHHHHHHHHH
Q psy12124 55 QKELREAFRLYD-K-DGNGYIPTSCLKEILRE 84 (115)
Q Consensus 55 ~~~~~~~f~~~D-~-~~~g~i~~~e~~~~l~~ 84 (115)
...+-.+|..|. + .....++..||+.++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345666777775 2 23568999999998865
No 224
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=38.87 E-value=68 Score=17.48 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 73 IPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 73 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
+|.+++..+|...|..+....+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999998888888775
No 225
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=38.67 E-value=70 Score=17.60 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=27.4
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 72 YIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
.|+-+.+..++...|..+.+..++.++....
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 8999999999999999999988888887764
No 226
>PTZ00015 histone H4; Provisional
Probab=38.24 E-value=69 Score=17.41 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q psy12124 12 PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ 88 (115)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 88 (115)
.++..-+.+|.+......-..--++|+..++.... .+-++.+-..-...+.-+|+.+++..+++..|.+
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l--------~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFL--------ENVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 35667788888876332222223555555555444 2345555555555566679999999998887753
No 227
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=38.08 E-value=48 Score=15.51 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=17.3
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12124 69 GNGYIPTSCLKEILRELDDQLTNEELDGMI 98 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 98 (115)
..|.|+..||..-+...-.-.+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 467777777777665544344444554444
No 228
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=37.99 E-value=28 Score=14.81 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=5.3
Q ss_pred HHHHHHHhCCC
Q psy12124 2 VADILRLMGQP 12 (115)
Q Consensus 2 l~~~l~~l~~~ 12 (115)
|+.+|...|+.
T Consensus 9 Lk~iL~~~~I~ 19 (35)
T PF12949_consen 9 LKRILDEHGIE 19 (35)
T ss_dssp HHHHHHHHT--
T ss_pred HHHHHHHcCCC
Confidence 55566666544
No 229
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=37.69 E-value=48 Score=17.53 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=10.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHh
Q psy12124 3 ADILRLMGQPFNKKILDELIEEV 25 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~ 25 (115)
+.+|+.-|+.++.+++..++..+
T Consensus 15 k~lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 15 KHLLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHHHCCT----HHHHHHHHHHH
T ss_pred HHHHHHcCeeecHHHHHHHHHHH
Confidence 34444446666666666655554
No 230
>PHA00003 B internal scaffolding protein
Probab=37.62 E-value=58 Score=17.87 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=26.2
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy12124 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 41 (115)
+-+.+|....++...+++..||++. -.|...||-.+
T Consensus 74 c~RrFGgAtcddksa~iya~FD~~d-~rVQpaEFYRF 109 (120)
T PHA00003 74 CARRFGGATCDDKSAKIYAQFDPND-RRVQPAEFYRF 109 (120)
T ss_pred HHHHcCCCCcchHHHHHhcccCccc-ceechhHheec
Confidence 4467788888888888888888754 46777777543
No 231
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=37.56 E-value=1.3e+02 Score=20.41 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCC---CCCcccHHHHHHHHHHH
Q psy12124 3 ADILRLMGQPFNKKILDELIEEVDAD---KSGRLEFDEFVTLAAKF 45 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~d~~---~~g~i~~~ef~~~~~~~ 45 (115)
+..|+.+|+.++++++..++..+..- ....++-+|+..++...
T Consensus 326 ~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~ 371 (378)
T PRK11858 326 KNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDV 371 (378)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45667778888877777777665221 22456777777666544
No 232
>PLN00035 histone H4; Provisional
Probab=36.62 E-value=75 Score=17.33 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHhCCCCCCccc---HHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q psy12124 13 FNKKILDELIEEVDADKSGRLE---FDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ 88 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 88 (115)
++..-+.+|.+... -.+|+ ++++..++.... ..-++.+...-...+--+|+.+++..+++..|.+
T Consensus 30 ipk~~IrRLARr~G---vkRIS~~ay~elr~vle~~l--------~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~~ 97 (103)
T PLN00035 30 ITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFL--------ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
T ss_pred CCHHHHHHHHHHcC---cccchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCCc
Confidence 55667778887753 33444 455555554443 2344445444444566679999999999887653
No 233
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=36.19 E-value=64 Score=16.42 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDADKS 30 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~~~ 30 (115)
+..++..||++-+++.+...+..+....+
T Consensus 8 l~~LF~QLGL~~~~~~I~~FI~~H~L~~~ 36 (74)
T PF10982_consen 8 LSNLFAQLGLDSSDEAIEAFIETHQLPAD 36 (74)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHS---TT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence 45678899999999999999988864333
No 234
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=34.92 E-value=73 Score=16.82 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=3.1
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 57 ELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 57 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
.+..+...-...|.+.|+.++|.-+++.
T Consensus 39 l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 39 LCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp HHHHHHC---------------------
T ss_pred HHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 3444444445567788999998888865
No 235
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=34.06 E-value=85 Score=17.21 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=26.7
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 72 YIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
.||.+++..+|...|..+.+..+..++..+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 799999999999999999888888887775
No 236
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=34.01 E-value=63 Score=17.36 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchh
Q psy12124 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEE 49 (115)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 49 (115)
+.++.++..+ -+|.|+.+||..-+....+..
T Consensus 27 ~~Vr~LV~~L---~~~~i~~EeF~~~Lq~~lns~ 57 (96)
T PF07531_consen 27 ENVRELVQNL---VDGKIEAEEFTSKLQEELNSS 57 (96)
T ss_dssp HHHHHHHHHH---HTTSS-HHHHHHHHHHHCTSS
T ss_pred HHHHHHHHHH---HcCCCCHHHHHHHHHHHhcCC
Confidence 4455555554 477788888888777766543
No 237
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=32.78 E-value=66 Score=15.53 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCC
Q psy12124 59 REAFRLYDKDGNGYIPTSCLKEILRELDDQL 89 (115)
Q Consensus 59 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 89 (115)
..+++.++.+...-++.++...-....|.+.
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 3455666655566667777777777766643
No 238
>KOG4301|consensus
Probab=32.73 E-value=1.6e+02 Score=20.03 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 20 ELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 20 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
-++..+|+.+.|+++.......+...+.+ ...+.++-+|.... +.+|.+..-.+-+++..
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~g----k~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGG----KIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccc----hHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 34445566677766665555555555442 23456666777663 45666666555555544
No 239
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=32.38 E-value=58 Score=14.83 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDE 100 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 100 (115)
..+...|.. +.+++..+...+...+| ++...|..+|..
T Consensus 13 ~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 13 KVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred HHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 344445542 66788888777777776 788888888753
No 240
>KOG3442|consensus
Probab=32.37 E-value=96 Score=17.59 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCc
Q psy12124 30 SGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGY 72 (115)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 72 (115)
.|.++++|=++++..... ...+........+|+.-|+...|.
T Consensus 53 ~~~iTlqEa~qILnV~~~-ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 53 NGKITLQEAQQILNVKEP-LNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccHHHHhhHhCCCCC-CCHHHHHHHHHHHHhccCcccCcc
Confidence 467999998888765532 222444566778899989887664
No 241
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=31.80 E-value=1.1e+02 Score=17.95 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
+..+...-+.+.++.|++..|..+++..+.. .+.+-|.. +...++.+++...+..
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd--------WIT~~~Lk----h~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLGD--------WITKNFLK----HPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhhh--------HHHHHHHh----ccchhhHHHHHHHHHH
Confidence 3333333233346779999999888777643 23322322 4556777777776654
No 242
>COG4086 Predicted secreted protein [Function unknown]
Probab=31.21 E-value=1.6e+02 Score=19.40 Aligned_cols=41 Identities=5% Similarity=0.093 Sum_probs=28.4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy12124 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (115)
.+...+|+.+++.++..+...+-...+-.++|.....-+..
T Consensus 221 dv~~~ynvnltd~qvn~i~~~~~~~~~~n~d~~kv~~~L~q 261 (299)
T COG4086 221 DVANNYNVNLTDTQVNQIVNLFLAMSNLNIDWTKVQGQLKQ 261 (299)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhhccCccHHHhhhHHHH
Confidence 45566788888888888887776555556777666655544
No 243
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=30.62 E-value=1.1e+02 Score=17.64 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=17.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q psy12124 73 IPTSCLKEILRELDDQLTNEELDGMIDEIDS 103 (115)
Q Consensus 73 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 103 (115)
.|..++..+..-+..+++++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3555555554444555666666666666553
No 244
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=30.46 E-value=70 Score=17.50 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=15.0
Q ss_pred HHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy12124 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAA 43 (115)
Q Consensus 6 l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 43 (115)
.+..|+.++++++...+..+-. ...++..+|...+.
T Consensus 60 ak~~gI~vsd~evd~~i~~ia~--~n~ls~~ql~~~L~ 95 (118)
T PF09312_consen 60 AKRLGIKVSDEEVDEAIANIAK--QNNLSVEQLRQQLE 95 (118)
T ss_dssp HHHCT----HHHHHHHHHHHHH--HTT--HHHHHHHCH
T ss_pred HHHcCCCCCHHHHHHHHHHHHH--HcCCCHHHHHHHHH
Confidence 3455666666666665555421 11235555555544
No 245
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=30.20 E-value=89 Score=16.27 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHhCCCCCHHHHH
Q psy12124 74 PTSCLKEILRELDDQLTNEELD 95 (115)
Q Consensus 74 ~~~e~~~~l~~~~~~~~~~~~~ 95 (115)
+.+++.++..-....++++++.
T Consensus 2 ~~~~v~~lA~La~L~l~eee~~ 23 (93)
T TIGR00135 2 SDEEVKHLAKLARLELSEEEAE 23 (93)
T ss_pred CHHHHHHHHHHhCCCCCHHHHH
Confidence 4455555555555556655543
No 246
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=30.13 E-value=1.9e+02 Score=20.59 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHh
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDAD--KSGRLEFDEFVTLAAKFI 46 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~ 46 (115)
+...|+.+|+.++++++..++..+..- ..+.++-.++..++....
T Consensus 334 i~~~l~~~g~~l~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~ 380 (494)
T TIGR00973 334 FKDRLEELGFKLDDEELDKLFEKFKELADKKKEVTDEDLEALVFEEK 380 (494)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Confidence 356678899999988888888876332 234688888887775443
No 247
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.05 E-value=2e+02 Score=20.31 Aligned_cols=39 Identities=13% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhc
Q psy12124 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47 (115)
Q Consensus 6 l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 47 (115)
+....-...+++.+.+...+ ..|.+++++|..-+.....
T Consensus 303 vEk~~~~~d~e~a~~~~~kl---~~g~FtL~Df~~Ql~~m~k 341 (451)
T COG0541 303 IEKAEEVVDEEEAEKLAEKL---KKGKFTLEDFLEQLEQMKK 341 (451)
T ss_pred HHHHHHhhhHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHc
Confidence 33333334445566666665 4677999999987665543
No 248
>KOG2871|consensus
Probab=29.86 E-value=43 Score=22.85 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 77 (115)
.+++.+.|..+|+.++|+|+-+-+..++...-..- .....+.-.=..+|+..-|.|-..+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v---se~a~v~l~~~~l~pE~~~iil~~d 367 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV---SEPAYVMLMRQPLDPESLGIILLED 367 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc---cCHHHHHHhcCccChhhcceEEecc
Confidence 57899999999999999999888887776553211 1122233333455666666665554
No 249
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=29.65 E-value=1.4e+02 Score=19.89 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=21.9
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q psy12124 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSD 104 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 104 (115)
..|.||++|-...++......+++.++.++..++.+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg~t 334 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLGIS 334 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhCCC
Confidence 466777777666666654445556666666665543
No 250
>PHA03102 Small T antigen; Reviewed
Probab=29.46 E-value=1.3e+02 Score=17.74 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCC----CHHHHHHHHHH----hCCCCCC
Q psy12124 1 MVADILRLMGQPF----NKKILDELIEE----VDADKSG 31 (115)
Q Consensus 1 el~~~l~~l~~~~----~~~~~~~l~~~----~d~~~~g 31 (115)
|+++++.-||+.+ +.++++.-++. +-||..|
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg 41 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG 41 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc
Confidence 5678888999875 55666655554 4555544
No 251
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=29.36 E-value=78 Score=18.01 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTL 41 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~ 41 (115)
..|++++++. ..|+|+|=...
T Consensus 87 k~EI~~IM~~------~~v~FDeARli 107 (128)
T PF09435_consen 87 KREIRRIMKR------RRVNFDEARLI 107 (128)
T ss_pred HHHHHHHHHH------cCCCHHHHHHH
Confidence 4556666544 25667664433
No 252
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=29.15 E-value=56 Score=13.60 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=10.9
Q ss_pred ccCHHHHHHHHHHhCCCC
Q psy12124 72 YIPTSCLKEILRELDDQL 89 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~ 89 (115)
.++..|++..++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 355667777777766543
No 253
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=29.04 E-value=1.1e+02 Score=16.83 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12124 74 PTSCLKEILRELDDQLTNEELDGMIDE 100 (115)
Q Consensus 74 ~~~e~~~~l~~~~~~~~~~~~~~~~~~ 100 (115)
+.+|++.++......+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 456666666666555666666665543
No 254
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=28.86 E-value=55 Score=14.38 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=13.1
Q ss_pred cCCCCCccCHHHHHHHHHH
Q psy12124 66 DKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 66 D~~~~g~i~~~e~~~~l~~ 84 (115)
+....|.++.++++..+..
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 4445677888888777754
No 255
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.75 E-value=1.3e+02 Score=20.29 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCC---CCCcccHHHHHH
Q psy12124 3 ADILRLMGQPFNKKILDELIEEVDAD---KSGRLEFDEFVT 40 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~d~~---~~g~i~~~ef~~ 40 (115)
+.+|+.+|+.++++++..+...+..- ....++-+|+..
T Consensus 323 ~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~ 363 (365)
T TIGR02660 323 INALAQLGIPLSEEEAAALLPAVRAFATRLKRPLSDAELIA 363 (365)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44566777777777777666665221 122555555543
No 256
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=28.75 E-value=1.9e+02 Score=19.58 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC
Q psy12124 10 GQPFNKKILDELIEEVDA--DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDD 87 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 87 (115)
.+.+..+|++.|+..+-. +..-.+-=++|.+.+..... +.....+..+-+.....=+|.+-..|+.+-++.-
T Consensus 35 d~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~----~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-- 108 (357)
T PLN02508 35 NKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQG----PLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT-- 108 (357)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCH----HHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC--
Confidence 556678899999998844 44445667778776555321 1122333334455566778999998888866432
Q ss_pred CCCHHHHHHHHHhhCCC
Q psy12124 88 QLTNEELDGMIDEIDSD 104 (115)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ 104 (115)
...+.++|..+..|
T Consensus 109 ---nP~lae~F~lMaRD 122 (357)
T PLN02508 109 ---NPVVAEIFTLMSRD 122 (357)
T ss_pred ---ChHHHHHHHHhCch
Confidence 23456666665554
No 257
>PRK10788 periplasmic folding chaperone; Provisional
Probab=28.75 E-value=2.3e+02 Score=20.64 Aligned_cols=95 Identities=13% Similarity=0.272 Sum_probs=59.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHHhchhchHHHHHHH------HHHHHhhcCCCCCccCH
Q psy12124 3 ADILRLMGQPFNKKILDELIEEVDA-DKSGRLEFDEFVTLAAKFIVEEDDEAMQKEL------REAFRLYDKDGNGYIPT 75 (115)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~------~~~f~~~D~~~~g~i~~ 75 (115)
.+..+.+|+.++++++...+..... ..+|.++...|..++...-. .+......+ ..+...+ -++.+++.
T Consensus 102 ~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~g~--t~~~f~~~ir~~l~~~~l~~~i--~~~~~~~~ 177 (623)
T PRK10788 102 DQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQMGM--TADQYAQALRQQLTTQQLINGV--AGTDFMLP 177 (623)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHH--hhcCCCCH
Confidence 4556778999999999999987532 25688999999888765432 112222222 1223333 24557777
Q ss_pred HHHHHHHHHh------------------CCCCCHHHHHHHHHhh
Q psy12124 76 SCLKEILREL------------------DDQLTNEELDGMIDEI 101 (115)
Q Consensus 76 ~e~~~~l~~~------------------~~~~~~~~~~~~~~~~ 101 (115)
.++....... ...++++++...+...
T Consensus 178 ~e~~~~~~~~~q~r~v~~~~i~~~~~~~~v~vsd~ei~~yy~~~ 221 (623)
T PRK10788 178 GETDELAALVAQQRVVREATIDVNALAAKQTVTDEEIKSYYDQN 221 (623)
T ss_pred HHHHHHHHHhhceEEEEEEEEcHHHccCcCCCCHHHHHHHHHhC
Confidence 7776654432 2346788888877763
No 258
>PRK00915 2-isopropylmalate synthase; Validated
Probab=28.36 E-value=2.2e+02 Score=20.41 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHh
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDA--DKSGRLEFDEFVTLAAKFI 46 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~ 46 (115)
++..|+.+|+.++++++..++..+.. +..+.++-.++..++....
T Consensus 337 v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~ 383 (513)
T PRK00915 337 FKHRLEELGYKLSDEELDKAFERFKELADKKKEVFDEDLEALVEDET 383 (513)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHh
Confidence 35677889999998888888877633 1234688888888875544
No 259
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.28 E-value=2.1e+02 Score=19.98 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhch
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVE 48 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 48 (115)
..+++.+++.... ..|.+++.+|..-+......
T Consensus 310 ~~~~~~~~~~~~~---~~~~f~l~d~~~q~~~~~km 342 (428)
T TIGR00959 310 VDEEEAKKLAEKM---KKGQFDLEDFLEQLRQIKKM 342 (428)
T ss_pred hCHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhc
Confidence 4455566666665 35789999999887766543
No 260
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=28.21 E-value=1.5e+02 Score=18.38 Aligned_cols=33 Identities=3% Similarity=0.093 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcCCCCCcc-CHHHHHHHHHHh
Q psy12124 53 AMQKELREAFRLYDKDGNGYI-PTSCLKEILREL 85 (115)
Q Consensus 53 ~~~~~~~~~f~~~D~~~~g~i-~~~e~~~~l~~~ 85 (115)
..+..++..|+.+=-+.+..| +..-+..++..+
T Consensus 81 ~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~F 114 (205)
T PF12238_consen 81 EGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDF 114 (205)
T ss_pred ccHHHHHHHHHHhccCcccccccHHHHHHHHHHH
Confidence 445677788876655666777 888888888775
No 261
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=28.05 E-value=1.6e+02 Score=18.62 Aligned_cols=67 Identities=12% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CC---CCCHHHHHHHHHhh
Q psy12124 28 DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-DD---QLTNEELDGMIDEI 101 (115)
Q Consensus 28 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~---~~~~~~~~~~~~~~ 101 (115)
....+|+..+....+...... +.+...|..+-.==.|.++..||-..+..+ +. .+-..-+..++..+
T Consensus 4 ~~~~Ridl~~lk~~l~~~LG~-------~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na 74 (252)
T PF12767_consen 4 QQNSRIDLEELKSQLQKRLGP-------DRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNA 74 (252)
T ss_pred CcccccCHHHHHHHHHHHHCh-------HHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 345678888888888777752 233333333332235899999998887663 22 22234455555555
No 262
>PLN02321 2-isopropylmalate synthase
Probab=28.04 E-value=1.7e+02 Score=21.65 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDAD--KSGRLEFDEFVTLAAKF 45 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~ 45 (115)
++..|+.+|+.++++++..++..+..- ..+.++-.++..++...
T Consensus 433 v~~~L~~lG~~l~~~~~~~~~~~vk~la~~~~~v~d~dl~~l~~~~ 478 (632)
T PLN02321 433 LKSRLKELGYELDDDELDDVFKRFKAVAEKKKGVTDEDLIALVSDE 478 (632)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356678889999988888888887331 23478888888777544
No 263
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=27.86 E-value=75 Score=14.65 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=16.6
Q ss_pred CCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcC
Q psy12124 30 SGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67 (115)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 67 (115)
.|.++..+|...+... ...+-.+.+.+|.
T Consensus 8 ~~~itv~~~rd~lg~s---------RK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLGLS---------RKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHTS----------HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHCcc---------HHHHHHHHHHHhc
Confidence 6677777777776433 3344445555554
No 264
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=27.70 E-value=85 Score=15.22 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=21.1
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12124 60 EAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMI 98 (115)
Q Consensus 60 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 98 (115)
.+|++| .+..|.|+..++...| | +++..+..+=
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~L---g--vs~~tIr~WK 43 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKL---G--VSESTIRKWK 43 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHH---C--CCHHHHHHHh
Confidence 456666 4578899988877655 3 5555555443
No 265
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=27.48 E-value=1e+02 Score=16.11 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHhCC---CCCC-cccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q psy12124 13 FNKKILDELIEEVDA---DKSG-RLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ 88 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~---~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 88 (115)
.+++.+.+-+..+-. +... .+++.+++..= +.... .....=..+-..+ +=|+.+..+|...|..+|
T Consensus 7 A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~G--L~g~~---~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~-- 76 (87)
T PF13331_consen 7 ASPEAIREALENARTEDEEPKESEITWEDLIELG--LIGGP---DSKERREKLGEYL---GIGYGNAKQLLKRLNMFG-- 76 (87)
T ss_pred CCHHHHHHHHHHhCccccCCccCcCCHHHHHHCC--CCCCc---cHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--
Confidence 455566655555422 1222 48888887651 11111 0111222233444 337888888888888776
Q ss_pred CCHHHHHHHH
Q psy12124 89 LTNEELDGMI 98 (115)
Q Consensus 89 ~~~~~~~~~~ 98 (115)
++.+++..++
T Consensus 77 it~~e~~~al 86 (87)
T PF13331_consen 77 ITREEFEEAL 86 (87)
T ss_pred CCHHHHHHHh
Confidence 7888877664
No 266
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.94 E-value=61 Score=13.35 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=11.5
Q ss_pred ccCHHHHHHHHHHhCCCC
Q psy12124 72 YIPTSCLKEILRELDDQL 89 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~ 89 (115)
.++..+++..+...|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456677777777766543
No 267
>PF14328 DUF4385: Domain of unknown function (DUF4385)
Probab=26.41 E-value=71 Score=18.49 Aligned_cols=60 Identities=7% Similarity=0.194 Sum_probs=39.6
Q ss_pred HhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhc--CCCCCccCHHHHHHHHH
Q psy12124 24 EVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD--KDGNGYIPTSCLKEILR 83 (115)
Q Consensus 24 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D--~~~~g~i~~~e~~~~l~ 83 (115)
.+.....|.+.++-|..-+.....-.+++........++.+|- ...+.+|..+--+.+|.
T Consensus 20 riGrGEQGVLlvePYKseilP~WrFktp~iA~~Ss~kIy~~Fl~Y~~~~DFvGmDMaRKflQ 81 (145)
T PF14328_consen 20 RIGRGEQGVLLVEPYKSEILPHWRFKTPEIARESSEKIYEMFLDYLEQDDFVGMDMARKFLQ 81 (145)
T ss_pred eecCCcceeEEEeccccccccccccCCHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 3456678889888888888777665555444444444444442 35667888887777763
No 268
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=26.24 E-value=1.4e+02 Score=17.40 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 58 LREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 58 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
+..-....|..+.+++|.++++.++-.
T Consensus 71 L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 71 LADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 333445677788888999999998855
No 269
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=26.18 E-value=97 Score=15.36 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
...++++.+.+|++..=--+.++++.-+..-. ....+..+...--..++..++..++...|..
T Consensus 2 K~~l~~Lv~~iDp~~~ld~~vee~Ll~laddF-------v~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 2 KRKLQELVKQIDPNEKLDPDVEELLLELADDF-------VDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHHCC-SS----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 34566777777654432222233322222111 1233334444443456677888888887754
No 270
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=26.06 E-value=72 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=21.9
Q ss_pred hCCCCCHHHHHHHHHHhCCCC-CCcccH
Q psy12124 9 MGQPFNKKILDELIEEVDADK-SGRLEF 35 (115)
Q Consensus 9 l~~~~~~~~~~~l~~~~d~~~-~g~i~~ 35 (115)
+|-..+.+++.+++..+++++ -|++++
T Consensus 306 vGPs~~pdel~~L~~~LnP~~epGRlTL 333 (474)
T PLN02291 306 VSDKMDPEELVKLIEILNPQNKPGRLTI 333 (474)
T ss_pred ECCCCCHHHHHHHHHHhCCCCCCceEEE
Confidence 466788999999999999975 477764
No 271
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=25.90 E-value=1.2e+02 Score=16.22 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=15.4
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHH
Q psy12124 72 YIPTSCLKEILRELDDQLTNEELDG 96 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~~~~~~~~ 96 (115)
.|+.+++.++.+.....+++++.+.
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~ 26 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEK 26 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHH
Confidence 4666677776666555666665443
No 272
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=25.62 E-value=74 Score=22.21 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=21.7
Q ss_pred hCCCCCHHHHHHHHHHhCCCC-CCcccH
Q psy12124 9 MGQPFNKKILDELIEEVDADK-SGRLEF 35 (115)
Q Consensus 9 l~~~~~~~~~~~l~~~~d~~~-~g~i~~ 35 (115)
+|-..+.+++.+++..++|++ .|++++
T Consensus 286 vGP~~~p~~l~~L~~~LnP~~epGRlTL 313 (443)
T TIGR01358 286 VGPSMTPDELLRLIERLNPENEPGRLTL 313 (443)
T ss_pred ECCCCCHHHHHHHHHHhCCCCCCceEEE
Confidence 466788999999999999975 477764
No 273
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.08 E-value=67 Score=13.14 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=4.9
Q ss_pred cCHHHHHHHHH
Q psy12124 73 IPTSCLKEILR 83 (115)
Q Consensus 73 i~~~e~~~~l~ 83 (115)
|+.++++.+|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555553
No 274
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=24.89 E-value=1.1e+02 Score=15.69 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=15.8
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy12124 72 YIPTSCLKEILRELDDQLTNEELDGMID 99 (115)
Q Consensus 72 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 99 (115)
.|+..+.+.+.+.+| +++.+++.+-.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 355666667776666 66666665543
No 275
>COG5562 Phage envelope protein [General function prediction only]
Probab=24.65 E-value=80 Score=18.15 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=11.5
Q ss_pred CCCCcccHHHHHHHHHH
Q psy12124 28 DKSGRLEFDEFVTLAAK 44 (115)
Q Consensus 28 ~~~g~i~~~ef~~~~~~ 44 (115)
+..|..+|+||+..+..
T Consensus 84 ~qsGqttF~ef~~~la~ 100 (137)
T COG5562 84 HQSGQTTFEEFCSALAE 100 (137)
T ss_pred HhcCCccHHHHHHHHHh
Confidence 35677777777776544
No 276
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=24.62 E-value=68 Score=22.60 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCccCHHHHH-HHHHHhCCCCCHHHHHHHHHhhCCCC
Q psy12124 68 DGNGYIPTSCLK-EILRELDDQLTNEELDGMIDEIDSDG 105 (115)
Q Consensus 68 ~~~g~i~~~e~~-~~l~~~~~~~~~~~~~~~~~~~d~~~ 105 (115)
+=+|.|+..++. ++..-+|..++..-+..++...+.|+
T Consensus 381 DiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNG 419 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNG 419 (580)
T ss_pred ecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCc
Confidence 568999999988 78788898888888999998887653
No 277
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.56 E-value=1.7e+02 Score=17.70 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCC---HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCC
Q psy12124 3 ADILRLMGQPFN---KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68 (115)
Q Consensus 3 ~~~l~~l~~~~~---~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 68 (115)
.++|..+|+++. .+++...|..+ ...-+-+-+....+... +.....++.-|..+-+.
T Consensus 111 Eq~L~elgv~~~PmPTe~Ic~~fneL---RsdivlL~eLk~a~~~~------E~El~~lr~r~eal~~g 170 (176)
T PF05499_consen 111 EQFLQELGVDLNPMPTEEICQEFNEL---RSDIVLLYELKQALQNC------EYELQSLRHRYEALAPG 170 (176)
T ss_pred HHHHHHcCCCCCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHHh------HHHHHHHHHHHHhhCCC
Confidence 345666665432 34444444443 22233344444444333 22234455555554433
No 278
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=24.53 E-value=64 Score=19.63 Aligned_cols=32 Identities=9% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELD 86 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 86 (115)
++.++.+|.-||...=-..+-+++.+.+..-+
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch
Confidence 57788999999988777778888888776544
No 279
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=24.46 E-value=1.5e+02 Score=16.96 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHHhchhc----hHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 29 KSGRLEFDEFVTLAAKFIVEED----DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~----~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
.+|.|+..+|+..+.+-..-.. +-+....+..+|+++ =|....+..|+......
T Consensus 41 rng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khl--LGR~p~~~~Ei~~~~~i 98 (131)
T PF00427_consen 41 RNGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHL--LGRAPYNQAEISAYSQI 98 (131)
T ss_dssp HTTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHH--CSS--SSHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHH--hCCCCCCHHHHHHHHHH
Confidence 4889999999998875432100 012234555666665 34444555565555443
No 280
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=24.44 E-value=1.2e+02 Score=15.80 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=15.0
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHH
Q psy12124 73 IPTSCLKEILRELDDQLTNEELDG 96 (115)
Q Consensus 73 i~~~e~~~~l~~~~~~~~~~~~~~ 96 (115)
|+.+++.++.......+++++...
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~ 26 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEK 26 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHH
Confidence 566667776666666666665433
No 281
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=24.42 E-value=1.7e+02 Score=17.60 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=29.5
Q ss_pred hcCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhhC
Q psy12124 65 YDKDGNGYIPTSCLKEILREL--DDQLTNEELDGMIDEID 102 (115)
Q Consensus 65 ~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d 102 (115)
+.++...++|.++|.+.++.. +..++.+.+..++...-
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 445556789999999998875 44789999998887653
No 282
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=24.35 E-value=55 Score=16.12 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=14.2
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy12124 71 GYIPTSCLKEILRELDDQLTNEELDGMID 99 (115)
Q Consensus 71 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 99 (115)
|.++..=+..+|+.+-.....++++.|++
T Consensus 48 grvskavlvkmlrkly~~tk~e~vkrmlh 76 (79)
T PF09061_consen 48 GRVSKAVLVKMLRKLYEATKNEEVKRMLH 76 (79)
T ss_dssp S-EEHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 45555556666655544444555555554
No 283
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=24.25 E-value=1.3e+02 Score=16.11 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=20.7
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCC-CHHHHHHHHHh
Q psy12124 66 DKDGNGYIPTSCLKEILRELDDQL-TNEELDGMIDE 100 (115)
Q Consensus 66 D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~ 100 (115)
-+++...+++.+-++.+...|..+ +-.++......
T Consensus 7 ~~~G~y~l~f~eA~~AC~~~gA~lAs~~QL~~AW~~ 42 (95)
T cd03521 7 LENGSQGLGLRAARQSCASLGARLASAAELRRAVVE 42 (95)
T ss_pred CCCCccccCHHHHHHHHHHcCCEeccHHHHHHHHHH
Confidence 355666777777777777665543 34444444443
No 284
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=1.9e+02 Score=18.07 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=41.8
Q ss_pred CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 29 KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
....+....|++.+...... .. -+-.+..|..+.+++...+..-+..++.+.+..+...-+
T Consensus 29 ~~~~~~~SK~lS~vLRH~p~------~~-------gl~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 29 EKERVKLSKFLSGVLRHFPE------AI-------GLRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred cchhhhHHHHHHHHHhcChH------Hc-------CeeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 34455566666665544321 11 123578999999999999999888899888888776544
No 285
>KOG4629|consensus
Probab=23.62 E-value=1.3e+02 Score=22.63 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCcceeccCC
Q psy12124 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGK 114 (115)
Q Consensus 56 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 114 (115)
...+.+|+..-+.+.-.+..+.+..+ +.+++++.++..++...++.|++..|
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~ 455 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSF 455 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHH
Confidence 35667888887777777777766654 45677777777776644545776654
No 286
>KOG1457|consensus
Probab=23.41 E-value=1.2e+02 Score=19.26 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHhCCCCCHHHHHHHHHHhC
Q psy12124 5 ILRLMGQPFNKKILDELIEEVD 26 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~d 26 (115)
++..||...+++++++++++|.
T Consensus 214 fianl~~~~~ed~l~~~~~~~~ 235 (284)
T KOG1457|consen 214 FIANLGPNCTEDELKQLLSRYP 235 (284)
T ss_pred hhhccCCCCCHHHHHHHHHhCC
Confidence 3466788899999999999983
No 287
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=23.09 E-value=1.1e+02 Score=14.78 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=17.9
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhC
Q psy12124 4 DILRLMGQPFNKKILDELIEEVD 26 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~~d 26 (115)
.+-+.+|..++.+++..++..+.
T Consensus 10 ~i~~llG~~i~~~ei~~~L~~lg 32 (71)
T smart00874 10 RINRLLGLDLSAEEIEEILKRLG 32 (71)
T ss_pred HHHHHHCCCCCHHHHHHHHHHCC
Confidence 44466788899989888888874
No 288
>KOG4403|consensus
Probab=23.09 E-value=2.8e+02 Score=19.66 Aligned_cols=56 Identities=30% Similarity=0.357 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 29 KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
++...+..||+.+....+......-..+.++.+-+.+|-+.+|.|+++|--.+++.
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 33445556666665444433333333567777777888888888888777777654
No 289
>PRK00441 argR arginine repressor; Provisional
Probab=22.87 E-value=1.7e+02 Score=17.02 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=31.0
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCC----CCCccee
Q psy12124 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDS----DGSGTVD 110 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~~~g~i~ 110 (115)
..+..+.+++...|...|..+++.-+.--+..... +.+|..-
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~~ 60 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKYK 60 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCEE
Confidence 46778899999999988998988887776666542 4556533
No 290
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.66 E-value=2.1e+02 Score=18.08 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=31.6
Q ss_pred HhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 63 RLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 63 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
...=-+++|.+....+..-+..+-..++..++..+-+..
T Consensus 158 ~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 158 DIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred EEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 334467899999999999999998899998887765543
No 291
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=22.31 E-value=1.3e+02 Score=18.55 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHh
Q psy12124 61 AFRLYDKDGNGYIPTSCLKEILREL 85 (115)
Q Consensus 61 ~f~~~D~~~~g~i~~~e~~~~l~~~ 85 (115)
+..-+|.+++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3446889999999999999887653
No 292
>PRK04280 arginine repressor; Provisional
Probab=22.11 E-value=1.1e+02 Score=17.79 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=24.1
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHHhC----CCCCCc
Q psy12124 1 MVADILRLMGQPFNKKILDELIEEVD----ADKSGR 32 (115)
Q Consensus 1 el~~~l~~l~~~~~~~~~~~l~~~~d----~~~~g~ 32 (115)
||...|+.-|+..|.+.+.+-++.+. ++++|.
T Consensus 23 eL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~ 58 (148)
T PRK04280 23 ELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGR 58 (148)
T ss_pred HHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCc
Confidence 57788888899999988888888763 345554
No 293
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=22.05 E-value=1.3e+02 Score=15.49 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHh
Q psy12124 13 FNKKILDELIEEV 25 (115)
Q Consensus 13 ~~~~~~~~l~~~~ 25 (115)
.+.+++..|...+
T Consensus 10 V~~~~i~kLA~sv 22 (79)
T PF14069_consen 10 VNKEDIFKLANSV 22 (79)
T ss_pred CCHHHHHHHHHhc
Confidence 3344444444444
No 294
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.77 E-value=1.9e+02 Score=17.15 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHhch
Q psy12124 34 EFDEFVTLAAKFIVE 48 (115)
Q Consensus 34 ~~~ef~~~~~~~~~~ 48 (115)
+.+||++.+......
T Consensus 2 ~k~efL~~L~~~L~~ 16 (181)
T PF08006_consen 2 NKNEFLNELEKYLKK 16 (181)
T ss_pred CHHHHHHHHHHHHHc
Confidence 345666666555544
No 295
>PLN02223 phosphoinositide phospholipase C
Probab=21.63 E-value=3.3e+02 Score=19.88 Aligned_cols=71 Identities=11% Similarity=-0.088 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHH---HHHhchhc--hHHHHHHHHHHHHhhc----CCCCCccCHHHHHHHHH
Q psy12124 13 FNKKILDELIEEVDADKSGRLEFDEFVTLA---AKFIVEED--DEAMQKELREAFRLYD----KDGNGYIPTSCLKEILR 83 (115)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~---~~~~~~~~--~~~~~~~~~~~f~~~D----~~~~g~i~~~e~~~~l~ 83 (115)
..+++++.+|..+. ++.|.++...+..++ ........ ......-+..++...- ..+.+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35789999999994 455667766666666 44443211 1111222222222110 11236699999999885
Q ss_pred H
Q psy12124 84 E 84 (115)
Q Consensus 84 ~ 84 (115)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 4
No 296
>cd08814 DED_Caspase_10_repeat2 Death Effector Domain, repeat 2, of Caspase-10. Death effector domain (DED) found in Caspase-10, repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-10 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-8 and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other m
Probab=21.56 E-value=1.2e+02 Score=15.63 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCCCHHHHHHH
Q psy12124 78 LKEILRELDDQLTNEELDGM 97 (115)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~ 97 (115)
++.+|-.++.+++.+++..+
T Consensus 4 yr~lL~~iSe~lt~edL~~l 23 (79)
T cd08814 4 YRNMLYELSENITSEDLKDI 23 (79)
T ss_pred HHHHHHHHHhhcCHHHHHHH
Confidence 45555555566665555443
No 297
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=21.49 E-value=1.5e+02 Score=25.00 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCC----HHHHHHHHHHhCCCCCC-cccHHHHHHHHHHHh
Q psy12124 2 VADILRLMGQPFN----KKILDELIEEVDADKSG-RLEFDEFVTLAAKFI 46 (115)
Q Consensus 2 l~~~l~~l~~~~~----~~~~~~l~~~~d~~~~g-~i~~~ef~~~~~~~~ 46 (115)
+..+++.+|.++. ...+..|.+...++..| .++++-|..+....-
T Consensus 607 ~~rF~~~IG~~l~~~~K~~kl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1740)
T PRK08332 607 LLRFYELIGKNLQNSEKREKLEELLSKHNGGSFGLTLNFNAFKEWASKYG 656 (1740)
T ss_pred HHHHHHHhchhhcchhHHHHHHHHHhhcCCCCcchhccHHHHHHHHhhcC
Confidence 5678888887554 56788888888888887 489999998876543
No 298
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=21.42 E-value=47 Score=12.92 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=4.3
Q ss_pred CCCcceec
Q psy12124 104 DGSGTVDF 111 (115)
Q Consensus 104 ~~~g~i~~ 111 (115)
+.||.++|
T Consensus 18 ~~dgtvsy 25 (27)
T PF04022_consen 18 NQDGTVSY 25 (27)
T ss_pred ccCceEec
Confidence 34565555
No 299
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=21.25 E-value=1.3e+02 Score=17.21 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=9.0
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q psy12124 5 ILRLMGQPFNKKILDELIEEV 25 (115)
Q Consensus 5 ~l~~l~~~~~~~~~~~l~~~~ 25 (115)
.++..|..+++.-++.++...
T Consensus 136 ~~~~~g~~i~~~a~~~L~~~~ 156 (172)
T PF06144_consen 136 RAKKNGLKIDPDAAQYLIERV 156 (172)
T ss_dssp HHHHTT-EE-HHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHh
Confidence 334445555555555554444
No 300
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=21.14 E-value=80 Score=22.05 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=18.6
Q ss_pred hCCCCCHHHHHHHHHHhCCCC-CCcccH
Q psy12124 9 MGQPFNKKILDELIEEVDADK-SGRLEF 35 (115)
Q Consensus 9 l~~~~~~~~~~~l~~~~d~~~-~g~i~~ 35 (115)
+|-..+.+++.+++..+++++ .|++++
T Consensus 289 vGP~~~~~~l~~l~~~LnP~~~pGRltl 316 (439)
T PF01474_consen 289 VGPSMTPEELVELCDRLNPDNEPGRLTL 316 (439)
T ss_dssp E-TT--HHHHHHHHHHHSTT--TTSEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCCCCCeEEE
Confidence 466778999999999999975 477653
No 301
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=21.09 E-value=1.6e+02 Score=15.98 Aligned_cols=33 Identities=6% Similarity=-0.019 Sum_probs=25.1
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12124 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101 (115)
Q Consensus 69 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 101 (115)
..-.+|.+++..++...|..+....+..+...+
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 344789999999999998888777666655554
No 302
>KOG2623|consensus
Probab=21.02 E-value=3.1e+02 Score=19.29 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
-++++++.+.+-++...++--..+..-+.........-.......++.-.-.+.+.+.++..|+.+.++.
T Consensus 318 l~eI~~I~~~H~k~P~~r~aQ~~LA~eVTr~VHG~egL~~A~r~T~al~g~~~~~~~~ls~~ei~~lfk~ 387 (467)
T KOG2623|consen 318 LEEIKQILEEHRKEPSQRIAQKLLAAEVTRMVHGKEGLEVAERCTKALFGAKKAGLSGLSLSEILQLFKD 387 (467)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHcccchHHHHHHHHHHhhcccccccccCCHHHHHHHHhc
Confidence 4466666666655554444433444333333333221111222222222222356777888888887764
No 303
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=1.9e+02 Score=16.90 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy12124 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84 (115)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 84 (115)
.+.++.+++..++.....-+.-.+++..|...+...+.. +...+.+..++++. ..+|.++..|-..+.+.
T Consensus 60 ~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~---e~R~eli~~mweIa--~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 60 NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE---EQRLELIGLMWEIA--YADGELDESEDHVIWRV 129 (148)
T ss_pred HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHH--HccccccHHHHHHHHHH
Confidence 355667778888777655555667778888777655543 23345566667765 46777777776665544
No 304
>PTZ00315 2'-phosphotransferase; Provisional
Probab=20.89 E-value=2.5e+02 Score=20.68 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=30.2
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12124 65 YDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID 102 (115)
Q Consensus 65 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 102 (115)
+..+.+|.+..+++......-+..++.+.+..++..=|
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSD 435 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCC
Confidence 34578999999999988876666788888888887644
No 305
>KOG0871|consensus
Probab=20.86 E-value=2e+02 Score=16.96 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHHhchhchHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC
Q psy12124 11 QPFNKKILDELIEEVDA-DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQL 89 (115)
Q Consensus 11 ~~~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 89 (115)
+.++.+.+..|++.+-| +-.-.=+-.+.+..++...-. --...+-++.++...-+|..+.+..+|..+|+.-
T Consensus 11 ~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~-------liSsEAneic~~e~KKTIa~EHV~KALe~LgF~e 83 (156)
T KOG0871|consen 11 LSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFIN-------LISSEANEICNKEAKKTIAPEHVIKALENLGFGE 83 (156)
T ss_pred ccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHH
Confidence 34556778888887744 322111222332222211110 0112234556677788999999999999988764
Q ss_pred CHHHHHHHHHh
Q psy12124 90 TNEELDGMIDE 100 (115)
Q Consensus 90 ~~~~~~~~~~~ 100 (115)
--+++..++..
T Consensus 84 Yiee~~~vl~~ 94 (156)
T KOG0871|consen 84 YIEEAEEVLEN 94 (156)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 306
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=20.86 E-value=1.5e+02 Score=15.72 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=10.5
Q ss_pred cCHHHHHHHHHHhCCC
Q psy12124 73 IPTSCLKEILRELDDQ 88 (115)
Q Consensus 73 i~~~e~~~~l~~~~~~ 88 (115)
-+...+..+|...+.+
T Consensus 66 Atv~~Lv~AL~~c~l~ 81 (90)
T cd08780 66 ATLQRLVQALEENGLT 81 (90)
T ss_pred chHHHHHHHHHHccch
Confidence 6666677777766543
No 307
>cd08341 DED_Caspase_10_repeat1 Death effector domain, repeat 1, of Caspase-10. Death effector domain (DED) found in caspase-10, repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-10 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-8 and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other m
Probab=20.82 E-value=1.1e+02 Score=15.80 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHH
Q psy12124 78 LKEILRELDDQLTNEELDGMI 98 (115)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~ 98 (115)
|+.++-.++..++.+++..+-
T Consensus 3 fr~lL~~Ise~L~~~el~~lK 23 (82)
T cd08341 3 FNQKLLIIDEGLGVEDIEALK 23 (82)
T ss_pred HHHHHHHHHhhcCHHHHHHHH
Confidence 455555666666666655543
No 308
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=20.66 E-value=1.2e+02 Score=14.54 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=10.7
Q ss_pred HhhcCCCCCccCHHHHHH
Q psy12124 63 RLYDKDGNGYIPTSCLKE 80 (115)
Q Consensus 63 ~~~D~~~~g~i~~~e~~~ 80 (115)
..++.+++|.|+..-+..
T Consensus 22 ~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHCTTTTTBEEHHHHTT
T ss_pred HHHHhcCCCcEeHHHHHc
Confidence 445566677777665443
No 309
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=2.1e+02 Score=17.19 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=5.8
Q ss_pred CCcccHHHHHHHH
Q psy12124 30 SGRLEFDEFVTLA 42 (115)
Q Consensus 30 ~g~i~~~ef~~~~ 42 (115)
+.+|++++....+
T Consensus 26 STYVTL~dla~mV 38 (193)
T COG5394 26 STYVTLEDLAQMV 38 (193)
T ss_pred ceeeeHHHHHHHH
Confidence 3344444444443
No 310
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.48 E-value=1.4e+02 Score=15.06 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy12124 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLA 42 (115)
Q Consensus 2 l~~~l~~l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 42 (115)
|+.+++.|+---+.+++++-|... =+.|+..|...+-
T Consensus 2 LK~ii~~Lh~G~~~e~vk~~F~~~----~~~Vs~~EI~~~E 38 (71)
T PF04282_consen 2 LKEIIKRLHEGEDPEEVKEEFKKL----FSDVSASEISAAE 38 (71)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH----HCCCCHHHHHHHH
Confidence 455666665555555555555443 2234444444443
No 311
>PF08585 DUF1767: Domain of unknown function (DUF1767); InterPro: IPR013894 This domain is present in eukaryotic proteins of unknown function, and is sometimes found to the N terminus of ubiquitin-binding and nucleic acid-binding domains. ; PDB: 3NBI_A.
Probab=20.40 E-value=1.4e+02 Score=15.26 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=12.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHh
Q psy12124 4 DILRLMGQPFNKKILDELIEEV 25 (115)
Q Consensus 4 ~~l~~l~~~~~~~~~~~l~~~~ 25 (115)
.+|+..|..++++-++.++..+
T Consensus 2 ~~L~~~g~~l~~~wl~~c~~~~ 23 (90)
T PF08585_consen 2 EWLNKRGWHLSPEWLEECVEYL 23 (90)
T ss_dssp HHHHHH-----HHHHHHHHHHH
T ss_pred hHHHhcCCCcCHHHHHHHHHHH
Confidence 4677888888888888777765
No 312
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=20.38 E-value=1.4e+02 Score=15.18 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=17.8
Q ss_pred CCCCCCcccHHHHHHHHHHHhc
Q psy12124 26 DADKSGRLEFDEFVTLAAKFIV 47 (115)
Q Consensus 26 d~~~~g~i~~~ef~~~~~~~~~ 47 (115)
..+..|.|+++.|++.+.....
T Consensus 12 ~~n~~G~iTl~gfLa~W~l~T~ 33 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWSLTTL 33 (76)
T ss_pred EEcCCCcCcHHHHHHHHHHHHH
Confidence 3567899999999999886654
No 313
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=20.37 E-value=1.8e+02 Score=16.22 Aligned_cols=31 Identities=13% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12124 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDE 100 (115)
Q Consensus 70 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 100 (115)
.|.++.+++..-+..-+..++...+..++..
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~ 56 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNA 56 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4455555555444433444555555444443
No 314
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.29 E-value=1.4e+02 Score=18.14 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC
Q psy12124 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDD 87 (115)
Q Consensus 55 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 87 (115)
++..+.+|.-||...=-..+-+++.+.+..-+.
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~I 84 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGI 84 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccc
Confidence 567889999999888777888888887765443
No 315
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=20.19 E-value=1.5e+02 Score=15.44 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=10.7
Q ss_pred CcccHHHHHHHHHHHhc
Q psy12124 31 GRLEFDEFVTLAAKFIV 47 (115)
Q Consensus 31 g~i~~~ef~~~~~~~~~ 47 (115)
+..++.+|+..+.....
T Consensus 24 ~~~tv~~~~~~lrk~L~ 40 (87)
T cd01612 24 ATQSFQAVIDFLRKRLK 40 (87)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 34567777777766554
No 316
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=20.06 E-value=1.3e+02 Score=15.73 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHhhCCCCCcceecc
Q psy12124 89 LTNEELDGMIDEIDSDGSGTVDFD 112 (115)
Q Consensus 89 ~~~~~~~~~~~~~d~~~~g~i~~~ 112 (115)
.+++++..+|+.+..+.+..+...
T Consensus 56 SS~~EL~EA~rl~~~n~~~~l~ih 79 (83)
T cd06404 56 SSQMELEEAFRLYELNKDSELNIH 79 (83)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEE
Confidence 356778888888877776666544
No 317
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=20.06 E-value=2.5e+02 Score=17.82 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHh
Q psy12124 14 NKKILDELIEEVD---ADKSGRLEFDEFVTLAAKFI 46 (115)
Q Consensus 14 ~~~~~~~l~~~~d---~~~~g~i~~~ef~~~~~~~~ 46 (115)
+++.+.+|+...+ ..+.+..+|+.|+.++....
T Consensus 2 t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp 37 (230)
T cd00325 2 TESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP 37 (230)
T ss_pred CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhcc
Confidence 5667777777652 23467899999999887654
No 318
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.03 E-value=2.3e+02 Score=17.42 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=10.8
Q ss_pred HhhcCCCCCccCHHHHHHHHH
Q psy12124 63 RLYDKDGNGYIPTSCLKEILR 83 (115)
Q Consensus 63 ~~~D~~~~g~i~~~e~~~~l~ 83 (115)
..|..|+.|.|+...+..+.+
T Consensus 126 ~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 126 RAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred HHHhcCCCCCcCHHHHHHHHh
Confidence 344455555555555544443
Done!