BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12127
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 81 LPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLK--CPMHACPWTNSVLHLSEHLNQVH-HL 137
PC+ GC++ LP ++ +HE+ C+FR CP +C W S+ + HL H +
Sbjct: 4 FPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSI 63
Query: 138 HLLKGNGVNIEISNFKTKVSESETKVHKYVILMNCYSQYFICKL 181
L+G + ++ + +V++ +C+ +F+ L
Sbjct: 64 TTLQGEDIVFLATDINLPGAVD------WVMMQSCFGFHFMLVL 101
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 81 LPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLK--CPMHACPWTNSVLHLSEHLNQVH-HL 137
PC+ GC++ LP ++ +HE+ C+FR CP +C W S+ + HL H +
Sbjct: 5 FPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSI 64
Query: 138 HLLKGNGVNIEISNFKTKVSESETKVHKYVILMNCYSQYFICKL 181
L+G + ++ + +V++ +C+ +F+ L
Sbjct: 65 TTLQGEDIVFLATDINLPGAVD------WVMMQSCFGFHFMLVL 102
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 81 LPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLK--CPMHACPWTNSVLHLSEHLNQVH-HL 137
PC+ GC++ LP ++ HE+ C+FR CP +C W S+ + HL H +
Sbjct: 7 FPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSI 66
Query: 138 HLLKGNGVNIEISNFKTKVSESETKVHKYVILMNCYSQYFICKL 181
L+G + ++ + +V++ +C+ +F+ L
Sbjct: 67 TTLQGEDIVFLATDINLPGAVD------WVMMQSCFGFHFMLVL 104
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 30.8 bits (68), Expect = 0.86, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 23 CGVCLEPLDRGITSCQT-CGNLVCTSCAARLLKCPFCRITI 62
C VCL DR ++ CG+LVC CA L CP CR +
Sbjct: 16 CKVCL---DRAVSIVFVPCGHLVCAECAPGLQLCPICRAPV 53
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 14 KELIASISEC--GVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITIDYSW 66
K+ I S+SEC G+C+E L +T C + +C C ++ CPFCR + SW
Sbjct: 7 KDAIPSLSECQCGICMEILVEPVT--LPCNHTLCKPCFQSTVEKASLCCPFCRRRVS-SW 63
Query: 67 QRNVALERIFTKLEL 81
R +EL
Sbjct: 64 TRYHTRRNSLVNVEL 78
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 40 CGNLV-CTSCAARLLKCPFCRITI 62
CG+LV C CA L KCP CR TI
Sbjct: 42 CGHLVVCKDCAPSLRKCPICRSTI 65
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITI 62
E+ ++ C +C E D+ + + CG+L+CTSC + CPFCR I
Sbjct: 327 EMGSTFQLCKICAEN-DKDV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITI 62
E+ ++ C +C E D+ + + CG+L+CTSC + CPFCR I
Sbjct: 327 EMGSTFQLCKICAEN-DKDV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITI 62
E+ ++ C +C E D+ + + CG+L+CTSC + CPFCR I
Sbjct: 333 EMGSTFQLCKICAEN-DKDV-KIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITI 62
E+ ++ C +C E D+ + + CG+L+CTSC + CPFCR I
Sbjct: 329 EMGSTFQLCKICAEN-DKDV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITI 62
E+ ++ C +C E D+ + + CG+L+CTSC + CPFCR I
Sbjct: 329 EMGSTFQLCKICAEN-DKDV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 40 CGNLVC-TSCAARLLKCPFCRITIDY 64
CG+ VC SCAA+L CP CR +++
Sbjct: 36 CGHTVCCESCAAQLQSCPVCRSRVEH 61
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d
Length = 100
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLL-----KCPFCRITI 62
E IA + C +C E L R C C L C SC R L +CP CR +
Sbjct: 17 ESIAEVFRCFICXEKL-RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 40 CGNLV-CTSCAARLLKCPFCRITI 62
CG+LV C CA L KCP CR I
Sbjct: 313 CGHLVVCQECAPSLRKCPICRGII 336
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 27/106 (25%)
Query: 116 HACPWTNSVLHLSEHLNQVH-HLHLLKGNGVNIEISNFKTKVSESETKVHKYVILMN--- 171
H P+ N+++H ++ H ++ + G G+ +E+ +K ++YV +
Sbjct: 81 HGSPFVNAIIHKG--FDERHAYIGGMFGAGIYF---------AENSSKSNQYVYGIGGGT 129
Query: 172 ------------CYSQYFICKLCLYKKVLTMSFVQISNSSPFHFGV 205
C+ Q C++ L K L S +++++S P H V
Sbjct: 130 GCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSV 175
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 27/107 (25%)
Query: 115 MHACPWTNSVLHLSEHLNQVH-HLHLLKGNGVNIEISNFKTKVSESETKVHKYVILMN-- 171
H P+ N+++H ++ H ++ + G G+ +E+ +K ++YV +
Sbjct: 80 FHGSPFINAIIHKG--FDERHAYIGGMFGAGIYF---------AENSSKSNQYVYGIGGG 128
Query: 172 -------------CYSQYFICKLCLYKKVLTMSFVQISNSSPFHFGV 205
C+ Q C++ L K L S ++++++ P H V
Sbjct: 129 TGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSV 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,671,923
Number of Sequences: 62578
Number of extensions: 291060
Number of successful extensions: 840
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 36
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)