RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12124
(115 letters)
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 128 bits (324), Expect = 2e-39
Identities = 33/112 (29%), Positives = 70/112 (62%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ ++R++GQ + L E+I+EVD D SG ++FDEF+ + + + ++ ++EL +
Sbjct: 40 ELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSD 99
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
FR++DK+ +GYI LK +L+ + +T ++++ ++ + D + G +D+D
Sbjct: 100 LFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 151
Score = 67.2 bits (165), Expect = 1e-15
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 44 KFIVEEDDEAMQKELREAFRLYDKDGN-GYIPTSCLKEILRELDDQLTNEELDGMIDEID 102
K VE+ E + E + AF ++ G I T L +++R L T EEL MIDE+D
Sbjct: 6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVD 65
Query: 103 SDGSGTVDFD 112
DGSGTVDFD
Sbjct: 66 EDGSGTVDFD 75
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+L+ G+ + ++EL+++ D + GR+++DEF+
Sbjct: 120 MLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 127 bits (322), Expect = 3e-39
Identities = 38/112 (33%), Positives = 70/112 (62%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ ++R++GQ K+ LD +IEEVD D SG ++F+EF+ + + + E+ ++EL
Sbjct: 41 ELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAN 100
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
FR++DK+ +G+I L EILR + +T E+++ ++ + D + G +DFD
Sbjct: 101 CFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFD 152
Score = 67.6 bits (166), Expect = 1e-15
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
E M E + AF ++D DG G I T L ++R L T EELD +I+E+D DGSGT+D
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTID 74
Query: 111 FD 112
F+
Sbjct: 75 FE 76
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
ILR G+ ++ +++L+++ D + GR++FDEF+ +
Sbjct: 121 ILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKM 157
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 123 bits (310), Expect = 2e-37
Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEE-DDEAMQKELR 59
+ IL ++G K + +LI+E D +G ++FD F + A+F+ EE + E MQ+ELR
Sbjct: 35 QIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELR 94
Query: 60 EAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
EAFRLYDK+GNGYI T ++EIL ELD+ L++E+LD MIDEID+DGSGTVDF+
Sbjct: 95 EAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFE 147
Score = 63.0 bits (154), Expect = 5e-14
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 47 VEEDDEAMQKELREAFRLYDK-DGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105
V + K L AFR ++ +G+G + T + IL L Q T + +IDE D G
Sbjct: 4 VSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFG 63
Query: 106 SGTVDFD 112
+G +DFD
Sbjct: 64 NGDIDFD 70
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
IL + + + + LD +I+E+DAD SG ++F+EF+ +
Sbjct: 116 ILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 122 bits (308), Expect = 5e-37
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ ++ +G K+ + +LI+E D++ +++D+F + + I++ D E++
Sbjct: 44 ELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPL---DEIKR 100
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
AF+L+D D G I L+ + +EL + LT+EEL MI+E D DG G ++ +
Sbjct: 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINEN 152
Score = 68.3 bits (168), Expect = 5e-16
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 40 TLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMID 99
+L + + E E ++E+ EAF L+D + +G++ LK ++ L +L E+ +ID
Sbjct: 7 SLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLID 66
Query: 100 EIDSDGSGTVDFD 112
E DS+G + +D
Sbjct: 67 EYDSEGRHLMKYD 79
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + +G+ + L +IEE D D G + +EF+ +
Sbjct: 121 VAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 128 bits (324), Expect = 6e-37
Identities = 47/112 (41%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ ++R +GQ + L ++I EVDAD +G ++F EF+T+ A+ + + D E +E+RE
Sbjct: 333 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE---EEIRE 389
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
AFR++DKDGNGYI + L+ ++ L ++LT+EE+D MI E D DG G V+++
Sbjct: 390 AFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 441
Score = 79.6 bits (196), Expect = 6e-19
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKF----IVEEDDEAMQKELREAFRLYDKDGN 70
K D L+ ++ ++F E + ++ E E +EAF L+DKDG+
Sbjct: 270 KFEGDTLVNRIELK---GIDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGD 326
Query: 71 GYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
G I T L ++R L T EL MI+E+D+DG+GT+DF
Sbjct: 327 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 368
Score = 39.5 bits (92), Expect = 8e-05
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
AM + + ++ KD Y + +K L +++ + ID G +
Sbjct: 243 SAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRI-------ELKGIDFKEDGNILG 295
Query: 112 D 112
Sbjct: 296 H 296
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
++ +G+ + +DE+I E D D G++ ++EFV +
Sbjct: 410 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 446
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 121 bits (305), Expect = 8e-37
Identities = 38/114 (33%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAM-QKELR 59
+ + +R MG + L EL ++++ + G ++FD+FV L ++ E + + KELR
Sbjct: 32 DLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELR 91
Query: 60 EAFRLYDKDGNGYIPTSCLKEILRE-LDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+AFR +D +G+G I TS L+E +R L Q+ + +++ +I ++D +G G VDF+
Sbjct: 92 DAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFE 145
Score = 69.1 bits (170), Expect = 2e-16
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 46 IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105
+ +ELREAFR +DKD +GYI L +R + T EL + +I+ +
Sbjct: 1 MDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNL 60
Query: 106 SGTVDFD 112
G VDFD
Sbjct: 61 GGHVDFD 67
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
L+G + ++E+I +VD + GR++F+EFV + ++
Sbjct: 117 LLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR 153
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 121 bits (305), Expect = 1e-36
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+R +G K+ + ++I E+D D SG ++F+EF+T+ + E D +E+ +AFR
Sbjct: 52 VAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSR---EEILKAFR 108
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
L+D D +G I L+ + +EL + LT EEL MI E D + +D D
Sbjct: 109 LFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 157
Score = 67.2 bits (165), Expect = 2e-15
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
E ++E+REAF L+D DG+G I LK +R L + EE+ MI EID DGSGT+D
Sbjct: 23 TEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTID 82
Query: 111 FD 112
F+
Sbjct: 83 FE 84
Score = 34.9 bits (81), Expect = 0.002
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ + +G+ ++ L E+I E D + ++ DEF+ + K
Sbjct: 126 VAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK 165
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 119 bits (302), Expect = 2e-36
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ +R +G K+ + ++I E+D + +G++ F +F+T+ + + E+D + +E+ +
Sbjct: 27 ELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTK---EEILK 83
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
AF+L+D D G I LK + +EL + LT+EEL MIDE D DG G V
Sbjct: 84 AFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQ 135
Score = 66.7 bits (164), Expect = 2e-15
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
E ++E+REAF L+D DG G I LK +R L + EE+ MI EID +G+G ++F
Sbjct: 2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 61
Query: 112 D 112
Sbjct: 62 G 62
Score = 35.1 bits (82), Expect = 0.001
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ + +G+ + L E+I+E D D G + EF+ + K
Sbjct: 104 VAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKK 143
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 119 bits (302), Expect = 6e-36
Identities = 47/109 (43%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
++R +GQ + L ++I EVDAD +G ++F EF+T+ A+ + + D E +E+REAFR
Sbjct: 35 TVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE---EEIREAFR 91
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
++DKDGNGYI + L+ ++ L ++LT+EE+D MI E D DG G V+++
Sbjct: 92 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 140
Score = 71.0 bits (175), Expect = 6e-17
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRL 64
++ +G+ + +DE+I E D D G++ ++EFV + A ++ +R R
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRA 168
Query: 65 YDKDGNGYI 73
K +
Sbjct: 169 IGKMARVFS 177
Score = 71.0 bits (175), Expect = 7e-17
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 46 IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105
+ ++ E E +EAF L+DKDG+G I T L ++R L T EL MI+E+D+DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 106 SGTVDFD 112
+GT+DF
Sbjct: 61 NGTIDFP 67
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 118 bits (298), Expect = 1e-35
Identities = 43/109 (39%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
++R +GQ + L ++I EVDAD +G ++F EF++L A+ + E+D E +EL EAF+
Sbjct: 34 TVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSE---EELIEAFK 90
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
++D+DGNG I + L+ ++ L ++LT++E+D MI E D DG G ++++
Sbjct: 91 VFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYE 139
Score = 67.9 bits (167), Expect = 5e-16
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 48 EEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSG 107
E+ E E +EAF L+DKDG+G I T L ++R L T EL MI+E+D+DG+G
Sbjct: 2 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG 61
Query: 108 TVDFD 112
T+DF
Sbjct: 62 TIDFP 66
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
++ +G+ +DE+I E D D G + ++EFV +
Sbjct: 108 VMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 115 bits (290), Expect = 1e-34
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+L+ G +E+ E DA +G+++F EF+++ + + + E LR+AFR
Sbjct: 30 TVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSE---DILRQAFR 86
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+D +G GYIP + L++ L L D+L E + +++ G + +D
Sbjct: 87 TFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYD 134
Score = 66.4 bits (163), Expect = 2e-15
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
+ E +EAF L+D + G+I L+ +L++ ++ + M +E D+ G+G + F
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQF 61
Query: 112 D 112
Sbjct: 62 P 62
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 113 bits (285), Expect = 8e-34
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 1 MVADILRLMGQPFNKKILDELI-EEVDADKSGRLEFDEFVTLAAKFIVEED--DEAMQKE 57
+ D LR +G +++ ++I + + L D+ L E D +A ++
Sbjct: 25 SLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTED 84
Query: 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+AF+++DK+ G + L+ +L L ++LT+ E+D ++ ++ D +G +D+
Sbjct: 85 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYK 139
Score = 60.7 bits (148), Expect = 4e-13
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMID-EIDSDGSGTVDFD 112
+ ++ F L+DK G G I L + LR + TN+ + +I+ + + ++ D
Sbjct: 4 RANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Score = 34.5 bits (80), Expect = 0.002
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+L +G+ +DEL++ V+ D +G +++ +F+
Sbjct: 108 MLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 113 bits (285), Expect = 9e-34
Identities = 37/112 (33%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+A ++R +G ++ + +L+ E+D D + +EF EF+ L ++ + D E +EL E
Sbjct: 32 ELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSE---QELLE 88
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
AF+++DK+G+G I + LK +L + ++LT+ E+D M+ E+ DGSG ++
Sbjct: 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIK 139
Score = 69.8 bits (172), Expect = 1e-16
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 46 IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105
+ + E E +EAF L+DKD +G I S L ++R L + E+ +++EID DG
Sbjct: 1 MSQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDG 60
Query: 106 SGTVDFD 112
+ ++F
Sbjct: 61 NHAIEFS 67
Score = 29.7 bits (68), Expect = 0.13
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+L +G+ +DE++ EV D SG + +F L +K
Sbjct: 109 VLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALLSK 147
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 108 bits (272), Expect = 8e-32
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREA 61
+ LR +G+ L+ + +++A + F T+ K I ++ KE+ +A
Sbjct: 27 LGSALRSLGKNPTNAELNTIKGQLNAK---EFDLATFKTVYRKPIKTPTEQ--SKEMLDA 81
Query: 62 FRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
FR DK+GNG I + L+++L L D LT+ E++ ++ E+ G G ++++
Sbjct: 82 FRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYE 132
Score = 59.5 bits (145), Expect = 8e-13
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 53 AMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
A +++E F+++DKD +G + L LR L TN EL+ + ++++ F
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATF 60
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+L +G ++EL++EV G + ++ FV +
Sbjct: 101 LLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDM 137
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 106 bits (268), Expect = 4e-31
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ D+ R +G + + + L F+EF+ + E + E
Sbjct: 32 KLGDVCRCLGINPRNEDVFA-VGGTHKMGEKSLPFEEFLPAYEGLMDCEQGT--FADYME 88
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID--SDGSGTVDFD 112
AF+ +D++G G+I + L+ +L L ++L++E++D +I D D G V ++
Sbjct: 89 AFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYE 142
Score = 57.2 bits (139), Expect = 8e-12
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 51 DEAMQKELREAFRLYD--KDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGT 108
+ +L++ F L+D +G + L ++ R L NE++ + G +
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGEKS 62
Query: 109 VDFD 112
+ F+
Sbjct: 63 LPFE 66
Score = 27.9 bits (63), Expect = 0.52
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 5 ILRLMGQPFNKKILDELIEEVDA--DKSGRLEFDEFV 39
+L +G+ + + +DE+I+ D D G +++++FV
Sbjct: 109 VLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 145
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 104 bits (262), Expect = 8e-30
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
D L+ +G + + +L++ D DKSG +++ EF+ E +E L AF
Sbjct: 34 DGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREE----NLVSAFS 89
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+DKDG+GYI +++ ++ L + +D MI EID D G +D+
Sbjct: 90 YFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYG 136
Score = 64.6 bits (158), Expect = 2e-14
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
E L+E F++ D D +G I LK+ L+ + +L E+ ++D D D SGT+D+
Sbjct: 6 EEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 65
Query: 112 D 112
Sbjct: 66 G 66
Score = 52.2 bits (126), Expect = 9e-10
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDE----AMQKELREAFRLYDKDGNGYI 73
+D++I+E+D D G++++ EF + K LR+A L D N I
Sbjct: 118 IDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVI 177
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 102 bits (257), Expect = 1e-29
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
D+L MG+ + L+ ++ E G + F F+T+ + + D E +R AF
Sbjct: 31 DMLASMGKNPTDEYLEGMMSEAP----GPINFTMFLTMFGEKLNGTDPE---DVIRNAFA 83
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+D++ +G+I L+E+L + D+ T+EE+D M E D G ++
Sbjct: 84 CFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYV 132
Score = 55.6 bits (135), Expect = 3e-11
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
D++ +E +EAF + D++ +G+I L ++L + T+E L+GM+ E G ++
Sbjct: 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPIN 57
Query: 111 FD 112
F
Sbjct: 58 FT 59
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+L MG F + +DE+ E DK G + EF +
Sbjct: 101 LLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 101 bits (254), Expect = 4e-29
Identities = 25/113 (22%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADK--SGRLEFDEFVTLAAKFIVEEDDEAMQKELR 59
V DI R +GQ +++++ ++ + + F+EF+ + +D + ++
Sbjct: 30 VGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKD-QGTFEDFV 88
Query: 60 EAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E R++DK+GNG + + L+ +L L +++T EE++ ++ + D +G ++++
Sbjct: 89 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYE 140
Score = 61.8 bits (151), Expect = 1e-13
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSD--GSGT 108
+A + +EAF L+D+ G+ I S + +I R L TN E++ ++ + +
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 62
Query: 109 VDFD 112
+ F+
Sbjct: 63 ITFE 66
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/35 (22%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFV 39
+L +G+ ++ ++EL++ + D +G + ++ FV
Sbjct: 110 VLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFV 143
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 101 bits (253), Expect = 5e-29
Identities = 25/114 (21%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADK--SGRLEFDEFVTLAAKFIVEEDDEAMQKEL 58
D++R +GQ + +++ +D+ S R++F+ F+ + + + ++
Sbjct: 31 QCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVA-KNRGQGTYEDY 89
Query: 59 REAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E FR++DK+GNG + + L+ +L L +++T EE++ ++ D +G ++++
Sbjct: 90 LEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYE 142
Score = 59.1 bits (144), Expect = 2e-12
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSD--GSGT 108
++ +E +EAF L+D+ G+G I S +++R L TN E+ ++ SD S
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRR 64
Query: 109 VDFD 112
VDF+
Sbjct: 65 VDFE 68
Score = 27.9 bits (63), Expect = 0.54
Identities = 5/37 (13%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+L +G+ ++ ++ ++ D +G + ++ F+
Sbjct: 112 VLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKH 147
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 101 bits (253), Expect = 1e-28
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+ MG+ K +E ++ + + SG + F F+T+ + + D E + AF+
Sbjct: 49 ETFAAMGRLNVK---NEELDAMIKEASGPINFTVFLTMFGEKLKGADPE---DVIMGAFK 102
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ D DG G I S L+E+L + T EE+ M D +G VD+
Sbjct: 103 VLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYK 151
Score = 54.5 bits (132), Expect = 1e-10
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 42 AAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101
+ + DE ++ +EAF + D++ +G I L+E + E +D +
Sbjct: 11 GSSNVFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNE---ELDAM 67
Query: 102 DSDGSGTVDFD 112
+ SG ++F
Sbjct: 68 IKEASGPINFT 78
Score = 33.7 bits (78), Expect = 0.004
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDD 51
+L G F + + + D +G +++ + E +
Sbjct: 120 LLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITHGEDAEGE 166
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 100 bits (252), Expect = 1e-28
Identities = 21/113 (18%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREA 61
V D+LR +G + + + + +E + + + + +D E EA
Sbjct: 33 VGDLLRCLGMNPTEAQVHQHGG-TKKMGEKAYKLEEILPIYEE-MSSKDTGTAADEFMEA 90
Query: 62 FRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEID--SDGSGTVDFD 112
F+ +D++G G I ++ ++ +L+ L +++T ++ + + D D G + ++
Sbjct: 91 FKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYE 143
Score = 54.1 bits (131), Expect = 1e-10
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 51 DEAMQKELREAFRLYD--KDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGT 108
+ +E+RE F L+D +G + + + ++LR L T ++ G
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKA 62
Query: 109 VDFD 112
+
Sbjct: 63 YKLE 66
Score = 26.8 bits (60), Expect = 1.4
Identities = 5/37 (13%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 5 ILRLMGQPFNKKILDELIEEVD--ADKSGRLEFDEFV 39
+L+++G+ + +++ D D G +++++ +
Sbjct: 110 VLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLM 146
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 101 bits (254), Expect = 1e-28
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L G PF+ ++L+ D + SG + FDEF L +RE FR
Sbjct: 51 AALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDL----------HHFILSMREGFR 100
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
D G+G + ++ ++ L Q++ + ++ + D G++ FD
Sbjct: 101 KRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFD 149
Score = 64.6 bits (158), Expect = 2e-14
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 49 EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGT 108
+EL E FR D DG+G I L L + + ++ D + SG
Sbjct: 20 ARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGE 79
Query: 109 VDFD 112
+ FD
Sbjct: 80 ITFD 83
Score = 58.1 bits (141), Expect = 7e-12
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L G +++ L+ + D + G L FD++V L+ +R F
Sbjct: 117 AALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIF----------VCRVRNVFA 166
Query: 64 LYDKDGNGYI 73
YD++ G +
Sbjct: 167 FYDRERTGQV 176
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 100 bits (251), Expect = 2e-28
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
I +G+ + K L +++E G L F F+++ + + D E + +R AF
Sbjct: 42 AISEQLGRAPDDKELTAMLKEAP----GPLNFTMFLSIFSDKLSGTDSE---ETIRNAFA 94
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
++D+ + +K++L + D +E+ E +G G D+
Sbjct: 95 MFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYV 142
Score = 56.8 bits (138), Expect = 1e-11
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 42 AAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101
AA ++ + + +E++EAF + D D +G++ +K I +L ++EL M+ E
Sbjct: 4 AASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE- 62
Query: 102 DSDGSGTVDFD 112
G ++F
Sbjct: 63 ---APGPLNFT 70
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 98.8 bits (247), Expect = 3e-28
Identities = 18/110 (16%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 3 ADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAF 62
+ N+++L + + +DAD +G ++ +EF ++ + + L+ +
Sbjct: 23 KAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSD-DKIGLKVLY 81
Query: 63 RLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+L D DG+G + + ++ E++ + + D++G G + +
Sbjct: 82 KLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLE 127
Score = 61.8 bits (151), Expect = 1e-13
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
F+ D +G+G + +K + + + L + ID+DG+G +D +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 31.3 bits (72), Expect = 0.024
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + + + E + + DA+ G + +EF+
Sbjct: 97 VTSFFKKHGIEKVAEQVMKADANGDGYITLEEFLEF 132
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 100 bits (250), Expect = 5e-28
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+G+ ++ LD ++ E G + F F+T+ I D+E + AF
Sbjct: 81 ATFDSLGRLCTEQELDSMVAEAP----GPINFTMFLTIFGDRIAGTDEE---DVIVNAFN 133
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
L+D +G+G LK L ++ + +E+D + E DG+G +D
Sbjct: 134 LFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIK 181
Score = 56.2 bits (136), Expect = 4e-11
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
+ +E +EAF+L D+D +G+I + ++ L T +ELD M+ E G ++
Sbjct: 52 TQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPIN 107
Query: 111 FD 112
F
Sbjct: 108 FT 109
Score = 36.9 bits (86), Expect = 5e-04
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED 50
L G+ F++ +D+ + E D +G ++ +F + K EE
Sbjct: 150 SLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKGAKEEG 195
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 99.6 bits (249), Expect = 9e-28
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
L+ +G + +++ ++D++ SG++ + +F+ E F+ +
Sbjct: 83 LKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKE----VCLIPFKFF 138
Query: 66 DKDGNGYIPTSCLKEIL--RELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
D DGNG I LK I ++++ L ++ +D ++ E+D +G G +DF
Sbjct: 139 DIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFH 187
Score = 70.3 bits (173), Expect = 2e-16
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 41 LAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDE 100
+A I + + LR F D D +G + + + + L+++ Q ++ ++ +
Sbjct: 42 IALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRD 101
Query: 101 IDSDGSGTVDFD 112
IDS+ SG + +
Sbjct: 102 IDSNASGQIHYT 113
Score = 36.8 bits (86), Expect = 5e-04
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ P K +D L++EVD + G ++F EF+ +
Sbjct: 158 DDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
Score = 28.7 bits (65), Expect = 0.34
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 79 KEILRELDDQLTNEELDG---MIDEIDSDGSGTVDFD 112
K L + L + E++ + +D D SGT+
Sbjct: 41 KIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQ 77
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 96.8 bits (242), Expect = 3e-27
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
D+ +G+ L+ +++E G+L F F+TL + + D E LR AF
Sbjct: 40 DMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTLFGEKVSGTDPE---DALRNAFS 92
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
++D+DG G+IP LK++L + D + EE+ + + + +++
Sbjct: 93 MFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYN 140
Score = 55.2 bits (134), Expect = 4e-11
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
+ +EL+EAF + D+D +G+I LK++ L ++EL+ M+ E G ++
Sbjct: 11 SQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLN 66
Query: 111 FD 112
F
Sbjct: 67 FT 68
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 97.1 bits (242), Expect = 8e-27
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSG-----RLEFDEFVTLAAKF-------IVEEDD 51
DI + + ++ E G + F +F+ + +
Sbjct: 49 DICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEP 108
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
+++ F ++DKDG+G I K + + E+ + D D +G +D
Sbjct: 109 TLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDV 168
Query: 112 D 112
D
Sbjct: 169 D 169
Score = 54.7 bits (132), Expect = 1e-10
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 41 LAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI-----PTSCLKEILRELDDQLTNEELD 95
A K + D+ K + F D +GNG I + +I +L+ +
Sbjct: 5 YAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRH 64
Query: 96 GMIDEIDSDGSGT-----VDFD 112
+ E G G + F
Sbjct: 65 QVCVEAFFRGCGMEYGKEIAFP 86
Score = 44.7 bits (106), Expect = 6e-07
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA 53
++ G +++ + D D +G L+ DE F D EA
Sbjct: 138 YGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLDPEA 186
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 95.3 bits (238), Expect = 9e-27
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREA 61
+ D+LR GQ I E+++ ++ ++F+ + + D +E +
Sbjct: 27 IGDLLRACGQ----NPTLAEITEIESTLPAEVDMEQFLQVLNR-PNGFDMPGDPEEFVKG 81
Query: 62 FRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
F+++DKD G I L+ +L L ++L+NEE+D ++ + G V++
Sbjct: 82 FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYH 131
Score = 57.9 bits (141), Expect = 4e-12
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 53 AMQK-ELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
+ ++AF L+D+ G G IP + + ++LR T E I EI+S VD
Sbjct: 1 STDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDM 56
Query: 112 D 112
+
Sbjct: 57 E 57
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 95.3 bits (238), Expect = 2e-26
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
L+ +G + + +L++ D D SG +++ EF+ E ++ L AF +
Sbjct: 53 LKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIERED----HLFAAFTYF 108
Query: 66 DKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
DKDG+GYI L++ E + + ++ ++ ++D D G +D++
Sbjct: 109 DKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYN 153
Score = 75.6 bits (187), Expect = 9e-19
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 35 FDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEEL 94
++F +A + I E E L+E F + D D +G I LK L+ + L E+
Sbjct: 6 MNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEI 65
Query: 95 DGMIDEIDSDGSGTVDFD 112
++ D D SGT+D+
Sbjct: 66 LDLMQAADVDNSGTIDYK 83
Score = 32.1 bits (74), Expect = 0.019
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTL 41
++EL+ +VD D GR++++EFV +
Sbjct: 135 IEELMRDVDQDNDGRIDYNEFVAM 158
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 94.2 bits (235), Expect = 6e-26
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 5 ILRLMGQ-PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L PFN + +I D + + F EF + + + FR
Sbjct: 32 ALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI----------TDWQNVFR 81
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
YD+D +G I + LK+ L +L+++ D +I + D G G + FD
Sbjct: 82 TYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFD 130
Score = 57.2 bits (139), Expect = 1e-11
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELD-DQLTNEELDGMIDEIDSDGSGTVDFD 112
Q L F+ DKD +G I + L++ L + +I D + V+F
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
Score = 56.1 bits (136), Expect = 3e-11
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L G + + D LI + D G++ FD+F+ + L + FR
Sbjct: 98 QALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL----------QRLTDIFR 147
Query: 64 LYDKDGNGYI 73
YD D +G+I
Sbjct: 148 RYDTDQDGWI 157
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 92.7 bits (231), Expect = 1e-25
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRL 64
+ L P + +I+ D D +G ++F EF+ ++F V+ D E ++LR AFR+
Sbjct: 31 LPELQQNPL----VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKE---QKLRFAFRI 83
Query: 65 YDKDGNGYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGTVDFD 112
YD D +GYI L ++L+ L D + +D I D DG G + F+
Sbjct: 84 YDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFE 136
Score = 53.0 bits (128), Expect = 3e-10
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
D K L + F+ D D +G + + N + +ID D+DG+G VD
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPE----LQQNPLVQRVIDIFDTDGNGEVD 56
Query: 111 FD 112
F
Sbjct: 57 FK 58
Score = 31.4 bits (72), Expect = 0.031
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAK 44
+I+D+ I D D GR+ F+EF +
Sbjct: 116 QIVDKTIINADKDGDGRISFEEFCAVVGG 144
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 90.9 bits (226), Expect = 4e-25
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
++ E + ++++ + + A+ + E+ EL + F L I
Sbjct: 5 EKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFV---SELCKGFSLLADPERHLITAES 61
Query: 78 LKEILREL-DDQLTNEELDGMIDEIDSDGSGTVDFD 112
L+ L + ++ E+ GM+ E D DG G ++
Sbjct: 62 LRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97
Score = 36.5 bits (85), Expect = 4e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67
L + +K+ ++ E D D G L EF L + E ++A + L +A
Sbjct: 69 LGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDA-ETWLEKALTQELC 127
Query: 68 DGN 70
+ N
Sbjct: 128 NHN 130
Score = 30.4 bits (69), Expect = 0.073
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 91 NEELDGMIDEIDSDGSGTVDFD 112
M+ E S ++
Sbjct: 2 EPTEKSMLLETTSTTKMETKYE 23
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 90.4 bits (225), Expect = 3e-24
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
D + + + +D +++ VD D++G +E+ EFVT+ + E L AF+
Sbjct: 75 DTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRE----RLLAAFQ 130
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+D DG+G I L + ++ +E ++ E D + G VDF+
Sbjct: 131 QFDSDGSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEVDFE 177
Score = 54.2 bits (131), Expect = 2e-10
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 41 LAAKFIVEEDDEAMQK-ELREAFRLYDKDGNGYIPTSCLKE-----------ILRELDDQ 88
A F+ + + EL + FR D +G+G + L E + +LD
Sbjct: 24 AAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSS 83
Query: 89 LTNEELDGMIDEIDSDGSGTVDFD 112
E+D ++ +D D +G +++
Sbjct: 84 QIEAEVDHILQSVDFDRNGYIEYS 107
Score = 32.6 bits (75), Expect = 0.012
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + ++++E D + G ++F+EFV +
Sbjct: 149 FGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 89.0 bits (221), Expect = 1e-23
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA------- 53
+ I L P D +IE D S R++F FV + A F ED++
Sbjct: 50 DLQQIGALAVNPL----GDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKK 105
Query: 54 ------MQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEEL----DGMIDEID 102
+ +L AF+LYD D +G I + ++LR + Q+T E+L D + E D
Sbjct: 106 PEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEAD 165
Query: 103 SDGSGTVDFD 112
DG G V F
Sbjct: 166 EDGDGAVSFV 175
Score = 49.4 bits (118), Expect = 1e-08
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
L FR D++ GY+ L++I L N D +I+ DGS VDF
Sbjct: 29 LRLHHRFRALDRNKKGYLSRMDLQQI-GALAV---NPLGDRIIESFFPDGSQRVDFP 81
Score = 32.8 bits (75), Expect = 0.014
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED 50
+ I D ++E D D G + F EF K VE+
Sbjct: 154 ENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQK 189
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 88.7 bits (220), Expect = 1e-23
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSG-----RLEFDEFVTLAAKFIVEE-------DD 51
++ +G + + E +G ++ ++ K +E +
Sbjct: 45 IVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEP 104
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
++ F + DKD NG I K + ++E+ + D D SG +D
Sbjct: 105 TLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDV 164
Query: 112 D 112
D
Sbjct: 165 D 165
Score = 47.5 bits (113), Expect = 6e-08
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 42 AAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCL-----KEILRELDDQLTNEELDG 96
+K + D+ + F D + NG I + ++ L +
Sbjct: 2 NSKLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHK 61
Query: 97 MIDEIDSDGSGT 108
E G+G
Sbjct: 62 DAVEAFFGGAGM 73
Score = 43.3 bits (102), Expect = 2e-06
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA 53
+ G + + +E D D+SG+L+ DE F D
Sbjct: 134 YTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMDPAC 182
Score = 29.0 bits (65), Expect = 0.23
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 26 DADKSGRLEFDEFVTLAAKFIVEE-DDEAMQKELREAFRLYDKDGNGYIPTSCL------ 78
D + +G++ DE V A+ ++ Q + + G G
Sbjct: 26 DVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYI 85
Query: 79 ----------KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E + + L D + D +D D +G + D
Sbjct: 86 EGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLD 129
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 88.5 bits (220), Expect = 1e-23
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L G D L++++D+D SG++++ EF+ A + + +K + AFR
Sbjct: 76 KGLEKDGLK-LPYNFDLLLDQIDSDGSGKIDYTEFIAAAL-----DRKQLSKKLIYCAFR 129
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLT-----NEELDGMIDEIDSDGSGTVDFD 112
++D D +G I T+ L IL + + + MI ++D + G +DF
Sbjct: 130 VFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH 183
Score = 66.9 bits (164), Expect = 3e-15
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 37 EFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDG 96
+F LA I ++ ++ ++L+ F + D+DG GYI LK+ L + +L D
Sbjct: 33 KFQKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDL 91
Query: 97 MIDEIDSDGSGTVDFD 112
++D+IDSDGSG +D+
Sbjct: 92 LLDQIDSDGSGKIDYT 107
Score = 33.0 bits (76), Expect = 0.009
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + + + +I +VD + G+++F EF +
Sbjct: 148 LYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 85.4 bits (212), Expect = 2e-23
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 34 EFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEE 93
E + + + + D E +E+REAFR+ DKDGNGYI + L+ ++ L ++LT+EE
Sbjct: 11 SSGENLYFQSL-MKDTDSE---EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEE 66
Query: 94 LDGMIDEIDSDGSGTVDFD 112
+D MI E D DG G V+++
Sbjct: 67 VDEMIREADIDGDGQVNYE 85
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
++ +G+ + +DE+I E D D G++ ++EFV +
Sbjct: 54 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 90
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 86.1 bits (214), Expect = 4e-23
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
R +G + ++ E L +++++ + + ++D+ +EL + F
Sbjct: 39 YNARKLGLAPSSIDEKKIKELYG----DNLTYEQYLEYLSICVHDKDNV---EELIKMFA 91
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+D + GY+ S +K IL D LT++E ++ S+ +D+
Sbjct: 92 HFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSE--DNIDYK 138
Score = 50.7 bits (122), Expect = 3e-09
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
E E +K G I R+L ++ + + + + +
Sbjct: 11 EEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTY 66
Query: 112 D 112
+
Sbjct: 67 E 67
Score = 28.3 bits (64), Expect = 0.36
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
IL G + + + ++ +++ F
Sbjct: 109 ILTTWGDALTDQEAIDALNAFSSE--DNIDYKLFCED 143
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 83.4 bits (207), Expect = 9e-23
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 48 EEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSG 107
E M E + AF ++D DG G I T L ++R L T EELD +I+E+D DGSG
Sbjct: 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSG 71
Query: 108 TVDFD 112
T+DF+
Sbjct: 72 TIDFE 76
Score = 45.3 bits (108), Expect = 9e-08
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEE 49
++R++GQ K+ LD +IEEVD D SG ++F+EF+ + + + E+
Sbjct: 45 VMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKED 89
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 83.3 bits (207), Expect = 1e-22
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 28 DKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDD 87
SG ++ D+ K + E E L+E F++ D D +G I LK+ L+ +
Sbjct: 1 HSSGHIDDDD------KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGS 54
Query: 88 QLTNEELDGMIDEIDSDGSGTVDFD 112
+L E+ ++D D D SGT+D+
Sbjct: 55 ELMESEIKDLMDAADIDKSGTIDYG 79
Score = 38.7 bits (91), Expect = 3e-05
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
L+ +G + + +L++ D DKSG +++ EF+
Sbjct: 48 GLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 81.4 bits (202), Expect = 5e-22
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
A ++L+ AFR +D+DG+G+I L+ + L L EELD MI E D D G V++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 112 D 112
+
Sbjct: 62 E 62
Score = 36.7 bits (86), Expect = 1e-04
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ +GQP ++ LD +I E D D+ GR+ ++EF + A+
Sbjct: 30 RAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLAQ 70
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 80.7 bits (200), Expect = 1e-21
Identities = 28/62 (45%), Positives = 45/62 (72%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
D ++EL+EAF+++DKD NGYI S L+ ++ L ++LT+EE++ MI E D DG G V+
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 111 FD 112
++
Sbjct: 64 YE 65
Score = 43.4 bits (103), Expect = 5e-07
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
++ +G+ + ++++I+E D D G++ ++EFV + LR F
Sbjct: 34 VMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR-GGGGGNGWSRLRRKFS 91
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 82.5 bits (204), Expect = 2e-21
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDD---EAMQKELREAFRLYDKDGNG 71
+ + L D D R+ +EFVT A K + ++ D E + L A + D DG+G
Sbjct: 54 EALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDG 113
Query: 72 YIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + L + + +D+DG G V
Sbjct: 114 AVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGET 152
Score = 50.1 bits (120), Expect = 5e-09
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQL---------------TNEELDGMID 99
++ + F +D+DGNG+I S + + + G+
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 100 EIDSDGSGTVDFD 112
D DG + +
Sbjct: 63 IADRDGDQRITRE 75
Score = 32.0 bits (73), Expect = 0.022
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEE 49
+ +D D G++ E V A++
Sbjct: 134 ARQAAAALDTDGDGKVGETEIVPAFARYFTVP 165
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 82.1 bits (203), Expect = 4e-21
Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA---MQKELREAFRLYDKDGNG 71
++ + +++ R+ +E A +++ E + + D D +G
Sbjct: 58 RQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDG 117
Query: 72 YIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
Y+ K L+ + LT+++ + +D + +G + D
Sbjct: 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRD 158
Score = 49.0 bits (117), Expect = 2e-08
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 46 IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL---------DDQLTNEELDG 96
I E + ++++ + D G+G+I + I + + T +E
Sbjct: 4 ITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLR 63
Query: 97 MIDEIDSDGSGTVDFD 112
+ D++ + +
Sbjct: 64 VADQLGLAPGVRISVE 79
Score = 41.6 bits (98), Expect = 7e-06
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKEL 58
L+ +G +D +K+G++ DEF+ F+ ++ A+
Sbjct: 127 FLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAF 180
Score = 33.9 bits (78), Expect = 0.005
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 26 DADKSGRLEFDEFVTLAAKFIV-----EEDDEAMQKELREAFRLYDKDGNGYI-----PT 75
D G + +++ +A + E E ++E I
Sbjct: 24 DVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAV 83
Query: 76 SCLKEILRELDDQLTNEELDGMI--DEIDSDGSGTVDFD 112
+ +L+ ++ + +I D ID+D G V
Sbjct: 84 NATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLP 122
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 82.2 bits (203), Expect = 6e-21
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKE-------LREAFRLYDK 67
+ + + L +++V F E + + E + + D
Sbjct: 80 RDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDD 139
Query: 68 DGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
DG+G + LK +++ D + E ++ D+D SG ++
Sbjct: 140 DGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERT 182
Score = 54.1 bits (130), Expect = 2e-10
Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 21 LIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKE 80
+ E ++ + + V +F VE+ M L + F +D D +G + +
Sbjct: 1 MTERLNEQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLY 60
Query: 81 ILREL---------DDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + + + + + +
Sbjct: 61 WPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE 101
Score = 36.3 bits (84), Expect = 7e-04
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA 53
E+ D DKSG+LE E V L KF +E D
Sbjct: 164 AYTFFEKADTDKSGKLERTELVHLFRKFWMEPYDPQ 199
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 79.3 bits (196), Expect = 7e-21
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 44 KFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDS 103
K+ +ED + + +E + +D +GNG I LK +L +L T+ EL +I E+ S
Sbjct: 20 KYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSS 79
Query: 104 DGSGTVDFD 112
T +
Sbjct: 80 GSGETFSYP 88
Score = 38.1 bits (89), Expect = 6e-05
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+L +G P L +LI EV + + +F+ +
Sbjct: 57 MLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLG 96
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 79.2 bits (196), Expect = 9e-21
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
+ + ++ V A+ G +F L + + ++++ F+ D D +G+I
Sbjct: 12 IKKALDAVKAE--GSFNHKKFFALVGLKAMSAN------DVKKVFKAIDADASGFIEEEE 63
Query: 78 LKEILRELD---DQLTNEELDGMIDEIDSDGSGTVDFD 112
LK +L+ LT+ E + D DG G + D
Sbjct: 64 LKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
G+ ++ D D G++ DEF TL
Sbjct: 71 FAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 106
Score = 25.2 bits (56), Expect = 3.5
Identities = 4/26 (15%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 87 DQLTNEELDGMIDEIDSDGSGTVDFD 112
D L +++ +D + ++ G+ +
Sbjct: 5 DLLKADDIKKALDAVKAE--GSFNHK 28
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 79.4 bits (196), Expect = 6e-20
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ + +PFN + ++ +D D SG + F+EF L A R+
Sbjct: 58 LTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL----------NGWRQ 107
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
F +D D +G + L++ L + +L+ + ++ + ++ G + FD
Sbjct: 108 HFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFD 157
Score = 49.4 bits (118), Expect = 1e-08
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L MG + + ++ + + +G++ FD+++ K + L ++FR
Sbjct: 127 KALTTMGFRLSPQAVNSIAKR--YSTNGKITFDDYIACCVKL----------RALTDSFR 174
Query: 64 LYDKDGNGYI 73
D G +
Sbjct: 175 RRDTAQQGVV 184
Score = 40.1 bits (94), Expect = 3e-05
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELD-----DQLTNEELDGMIDEIDSDGSGTV 109
Q L F +G I L+ L + E M+ +D D SGT+
Sbjct: 32 QDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 90
Query: 110 DFD 112
F+
Sbjct: 91 GFN 93
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 76.1 bits (188), Expect = 7e-20
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 46 IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105
+ ED + F+ +D +G+G I +S L + L+ L +T +E+ M+ EID+DG
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTL-GSVTPDEVRRMMAEIDTDG 59
Query: 106 SGTVDFD 112
G + FD
Sbjct: 60 DGFISFD 66
Score = 38.4 bits (90), Expect = 4e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAF 62
D L+ +G + ++ E+D D G + FDEF A + + K++ + F
Sbjct: 35 DALKTLGSV-TPDEVRRMMAEIDTDGDGFISFDEFTDFARA------NRGLVKDVSKIF 86
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 76.1 bits (188), Expect = 7e-20
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 48 EEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSG 107
+ Q+E +EAF+L+DKD + + L ++R L T +++ ++ + D D SG
Sbjct: 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSG 65
Query: 108 TVDFD 112
D +
Sbjct: 66 KFDQE 70
Score = 42.6 bits (101), Expect = 8e-07
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED 50
++R +G K+ + E++++ D D SG+ + + F+T+ ++ E D
Sbjct: 38 TVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYGQEVD 84
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 78.3 bits (193), Expect = 1e-19
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDE----AMQKELREAFRLYDKDGN 70
+ D L +E G L ++F+ + I E+ + + ++ + DK+ +
Sbjct: 57 GGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNAD 116
Query: 71 GYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
G I L L ++ E +++D++G+G + D
Sbjct: 117 GQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLD 156
Score = 44.7 bits (106), Expect = 5e-07
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 15/76 (19%)
Query: 52 EAMQKELREAFRLYDKDGNGYI----PTSCLKEILRELDDQLTNEEL-----------DG 96
L++ F +D DGNG + + I E+ D
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDY 62
Query: 97 MIDEIDSDGSGTVDFD 112
+ E G++ +
Sbjct: 63 LAKEAGVGSDGSLTEE 78
Score = 34.0 bits (78), Expect = 0.004
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAM 54
E +VD + +G L DE +T F D +
Sbjct: 138 AAEAFNQVDTNGNGELSLDELLTAVRDFHFGRLDVEL 174
Score = 34.0 bits (78), Expect = 0.005
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 26 DADKSGRLEFDEFVTLAAKFIV---EEDDEAMQKELREAFRLY--------DKDGNGYI- 73
D D +G LE +F A ++ A + L+ AF +G +
Sbjct: 17 DFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLT 76
Query: 74 -------PTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + E +++ + G++ D + G ++ D
Sbjct: 77 EEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 77.7 bits (192), Expect = 2e-19
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
++ +++ +D + G + + EF+ ++ E L+ AF DKD +GYI S
Sbjct: 75 INRILQALDINDRGNITYTEFMAGCYRWKNIESTF-----LKAAFNKIDKDEDGYISKSD 129
Query: 78 LKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDGKS 115
+ ++ + L N ++D + S G +
Sbjct: 130 IVSLVHD--KVLDNNDIDNFFLSVHSIKKGIPREHIIN 165
Score = 56.2 bits (136), Expect = 3e-11
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 41 LAAKFIVEE--DDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMI 98
+ + E K + E F D + NG + + +L + + +++ ++
Sbjct: 22 IIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRIL 79
Query: 99 DEIDSDGSGTVDFD 112
+D + G + +
Sbjct: 80 QALDINDRGNITYT 93
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 74.1 bits (183), Expect = 3e-19
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 57 ELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ F +DK+ +G + +E+ T E++ +EID DG+G ++ D
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD 57
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFI 46
++ F ++ + + EE+D D +G L DEF + K +
Sbjct: 25 EVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKML 67
Score = 26.3 bits (59), Expect = 0.99
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 26 DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
D +K G+L DEF +A F Q+++ + F D DGNG +
Sbjct: 11 DKNKDGKLSLDEFREVALAF----SPYFTQEDIVKFFEEIDVDGNGEL 54
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 77.9 bits (192), Expect = 4e-19
Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
G + + ++ D D +G + F EF+ + + F
Sbjct: 75 MGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM----------ELAYNLFV 124
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + +G + + L++L + ++ + + G D +
Sbjct: 125 MNARARSGTLEPHEILPALQQLGFYINQRTSL-LLHRLFARGMAFCDLN 172
Score = 55.9 bits (135), Expect = 7e-11
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 46 IVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDG 105
++ + + F D+D +G + + L +L+ + M+ D+D
Sbjct: 41 LLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDF 100
Query: 106 SGTVDFD 112
+G + F
Sbjct: 101 NGHISFY 107
Score = 35.1 bits (81), Expect = 0.002
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 16/74 (21%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRL- 64
L+ +G N++ L+ + A + + ++ + A + R A+++
Sbjct: 143 LQQLGFYINQRTSL-LLHRLFARGMAFCDLNCWIAICAFA----------AQTRSAYQMI 191
Query: 65 ----YDKDGNGYIP 74
Y + P
Sbjct: 192 FMNPYYGPMKPFNP 205
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 78.0 bits (192), Expect = 6e-19
Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 19/129 (14%)
Query: 3 ADILRLMGQPFNKKI------LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQK 56
++++ + Q K + +++ G++ E + Q+
Sbjct: 39 QNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQ 98
Query: 57 -----ELREAFRLYDKDGNGYIPTSCLKEILREL--------DDQLTNEELDGMIDEIDS 103
E + +R YD D +G+I T LK L++L DD E D M+ DS
Sbjct: 99 LKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDS 158
Query: 104 DGSGTVDFD 112
+ G ++
Sbjct: 159 NNDGKLELT 167
Score = 71.8 bits (176), Expect = 1e-16
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAK----FIVEEDDEAMQKELREAFRLYDKDGNGYI 73
D +++ D++ G+LE E L + + + KE +AF LYD+DGNGYI
Sbjct: 149 TDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYI 208
Query: 74 PTSCLKEILRELDDQLTNEELDGMIDEI-----DSDGSGTVDFD 112
+ L +L++L ++ E I G +
Sbjct: 209 DENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRT 252
Score = 55.3 bits (133), Expect = 1e-10
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 49 EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL------DDQLTNEELDGMIDEID 102
+ + E + +D DG+GY+ L+ +++EL + E+ +D+
Sbjct: 9 QSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYG 68
Query: 103 SDGSGTVDFD 112
G +
Sbjct: 69 QRDDGKIGIV 78
Score = 31.4 bits (71), Expect = 0.038
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 26 DADKSGRLEFDEFVTLAAK--FIVEEDDEAMQKELREAFRLYDKDGNGYI---------P 74
DAD SG LE E L + ++ + E++ Y + +G I P
Sbjct: 26 DADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLP 85
Query: 75 TSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
T +L + EE + D+D SG ++ +
Sbjct: 86 TEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETE 123
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 73.4 bits (181), Expect = 6e-19
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
M ++ F+ +D +G+G I S L + LR L + +E+ M+ EID+DG G +DF+
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSELTDALRTL-GSTSADEVQRMMAEIDTDGDGFIDFN 58
Score = 37.2 bits (87), Expect = 8e-05
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAF 62
D LR +G + + ++ E+D D G ++F+EF++ + + K++ + F
Sbjct: 27 DALRTLGST-SADEVQRMMAEIDTDGDGFIDFNEFISFCNA------NPGLMKDVAKVF 78
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 75.7 bits (186), Expect = 7e-19
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 34 EFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEE 93
E + K+ EE+ +E + +D + G I LK ++ +L T+ E
Sbjct: 28 EINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLE 87
Query: 94 LDGMIDEIDSDGSGTVDFD 112
+ MI E+ S T+ +
Sbjct: 88 MKKMISEVTGGVSDTISYR 106
Score = 44.5 bits (105), Expect = 5e-07
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRL 64
++ +G P + ++I EV S + + +FV + + + + +
Sbjct: 75 MMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLG---------KRSAVLKLVMM 125
Query: 65 YDKDGNGYIPT 75
++ N P
Sbjct: 126 FEGKANESSPK 136
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 78.7 bits (194), Expect = 7e-19
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+L + L +L V+ D GR+ + V +A L FR
Sbjct: 146 QVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAND----------LAALVADFR 195
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
D + NG + +E L D + D D S V F
Sbjct: 196 KIDTNSNGTLSRKEFREHFVRLGFDKK-SVQDALFRYADEDESDDVGFS 243
Score = 77.9 bits (192), Expect = 1e-18
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIP 74
K + D L D D+S + F E+V L LR + D D +G +
Sbjct: 222 KSVQDALFRYADEDESDDVGFSEYVHLGLC----------LLVLRILYAFADFDKSGQLS 271
Query: 75 TSCLKEILRELD-DQLTNEELDGMIDEIDSDGSGTVDFD 112
++++L + + ++ + +D D S ++ +
Sbjct: 272 KEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
Score = 62.9 bits (153), Expect = 4e-13
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
K+ L L+++++ D SG + EED LR+ F
Sbjct: 80 AARGDAAAEKQRLASLLKDLEDDASGYNRLRPS----KPMLSEED----TNILRQLFLSS 131
Query: 66 DKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
G+G LK++L + D + L + +++D G + +
Sbjct: 132 AVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYI 178
Score = 35.6 bits (82), Expect = 0.002
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 20 ELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLK 79
+ + E + +L+ F + +E ++E + YD+
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERA 74
Query: 80 EILREL---DDQLTNEELDGMIDEIDSDGSGTVDF 111
E RE D + L ++ +++ D SG
Sbjct: 75 EREREAARGDAAAEKQRLASLLKDLEDDASGYNRL 109
Score = 34.4 bits (79), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEE 49
K + VD D S L + EFV L ++
Sbjct: 290 KKFEHQFSVVDVDDSKSLSYQEFVMLVLLMFHDD 323
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 74.1 bits (183), Expect = 9e-19
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
M + +++ I G ++ F L + +++E F + DKD
Sbjct: 2 MTKVLKADDINKAISAFKDP--GTFDYKRFFHLVGLKGKTDA------QVKEVFEILDKD 53
Query: 69 GNGYIPTSCLKEILRELD---DQLTNEELDGMIDEIDSDGSGTVDFD 112
+G+I LK +L+ L + E ++ DSD G + D
Sbjct: 54 QSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
G+ N L+ D+D G++ DEF +
Sbjct: 70 FSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 74.9 bits (184), Expect = 1e-18
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 20 ELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLK 79
+ E ++ L+ ++ +ED + + + + +D +GNG I LK
Sbjct: 19 QQEERLEGINKQFLDDPKYSN-------DEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLK 71
Query: 80 EILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+L +L T+ EL +I E+ S T +
Sbjct: 72 RMLEKLGVPKTHLELKRLIREVSSGSEETFSYS 104
Score = 36.0 bits (83), Expect = 7e-04
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+L +G P L LI EV + + +F+ +
Sbjct: 73 MLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG 112
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 76.3 bits (188), Expect = 1e-18
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAM---------- 54
I L P D +I ++ ++ F F+ A F ED+E
Sbjct: 54 IPELAINPL----GDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLN 109
Query: 55 --QKELREAFRLYDKDGNGYIPTSCLKEILR-----ELDDQLTNEELDGMIDEIDSDGSG 107
+L AFRLYD D + I L ++LR + D+ D I E D DG
Sbjct: 110 SRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDS 169
Query: 108 TVDFD 112
+ F
Sbjct: 170 AISFT 174
Score = 44.8 bits (106), Expect = 8e-07
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
L F DK NG + + I EL + +I+ S+G V+F
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQRI-PELAINPLGDR---IINAFFSEGEDQVNFR 81
Score = 32.1 bits (73), Expect = 0.026
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
I D I+E D D + F EFV + K
Sbjct: 153 GSIADRTIQEADQDGDSAISFTEFVKVLEK 182
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 75.5 bits (186), Expect = 2e-18
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
L +G ++ + + + D + SG L+ +EF+ + + + + AF
Sbjct: 63 LAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREA----VIAAAFAKL 118
Query: 66 DKDGNGYIPTSCLKEILR-------ELDDQLTNEELDGMIDEIDS-DGSGTVDFD 112
D+ G+G + L+ + + +E L +D DS + G V
Sbjct: 119 DRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLA 173
Score = 62.7 bits (153), Expect = 1e-13
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ L FR D+DG+ + ++ L +L L E +G+ + D +GSGT+D +
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
Score = 36.2 bits (84), Expect = 7e-04
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 26 DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85
D D S L+ DEF AK + D E R +D++G+G + LR
Sbjct: 47 DRDGSRSLDADEFRQGLAKLGLVLDQA----EAEGVCRKWDRNGSGTLDLEEFLRALRPP 102
Query: 86 DDQLTNEELDGMIDEIDSDGSGTVDFD 112
Q + ++D G G V D
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTVD 129
Score = 29.6 bits (67), Expect = 0.14
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 8 LMGQPFNKKILDELIEEVDA-DKSGRLEFDEFVTLAAKFIVE-EDDEAMQKELREAFRL 64
G+ ++L ++ D+ +K G++ EF + DE + A++L
Sbjct: 144 RSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL 202
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 74.3 bits (183), Expect = 2e-18
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDG 69
PF+ + +I +D D +G++ F+ F L A +E F D+DG
Sbjct: 34 YSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA----------LNAWKENFMTVDQDG 83
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+G + L++ + + +L+ + L ++ + G + FD
Sbjct: 84 SGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFD 124
Score = 47.7 bits (114), Expect = 4e-08
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+ LMG + + L +++ K+GR+ FD++V K + L + FR
Sbjct: 94 QAIGLMGYRLSPQTLTTIVKR--YSKNGRIFFDDYVACCVK----------LRALTDFFR 141
Query: 64 LYDKDGNGYI 73
D G
Sbjct: 142 KRDHLQQGSA 151
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 58 LREAFRLYDKDGNGYIPTSCLKEILREL-----DDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ F +G + L+ L + + E MI +D D +G + F+
Sbjct: 2 VYTYFSA-VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 71.8 bits (177), Expect = 3e-18
Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 47 VEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL-DDQLTNEELDGMIDEIDSDG 105
V +DDE +E+ AF+++D +G+G I K I++++ ++ LT+ E++ + E D DG
Sbjct: 2 VRQDDE---EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDG 58
Query: 106 SGTVDFD 112
+G +D
Sbjct: 59 NGVIDIP 65
Score = 32.1 bits (74), Expect = 0.008
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
++ +P ++E ++E D D +G ++ EF+ L K
Sbjct: 36 KVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKK 73
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 71.8 bits (177), Expect = 3e-18
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
E ++E++EAF L+D + G I LK +R L + E+ +++E D +G+G + F
Sbjct: 3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGF 62
Query: 112 D 112
D
Sbjct: 63 D 63
Score = 40.9 bits (97), Expect = 3e-06
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 5 ILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEED 50
+R +G K + EL+ E D + +G + FD+F+ + + I D
Sbjct: 32 AMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIKNRD 77
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 73.7 bits (181), Expect = 8e-18
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDD-----EAMQKELREAFRLYDKDG 69
K I D L + D ++ ++ +E++ + A+ + + E + K + F + D G
Sbjct: 63 KLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSG 122
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ I + + + D D + G V +
Sbjct: 123 DNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTRE 163
Score = 37.1 bits (86), Expect = 3e-04
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 16/78 (20%)
Query: 51 DEAMQKELREAFR-LYDKDGNGYIPTSCLKEILRELDD---------------QLTNEEL 94
+ + ++ F YD + +G I + ++++ +
Sbjct: 7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIW 66
Query: 95 DGMIDEIDSDGSGTVDFD 112
DG+ D + V +
Sbjct: 67 DGLRKYADENEDEQVTKE 84
Score = 34.8 bits (80), Expect = 0.002
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 20/107 (18%)
Query: 26 DADKSGRLEFDEFVTLAAKFI-----------VEEDDEAMQKELREAFRLYDKDGNGYI- 73
D + G +E+D+F K E ++ + D++ + +
Sbjct: 23 DCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVT 82
Query: 74 --------PTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E + + ++ M D D+ G +D
Sbjct: 83 KEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Score = 32.9 bits (75), Expect = 0.011
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA 53
K D + + + + F L ++ V D A
Sbjct: 140 IPKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSNDRGA 180
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 74.2 bits (182), Expect = 8e-18
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGY 72
+ + G +F EF+ D EL F D GN
Sbjct: 91 TKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFF----ELTVMFDEIDASGNML 146
Query: 73 IPTSCLKEILRELDDQ-LTNEELDGMIDEIDSDGSGTVDFD 112
+ K + +L+ E+ + E+D +G+G+V FD
Sbjct: 147 VDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFD 187
Score = 42.2 bits (99), Expect = 6e-06
Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 43 AKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILR----------ELDDQLTNE 92
+ I E ++ E F+ +DK+ G + + + D
Sbjct: 35 RQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRA 94
Query: 93 ELDGMIDEIDSDGSGTVDFD 112
+ G+ DF
Sbjct: 95 FDKSRTLGSKLENKGSEDFV 114
Score = 36.0 bits (83), Expect = 0.001
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKE 57
+L + L +E+D + +G + FDEF A+ ++ D +
Sbjct: 158 KLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGDPDNVP 208
Score = 31.0 bits (70), Expect = 0.059
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVT-----LAAKFIVEEDDEAMQKELREAFRL-YDKD 68
K+ EL ++ D +++G+L +DE + L + ++ ++ L +
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLE 106
Query: 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
G E L EL M DEID+ G+ VD +
Sbjct: 107 NKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEE 150
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 70.7 bits (174), Expect = 1e-17
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 11/107 (10%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
+ ++ +A + F ++++AF + D+D
Sbjct: 3 FSGILADADVAAALKACEAA--DSFNYKAFFAKVGL------TAKSADDIKKAFFVIDQD 54
Query: 69 GNGYIPTSCLKEILRELDDQ---LTNEELDGMIDEIDSDGSGTVDFD 112
+G+I LK L+ LT+ E + DSDG G + D
Sbjct: 55 KSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Score = 32.2 bits (74), Expect = 0.010
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ ++ D+D G + DE+ L
Sbjct: 71 FSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 69.6 bits (171), Expect = 3e-17
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQL------TNEELDGMIDEIDSDG 105
++ EL AF+ D +G+GY+ L+ + LD E +I D +
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
Query: 106 SGTVDFD 112
G + +
Sbjct: 63 DGKISKE 69
Score = 36.1 bits (84), Expect = 3e-04
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVE 48
+ + K+ +LI+ D + G++ +EF+ A+ + +
Sbjct: 42 LSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLCQ 81
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 69.9 bits (172), Expect = 4e-17
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
+ + A + EF D ++++AF + D+D +G+I
Sbjct: 11 VAAALAACSAA--DSFKHKEFFAKVGLASKSLD------DVKKAFYVIDQDKSGFIEEDE 62
Query: 78 LKEILRELDDQ---LTNEELDGMIDEIDSDGSGTVDFD 112
LK L+ LT+ E + + D DG G + D
Sbjct: 63 LKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVD 100
Score = 32.9 bits (76), Expect = 0.007
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + + D D G + DEF +
Sbjct: 70 FSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 73.6 bits (181), Expect = 7e-17
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 3 ADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAF 62
++ L + +D L+ +D D SG +E+ EF+ A + E + AF
Sbjct: 368 SNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRER----MERAF 423
Query: 63 RLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
+++DKDG+G I T L ++ + D + EEL+ +I+++D++ G VDF+
Sbjct: 424 KMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNE 474
Score = 45.8 bits (109), Expect = 4e-07
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 41 LAAKFIVEEDDEAMQ-KELREAFRLYDKDGNGYIPTSCLKEILREL-------------- 85
A ++ + + K+L E FR D + +G + L E
Sbjct: 315 AALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQN 374
Query: 86 DDQLTNEELDGMIDEIDSDGSGTVDF 111
+ +++D ++ +D DGSG++++
Sbjct: 375 EGSTIEDQIDSLMPLLDMDGSGSIEY 400
Score = 41.2 bits (97), Expect = 1e-05
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFI 46
+ + + L+ +IE+VD +K G ++F+EFV + F+
Sbjct: 439 LFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFV 483
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 70.1 bits (172), Expect = 1e-16
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ + +PFN + ++ +D D SG + F+EF L A R+
Sbjct: 27 LTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL----------NGWRQ 76
Query: 61 AFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
F +D D +G + L++ L + +L + ++ + + G + FD
Sbjct: 77 HFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGK--ITFD 126
Score = 47.8 bits (114), Expect = 4e-08
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
L MG N + ++ + + G++ FD+++ K + L ++FR
Sbjct: 96 KALTTMGFRLNPQTVNSIAKRYSTS--GKITFDDYIACCVKL----------RALTDSFR 143
Query: 64 LYDKDGNGYI 73
D G +
Sbjct: 144 RRDSAQQGMV 153
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 68.2 bits (167), Expect = 1e-16
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 41 LAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDE 100
F + D LR F D + +G + + + EL ++ + + +
Sbjct: 12 ENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL--RVRPADAEAVFQR 69
Query: 101 IDSDGSGTVDFD 112
+D+D G + F
Sbjct: 70 LDADRDGAITFQ 81
Score = 34.6 bits (80), Expect = 0.001
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
L + DA++SGRLE +EF L + V + F+ D D +G I
Sbjct: 29 LRSVFAACDANRSGRLEREEFRALCTELRVRPA------DAEAVFQRLDADRDGAI 78
Score = 32.7 bits (75), Expect = 0.006
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTL 41
+ + + +DAD+ G + F EF
Sbjct: 63 AEAVFQRLDADRDGAITFQEFARG 86
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 69.4 bits (170), Expect = 2e-16
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDG 69
F ++ +D+D +G+L F+EF L K+ + ++ +D D
Sbjct: 41 TDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI----------KKWQAIYKQFDVDR 90
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+G I +S L L +I SD G +DFD
Sbjct: 91 SGTIGSSELPGAFEAAGFHLNEHLYSMIIRR-YSDEGGNMDFD 132
Score = 46.6 bits (111), Expect = 1e-07
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
G N+ + +I +D+ G ++FD F++ + + AF+
Sbjct: 101 GAFEAAGFHLNEHLYS-MIIRRYSDEGGNMDFDNFISCLVRL----------DAMFRAFK 149
Query: 64 LYDKDGNGYI 73
DKDG G I
Sbjct: 150 SLDKDGTGQI 159
Score = 37.8 bits (88), Expect = 2e-04
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDG--------MIDEIDSDGS 106
++ R F D + + + L IL ++ + + + DG M+ +DSD +
Sbjct: 3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 107 GTVDFD 112
G + F+
Sbjct: 62 GKLGFE 67
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 67.7 bits (166), Expect = 3e-16
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
M + + + + I A + +F + D ++++ F + DKD
Sbjct: 2 MTDLLSAEDIKKAIGAFTAA--DSFDHKKFFQMVGLKKKSAD------DVKKVFHILDKD 53
Query: 69 GNGYIPTSCLKEILRELD---DQLTNEELDGMIDEIDSDGSGTVDFD 112
+G+I L IL+ L+ +E ++ D DG G + +
Sbjct: 54 KSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
Score = 33.4 bits (77), Expect = 0.004
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ + K L+ D D G++ +EF TL A+
Sbjct: 70 FSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAE 108
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 68.6 bits (168), Expect = 5e-16
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 26 DADKSGRLEFDEFVTLAAKFIVEED-DEAMQKELREAFRLYDKDGNGYIPTSCLKEILRE 84
++ F+ + + + ++ L FR D + + I
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122
Query: 85 LDDQLTNEELDGMIDEIDSDGSGTVDFD 112
L L D ID++ G + +
Sbjct: 123 L--GLDKTMAPASFDAIDTNNDGLLSLE 148
Score = 40.1 bits (94), Expect = 3e-05
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDD--QLTNEELDGMIDEI-------- 101
+ ++++ F D D +G I + + ++ E ++D +
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFL 61
Query: 102 -DSDGSGTVDFD 112
G +D
Sbjct: 62 TAVAGGKGIDET 73
Score = 37.8 bits (88), Expect = 2e-04
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 12/107 (11%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVE-EDDEAMQKELREAFRLY------DKDGN 70
+ +D DK G + +F ++A +F E E K L ++ G
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGG 67
Query: 71 GYI-----PTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
I S + + + L +D++ + D
Sbjct: 68 KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRD 114
Score = 34.3 bits (79), Expect = 0.003
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDD 51
+ +D + G L +EFV + F + + D
Sbjct: 130 APASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGD 163
Score = 32.0 bits (73), Expect = 0.019
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
+ L VD ++ + DE+ +++ +F D + +G +
Sbjct: 93 EGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKT------MAPASFDAIDTNNDGLL 145
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 68.3 bits (167), Expect = 1e-15
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 4 DILRLMG-QPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAF 62
+L L G K +D++ D +K G ++F EF+ + E+ ++ +L+ F
Sbjct: 44 TLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQ----KLKWYF 99
Query: 63 RLYDKDGNGYIPTSCLKEILR------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+LYD DGNG I + L ++ E ++ + +ID + G + +
Sbjct: 100 KLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE 155
Score = 33.6 bits (77), Expect = 0.007
Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 13 FNKKILDELIEE-VDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNG 71
+ + SG EF TL + + ++ + +D + +G
Sbjct: 16 VPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQV---YNTFDTNKDG 72
Query: 72 YIPTSCLKEILRELDDQL---TNEELDGMIDEIDSDGSGTVDFD 112
++ E + ++ + ++L D+DG+G++D +
Sbjct: 73 FV---DFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKN 113
Score = 32.5 bits (74), Expect = 0.019
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1 MVADILRLMGQPFN--KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
M + L GQ ++ ++ + ++D + G L +EF+ AK
Sbjct: 118 MFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAK 163
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 68.3 bits (167), Expect = 1e-15
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
++ + ++ + D + ++F E+V + + +L+ F+
Sbjct: 47 RFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEH----KLKWTFK 102
Query: 64 LYDKDGNGYIPTSCLKEILR-----------------ELDDQLTNEELDGMIDEIDSDGS 106
+YDKD NG I L +I+ + E +D + +D +G
Sbjct: 103 IYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGD 162
Query: 107 GTVDFD 112
G + +
Sbjct: 163 GQLSLN 168
Score = 45.2 bits (107), Expect = 4e-07
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 56 KELREAFRLY-DKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+L+E ++ + ++ +G + K + D++ + ++ M D++G T+DF
Sbjct: 22 AQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFL 79
Score = 32.5 bits (74), Expect = 0.018
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
++++D + VD + G+L +EFV A +
Sbjct: 147 EEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
Score = 31.3 bits (71), Expect = 0.038
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 25/122 (20%)
Query: 9 MGQPFNKKILDEL-------IEEV--------DADKSGRLEFDEFVTLAAKFIVEEDDEA 53
MGQ F+ + +E ++ + SG L EF EE
Sbjct: 1 MGQQFSWEEAEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEAT-- 58
Query: 54 MQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQL---TNEELDGMIDEIDSDGSGTVD 110
+ + FR +D +G+ I E + L+ L +L D D +G +D
Sbjct: 59 --QYVEAMFRAFDTNGDNTI---DFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCID 113
Query: 111 FD 112
Sbjct: 114 RQ 115
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 65.4 bits (160), Expect = 2e-15
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
+ + + + + A +F ++ + +L+E FR+ D D
Sbjct: 2 LTDILSPSDIAAALRDCQAP--DSFSPKKFFQISGM------SKKSSSQLKEIFRILDND 53
Query: 69 GNGYIPTSCLKEILRELDDQ---LTNEELDGMIDEIDSDGSGTVDFD 112
+G+I LK L+ + LT E + D DG G + +
Sbjct: 54 QSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
Score = 32.6 bits (75), Expect = 0.008
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + D D G++ +EF +
Sbjct: 70 FESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 69.3 bits (170), Expect = 3e-15
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
+ + +D++++ VD DK+G +E+ EFVT+A E L AFR++D D
Sbjct: 375 LDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRER----LERAFRMFDSD 430
Query: 69 GNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
+G I ++ L I + +E ++ E+D + G VDFD
Sbjct: 431 NSGKISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFDE 473
Score = 44.7 bits (106), Expect = 1e-06
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILRE-----------LDDQLTNEELDGMIDEIDSD 104
KEL F DK+G+G + + L E +E LD E+D ++D +D D
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFD 394
Query: 105 GSGTVDF 111
+G +++
Sbjct: 395 KNGYIEY 401
Score = 37.4 bits (87), Expect = 3e-04
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + ++ EVD + G ++FDEF +
Sbjct: 444 FGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQM 477
Score = 24.7 bits (54), Expect = 9.2
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 79 KEILRELDDQLTNEE----LDGMIDEIDSDGSGTVDFD 112
+ L + +LT+++ L + ++D +G G +D
Sbjct: 318 QAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRA 355
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 68.6 bits (168), Expect = 4e-15
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD 66
L ++ +D +++EVD DK+G +E+ EF+++ + +E LR AF L+D
Sbjct: 390 ELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEER----LRRAFNLFD 445
Query: 67 KDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
D +G I L + ++ + + ++ E D + +DFD
Sbjct: 446 TDKSGKITKEELANLFGL--TSISEKTWNDVLGEADQNKDNMIDFDE 490
Score = 46.6 bits (111), Expect = 2e-07
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 41 LAAKFIVEEDDEAMQ-KELREAFRLYDKDGNGYIPTSCLKEILREL--------DDQLTN 91
A FI + + KEL + F+ DK+G+G + L E L + +
Sbjct: 339 AAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVE 398
Query: 92 EELDGMIDEIDSDGSGTVDF 111
EE+D ++ E+D D +G +++
Sbjct: 399 EEVDNILKEVDFDKNGYIEY 418
Score = 37.8 bits (88), Expect = 3e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
++K ++++ E D +K ++FDEFV++
Sbjct: 461 FGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSM 494
Score = 24.7 bits (54), Expect = 8.5
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 79 KEILRELDDQLTN-EELDGMID---EIDSDGSGTVDFD 112
+ + + +LT EE + D ++D +G G +D
Sbjct: 338 QAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKK 375
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 67.4 bits (165), Expect = 1e-14
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
+ + + P + +D ++ D D++G +++ EFVT+A + L AF+
Sbjct: 378 EEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDK----LESAFQ 433
Query: 64 LYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
+D+DGNG I L + D L ++ MI IDS+ G VDF+
Sbjct: 434 KFDQDGNGKISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVDFEE 481
Score = 45.8 bits (109), Expect = 4e-07
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILREL--------DDQLTNEELDGMIDEIDSDGSG 107
KEL + FR DK+G+G + L + +L D E+D ++ D D +G
Sbjct: 346 KELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNG 405
Query: 108 TVDF 111
+D+
Sbjct: 406 YIDY 409
Score = 38.1 bits (89), Expect = 2e-04
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
K E+I +D++ G ++F+EF +
Sbjct: 452 FGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Score = 25.4 bits (56), Expect = 6.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 79 KEILRELDDQLTN-EELDGMID---EIDSDGSGTVDFD 112
+ L + +LT+ EE + D ID +G G +D
Sbjct: 329 QAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQ 366
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 63.0 bits (154), Expect = 2e-14
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
+ + K ++ + A + F + D ++++ F + D+D
Sbjct: 3 ITDILSAKDIESALSSCQAA--DSFNYKSFFSTVGLSSKTPD------QIKKVFGILDQD 54
Query: 69 GNGYIPTSCLKEILREL---DDQLTNEELDGMIDEIDSDGSGTVDFD 112
+G+I L+ L+ LT+ E + D+DG G + +
Sbjct: 55 KSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 101
Score = 32.2 bits (74), Expect = 0.012
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + D D G++ +EF +L
Sbjct: 71 FSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 64.2 bits (156), Expect = 3e-14
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFI-----VEEDDEAMQKELREAFRLYDKDG 69
+ +L D +K + ++E++ + K I V + Q + F+ D G
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+G + + + L ++ + + I G T D +
Sbjct: 119 DGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLN 159
Score = 32.2 bits (73), Expect = 0.017
Identities = 2/41 (4%), Positives = 11/41 (26%)
Query: 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEA 53
+ + + + + + L + + +A
Sbjct: 136 LQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADA 176
Score = 30.7 bits (69), Expect = 0.059
Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 20/107 (18%)
Query: 26 DADKSGRLEFDEFVTLAAKFIV-----------EEDDEAMQKELREAFRLYDKDGNGYI- 73
D + G ++ ++F + ++ + +++ E R+ D + + +
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVS 78
Query: 74 --------PTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + + +D G G VD +
Sbjct: 79 WEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLE 125
Score = 29.9 bits (67), Expect = 0.12
Identities = 7/78 (8%), Positives = 27/78 (34%), Gaps = 16/78 (20%)
Query: 51 DEAMQKELREAFR-LYDKDGNGYIPTSCLKEILRELDD---------------QLTNEEL 94
++ +++++ F D + +G I + ++++ + +E
Sbjct: 3 NDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEW 62
Query: 95 DGMIDEIDSDGSGTVDFD 112
+ D + V ++
Sbjct: 63 RDLKGRADINKDDVVSWE 80
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 64.0 bits (156), Expect = 5e-14
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPT 75
D + + D ++G +EF EFV F ++++ AF+LYD G+I
Sbjct: 74 LFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVH---EKVKFAFKLYDLRQTGFIER 130
Query: 76 SCLKEILR--------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
LKE++ L + + +D + D G +D D
Sbjct: 131 EELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Score = 32.8 bits (75), Expect = 0.011
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++D+ + D G+++ DE+ +
Sbjct: 154 EVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 63.6 bits (155), Expect = 6e-14
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 4 DILRLMGQ-PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAF 62
L P K ++++ E D +K G ++F E+V + + + D+ +LR F
Sbjct: 39 QFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQ----KLRWYF 94
Query: 63 RLYDKDGNGYIPTSCLKEILR------ELDDQLTNEEL-DGMIDEIDSDGSGTVDFD 112
+LYD DGNG I L I++ ++ +T EE + + D+ID +G G + +
Sbjct: 95 KLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLE 151
Score = 32.1 bits (73), Expect = 0.021
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 13 FNKKILDELIEE-VDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNG 71
+ + ++ + SG+L EF + K + + F +D + +G
Sbjct: 11 LSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSAN---KYVEQMFETFDFNKDG 67
Query: 72 YIPTSCLKEILRELDDQL---TNEELDGMIDEIDSDGSGTVDFD 112
YI E + L L +++L D DG+G +D
Sbjct: 68 YI---DFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRG 108
Score = 31.3 bits (71), Expect = 0.046
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
++ + + +++D + G L +EF+ K
Sbjct: 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 60.4 bits (147), Expect = 2e-13
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 26 DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL 85
+ E +F + + ++++ FR D D +GY+ LK L++
Sbjct: 17 ECQDPDTFEPQKFFQTSGLSKMSAS------QVKDIFRFIDNDQSGYLDGDELKYFLQKF 70
Query: 86 DDQ---LTNEELDGMIDEIDSDGSGTVDFD 112
LT E ++D D+DG G + D
Sbjct: 71 QSDARELTESETKSLMDAADNDGDGKIGAD 100
Score = 32.6 bits (75), Expect = 0.008
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ + + L++ D D G++ DEF +
Sbjct: 70 FQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 58.8 bits (143), Expect = 4e-13
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 55 QKELREAFRLYD-KDGN-GYIPTSCLKEILRELDDQLTN--EELDGMIDEIDSDGSGTVD 110
+E++ AF ++ K+G+ I LK +++ L L LD MI+E+D +G G V
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63
Query: 111 FD 112
F+
Sbjct: 64 FE 65
Score = 33.4 bits (77), Expect = 0.002
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 5 ILRLMGQPFNKKI--LDELIEEVDADKSGRLEFDEFVTLAAK 44
+++ +G K + LDE+IEEVD + G + F+EF+ + K
Sbjct: 32 VMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK 73
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 61.6 bits (149), Expect = 8e-13
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAA-------KFIVEEDDEAMQKELREAFRLYDK 67
++I + DA GRL+ +E + E E + +R YD
Sbjct: 56 QQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDA 115
Query: 68 DGNGYIPTSCLKEILREL--------DDQLTNEELDGMIDEIDSDGSGTVDFD 112
D +GYI + LK L++L +E D M+ D + G +D +
Sbjct: 116 DSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Score = 57.0 bits (137), Expect = 4e-11
Identities = 12/111 (10%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTL--------AAKFIVEEDDEAMQKELREAFRLYDKDG 69
D +++ D +K GRL+ ++ + + +++ + F YD
Sbjct: 150 TDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSR 209
Query: 70 NGYIPTSCLKEILREL--------DDQLTNEELDGMIDEIDSDGSGTVDFD 112
G + + ++++ ++ + ++ D + G +
Sbjct: 210 TGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKS 260
Score = 45.4 bits (107), Expect = 6e-07
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 51 DEAMQKELREAFRLYDKDGNGYIPTSCLKEILREL----------DDQLTNEELDGMIDE 100
+ ++ +D D NGYI L + R + D+ + +
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 101 IDSDGSGTVDFD 112
D+ G + +
Sbjct: 66 YDATFDGRLQIE 77
Score = 30.0 bits (67), Expect = 0.13
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 16/123 (13%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEF----VTLAAKFIVEEDDEAMQKELREA 61
R N ++ + DAD SG + E L + + + +
Sbjct: 94 FRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAM 153
Query: 62 FRLYDKDGNGYI------------PTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTV 109
+++DK+ +G + L+ + + + + D +G +
Sbjct: 154 MKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGAL 213
Query: 110 DFD 112
+
Sbjct: 214 EGP 216
Score = 27.0 bits (59), Expect = 1.7
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 17/104 (16%)
Query: 26 DADKSGRLEFDEFVTLAAKFIV------EEDDEAMQKELREAFRLYDKDGNGYI------ 73
DAD +G +E E + + DE +Q+ + YD +G +
Sbjct: 21 DADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELA 80
Query: 74 -----PTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
I R + E + + D+D SG +
Sbjct: 81 NMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAA 124
Score = 25.4 bits (55), Expect = 5.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTL 41
K + L+ D +K G+++ E
Sbjct: 239 DKFRECLLTHCDMNKDGKIQKSELALC 265
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 58.6 bits (142), Expect = 8e-13
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 56 KELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + F +D I + I LT+E+ D + +E+ + G + +
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYP 80
Score = 34.0 bits (78), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFV 39
I Q + D L E+ + GRL++ +F+
Sbjct: 48 AICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 83
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 60.2 bits (146), Expect = 2e-12
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 17 ILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIP-- 74
D + + D +G L F+EF + F + ++ +F+LYD G+I
Sbjct: 86 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID---DKIHFSFQLYDLKQQGFIERQ 142
Query: 75 ------TSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ L E L D + + +D +E D+ G +D +
Sbjct: 143 EVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKE 186
Score = 34.0 bits (78), Expect = 0.006
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 1 MVADILRLMGQPFN----KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
MV L G + I+D+ EE D G+++ +E+ +L +
Sbjct: 147 MVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 57.9 bits (139), Expect = 3e-11
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDG 69
F+ + +++ +D D SG+L EF L K ++ ++ +R D D
Sbjct: 569 SDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI----------QKYQKIYREIDVDR 618
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
+G + + +++ L E +L + ++ +D +DFD
Sbjct: 619 SGTMNSYEMRKALEEAGFKLPCQLHQVIVARF-ADDELIIDFDN 661
Score = 37.1 bits (85), Expect = 6e-04
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
L G ++ ++ AD ++FD FV + + L + F+
Sbjct: 631 LEEAGFKLPCQLHQVIVARF-ADDELIIDFDNFVRCLVRL----------EILFKIFKQL 679
Query: 66 DKDGNGYI 73
D + G I
Sbjct: 680 DPENTGTI 687
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 55.2 bits (133), Expect = 8e-11
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 13/107 (12%)
Query: 16 KILDELIEEVDADKS-GRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIP 74
+ + + L F++F+ L + F + + AFR++D D +G +
Sbjct: 60 PFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDI---KSHYAFRIFDFDDDGTLN 116
Query: 75 TSCLKEILR---------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
L ++ L + +D +++E D D GT++
Sbjct: 117 REDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Score = 29.7 bits (67), Expect = 0.13
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
K+++D ++EE D D+ G + EF + ++
Sbjct: 142 KQLIDNILEESDIDRDGTINLSEFQHVISR 171
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 54.5 bits (131), Expect = 2e-10
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 19 DELIEEVDADKS-GRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
+ + + L F++F+ L + F + + AFR++D D +G +
Sbjct: 94 ERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPD---IKSHYAFRIFDFDDDGTLNRED 150
Query: 78 LKEILRELDDQLTNEEL---------DGMIDEIDSDGSGTVDFD 112
L ++ L + + L D +++E D D GT++
Sbjct: 151 LSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Score = 30.6 bits (69), Expect = 0.064
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
K+++D ++EE D D+ G + EF + ++
Sbjct: 173 KQLIDNILEESDIDRDGTINLSEFQHVISR 202
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 51.0 bits (123), Expect = 3e-10
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 58 LREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
F+ D +G+G + +K + + + L + ID+DG+G +D +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 46.0 bits (110), Expect = 2e-08
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 17 ILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
+ + L +E+D + G + ++E +K ++++ L+ F+ D DGNG I
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQ----LLQLIFKSIDADGNGEI 53
Score = 31.8 bits (73), Expect = 0.008
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ N+++L + + +DAD +G ++ +EF
Sbjct: 26 VSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 53.7 bits (129), Expect = 3e-10
Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD 66
K + + DA+ G ++F EF+ + + ++ +L+ AF +YD
Sbjct: 54 NFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQ----KLKWAFSMYD 109
Query: 67 KDGNGYIPTSCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
DGNGYI + + EI++ D+ + + + ++D++ G + +
Sbjct: 110 LDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE 167
Score = 31.0 bits (70), Expect = 0.057
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+K +++ ++D ++ G+L +EF+ A
Sbjct: 146 EKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 53.6 bits (128), Expect = 8e-10
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDG 69
F ++ +D+D +G+L F+EF L K+ + ++ ++ D
Sbjct: 768 TDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI----------KKWQGIYKRFETDR 817
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
+G I ++ L L +I D +G +DFD
Sbjct: 818 SGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS-DETGNMDFDN 860
Score = 50.9 bits (121), Expect = 7e-09
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 11 QPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGN 70
F+ + ++ +D D +G+L EF L + + FR +D D +
Sbjct: 572 NGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRI----------RNYLTIFRKFDLDKS 621
Query: 71 GYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
G + ++ + +L + ++ +D +DFD
Sbjct: 622 GSMSAYEMRMAIEAAGFKLPCQLHQVIVARF-ADDELIIDFDN 663
Score = 36.7 bits (84), Expect = 8e-04
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
G N+ I +I +D++G ++FD F++ + + AFR
Sbjct: 828 GAFEAAGFHLNQHIYSMIIRRY-SDETGNMDFDNFISCLVRL----------DAMFRAFR 876
Query: 64 LYDKDGNGYIP 74
DK+G G I
Sbjct: 877 SLDKNGTGQIQ 887
Score = 32.8 bits (74), Expect = 0.018
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
+ G ++ ++ AD ++FD FV + + L + F+
Sbjct: 633 IEAAGFKLPCQLHQVIVARF-ADDELIIDFDNFVRCLVRL----------EILFKIFKQL 681
Query: 66 DKDGNGYIPTSCLKEILRELDDQLT 90
D + G I + + + +L
Sbjct: 682 DPENTGTIQLDLISWLSFSVLGKLA 706
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 53.1 bits (128), Expect = 1e-09
Identities = 10/99 (10%), Positives = 21/99 (21%), Gaps = 10/99 (10%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFV--TLAAKFIVEEDDEAMQKELREAFRLYDKDGNGY 72
+ E + L+F F L ++ + D +
Sbjct: 344 DPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTT-----ILNPHIHLMGDESAC 398
Query: 73 IPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
I + + L T + + G
Sbjct: 399 IAYIRITQYLDAGGIPRTAQSE---ETRVWHRRDGKWQI 434
Score = 26.9 bits (60), Expect = 1.5
Identities = 3/21 (14%), Positives = 6/21 (28%)
Query: 18 LDELIEEVDADKSGRLEFDEF 38
V + G+ + F
Sbjct: 417 AQSEETRVWHRRDGKWQIVHF 437
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 49.5 bits (118), Expect = 2e-08
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD 66
+ Q + L D D +G + F++F+ + + E +L AF LYD
Sbjct: 93 QFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQE----KLNWAFNLYD 148
Query: 67 KDGNGYIPTSCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ +GYI + +I++ L + + ++ ++D + G V D
Sbjct: 149 INKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTID 206
Score = 30.6 bits (69), Expect = 0.064
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
++ ++ +++D +K G + DEF+ K
Sbjct: 185 RQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 49.1 bits (117), Expect = 2e-08
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67
+ + L D D +G + F+EF+T+ + +E +L AF LYD
Sbjct: 55 FFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEE----KLSWAFELYDL 110
Query: 68 DGNGYIPTSCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ +GYI + I+ D+ + + +D + G + D
Sbjct: 111 NHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD 167
Score = 32.1 bits (73), Expect = 0.019
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67
+ + ++ + +D ++ G + DEF + + A LYD
Sbjct: 146 EMRVKKIFKLMDKNEDGYITLDEFREGSKVD----------PSIIGALNLYDG 188
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 48.8 bits (116), Expect = 3e-08
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPT 75
L D ++G ++F++FVT + + E +LR F LYD + +GYI
Sbjct: 89 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHE----KLRWTFNLYDINKDGYINK 144
Query: 76 SCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ +I++ L + + +D ++D + G V D
Sbjct: 145 EEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 193
Score = 30.7 bits (69), Expect = 0.070
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
++ +D +++D +K G + DEF+ +
Sbjct: 172 RQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 47.5 bits (113), Expect = 5e-08
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPT 75
K + D +K GR+EF EF+ + DE +LR AF+LYD D +GYI
Sbjct: 63 KFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDE----KLRWAFKLYDLDNDGYITR 118
Query: 76 SCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + +I+ ++ + +D + +D + G +
Sbjct: 119 NEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQ 167
Score = 31.0 bits (70), Expect = 0.060
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD 66
+K +D + +D + G+L EF + + +A LYD
Sbjct: 146 EKRVDRIFAMMDKNADGKLTLQEFQEGSKAD----------PSIVQALSLYD 187
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 47.1 bits (112), Expect = 8e-08
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPT 75
+ + DADK+G ++F EF+ + E ++ +L AF+LYD D NG I
Sbjct: 63 AFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND----KLIWAFQLYDLDNNGLISY 118
Query: 76 SCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ I+ D+ + ++ + + +D + G + +
Sbjct: 119 DEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLE 167
Score = 33.3 bits (76), Expect = 0.009
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67
+K ++++ +D +K G+L +EF + + + A LYD
Sbjct: 146 EKRVNKIFNMMDKNKDGQLTLEEFCEGSKRD----------PTIVSALSLYDG 188
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 47.0 bits (111), Expect = 1e-07
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPT 75
L DAD +G + F++FV + + E +L+ AF LYD + +G I
Sbjct: 129 TYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHE----KLKWAFNLYDINKDGCITK 184
Query: 76 SCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ I++ L + E ++ ++D + G V D
Sbjct: 185 EEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTID 233
Score = 30.4 bits (68), Expect = 0.092
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ +++D ++ G + DEF+ K
Sbjct: 212 LEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 46.5 bits (110), Expect = 1e-07
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDG 69
G F+ L+ ++ +GRL+ +EF L + + F+
Sbjct: 40 GDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRL----------VHYQHVFQKVQ-TS 88
Query: 70 NGYIPTSCLKEILRELDDQLT---NEELDGMIDEIDSDGSGTVDFD 112
G + +S L + + D + EL ++ SD G V F
Sbjct: 89 PGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFP 134
Score = 39.5 bits (92), Expect = 4e-05
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 4 DILRLMGQPFNKKILDELIEEV---DADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
+ I EL+ V +D GR+ F V + + + +
Sbjct: 99 KAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRL----------EAMAK 148
Query: 61 AFRLYDKDGNG 71
FR KDG G
Sbjct: 149 TFRNLSKDGKG 159
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 46.3 bits (110), Expect = 1e-07
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 16 KILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPT 75
L D ++G ++F++FVT + + E +LR F LYD + +GYI
Sbjct: 56 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHE----KLRWTFNLYDINKDGYINK 111
Query: 76 SCLKEILR------------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ +I++ L + + +D ++D + G V D
Sbjct: 112 EEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 160
Score = 29.0 bits (65), Expect = 0.23
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
++ +D +++D +K G + DEF+ +
Sbjct: 139 RQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 44.0 bits (104), Expect = 4e-07
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 42 AAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEI 101
A++ V + + + R+ F +DK +G++ + IL + L +L + +
Sbjct: 3 VAEWAVPQSS---RLKYRQLFNSHDKTMSGHLTGPQARTILMQS--SLPQAQLASIWNLS 57
Query: 102 DSDGSGTVDFD 112
D D G + +
Sbjct: 58 DIDQDGKLTAE 68
Score = 33.2 bits (76), Expect = 0.005
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40
IL P + L + D D+ G+L +EF+
Sbjct: 36 ARTILMQSSLP--QAQLASIWNLSDIDQDGKLTAEEFIL 72
Score = 27.0 bits (60), Expect = 0.91
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
+ +L D SG L + T+ + + + L + L D D +G +
Sbjct: 13 RLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQ------LASIWNLSDIDQDGKL 65
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 44.2 bits (104), Expect = 1e-06
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67
K + D++ G L+F E+V + ++ +L AF LYD
Sbjct: 63 FFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQ----KLEWAFSLYDV 118
Query: 68 DGNGYIPTSCLKEILREL-------------DDQLTNEEL-DGMIDEIDSDGSGTVDFD 112
DGNG I + + EI+ + DD+ T E+ + + + +
Sbjct: 119 DGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEK 177
Score = 30.7 bits (69), Expect = 0.071
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+K +++ + + +L EF+
Sbjct: 156 EKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 40.8 bits (96), Expect = 4e-06
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
A + + E F DKD +G++ ++EI + L + L + D+ G +
Sbjct: 6 PAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKLSK 63
Query: 112 D 112
D
Sbjct: 64 D 64
Score = 30.8 bits (70), Expect = 0.028
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40
V +I G P +L + D G+L D+F
Sbjct: 32 VREIFLKTGLP--STLLAHIWSLCDTKDCGKLSKDQFAL 68
Score = 27.0 bits (60), Expect = 0.84
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
K DE+ + D D G + E + K L + L D G +
Sbjct: 9 KAKYDEIFLKTDKDMDGFVSGLEVREIFLKT------GLPSTLLAHIWSLCDTKDCGKL 61
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 43.0 bits (100), Expect = 5e-06
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 49 EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGT 108
+ + +Q + R DK+ + + LK+ L+EL+ Q+ + + E D + +
Sbjct: 4 DQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDS 63
Query: 109 VDFD 112
++ +
Sbjct: 64 LEDE 67
Score = 34.9 bits (79), Expect = 0.003
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREA 61
+ D L+ + + ++ E D ++ LE +E T + E+ A
Sbjct: 33 LKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLT-------QRAEIDRA 85
Query: 62 FRLYDKDGNGYIPTSCLKEILRE 84
F + L L+
Sbjct: 86 FEEAAGSAE-TLSVERLVTFLQH 107
Score = 34.1 bits (77), Expect = 0.005
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
+ + + D +K ++ F E + ++ DD R+ FR D +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDG----YARKIFRECDHSQTDSLEDEE 68
Query: 78 LKEILRELDDQLTNEELDGMIDEIDSDGS 106
++ + L E+D +E
Sbjct: 69 IETFYKML---TQRAEIDRAFEEAAGSAE 94
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 40.5 bits (95), Expect = 8e-06
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
E ++ FR D + +I S K + +L+ EL + + D+D G +
Sbjct: 18 EEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKS--KLSIPELSYIWELSDADCDGALTL 75
Query: 112 D 112
Sbjct: 76 P 76
Score = 30.1 bits (68), Expect = 0.071
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40
+ L + E DAD G L EF
Sbjct: 44 AKNFFTKSKLS--IPELSYIWELSDADCDGALTLPEFCA 80
Score = 26.6 bits (59), Expect = 1.2
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 12 PFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNG 71
++ + D S + K + + L + L D D +G
Sbjct: 18 EEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPE------LSYIWELSDADCDG 71
Query: 72 YI 73
+
Sbjct: 72 AL 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-05
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 42/143 (29%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT----LAAKFIVEEDD------ 51
D+ + +K+ +D +I DA F ++ + KF+ E
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 52 -EAMQKELREAFRLYDK----------DGNGYIPTSC--------LKEILRELDDQLTNE 92
++ E R+ + D + + L++ L EL N
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNV 153
Query: 93 ELDGMIDEIDSDGSGTVDFDGKS 115
+DG++ GS GK+
Sbjct: 154 LIDGVL------GS------GKT 164
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 40.1 bits (94), Expect = 1e-05
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
+ ++ F+ D NG+IP S KE + +L EL + + D D G +
Sbjct: 5 DEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGALTL 62
Query: 112 D 112
D
Sbjct: 63 D 63
Score = 30.5 bits (69), Expect = 0.036
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40
+ P L + E D DK G L DEF
Sbjct: 31 AKEFFTKSKLP--ILELSHIWELSDFDKDGALTLDEFCA 67
Score = 26.2 bits (58), Expect = 1.4
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
++ + + D +G + K + + L + L D D +G +
Sbjct: 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILE------LSHIWELSDFDKDGAL 60
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 37.1 bits (86), Expect = 1e-04
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 59 REAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFDG 113
+ +R + G + L++ L + L + D D+DG G +
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKS--GLPDLILGKIWDLADTDGKGVLSKQE 66
Score = 27.1 bits (60), Expect = 0.75
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40
A L+ G P IL ++ + D D G L EF
Sbjct: 33 AAAFLKKSGLP--DLILGKIWDLADTDGKGVLSKQEFFV 69
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 36.1 bits (83), Expect = 6e-04
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 49 EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILR--------ELDDQLTNEELDGMIDE 100
E + + Q+ F+++D DGN + L + E ++ +EL +ID
Sbjct: 61 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG 120
Query: 101 I----DSDGSGTVDFD 112
+ D + G +D+
Sbjct: 121 VLRDDDKNNDGYIDYA 136
Score = 28.4 bits (63), Expect = 0.38
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 16 KILDELIEEVDADKSGRLEFDEFV 39
I+D ++ + D + G +++ EF
Sbjct: 116 NIIDGVLRDDDKNNDGYIDYAEFA 139
Score = 26.1 bits (57), Expect = 2.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 26 DADKSGRLEFDEFVTLAAKFIVEE--------DDEAMQKELREAFRLYDKDGNGYI 73
D D + L+ E T EE ++ + + R DK+ +GYI
Sbjct: 78 DYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYI 133
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 35.1 bits (81), Expect = 8e-04
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
M + + + +D++++++D + G++ F F +L A
Sbjct: 34 MEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAG 77
Score = 28.2 bits (63), Expect = 0.28
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 58 LREAFRLYDKDGNGYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ F + D GY+ L+ ++ + L++Q +D ++ ++D G V F
Sbjct: 11 MMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ 69
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 34.8 bits (80), Expect = 0.001
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREA 61
++ N+K D+LI+ +DA+ GR+ FDE+ TL I + + ++ +++
Sbjct: 46 HMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG-ITGPIAKLIHEQEQQS 99
Score = 25.2 bits (55), Expect = 3.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 79 KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
KE+ L D + D +I +D++ G + FD
Sbjct: 42 KELNHMLSDTGNRKAADKLIQNLDANHDGRISFD 75
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 34.4 bits (79), Expect = 0.001
Identities = 10/47 (21%), Positives = 28/47 (59%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47
+ ++ + +K ++DE+ + +DA++ +++F EF++L A +
Sbjct: 40 LTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALK 86
Score = 25.5 bits (56), Expect = 3.0
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 79 KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
KE+ + + +D + +D++ VDF
Sbjct: 42 KELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQ 75
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 34.0 bits (78), Expect = 0.002
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ +G+ ++ +L+ +D+++ ++F E+ +
Sbjct: 38 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
Score = 27.1 bits (60), Expect = 0.79
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 56 KELREAFRLY-DKDGN-GYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGT 108
+ F Y K+G+ + S LKE+L L + ++ +DS+
Sbjct: 10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 69
Query: 109 VDFD 112
VDF
Sbjct: 70 VDFQ 73
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 35.6 bits (81), Expect = 0.002
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 49 EDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGT 108
+ E R +F +D+ G + + L + + E ++ +D + G
Sbjct: 718 GISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGV 777
Query: 109 VDFD 112
V F
Sbjct: 778 VTFQ 781
Score = 29.1 bits (64), Expect = 0.35
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 6 LRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
L MG + ++ VD ++ G + F F+ ++ E D ++ +F++
Sbjct: 751 LISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMSR---ETADTDTADQVMASFKIL 807
Query: 66 DKDGNGYIPTSCLKEIL 82
YI L+ L
Sbjct: 808 A-GDKNYITVDELRREL 823
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 33.5 bits (77), Expect = 0.002
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 14 NKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ LD+L +E+D + G + F+EF L K
Sbjct: 45 GPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75
Score = 30.8 bits (70), Expect = 0.020
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 56 KELREAFRLYD-KDGN-GYIPTSCLKEILR-ELDDQLTNEE-LDGMIDEIDSDGSGTVDF 111
EL+ F Y K+G+ + LK++++ E L LD + E+D +G G V F
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 112 D 112
+
Sbjct: 67 E 67
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 34.1 bits (78), Expect = 0.002
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ +G+ ++ +L+ +D+++ ++F E+ +
Sbjct: 41 LTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
Score = 27.9 bits (62), Expect = 0.35
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 52 EAMQKELREAFRLY-DKDGN-GYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSD 104
E + F Y K+G+ + S LKE+L L + ++ +DS+
Sbjct: 9 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSN 68
Query: 105 GSGTVDFD 112
VDF
Sbjct: 69 RDNEVDFQ 76
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 33.6 bits (77), Expect = 0.002
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ + + +D++++E+D + G ++F EFV L A
Sbjct: 37 LQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
Score = 26.3 bits (58), Expect = 1.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 56 KELREAFRLY-DKDGN-GYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGT 108
+ L F + K+G+ + LK++L+ LD Q + +D ++ E+D +G G
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE 68
Query: 109 VDFD 112
VDF
Sbjct: 69 VDFQ 72
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 34.1 bits (78), Expect = 0.002
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ +G+ ++ +L+ +D+++ ++F E+ +
Sbjct: 50 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
Score = 28.0 bits (62), Expect = 0.45
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 56 KELREAFRLY-DKDGN-GYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGT 108
+ F Y K+G+ + S LKE+L L + ++ +DS+
Sbjct: 22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 81
Query: 109 VDFD 112
VDF
Sbjct: 82 VDFQ 85
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 33.7 bits (77), Expect = 0.003
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
L + N+K+++ ++E++D + +L F+EF+ L A+
Sbjct: 48 LKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
Score = 27.2 bits (60), Expect = 0.91
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 58 LREAFRLY-DKDGN-GYIPTSCLKEILR-ELDDQLTNE-----ELDGMIDEIDSDGSGTV 109
+ F Y K G+ + KE++R +L + L E ++ +++++D++ +
Sbjct: 14 IINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQL 73
Query: 110 DFD 112
F+
Sbjct: 74 SFE 76
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 33.7 bits (77), Expect = 0.003
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ F + ++ + +D +K ++F E+V A
Sbjct: 38 LQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
Score = 26.7 bits (59), Expect = 1.1
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 56 KELREAFRLY-DKDGNGY-IPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGT 108
+ F+ Y + G+ Y + + LKE+L++ + + + + +D++
Sbjct: 10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69
Query: 109 VDFD 112
VDF
Sbjct: 70 VDFV 73
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 33.3 bits (76), Expect = 0.004
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
M ++ + +K +D+L++++DA+ +++F EF+ A
Sbjct: 37 MEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
Score = 24.0 bits (52), Expect = 9.6
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 58 LREAFRLY-DKDGN-GYIPTSCLKEILRE-----LDDQLTNEELDGMIDEIDSDGSGTVD 110
+ + F Y +G+ + LK ++ + L + +D ++ ++D++G VD
Sbjct: 11 IIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVD 70
Query: 111 FD 112
F
Sbjct: 71 FS 72
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 32.9 bits (75), Expect = 0.005
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ A++ + + ++++++ ++D++K ++F+EFV L A
Sbjct: 38 LNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
Score = 24.4 bits (53), Expect = 7.6
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 79 KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E+ L Q ++ +++++DS+ VDF+
Sbjct: 40 AELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFN 73
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 32.8 bits (75), Expect = 0.005
Identities = 8/47 (17%), Positives = 25/47 (53%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47
+ ++ + + ++++D+++E +D++ G +F EF+ A
Sbjct: 37 INNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITT 83
Score = 25.1 bits (55), Expect = 3.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 79 KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E+ L++ E +D +++ +DS+G G DF
Sbjct: 39 NELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQ 72
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 32.9 bits (75), Expect = 0.005
Identities = 7/44 (15%), Positives = 23/44 (52%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ ++ +G+ +++ L +L+ +D + +++F E+ A
Sbjct: 39 LHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
Score = 24.8 bits (54), Expect = 4.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 79 KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
KE+ + +++ E L ++ +D + VDF
Sbjct: 41 KELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQ 74
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 32.1 bits (73), Expect = 0.009
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELRE 60
Q KK D +E+D + G + F EF+ L K + + +E +
Sbjct: 42 SPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK-MGVAAHKKSHEESHK 92
Score = 30.9 bits (70), Expect = 0.031
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 58 LREAFRLY-DKDGNG-YIPTSCLKEIL-RELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + + Y GN + LK++L E + + D E+D + G V+F
Sbjct: 12 IIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ 69
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 32.5 bits (74), Expect = 0.010
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 14 NKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
+ LDE ++ +D ++ L+F+E+ L +
Sbjct: 60 DVGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90
Score = 27.5 bits (61), Expect = 0.66
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 57 ELREAFRLY-DKDGN-GYIPTSCLKEILR-ELDDQLTNEE-LDGMIDEIDSDGSGTVDFD 112
+ F + ++G + + KE++ +L L + LD + +D + + F+
Sbjct: 23 TVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFN 82
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 31.7 bits (72), Expect = 0.012
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 8 LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
L + +D+L++ +D + ++F E+
Sbjct: 42 LCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
Score = 23.9 bits (52), Expect = 8.7
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 58 LREAFRLY-DKDGNGYIPTSCLKEILRELDDQLTN-----EELDGMIDEIDSDGSGTVDF 111
+ F Y ++G+ T KE+ + +L +D ++ +D + +DF
Sbjct: 12 MVTTFHKYSGREGSKL--TLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDF 69
Query: 112 D 112
Sbjct: 70 K 70
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 31.7 bits (72), Expect = 0.014
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 14 NKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
L ++ E+ D ++ +++F EF++L
Sbjct: 50 GTNYLADVFEKKDKNEDKKIDFSEFLSLLGD 80
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 32.1 bits (73), Expect = 0.015
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 52 EAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDF 111
+ + + F +G+I + + L L + D + G +D
Sbjct: 29 VEERAKHDQQFHSLK-PISGFITGDQARNFFFQS--GLPQPVLAQIWALADMNNDGRMDQ 85
Query: 112 D 112
Sbjct: 86 V 86
Score = 31.4 bits (71), Expect = 0.025
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVT 40
+ G P + +L ++ D + GR++ EF
Sbjct: 53 QARNFFFQSGLP--QPVLAQIWALADMNNDGRMDQVEFSI 90
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 31.7 bits (72), Expect = 0.015
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 1 MVADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAK 44
M ++ + +LD +++++D D G+L+F EF+ L
Sbjct: 41 MNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
Score = 24.4 bits (53), Expect = 7.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 79 KEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
E+ +Q LD M+ ++D D G +DF
Sbjct: 43 TELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQ 76
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 32.3 bits (73), Expect = 0.015
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 13 FNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGY 72
F ++ D L + L DE F + D+ LR F + DK+ +G
Sbjct: 60 FAVQMFDSLARK-RGIVKQVLTKDELK----DFYEQLTDQGFDNRLRTFFDMVDKNADGR 114
Query: 73 IPTSCLKEILR--------ELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ +KEI+ + +E +++E+D G ++ +
Sbjct: 115 LTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEME 162
Score = 26.2 bits (57), Expect = 2.1
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 29 KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQ 88
G L F K I + + ++ ++ + LK+ +L DQ
Sbjct: 39 VDGVLLRSRF----GKCIGMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQ 94
Query: 89 LTNEELDGMIDEIDSDGSGTVDFD 112
+ L D +D + G + +
Sbjct: 95 GFDNRLRTFFDMVDKNADGRLTAE 118
Score = 26.2 bits (57), Expect = 2.3
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 4 DILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
D + L + VD + GRL +E + A +++ E
Sbjct: 86 DFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTA 145
Query: 64 LY----DKDGNGYIPTSCLKEILRELDDQ 88
L D GYI L+ +L + +
Sbjct: 146 LIMEELDPTNLGYIEMEDLEALLLQSPSE 174
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 30.9 bits (70), Expect = 0.027
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 55 QKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVDFD 112
+ + F NG++ +K +L L+ +L + L + + D D G +D D
Sbjct: 14 KAKYDAIFDSLS-PVNGFLSGDKVKPVL--LNSKLPVDILGRVWELSDIDHDGMLDRD 68
Score = 29.0 bits (65), Expect = 0.16
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
V +L P IL + E D D G L+ DEF
Sbjct: 36 VKPVLLNSKLP--VDILGRVWELSDIDHDGMLDRDEFAVA 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.029
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 41/111 (36%)
Query: 12 PFNKKILDELIEEVDAD-KSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD-KDG 69
PF+ +L + ++ D + F+ K+++ +YD DG
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFN------------------AKDIQIP--VYDTFDG 465
Query: 70 NGYIPTSCLKEILRELDDQLTNEELDGMI--DEID----SDGSGT--VDFD 112
+ LR L ++ E + I + + T +DF
Sbjct: 466 SD----------LRVLSGSIS-ERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 31.9 bits (72), Expect = 0.032
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 39/106 (36%)
Query: 2 VADILR-------LMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKF----IVEE- 49
++++ + +PF+KK L V L A F ++
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN---------AQLVAIFGGQGNTDDY 169
Query: 50 -DDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEEL 94
+ ELR+ ++ Y + ++++ + L EL
Sbjct: 170 FE------ELRDLYQTY---------HVLVGDLIKFSAETL--SEL 198
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 31.6 bits (71), Expect = 0.033
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 17 ILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTS 76
L+ L+ D ++GR+ F T ++ + R F+ G+
Sbjct: 133 CLNWLLNVYDTGRTGRIRVLSFKTGIISLC----KAHLEDKYRYLFKQVA-SSTGFCDQR 187
Query: 77 CLKEILREL 85
L +L +
Sbjct: 188 RLGLLLHDS 196
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 29.7 bits (67), Expect = 0.068
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIV 47
+G + L+E++D +K + F E+VT +
Sbjct: 44 IGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALAL 82
Score = 24.7 bits (54), Expect = 5.3
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 58 LREAFRLY-DKDGNGYIPTSCLKEILRELDDQLT------NEELDGMIDEIDSDGSGTVD 110
L F Y ++G+ + T KE+ + +LT + E+ +++++D + V+
Sbjct: 12 LVAIFHKYSGREGDKH--TLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN 69
Query: 111 FD 112
F
Sbjct: 70 FQ 71
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 29.9 bits (67), Expect = 0.093
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 2 VADILRLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTL 41
+ P +L ++ + D DK G L+ +EF
Sbjct: 72 AKKEMVKSKLP--NTVLGKIWKLADVDKDGLLDDEEFALA 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.30
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 52 EAMQ-KELREAFRLYDKDGNGYIPTSCLK 79
E K+L+ + +LY D P +K
Sbjct: 18 EKQALKKLQASLKLYADDS---APALAIK 43
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 28.8 bits (65), Expect = 0.33
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 19/107 (17%)
Query: 8 LMGQPF--NKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLY 65
L G P +K+ L E + + L + + + ++ DE + L
Sbjct: 17 LPGGPLHMEEKLAVSLQEALQEGDTRALR-EVLEEIHPQDLLALWDELKGEHRYVVLTLL 75
Query: 66 DKDGNGYIPTSCLKEILRELDD--------QLTNEELDGMIDEIDSD 104
K E+L L L L +++E+ D
Sbjct: 76 PKAKAA--------EVLSHLSPEEQAEYLKTLPPWRLREILEELSLD 114
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 26.8 bits (59), Expect = 1.1
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 19/83 (22%)
Query: 49 EDDEAMQKE---LREAFRLYDKDGNGYIPTSCLKEIL------------RELDDQLTNEE 93
E+ + + + F L+D + +G + L+ + E D + EE
Sbjct: 10 EELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEE 69
Query: 94 LDGMID----EIDSDGSGTVDFD 112
M + +D++ V +
Sbjct: 70 RLRMREHVMKNVDTNQDRLVTLE 92
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.3
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 19 DELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFR 63
D L +E ++ + R E + L + + M++E RE +
Sbjct: 78 DRLTQEPESIRKWREEQRK--RLQEL---DAASKVMEQEWREKAK 117
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 26.9 bits (60), Expect = 1.6
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 2 VADILRLMGQPFNKKILDELIEEVD--ADKSGRLEFDEF-VTLAAKFIVEEDDEAMQKEL 58
++D + N K + + + A+ +G+ + V ++ED A
Sbjct: 164 ISD--GALINASNPKDFEAAVPLIKEGAEAAGK-SIADIDVAAYTCCSIDEDAAAAANAA 220
Query: 59 REAFRLYDKDGNGYIPTSCL----KEILRELDDQLTNEELDGMIDEIDSD 104
+ P + ++ + L + G I +D
Sbjct: 221 KIVVAFI--AAGSPPPVFERHGLPADTGKKFGELLGKGDFGGAIGAVDDA 268
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 26.8 bits (59), Expect = 1.7
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 80 EILRELDDQLTNEELDGMIDEIDSDG 105
E +++ +TN + D G
Sbjct: 263 ENKKKMAGAITNPMIQEAFDVATGAG 288
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 26.1 bits (58), Expect = 2.6
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 15 KKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKD 68
+ L+ +++ +D K G + + LA VE DDE E ++
Sbjct: 60 RSSLEAVVDTLDQMKQGLEDVSGLLELA----VEADDEETFNEAVAELDALEEK 109
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 26.2 bits (58), Expect = 2.9
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 41 LAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTNEELDGMIDE 100
LA ++ +D E M + N + + E+ ++D + L +
Sbjct: 222 LADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEM 281
Query: 101 IDSDGSGTVD 110
ID +G++
Sbjct: 282 IDRLMAGSLT 291
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 26.2 bits (58), Expect = 3.1
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 9 MGQPFNKKILDELIEEVDADKSGRLEFDEFVTLA-AKFIVEEDDEAMQKELREAFRLYDK 67
G+ + + + G+ ++D F A + + + E +Q + E ++
Sbjct: 152 TGRQAAETLFA--LRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALER 209
Query: 68 DGNGYIPTSCLKEILRELDDQLTNEELDGMIDEIDSDGSGTVD 110
L + + N D ++ E D +G +
Sbjct: 210 GELREEVNRILLAQMATMHA--LNARYDLLVWESDIVRAGLLQ 250
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 25.4 bits (55), Expect = 3.5
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 7 RLMGQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYD 66
+ + + KK + I E G+L FDE + E+ F YD
Sbjct: 37 KALVKLKLKKNTVDDISESLRQGGGKLNFDELRQ------DLKGKGHTDAEIEAIFTKYD 90
Query: 67 KDGNGYIPTSCLKEILRELDDQL 89
+DG+ + +++ +L+ +
Sbjct: 91 QDGDQELTEHEHQQMRDDLEKER 113
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin
synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE;
1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3
d.104.1.3
Length = 341
Score = 25.4 bits (56), Expect = 4.3
Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 7 RLMGQPFNKKILDELIEEVDADKS-GRLEFDEFVTL 41
L G + ++ + + ++ +D + + +E
Sbjct: 303 VLRGVKYEREDVLKALKTIDITRYFAGISREEIAEA 338
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 25.7 bits (55), Expect = 4.3
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 18 LDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSC 77
+ + DA +FD F + + E+ F+ K+ G I T
Sbjct: 198 IGWPSGKNDAIDLKAFDFDTFFKFYLALL-------ERSEIEGIFKELSKNK-GNITTVM 249
Query: 78 LKEILRELDDQLTNEEL 94
++ L ++ + +
Sbjct: 250 FRDFLNDMQRHPSLHKT 266
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 25.7 bits (56), Expect = 4.5
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 56 KELREAF---RLYDKDGNGYIPTSCLKEILRELDDQLTNEEL 94
+++ + G+ + L L L + + EL
Sbjct: 231 QQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYEL 272
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural
genomics, PSI-2, protein structure initiative; HET: PGE;
1.86A {Staphylococcus aureus subsp}
Length = 282
Score = 25.3 bits (55), Expect = 5.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 78 LKEILRELDDQLTNEELDGMIDEIDSDG 105
LK + +L +++ E+ + E D G
Sbjct: 237 LKTTINKLTGKISTSEMQRLNYEADGKG 264
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes,
cation-PI interactions, classical hydrogen bonds,
protein binding; 1.80A {Archaeoglobus fulgidus} SCOP:
c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Length = 275
Score = 25.2 bits (55), Expect = 5.9
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 78 LKEILRELDDQLTNEELDGMIDEIDSDG 105
L +L+ L+D++ + + + + D +
Sbjct: 230 LISVLKLLEDRIDTDTMRALNYQYDVEK 257
>3r6u_A Choline-binding protein; substrate binding protein,
ABC-transporter, extracellular, transport protein; 1.61A
{Bacillus subtilis} PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A
3ppr_A*
Length = 284
Score = 24.9 bits (54), Expect = 7.3
Identities = 4/28 (14%), Positives = 15/28 (53%)
Query: 78 LKEILRELDDQLTNEELDGMIDEIDSDG 105
L+ I++++ ++ + + E+D +
Sbjct: 238 LEGIIKKMLGKIDTATMQELNYEVDGNL 265
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 24.9 bits (55), Expect = 7.8
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 63 RLYDKDGNGYI 73
R D DG+ Y+
Sbjct: 93 RFQDVDGHAYV 103
>4exo_A Methyl-accepting chemotaxis protein; signaling protein,
chemotaxis receptor, PAS domain, four HEL bundle; HET:
MSE; 1.90A {Vibrio parahaemolyticus}
Length = 146
Score = 24.6 bits (54), Expect = 8.0
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 39 VTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYI 73
VT + + + ++ +E + + +GY
Sbjct: 26 VTAIKPLYDSDVNGSNKQAAKEILKAMRFESDGYF 60
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase;
2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
Length = 509
Score = 24.8 bits (53), Expect = 8.0
Identities = 6/58 (10%), Positives = 19/58 (32%)
Query: 10 GQPFNKKILDELIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDK 67
G + + L + + + + +V++ +RE + Y++
Sbjct: 39 GHEHRARQMAALARLLHQRMTDPRIGEWLEKVEGSPLVQDPLSDAAVNVREWRQAYER 96
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 24.6 bits (53), Expect = 9.9
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 32 RLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKDGNGYIPTSCLKEILRELDDQLTN 91
RL D F K +D +A K L AF ++ D + T+ + E+ L
Sbjct: 243 RLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEK 302
Query: 92 EELDGMIDEIDSDGS 106
E+ DE D +G
Sbjct: 303 LEIVLKGDEKDLEGK 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.139 0.379
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,081,026
Number of extensions: 131896
Number of successful extensions: 1429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 496
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)