Query psy12127
Match_columns 263
No_of_seqs 237 out of 1237
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:23:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 99.9 2.9E-27 9.9E-32 203.7 6.2 145 75-225 1-156 (193)
2 3hcs_A TNF receptor-associated 99.9 2.2E-22 7.5E-27 168.7 7.1 117 14-136 12-134 (170)
3 3hct_A TNF receptor-associated 99.7 4.5E-17 1.5E-21 128.8 5.5 93 14-110 12-110 (118)
4 1rmd_A RAG1; V(D)J recombinati 99.6 9.6E-17 3.3E-21 126.2 2.9 92 14-109 17-115 (116)
5 3knv_A TNF receptor-associated 99.6 6.3E-17 2.2E-21 132.4 1.5 91 14-108 25-131 (141)
6 3ztg_A E3 ubiquitin-protein li 99.1 5.1E-11 1.7E-15 89.4 2.9 72 13-85 6-85 (92)
7 1t1h_A Gspef-atpub14, armadill 99.1 2.8E-11 9.4E-16 88.1 1.3 65 14-80 2-72 (78)
8 3lrq_A E3 ubiquitin-protein li 99.0 7.7E-11 2.6E-15 90.3 0.2 63 14-77 16-84 (100)
9 2y43_A E3 ubiquitin-protein li 98.9 1.2E-10 4.2E-15 88.6 0.8 66 14-80 16-86 (99)
10 2csy_A Zinc finger protein 183 98.9 6.5E-10 2.2E-14 81.5 3.6 64 13-78 8-75 (81)
11 2egp_A Tripartite motif-contai 98.9 2.1E-10 7.3E-15 83.2 1.0 61 14-76 6-78 (79)
12 1jm7_B BARD1, BRCA1-associated 98.9 4.3E-10 1.5E-14 88.3 2.7 65 14-79 16-83 (117)
13 2kr4_A Ubiquitin conjugation f 98.9 5.1E-10 1.8E-14 83.5 2.5 63 15-79 9-76 (85)
14 2ckl_A Polycomb group ring fin 98.9 5.5E-10 1.9E-14 86.4 1.7 66 14-80 9-83 (108)
15 3fl2_A E3 ubiquitin-protein li 98.8 5.9E-10 2E-14 88.2 1.2 64 15-80 47-117 (124)
16 2kre_A Ubiquitin conjugation f 98.8 9.6E-10 3.3E-14 84.6 2.3 65 14-80 23-92 (100)
17 1wgm_A Ubiquitin conjugation f 98.8 1.1E-09 3.8E-14 84.0 2.6 65 15-81 17-87 (98)
18 2ecv_A Tripartite motif-contai 98.8 8.2E-10 2.8E-14 80.7 1.0 61 14-76 13-84 (85)
19 2djb_A Polycomb group ring fin 98.8 1.5E-09 5.1E-14 77.8 2.2 50 14-64 9-62 (72)
20 4ayc_A E3 ubiquitin-protein li 98.8 8.4E-10 2.9E-14 89.2 0.8 48 15-64 48-99 (138)
21 2ecw_A Tripartite motif-contai 98.8 5.9E-10 2E-14 81.5 -0.1 61 14-76 13-84 (85)
22 2ysl_A Tripartite motif-contai 98.8 3E-09 1E-13 76.0 2.8 48 14-63 14-68 (73)
23 2ckl_B Ubiquitin ligase protei 98.8 1.6E-09 5.6E-14 89.7 1.5 67 14-81 48-121 (165)
24 2yur_A Retinoblastoma-binding 98.7 2.9E-09 1E-13 76.8 2.6 49 14-63 9-63 (74)
25 2yu4_A E3 SUMO-protein ligase 98.7 2.8E-09 9.7E-14 80.8 2.2 64 16-80 3-80 (94)
26 1z6u_A NP95-like ring finger p 98.7 2E-09 6.8E-14 88.5 1.3 64 15-80 73-143 (150)
27 2ecy_A TNF receptor-associated 98.7 3.9E-09 1.3E-13 74.3 2.4 48 14-63 9-61 (66)
28 3l11_A E3 ubiquitin-protein li 98.7 5.5E-09 1.9E-13 81.5 2.2 64 14-79 9-85 (115)
29 1bor_A Transcription factor PM 98.7 1E-08 3.6E-13 70.2 3.3 44 18-63 4-48 (56)
30 1jm7_A BRCA1, breast cancer ty 98.7 1.6E-09 5.5E-14 83.7 -1.1 61 15-77 16-84 (112)
31 2c2l_A CHIP, carboxy terminus 98.6 1.3E-08 4.4E-13 89.8 3.3 65 15-81 203-273 (281)
32 2d8t_A Dactylidin, ring finger 98.6 1.2E-08 4.2E-13 72.8 2.5 48 14-63 9-60 (71)
33 2ct2_A Tripartite motif protei 98.6 9.7E-09 3.3E-13 75.7 1.4 48 14-63 9-67 (88)
34 2ea6_A Ring finger protein 4; 98.6 1.4E-08 4.8E-13 71.4 1.4 50 14-63 9-67 (69)
35 4ic3_A E3 ubiquitin-protein li 98.6 9.4E-09 3.2E-13 74.4 0.4 48 14-63 18-66 (74)
36 2ecg_A Baculoviral IAP repeat- 98.5 8.9E-09 3.1E-13 74.6 0.1 48 14-63 19-67 (75)
37 3ng2_A RNF4, snurf, ring finge 98.5 2.3E-08 7.8E-13 70.9 1.7 50 15-64 5-63 (71)
38 2ysj_A Tripartite motif-contai 98.5 3E-08 1E-12 69.0 2.0 43 14-58 14-63 (63)
39 1e4u_A Transcriptional repress 98.5 3.1E-08 1E-12 72.8 2.2 51 13-64 4-62 (78)
40 2f42_A STIP1 homology and U-bo 98.5 3.9E-08 1.3E-12 83.3 2.7 65 14-80 100-170 (179)
41 1g25_A CDK-activating kinase a 98.5 2.5E-08 8.5E-13 69.9 1.2 46 19-64 2-55 (65)
42 1iym_A EL5; ring-H2 finger, ub 98.5 6.4E-08 2.2E-12 65.2 3.0 46 17-63 2-54 (55)
43 2ecj_A Tripartite motif-contai 98.5 4.9E-08 1.7E-12 66.4 1.9 43 14-58 9-58 (58)
44 2xeu_A Ring finger protein 4; 98.4 4.8E-08 1.6E-12 67.6 0.8 45 19-64 2-56 (64)
45 2ect_A Ring finger protein 126 98.4 1.5E-07 5.1E-12 68.0 3.2 52 13-64 8-64 (78)
46 1chc_A Equine herpes virus-1 r 98.4 1.3E-07 4.3E-12 66.6 2.5 44 19-63 4-51 (68)
47 3htk_C E3 SUMO-protein ligase 98.3 8.2E-08 2.8E-12 85.6 1.0 63 17-80 178-249 (267)
48 2yho_A E3 ubiquitin-protein li 98.3 8.7E-08 3E-12 70.4 0.5 49 14-64 12-61 (79)
49 2ecm_A Ring finger and CHY zin 98.3 2.9E-07 1E-11 61.8 2.4 43 19-63 4-54 (55)
50 2ep4_A Ring finger protein 24; 98.3 2.6E-07 8.8E-12 66.1 1.9 50 14-63 9-63 (74)
51 2kiz_A E3 ubiquitin-protein li 98.2 3.2E-07 1.1E-11 64.7 2.0 49 14-63 8-62 (69)
52 2ecn_A Ring finger protein 141 98.2 1.3E-07 4.6E-12 66.9 -0.0 46 15-63 10-59 (70)
53 1x4j_A Ring finger protein 38; 98.2 4.1E-07 1.4E-11 65.4 2.5 48 15-63 18-71 (75)
54 2ea5_A Cell growth regulator w 98.2 6E-07 2E-11 64.0 2.5 44 18-63 13-57 (68)
55 2l0b_A E3 ubiquitin-protein li 98.2 5.8E-07 2E-11 67.3 2.0 48 14-63 34-88 (91)
56 4ap4_A E3 ubiquitin ligase RNF 98.2 3.7E-07 1.3E-11 71.7 0.9 45 18-64 5-60 (133)
57 3t6p_A Baculoviral IAP repeat- 98.0 1.4E-06 4.8E-11 80.7 2.2 47 15-63 290-337 (345)
58 1v87_A Deltex protein 2; ring- 97.9 2.2E-06 7.6E-11 66.2 1.5 44 20-63 25-93 (114)
59 2vje_B MDM4 protein; proto-onc 97.9 1.4E-06 4.9E-11 61.0 0.3 45 19-63 6-55 (63)
60 4ap4_A E3 ubiquitin ligase RNF 97.9 2.6E-06 8.8E-11 66.8 1.7 46 18-64 70-125 (133)
61 2ecl_A Ring-box protein 2; RNF 97.9 3.7E-06 1.3E-10 61.6 1.7 44 20-63 15-75 (81)
62 2vje_A E3 ubiquitin-protein li 97.9 3.3E-06 1.1E-10 59.3 1.1 45 19-63 7-56 (64)
63 1wim_A KIAA0161 protein; ring 97.8 2.3E-06 7.8E-11 64.2 -1.0 43 19-61 4-61 (94)
64 2y1n_A E3 ubiquitin-protein li 97.8 7.2E-06 2.5E-10 77.0 2.1 45 17-63 329-378 (389)
65 2yuc_A TNF receptor-associated 97.7 2E-05 6.7E-10 56.7 3.3 53 78-136 14-67 (76)
66 2yre_A F-box only protein 30; 97.5 3.8E-05 1.3E-09 58.8 2.5 50 80-132 37-88 (100)
67 2yre_A F-box only protein 30; 97.4 9.5E-05 3.3E-09 56.5 3.1 57 54-114 39-98 (100)
68 2bay_A PRE-mRNA splicing facto 97.3 7.5E-05 2.5E-09 52.0 1.2 43 20-63 3-49 (61)
69 3dpl_R Ring-box protein 1; ubi 97.2 9E-05 3.1E-09 57.2 1.7 44 20-63 37-100 (106)
70 4a0k_B E3 ubiquitin-protein li 97.1 7.9E-05 2.7E-09 58.7 0.0 43 21-63 49-111 (117)
71 2yuc_A TNF receptor-associated 96.7 0.00024 8.3E-09 50.9 -0.2 40 96-136 2-41 (76)
72 2d9k_A FLN29 gene product; zin 96.4 0.00049 1.7E-08 49.1 0.0 50 79-134 16-65 (75)
73 3hcs_A TNF receptor-associated 96.3 0.0024 8.3E-08 52.4 3.5 51 77-133 107-158 (170)
74 3vk6_A E3 ubiquitin-protein li 96.2 0.002 6.9E-08 49.1 2.2 41 22-63 3-48 (101)
75 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0022 7.5E-08 48.1 1.4 33 19-51 2-35 (101)
76 2ct0_A Non-SMC element 1 homol 95.7 0.0055 1.9E-07 44.2 2.8 45 18-63 13-63 (74)
77 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0031 1.1E-07 58.3 1.5 47 18-64 306-373 (381)
78 1z60_A TFIIH basal transcripti 93.8 0.027 9.2E-07 38.9 1.9 39 21-59 16-59 (59)
79 2d8s_A Cellular modulator of i 93.7 0.028 9.5E-07 40.9 2.1 44 18-63 13-69 (80)
80 3hct_A TNF receptor-associated 91.8 0.048 1.6E-06 41.9 1.1 62 71-136 44-108 (118)
81 1rmd_A RAG1; V(D)J recombinati 91.5 0.14 4.7E-06 39.0 3.4 77 54-134 25-112 (116)
82 2d9k_A FLN29 gene product; zin 89.1 0.19 6.4E-06 35.3 2.2 37 97-136 3-40 (75)
83 2eod_A TNF receptor-associated 88.5 0.32 1.1E-05 32.4 3.0 52 80-136 10-62 (66)
84 2i13_A AART; DNA binding, zinc 87.2 0.56 1.9E-05 37.8 4.2 52 79-136 104-158 (190)
85 2yt9_A Zinc finger-containing 86.6 0.67 2.3E-05 32.7 3.9 52 79-136 34-90 (95)
86 3nw0_A Non-structural maintena 86.0 0.33 1.1E-05 42.3 2.3 44 19-63 179-228 (238)
87 2jne_A Hypothetical protein YF 84.2 0.36 1.2E-05 36.5 1.4 37 21-63 33-72 (101)
88 2gli_A Protein (five-finger GL 83.5 2.2 7.6E-05 32.7 5.9 55 79-135 96-154 (155)
89 2j7j_A Transcription factor II 82.5 1.2 4E-05 30.4 3.5 55 77-135 28-85 (85)
90 2jmo_A Parkin; IBR, E3 ligase, 81.0 1.2 4.1E-05 32.0 3.1 41 20-61 25-76 (80)
91 2ct7_A Ring finger protein 31; 80.8 1 3.6E-05 32.7 2.8 30 23-52 28-61 (86)
92 2dlq_A GLI-kruppel family memb 80.0 2.7 9.3E-05 30.7 5.1 106 19-136 6-119 (124)
93 1ubd_C Protein (YY1 zinc finge 79.6 0.85 2.9E-05 33.8 2.1 108 20-136 5-119 (124)
94 2dmd_A Zinc finger protein 64, 79.5 1.8 6.2E-05 30.3 3.8 51 80-136 36-89 (96)
95 2cup_A Skeletal muscle LIM-pro 79.0 0.93 3.2E-05 33.2 2.1 43 20-63 33-77 (101)
96 2xqn_T Testin, TESS; metal-bin 78.3 1.1 3.8E-05 34.2 2.4 43 20-63 30-74 (126)
97 1joc_A EEA1, early endosomal a 78.2 1.1 3.8E-05 35.0 2.4 32 20-51 69-102 (125)
98 3knv_A TNF receptor-associated 77.7 0.68 2.3E-05 36.8 1.0 28 109-136 103-131 (141)
99 1vfy_A Phosphatidylinositol-3- 77.6 1.3 4.4E-05 31.2 2.4 30 22-51 13-44 (73)
100 1z2q_A LM5-1; membrane protein 77.5 1.4 4.7E-05 31.9 2.6 33 19-51 20-54 (84)
101 2yw8_A RUN and FYVE domain-con 77.5 1.4 4.7E-05 31.8 2.6 32 20-51 19-52 (82)
102 2rpc_A Zinc finger protein ZIC 77.4 2.7 9.1E-05 32.4 4.5 79 54-136 64-147 (155)
103 2jrp_A Putative cytoplasmic pr 76.7 1.1 3.7E-05 32.7 1.8 37 21-63 3-42 (81)
104 2gmg_A Hypothetical protein PF 76.1 1.3 4.4E-05 33.9 2.1 24 35-62 68-94 (105)
105 3t7l_A Zinc finger FYVE domain 74.9 1.6 5.4E-05 32.1 2.3 32 20-51 20-53 (90)
106 2jny_A Uncharacterized BCR; st 74.5 1.5 5.1E-05 30.8 1.9 34 14-51 4-37 (67)
107 2dlq_A GLI-kruppel family memb 74.0 4.2 0.00014 29.6 4.6 75 54-136 9-91 (124)
108 1x4u_A Zinc finger, FYVE domai 73.3 1.8 6.2E-05 31.2 2.3 32 20-51 14-47 (84)
109 2kmk_A Zinc finger protein GFI 72.4 3.6 0.00012 27.6 3.6 52 78-135 27-81 (82)
110 2jr6_A UPF0434 protein NMA0874 72.3 1.8 6.2E-05 30.4 2.0 34 14-51 2-35 (68)
111 1wfk_A Zinc finger, FYVE domai 72.3 2.1 7.3E-05 31.3 2.5 33 19-51 8-42 (88)
112 3j21_g 50S ribosomal protein L 72.1 2.2 7.5E-05 28.3 2.2 34 10-43 4-37 (51)
113 2ee8_A Protein ODD-skipped-rel 71.5 5.5 0.00019 28.3 4.6 52 79-136 44-98 (106)
114 1y02_A CARP2, FYVE-ring finger 70.9 2 7E-05 33.4 2.2 41 21-61 20-66 (120)
115 1wjp_A Zinc finger protein 295 70.5 2.8 9.6E-05 30.2 2.8 51 80-136 42-94 (107)
116 2pk7_A Uncharacterized protein 69.3 1.7 5.8E-05 30.6 1.3 34 14-51 2-35 (69)
117 3m62_A Ubiquitin conjugation f 68.2 2.6 9.1E-05 43.6 2.9 63 15-79 886-954 (968)
118 1dvp_A HRS, hepatocyte growth 67.9 2.4 8E-05 36.0 2.2 32 20-51 161-194 (220)
119 2kpi_A Uncharacterized protein 67.4 2.5 8.5E-05 28.5 1.7 30 14-49 4-35 (56)
120 1weo_A Cellulose synthase, cat 66.6 2.9 9.9E-05 31.0 2.1 44 20-63 16-69 (93)
121 2xjy_A Rhombotin-2; oncoprotei 66.3 2.2 7.6E-05 32.6 1.5 44 19-63 28-77 (131)
122 2vrw_B P95VAV, VAV1, proto-onc 66.0 3.3 0.00011 37.9 2.9 38 18-55 355-395 (406)
123 2drp_A Protein (tramtrack DNA- 64.9 6.5 0.00022 25.4 3.5 45 90-136 16-65 (66)
124 3zyq_A Hepatocyte growth facto 64.1 3.2 0.00011 35.5 2.2 31 21-51 165-197 (226)
125 2jtn_A LIM domain-binding prot 63.8 4.6 0.00016 32.9 3.1 41 21-63 88-130 (182)
126 2gli_A Protein (five-finger GL 63.7 5.8 0.0002 30.2 3.6 57 78-136 65-124 (155)
127 1iml_A CRIP, cysteine rich int 63.0 3.8 0.00013 28.2 2.1 44 19-63 26-72 (76)
128 2epa_A Krueppel-like factor 10 62.8 8.6 0.00029 25.3 3.9 52 80-133 17-71 (72)
129 2csh_A Zinc finger protein 297 62.5 5.8 0.0002 28.5 3.2 52 79-136 36-90 (110)
130 1ubd_C Protein (YY1 zinc finge 62.0 7.9 0.00027 28.3 3.9 55 78-136 32-89 (124)
131 1wfh_A Zinc finger (AN1-like) 61.8 3.9 0.00013 28.4 1.9 42 19-61 14-56 (64)
132 1wfe_A Riken cDNA 2310008M20 p 60.0 8 0.00027 28.3 3.5 41 16-57 21-64 (86)
133 2js4_A UPF0434 protein BB2007; 59.8 3.7 0.00013 28.9 1.6 34 14-51 2-35 (70)
134 2zet_C Melanophilin; complex, 59.5 4.5 0.00015 32.7 2.2 42 19-60 67-116 (153)
135 2jp9_A Wilms tumor 1; DNA bind 59.0 10 0.00034 27.3 4.0 51 78-132 64-117 (119)
136 3lqh_A Histone-lysine N-methyl 58.7 9.4 0.00032 31.7 4.1 42 22-63 4-65 (183)
137 2hf1_A Tetraacyldisaccharide-1 58.4 3.4 0.00012 28.9 1.2 33 14-50 2-34 (68)
138 2wbs_A Krueppel-like factor 4; 58.4 11 0.00039 25.5 4.0 49 80-132 35-86 (89)
139 2dmi_A Teashirt homolog 3; zin 58.2 11 0.00037 27.2 4.0 39 96-136 65-105 (115)
140 1tf6_A Protein (transcription 57.6 13 0.00044 29.4 4.7 79 54-136 44-131 (190)
141 2dlk_A Novel protein; ZF-C2H2 57.3 11 0.00039 25.0 3.8 54 81-136 8-65 (79)
142 1x4s_A Protein FON, zinc finge 57.1 4.8 0.00016 27.5 1.7 46 14-62 5-52 (59)
143 1a1h_A QGSR zinc finger peptid 56.9 13 0.00045 25.2 4.2 52 78-135 32-86 (90)
144 1zbd_B Rabphilin-3A; G protein 56.4 5.1 0.00018 31.7 2.0 34 19-52 54-90 (134)
145 2rpc_A Zinc finger protein ZIC 56.3 17 0.00056 27.7 5.0 48 89-136 67-117 (155)
146 2jrp_A Putative cytoplasmic pr 56.3 8.2 0.00028 28.0 2.9 55 8-63 3-62 (81)
147 1wfp_A Zinc finger (AN1-like) 55.3 6.1 0.00021 28.2 2.0 43 19-62 24-67 (74)
148 1wg2_A Zinc finger (AN1-like) 54.9 13 0.00045 25.7 3.7 44 18-62 13-57 (64)
149 1m3v_A FLIN4, fusion of the LI 54.8 4.4 0.00015 30.8 1.4 41 21-63 33-80 (122)
150 2zjr_Z 50S ribosomal protein L 54.5 6.7 0.00023 26.7 2.1 25 17-42 27-51 (60)
151 2j9u_B VPS36, vacuolar protein 53.8 6.4 0.00022 28.2 1.9 14 14-27 11-24 (76)
152 2ebt_A Krueppel-like factor 5; 53.6 17 0.00057 25.2 4.3 52 79-134 44-98 (100)
153 2eod_A TNF receptor-associated 53.6 6.3 0.00022 25.7 1.9 31 103-136 3-33 (66)
154 1rut_X Flinc4, fusion protein 52.7 3.8 0.00013 33.6 0.7 43 19-63 31-80 (188)
155 2dar_A PDZ and LIM domain prot 52.3 9.4 0.00032 27.2 2.8 10 22-31 27-36 (90)
156 1llm_C Chimera of ZIF23-GCN4; 51.8 0.6 2E-05 32.8 -3.9 53 78-136 29-83 (88)
157 1sp2_A SP1F2; zinc finger, tra 50.4 16 0.00055 19.3 3.0 26 109-134 1-27 (31)
158 2d8z_A Four and A half LIM dom 50.3 8.1 0.00028 25.9 2.0 30 21-51 32-61 (70)
159 1x68_A FHL5 protein; four-and- 50.1 11 0.00037 25.9 2.7 37 20-57 35-73 (76)
160 2i13_A AART; DNA binding, zinc 49.6 12 0.00042 29.5 3.4 23 109-133 160-183 (190)
161 2rgt_A Fusion of LIM/homeobox 49.3 7.1 0.00024 31.3 1.9 43 19-63 32-76 (169)
162 2ct1_A Transcriptional repress 49.3 16 0.00053 24.4 3.4 45 90-136 21-70 (77)
163 3uk3_C Zinc finger protein 217 48.3 12 0.00043 23.0 2.6 26 109-136 31-57 (57)
164 2eln_A Zinc finger protein 406 47.7 12 0.00042 22.4 2.3 26 109-134 8-34 (38)
165 2lt7_A Transcriptional regulat 47.7 11 0.00039 28.9 2.7 51 80-136 50-103 (133)
166 1x3c_A Zinc finger protein 292 46.2 13 0.00045 26.4 2.6 28 109-136 26-54 (73)
167 1vq8_Z 50S ribosomal protein L 45.9 8.6 0.00029 27.9 1.6 15 17-31 24-38 (83)
168 2d8x_A Protein pinch; LIM doma 45.3 9 0.00031 25.7 1.6 11 21-31 32-42 (70)
169 2ko5_A Ring finger protein Z; 45.2 8.1 0.00028 28.9 1.4 49 13-64 21-73 (99)
170 3i2d_A E3 SUMO-protein ligase 45.2 12 0.0004 34.7 2.8 60 19-79 248-316 (371)
171 1x61_A Thyroid receptor intera 45.0 6.9 0.00024 26.4 1.0 30 21-51 34-63 (72)
172 1nyp_A Pinch protein; LIM doma 44.6 9.4 0.00032 25.3 1.6 10 22-31 33-42 (66)
173 1wfl_A Zinc finger protein 216 44.6 11 0.00039 26.8 2.0 41 20-61 25-66 (74)
174 1zw8_A Zinc-responsive transcr 44.4 21 0.00072 23.9 3.4 53 81-135 2-64 (64)
175 3pwf_A Rubrerythrin; non heme 44.4 9.8 0.00034 31.1 2.0 28 32-63 136-164 (170)
176 1wyh_A SLIM 2, skeletal muscle 44.3 12 0.00041 25.1 2.2 30 21-51 34-63 (72)
177 2jp9_A Wilms tumor 1; DNA bind 43.9 30 0.001 24.6 4.5 77 54-136 8-91 (119)
178 2cur_A Skeletal muscle LIM-pro 43.3 9.5 0.00033 25.5 1.5 30 21-51 32-61 (69)
179 1wff_A Riken cDNA 2810002D23 p 42.9 12 0.0004 27.4 1.9 40 20-61 25-67 (85)
180 2kdx_A HYPA, hydrogenase/ureas 42.7 14 0.00046 28.2 2.4 29 32-62 71-100 (119)
181 2cu8_A Cysteine-rich protein 2 42.5 15 0.00051 25.1 2.4 30 21-51 37-67 (76)
182 1zfd_A SWI5; DNA binding motif 42.3 24 0.00082 18.7 2.9 26 109-134 2-28 (32)
183 2jne_A Hypothetical protein YF 42.2 7.1 0.00024 29.3 0.7 37 10-50 51-89 (101)
184 3mpx_A FYVE, rhogef and PH dom 41.8 5.5 0.00019 36.6 0.0 32 20-51 375-408 (434)
185 2k5r_A Uncharacterized protein 41.4 12 0.00041 28.0 1.8 19 14-32 2-20 (97)
186 2ctd_A Zinc finger protein 512 41.3 23 0.00078 25.3 3.4 55 76-136 30-87 (96)
187 1x4k_A Skeletal muscle LIM-pro 40.9 12 0.00042 25.1 1.8 30 21-51 34-63 (72)
188 1wd2_A Ariadne-1 protein homol 40.7 12 0.0004 25.3 1.6 37 20-62 6-44 (60)
189 1tf6_A Protein (transcription 40.7 25 0.00087 27.6 3.9 55 80-136 104-161 (190)
190 1x5w_A Zinc finger protein 64, 40.6 26 0.00088 22.7 3.4 45 90-136 15-62 (70)
191 4fo9_A E3 SUMO-protein ligase 39.3 17 0.00057 33.5 2.8 58 20-78 215-281 (360)
192 1x4w_A Hypothetical protein FL 39.0 11 0.00039 26.3 1.3 41 19-60 14-58 (67)
193 1x63_A Skeletal muscle LIM-pro 38.4 13 0.00046 25.6 1.7 10 22-31 17-26 (82)
194 1lko_A Rubrerythrin all-iron(I 38.4 11 0.00038 31.2 1.4 26 34-62 155-181 (191)
195 4ayb_P DNA-directed RNA polyme 38.2 15 0.0005 23.9 1.6 29 34-62 3-33 (48)
196 3h0g_L DNA-directed RNA polyme 38.1 15 0.00051 25.3 1.8 10 54-63 40-49 (63)
197 1x4v_A Hypothetical protein LO 37.9 13 0.00046 25.5 1.5 28 19-47 11-40 (63)
198 2k16_A Transcription initiatio 37.4 16 0.00054 25.3 1.9 50 14-63 12-70 (75)
199 3ky9_A Proto-oncogene VAV; cal 36.3 18 0.00062 34.8 2.8 41 18-61 527-570 (587)
200 2fiy_A Protein FDHE homolog; F 36.0 16 0.00056 32.7 2.2 43 18-61 180-231 (309)
201 1a7i_A QCRP2 (LIM1); LIM domai 35.8 11 0.00036 26.2 0.7 41 19-60 33-75 (81)
202 1b8t_A Protein (CRP1); LIM dom 35.5 15 0.00053 29.9 1.8 42 21-63 143-186 (192)
203 2vy4_A U11/U12 small nuclear r 35.4 11 0.00039 23.0 0.7 28 79-109 4-31 (37)
204 2ab3_A ZNF29; zinc finger prot 35.4 25 0.00087 17.8 2.2 24 110-133 2-26 (29)
205 2adr_A ADR1; transcription reg 35.0 46 0.0016 20.5 3.8 45 90-136 8-55 (60)
206 1x6e_A Zinc finger protein 24; 34.5 35 0.0012 22.2 3.3 44 90-135 20-66 (72)
207 2lcq_A Putative toxin VAPC6; P 33.9 15 0.00051 29.3 1.5 28 34-63 132-159 (165)
208 2d9h_A Zinc finger protein 692 33.6 29 0.00099 22.9 2.8 45 90-136 13-63 (78)
209 1x4l_A Skeletal muscle LIM-pro 32.9 17 0.00058 24.4 1.4 31 21-52 36-66 (72)
210 2csz_A Synaptotagmin-like prot 32.6 21 0.00072 25.5 1.9 35 18-52 23-60 (76)
211 3v2d_5 50S ribosomal protein L 32.3 22 0.00075 24.1 1.9 25 17-42 27-51 (60)
212 1x3h_A Leupaxin; paxillin fami 32.2 32 0.0011 23.4 2.8 11 22-32 17-27 (80)
213 2cor_A Pinch protein; LIM doma 32.0 34 0.0012 23.5 3.0 10 22-31 17-26 (79)
214 2dj7_A Actin-binding LIM prote 31.2 26 0.00087 24.4 2.2 11 21-31 43-53 (80)
215 1vd4_A Transcription initiatio 31.1 26 0.00089 22.5 2.1 10 54-63 41-50 (62)
216 1bbo_A Human enhancer-binding 30.3 62 0.0021 19.6 3.8 45 90-136 7-54 (57)
217 2d8v_A Zinc finger FYVE domain 30.0 20 0.0007 24.9 1.4 32 18-52 6-38 (67)
218 2egq_A FHL1 protein; LIM domai 29.9 16 0.00054 24.9 0.8 11 22-32 17-27 (77)
219 1wys_A Riken cDNA 2310008M20 p 29.5 25 0.00085 25.0 1.8 36 21-57 15-53 (75)
220 1ncs_A Peptide M30F, transcrip 29.3 35 0.0012 20.4 2.4 26 108-133 16-42 (47)
221 2gqj_A Zinc finger protein KIA 28.9 40 0.0014 23.6 3.0 54 77-136 21-79 (98)
222 1bhi_A CRE-BP1, ATF-2; CRE bin 28.8 35 0.0012 18.8 2.2 26 109-134 5-31 (38)
223 1vyx_A ORF K3, K3RING; zinc-bi 28.7 25 0.00084 23.4 1.6 44 19-63 5-58 (60)
224 3mjh_B Early endosome antigen 28.4 37 0.0013 20.4 2.2 24 111-136 6-30 (34)
225 2ehe_A Four and A half LIM dom 28.1 29 0.00099 23.8 2.0 30 21-51 44-73 (82)
226 2cot_A Zinc finger protein 435 27.9 67 0.0023 21.0 3.9 45 90-136 24-71 (77)
227 1x62_A C-terminal LIM domain p 27.6 16 0.00056 25.2 0.6 16 18-33 13-28 (79)
228 3qt1_I DNA-directed RNA polyme 27.0 26 0.0009 27.5 1.7 16 18-33 22-37 (133)
229 1twf_I B12.6, DNA-directed RNA 27.0 25 0.00085 27.0 1.6 15 19-33 3-17 (122)
230 2cuq_A Four and A half LIM dom 26.9 28 0.00095 23.8 1.7 23 41-63 2-26 (80)
231 2iyb_E Testin, TESS, TES; LIM 26.6 21 0.00073 23.5 1.0 11 21-31 33-43 (65)
232 1b8t_A Protein (CRP1); LIM dom 26.2 21 0.00072 29.1 1.1 42 19-61 33-76 (192)
233 1x64_A Alpha-actinin-2 associa 26.1 27 0.00093 24.6 1.6 42 16-63 21-62 (89)
234 2lv9_A Histone-lysine N-methyl 25.3 55 0.0019 23.9 3.2 42 18-60 26-75 (98)
235 2co8_A NEDD9 interacting prote 25.2 48 0.0017 22.9 2.8 9 22-30 17-25 (82)
236 2lri_C Autoimmune regulator; Z 25.0 58 0.002 22.2 3.0 45 16-62 8-60 (66)
237 1twf_L ABC10-alpha, DNA-direct 24.6 36 0.0012 23.8 1.9 7 54-60 47-53 (70)
238 3h0g_I DNA-directed RNA polyme 24.5 31 0.001 26.1 1.7 14 20-33 4-17 (113)
239 3vhs_A ATPase wrnip1; zinc fin 24.4 29 0.00098 19.6 1.1 17 90-106 12-28 (29)
240 2lv2_A Insulinoma-associated p 24.2 76 0.0026 22.3 3.7 45 90-136 34-81 (85)
241 2l7x_A Envelope glycoprotein; 24.0 35 0.0012 24.0 1.7 36 94-133 16-51 (77)
242 1yuz_A Nigerythrin; rubrythrin 23.7 33 0.0011 28.6 1.9 28 33-63 170-197 (202)
243 2cr8_A MDM4 protein; ZF-ranbp 23.7 40 0.0014 22.2 1.8 31 13-51 4-34 (53)
244 1wig_A KIAA1808 protein; LIM d 23.5 27 0.00092 23.7 1.1 31 21-52 32-63 (73)
245 1va1_A Transcription factor SP 22.8 58 0.002 17.9 2.4 25 109-133 7-32 (37)
246 2c6a_A Ubiquitin-protein ligas 22.5 34 0.0011 22.1 1.3 30 13-50 6-35 (46)
247 1mm2_A MI2-beta; PHD, zinc fin 22.3 83 0.0028 20.8 3.4 41 19-61 8-56 (61)
248 1j2o_A FLIN2, fusion of rhombo 22.2 45 0.0015 24.6 2.2 31 21-52 31-63 (114)
249 1flk_A TNF receptor associated 22.2 20 0.00069 30.2 0.2 26 80-105 9-39 (228)
250 2yqq_A Zinc finger HIT domain- 21.8 40 0.0014 22.5 1.6 28 22-52 14-42 (56)
251 1g47_A Pinch protein; LIM doma 21.8 27 0.00091 23.6 0.8 10 22-31 13-22 (77)
252 1dl6_A Transcription factor II 21.6 51 0.0017 21.9 2.1 33 14-51 5-39 (58)
253 1wjv_A Cell growth regulating 21.4 16 0.00054 26.3 -0.5 40 89-130 15-55 (79)
254 2jvx_A NF-kappa-B essential mo 21.4 34 0.0012 19.6 1.0 14 20-33 3-16 (28)
255 1pft_A TFIIB, PFTFIIBN; N-term 21.1 37 0.0012 21.5 1.3 26 20-50 5-32 (50)
256 6rxn_A Rubredoxin; electron tr 20.4 33 0.0011 21.9 0.9 15 15-29 25-39 (46)
257 2cs3_A Protein C14ORF4, MY039 20.0 53 0.0018 23.8 2.0 34 18-51 13-48 (93)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=99.93 E-value=2.9e-27 Score=203.65 Aligned_cols=145 Identities=19% Similarity=0.431 Sum_probs=82.9
Q ss_pred hhhcceecCCCCCCCceeeeccchhhhhhcccCCceecCCCCC--CCCccChhhHHHHHhcccC-cceeeCCeEEEeecc
Q psy12127 75 IFTKLELPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLKCPMHA--CPWTNSVLHLSEHLNQVHH-LHLLKGNGVNIEISN 151 (263)
Q Consensus 75 ~v~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~--C~~~g~~~~L~~Hl~~~H~-~~~~~g~~~~~~i~n 151 (263)
+++++++||+|+.+||++.++|.++.+||++|+|+|+.||.++ |+|+|+.++|..|++.+|+ +.+.+|.++.+.
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~--- 77 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFL--- 77 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEE---
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEE---
Confidence 4788999999999999999999999999999999999999965 9999999999999999998 788999998876
Q ss_pred cccccccCcccceeEEEEEeecCceEEEEEeccC----Ce-EEEE--EEee-eCCCCceEEEEEEeeccccccCCceeee
Q psy12127 152 FKTKVSESETKVHKYVILMNCYSQYFICKLCLYK----KV-LTMS--FVQI-SNSSPFHFGVFVNIASNFKSMKGIVPIH 223 (263)
Q Consensus 152 f~~~~n~~~~~~~~~~~l~~~~g~~F~l~~~~~~----~~-~~v~--~v~~-~~~~~~~y~~~l~~~~~~~~~~g~~~~~ 223 (263)
++++| ++++.+|+++++++|++|+|++++.+ .. ++++ +++. +.+++|.|++++.++.+..+|++.+||.
T Consensus 78 -~~~~~--l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~ 154 (193)
T 2a25_A 78 -ATDIN--LPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 154 (193)
T ss_dssp -EECCC------CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEET
T ss_pred -ecccc--cccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEeh
Confidence 56666 77888999999999999999988754 22 2333 3443 3357899999998766666777777655
Q ss_pred ee
Q psy12127 224 YA 225 (263)
Q Consensus 224 ~q 225 (263)
.+
T Consensus 155 ~e 156 (193)
T 2a25_A 155 HE 156 (193)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=168.74 Aligned_cols=117 Identities=23% Similarity=0.497 Sum_probs=106.2
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCccc-ccccHHHHHhhhcceecCCCCC
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDYS-WQRNVALERIFTKLELPCRNFR 87 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~~-~~rn~~le~~v~~l~v~C~~~~ 87 (263)
.+.+.+.|.||||++++.+|+. + .|||+||..|+.++ ..||.||.++... ..++.+++++++++.++|+|.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~- 88 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQ-T-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE- 88 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEE-C-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCST-
T ss_pred ccCCCCCCCCCCCChhhcCcEE-C-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCC-
Confidence 4678899999999999999974 4 58999999999885 2899999998753 568999999999999999984
Q ss_pred CCceeeeccchhhhhhcccCCceecCCCCCCCCccChhhHHHHHhcccC
Q psy12127 88 FGCKVYLPKAKRDKHEDKCKFRQLKCPMHACPWTNSVLHLSEHLNQVHH 136 (263)
Q Consensus 88 ~GC~~~~~~~~~~~He~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~H~ 136 (263)
||++.+++.++++|+++|+|+++.|| +|++.+.+.+|..|+...+.
T Consensus 89 -GC~~~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~ 134 (170)
T 3hcs_A 89 -GCLHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCP 134 (170)
T ss_dssp -TCCCEEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCT
T ss_pred -CCCceecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCC
Confidence 99999999999999999999999997 89999999999999987776
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.66 E-value=4.5e-17 Score=128.83 Aligned_cols=93 Identities=24% Similarity=0.485 Sum_probs=81.0
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----C-CCCCCccCCccc-ccccHHHHHhhhcceecCCCCC
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----L-KCPFCRITIDYS-WQRNVALERIFTKLELPCRNFR 87 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~-~CP~Cr~~~~~~-~~rn~~le~~v~~l~v~C~~~~ 87 (263)
.+.+.+.+.||||++++..|+.. .|||+||..|+.++ . .||.||.++... ..++..++++++++++.|+|
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n-- 87 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQT--PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN-- 87 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEEC--TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--
T ss_pred ccCCCCCCCCCcCChhhcCeEEC--CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--
Confidence 46788899999999999999753 69999999999885 3 899999998753 55789999999999999997
Q ss_pred CCceeeeccchhhhhhcccCCce
Q psy12127 88 FGCKVYLPKAKRDKHEDKCKFRQ 110 (263)
Q Consensus 88 ~GC~~~~~~~~~~~He~~C~~~~ 110 (263)
.||+|.+++.++++|+++|.+..
T Consensus 88 ~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 88 EGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp TTCCCEEEGGGSGGGTSSSCC--
T ss_pred CCCCCEEeeHHHHHHHHHchhhh
Confidence 59999999999999999988643
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.62 E-value=9.6e-17 Score=126.25 Aligned_cols=92 Identities=21% Similarity=0.378 Sum_probs=79.8
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCccc--ccccHHHHHhhhcceecCCCC
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDYS--WQRNVALERIFTKLELPCRNF 86 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~~--~~rn~~le~~v~~l~v~C~~~ 86 (263)
.+++.+.+.||||++++.+|+. ..|||+||..|+.++ ..||.||.++... ...+..++++++++.+.|+|.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~ 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVE--TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST
T ss_pred HHhccCCCCCCCCCcHhcCcEE--cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC
Confidence 3556778999999999999975 469999999999874 3799999998743 234788999999999999996
Q ss_pred CCCceeeeccchhhhhhcccCCc
Q psy12127 87 RFGCKVYLPKAKRDKHEDKCKFR 109 (263)
Q Consensus 87 ~~GC~~~~~~~~~~~He~~C~~~ 109 (263)
||++.+.+.++.+|+++|.++
T Consensus 95 --gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 --DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp --TCCCEEEHHHHHHHHHTSCCC
T ss_pred --CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 5
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.62 E-value=6.3e-17 Score=132.44 Aligned_cols=91 Identities=24% Similarity=0.438 Sum_probs=78.3
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCcc----------cccccHHHHHhhhc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDY----------SWQRNVALERIFTK 78 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~----------~~~rn~~le~~v~~ 78 (263)
.+.+.+.+.||||++++..|+. ..|||+||..|+.++ ..||.||.++.. ...++.++++++.+
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~--~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQ--AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred hccCCcCcCCCCCChhhcCcEE--CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 3678899999999999999974 469999999999985 279999997521 14478999999999
Q ss_pred ceecCCCCCCCceeeeccchhhh-hhcccCC
Q psy12127 79 LELPCRNFRFGCKVYLPKAKRDK-HEDKCKF 108 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~~~~~~-He~~C~~ 108 (263)
+.++|+| .||.|.+.+.++++ |+..|+-
T Consensus 103 L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 103 LPAVCPS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp SEEECCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred cccccCC--CCCCCEeEHHHHHHHHHHHhHH
Confidence 9999999 59999999999998 9998863
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.06 E-value=5.1e-11 Score=89.36 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=58.0
Q ss_pred chhcCCceeeeccccCccccccccccCCCceecccccccc------CCCCCCccCCc-c-cccccHHHHHhhhcceecCC
Q psy12127 13 CKELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL------LKCPFCRITID-Y-SWQRNVALERIFTKLELPCR 84 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l------~~CP~Cr~~~~-~-~~~rn~~le~~v~~l~v~C~ 84 (263)
..+++.+.+.||||++++.+|+.. +.|||+||..|+.++ ..||.||.++. . ....|..++++++.+.-.-.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred ccccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 356788999999999999999854 449999999999874 38999999973 2 36779999999988765544
Q ss_pred C
Q psy12127 85 N 85 (263)
Q Consensus 85 ~ 85 (263)
+
T Consensus 85 ~ 85 (92)
T 3ztg_A 85 Y 85 (92)
T ss_dssp C
T ss_pred H
Confidence 3
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=2.8e-11 Score=88.11 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=53.8
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCccc-ccccHHHHHhhhcce
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDYS-WQRNVALERIFTKLE 80 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~~-~~rn~~le~~v~~l~ 80 (263)
++++.+.+.||||+++|.+|+.. .|||+||..|+.++ ..||.||.++... ..+|..|+++++.+.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CcCCcccCCCCCccccccCCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 46788999999999999999753 59999999999874 3699999998643 567888888887654
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.96 E-value=7.7e-11 Score=90.29 Aligned_cols=63 Identities=30% Similarity=0.635 Sum_probs=49.9
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCccc-ccccHHHHHhhh
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDYS-WQRNVALERIFT 77 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~~-~~rn~~le~~v~ 77 (263)
.+.+.+.+.|+||++.+..|+. +..|||.||..|+.++ ..||.||.++... ..+++.++.+++
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARL-CPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred cccCCCCCCCccCCccccCccc-cCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 4667889999999999999974 4679999999999885 3799999998643 445655555544
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.2e-10 Score=88.57 Aligned_cols=66 Identities=23% Similarity=0.636 Sum_probs=54.2
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCccc-ccccHHHHHhhhcce
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDYS-WQRNVALERIFTKLE 80 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~~-~~rn~~le~~v~~l~ 80 (263)
.+++.+.+.|+||++.+..|+.. ..|||.||..|+.++ ..||.||.++... ..+|..++++++.++
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMII-PQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEE-CCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 34567789999999999999753 469999999999885 3799999998743 667899999887654
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=6.5e-10 Score=81.47 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=50.4
Q ss_pred chhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCcccccccHHHHHhhhc
Q psy12127 13 CKELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDYSWQRNVALERIFTK 78 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~~~~rn~~le~~v~~ 78 (263)
.+++..+.+.|+||++.+..|+. ..|||+||..|+.++ ..||.||.++......+..+...+.+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVV--TKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQK 75 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEE--CTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHSS
T ss_pred CcccCCCCCCCcCCCchhcCeeE--ccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHHh
Confidence 35667788999999999999975 469999999999885 47999999986435556666555544
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.90 E-value=2.1e-10 Score=83.22 Aligned_cols=61 Identities=28% Similarity=0.648 Sum_probs=47.9
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----------CCCCCCccCCccc-ccccHHHHHhh
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----------LKCPFCRITIDYS-WQRNVALERIF 76 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----------~~CP~Cr~~~~~~-~~rn~~le~~v 76 (263)
.+++.+.+.||||++.+..|+.. .|||.||..|+.++ ..||.||.++... ..+|..+++++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSL--DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCC--SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred HhhcccCCCCcCCCcccCCeeEC--CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 46788999999999999999753 69999999999863 2699999998642 44565555443
No 12
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=4.3e-10 Score=88.35 Aligned_cols=65 Identities=17% Similarity=0.448 Sum_probs=53.5
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc--CCCCCCccCCccc-ccccHHHHHhhhcc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRITIDYS-WQRNVALERIFTKL 79 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~~~~~-~~rn~~le~~v~~l 79 (263)
.+.+.+.+.||||++++..|+.. ..|||+||..|+.++ ..||.||.++... ..+|..+.++++.+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~-~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCL-GGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCC-CSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEe-CCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence 45677899999999999999853 269999999999987 4799999998643 56688888888754
No 13
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.89 E-value=5.1e-10 Score=83.48 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=53.6
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCccc-ccccHHHHHhhhcc
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDYS-WQRNVALERIFTKL 79 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~~-~~rn~~le~~v~~l 79 (263)
+++.+.|.||||+++|.+||.. .|||+||+.|+.++ ..||.|+.++... ..+|.+|+++++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~--~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRL--PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEEC--TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeEC--CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 4577899999999999999864 48999999999885 4899999998753 67799999988765
No 14
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.85 E-value=5.5e-10 Score=86.35 Aligned_cols=66 Identities=21% Similarity=0.416 Sum_probs=53.2
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCcc-----cccccHHHHHhhhcce
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDY-----SWQRNVALERIFTKLE 80 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~-----~~~rn~~le~~v~~l~ 80 (263)
.+++.+.+.||||++.+..|+.. ..|||+||..|+.++ ..||.||..+.. ....|..++++++.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTI-IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEE-TTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hhccCCcCCCccCChHHhCcCEe-CCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 35678899999999999999753 469999999999885 489999998863 2356788888887643
No 15
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.83 E-value=5.9e-10 Score=88.22 Aligned_cols=64 Identities=30% Similarity=0.598 Sum_probs=52.7
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCcc--cccccHHHHHhhhcce
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDY--SWQRNVALERIFTKLE 80 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~--~~~rn~~le~~v~~l~ 80 (263)
+.+.+.+.||||++++..|+.. .|||+||..|+.++ ..||.||.++.. ...+|..++++++.+.
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred HhCccCCCCCcCChHHcCcEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 4567789999999999999864 69999999999874 289999999874 2567889988887643
No 16
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.83 E-value=9.6e-10 Score=84.61 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=54.8
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCccc-ccccHHHHHhhhcce
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDYS-WQRNVALERIFTKLE 80 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~~-~~rn~~le~~v~~l~ 80 (263)
..++.+.|.||||+++|.+||.. .|||+||+.|+.++ ..||.|+.++... ..+|..|+++++...
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~--~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRL--PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEE--TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeEC--CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 35677899999999999999864 48999999999885 3899999998753 678999999887654
No 17
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.83 E-value=1.1e-09 Score=83.96 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=54.8
Q ss_pred hcCCceeeeccccCccccccccccCCC-ceecccccccc----CCCCCCccCCccc-ccccHHHHHhhhccee
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCG-NLVCTSCAARL----LKCPFCRITIDYS-WQRNVALERIFTKLEL 81 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CG-H~~C~~C~~~l----~~CP~Cr~~~~~~-~~rn~~le~~v~~l~v 81 (263)
.++.+.|.||||+++|++||.. .|| |+||+.|+.++ ..||.|+.++... ..+|..|+++|+...-
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~--~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVL--PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEEC--TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeEC--CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 4567899999999999999863 579 99999999885 3799999998753 6789999999987654
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=8.2e-10 Score=80.74 Aligned_cols=61 Identities=26% Similarity=0.587 Sum_probs=48.1
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----------CCCCCCccCCccc-ccccHHHHHhh
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----------LKCPFCRITIDYS-WQRNVALERIF 76 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----------~~CP~Cr~~~~~~-~~rn~~le~~v 76 (263)
.+++.+.+.|+||++.+..|+.. .|||.||..|+.++ ..||.||..+... ..+|..+++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSL--DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCC--SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeC--CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 46678899999999999999753 69999999999873 3799999998743 44565555544
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.5e-09 Score=77.84 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=42.7
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
.+++.+.+.|+||++.+.+|+.. ..|||.||..|+.++ ..||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTI-TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEEC-SSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEE-CCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 45678899999999999999753 469999999999885 489999999863
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.79 E-value=8.4e-10 Score=89.16 Aligned_cols=48 Identities=25% Similarity=0.704 Sum_probs=40.7
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
+.+.+.+.||||++.+..|+.. .|||.||..|+.++ ..||.||.++..
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTL--NCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEE--TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred HhccccCCCcccCcccCCceEC--CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4456778999999999999863 69999999999885 379999999863
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=5.9e-10 Score=81.54 Aligned_cols=61 Identities=26% Similarity=0.664 Sum_probs=48.1
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----------CCCCCCccCCccc-ccccHHHHHhh
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----------LKCPFCRITIDYS-WQRNVALERIF 76 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----------~~CP~Cr~~~~~~-~~rn~~le~~v 76 (263)
.+++.+.+.|+||++.+..|+. ..|||.||..|+.++ ..||.||.++... ..+|..+++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHhCccCCCCcCCChhhCccee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 4667889999999999999974 359999999999863 3799999998643 45566655544
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=75.97 Aligned_cols=48 Identities=27% Similarity=0.778 Sum_probs=41.7
Q ss_pred hhcCCceeeeccccCccccccccccCCCceeccccccccC-------CCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLL-------KCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l~-------~CP~Cr~~~~ 63 (263)
.+++.+.+.|+||++.+..|+.. .|||.||..|+.++. .||.||.++.
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 45678899999999999999764 699999999998852 7999999886
No 23
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.75 E-value=1.6e-09 Score=89.74 Aligned_cols=67 Identities=22% Similarity=0.516 Sum_probs=53.2
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCcc--cccccHHHHHhhhccee
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDY--SWQRNVALERIFTKLEL 81 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~--~~~rn~~le~~v~~l~v 81 (263)
.+++.+.+.||||++.+..|+.. ..|||.||..|+.++ ..||.||.++.. ....|..+++++..+.-
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTT-KECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEE-TTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhhCCCCCCCcccChHhhCcCEe-CCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 34567888999999999999753 469999999999885 269999999853 25678899999987754
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.75 E-value=2.9e-09 Score=76.84 Aligned_cols=49 Identities=22% Similarity=0.542 Sum_probs=41.7
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc------CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL------LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l------~~CP~Cr~~~~ 63 (263)
.+++.+.+.|+||++++..|+.. +.|||+||..|+.++ ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 56788999999999999999863 449999999999885 27999999764
No 25
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.8e-09 Score=80.77 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=52.0
Q ss_pred cCCceeeeccccCccccccccccCCCceecccccccc---C-------CCCC--CccC-Ccc-cccccHHHHHhhhcce
Q psy12127 16 LIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL---L-------KCPF--CRIT-IDY-SWQRNVALERIFTKLE 80 (263)
Q Consensus 16 ~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l---~-------~CP~--Cr~~-~~~-~~~rn~~le~~v~~l~ 80 (263)
...+.|.||||+++|.+||.. +.|||+||..|+.++ . .||. |+.. +.. ...+|.+|+++|+.++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~-~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKN-KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEE-SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEc-CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 457889999999999999853 348999999999874 1 8999 9866 543 3778999999998764
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.73 E-value=2e-09 Score=88.54 Aligned_cols=64 Identities=23% Similarity=0.473 Sum_probs=53.2
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCccc--ccccHHHHHhhhcce
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDYS--WQRNVALERIFTKLE 80 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~~--~~rn~~le~~v~~l~ 80 (263)
+.+.+.+.|+||++++..|+. ..|||+||..|+.++ ..||.||.++... ..+|..++++++.+.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred HhCccCCEeecCChhhcCCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 446678999999999999986 469999999999885 2799999998743 567999999888654
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=3.9e-09 Score=74.30 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=41.6
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~ 63 (263)
.+.+.+.+.||||++.+..|+. ..|||.||..|+.++ ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4567889999999999999976 479999999999874 37999999886
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.67 E-value=5.5e-09 Score=81.45 Aligned_cols=64 Identities=33% Similarity=0.602 Sum_probs=49.2
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCcc--------cccccHHHHHhhhcc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITIDY--------SWQRNVALERIFTKL 79 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~--------~~~rn~~le~~v~~l 79 (263)
.+.+.+.+.|+||++.+..|+.. .|||+||..|+.++ ..||.||..+.. ....|..+..++.++
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred ccCCCCCCCCccCCcccCceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 34566789999999999999864 69999999999885 279999998752 133456666666543
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=1e-08 Score=70.21 Aligned_cols=44 Identities=18% Similarity=0.532 Sum_probs=38.4
Q ss_pred CceeeeccccCccccccccccCCCceecccccccc-CCCCCCccCCc
Q psy12127 18 ASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-LKCPFCRITID 63 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~~~ 63 (263)
.+.+.|+||++.+..|+. ..|||+||..|+.+. ..||.||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~--l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL--LPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC--STTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEE--cCCCCcccHHHHccCCCCCCcCCcEee
Confidence 567899999999999975 369999999999876 48999999876
No 30
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=1.6e-09 Score=83.65 Aligned_cols=61 Identities=25% Similarity=0.698 Sum_probs=45.6
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc----C---CCCCCccCCccc-ccccHHHHHhhh
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----L---KCPFCRITIDYS-WQRNVALERIFT 77 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~---~CP~Cr~~~~~~-~~rn~~le~~v~ 77 (263)
+.+.+.+.|+||++.+..|+. ..|||.||..|+.++ . .||.||.++... ..++..++++++
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~ 84 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVE 84 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCB--CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHH
T ss_pred HhccCCCCCcccChhhcCeEE--CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHH
Confidence 456678899999999999975 369999999999874 1 799999988642 333443333333
No 31
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.3e-08 Score=89.82 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=54.1
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc----C-CCCCCccCCccc-ccccHHHHHhhhccee
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----L-KCPFCRITIDYS-WQRNVALERIFTKLEL 81 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~-~CP~Cr~~~~~~-~~rn~~le~~v~~l~v 81 (263)
.++.+.+.||||+++|.+||. ..|||+||..|+.++ + .||.|+.++... ..+|..|+++++...-
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~--~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCI--TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEE--CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeE--CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 356789999999999999985 358999999999874 2 499999998753 7789999999987653
No 32
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.2e-08 Score=72.82 Aligned_cols=48 Identities=23% Similarity=0.659 Sum_probs=40.7
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.+...+.+.|+||++.+..|+.. .|||.||..|+.++ ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~--~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSL--PCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEE--TTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cccCCCCCCCccCCcccCCCEEc--cCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 34556788999999999999754 59999999999885 37999999886
No 33
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=9.7e-09 Score=75.72 Aligned_cols=48 Identities=27% Similarity=0.837 Sum_probs=41.3
Q ss_pred hhcCCceeeeccccCcccc----ccccccCCCceecccccccc-------CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDR----GITSCQTCGNLVCTSCAARL-------LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~----Pv~qC~~CGH~~C~~C~~~l-------~~CP~Cr~~~~ 63 (263)
.+.+.+.+.|+||++.+.. |+.. .|||.||..|+.++ ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLL--HCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEEC--CCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 5678889999999999998 8653 69999999999885 37999999875
No 34
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.4e-08 Score=71.38 Aligned_cols=50 Identities=22% Similarity=0.630 Sum_probs=40.9
Q ss_pred hhcCCceeeeccccCccccccc-----cccCCCceecccccccc----CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGIT-----SCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~-----qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.+.+.+.+.|+||++.+..|.. .-..|||.||..|+.++ ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4567889999999999998721 12469999999999886 48999999875
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.55 E-value=9.4e-09 Score=74.43 Aligned_cols=48 Identities=27% Similarity=0.656 Sum_probs=42.6
Q ss_pred hhcCCceeeeccccCccccccccccCCCce-eccccccccCCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNL-VCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l~~CP~Cr~~~~ 63 (263)
.+++.+.+.|+||++.+.+|+.. .|||. ||..|+.++..||.||.++.
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVFV--PCGHLVTCKQCAEAVDKCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEE--TTCCBCCCHHHHTTCSBCTTTCCBCS
T ss_pred HhcCccCCCCCCCCCCCCCEEEc--CCCChhHHHHhhhcCccCCCcCcCcc
Confidence 34567788999999999999874 69999 99999999999999999886
No 36
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=8.9e-09 Score=74.60 Aligned_cols=48 Identities=27% Similarity=0.656 Sum_probs=42.4
Q ss_pred hhcCCceeeeccccCccccccccccCCCce-eccccccccCCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNL-VCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l~~CP~Cr~~~~ 63 (263)
.+++.+.+.|+||++.+..|++. .|||. ||..|+.++..||.||.++.
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~--pCgH~~~C~~C~~~~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFV--PCGHLVTCKQCAEAVDKCPMCYTVIT 67 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCS--SSCCCCBCHHHHHHCSBCTTTCCBCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEe--cCCCHHHHHHHhhCCCCCccCCceec
Confidence 35567788999999999999863 69999 99999999899999999886
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.52 E-value=2.3e-08 Score=70.86 Aligned_cols=50 Identities=22% Similarity=0.622 Sum_probs=39.8
Q ss_pred hcCCceeeeccccCccccccc-----cccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 15 ELIASISECGVCLEPLDRGIT-----SCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~-----qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
....+.+.|+||++.+..|+. ....|||.||..|+.++ ..||.||.++..
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 445678899999999998820 12469999999999885 489999999863
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=3e-08 Score=68.97 Aligned_cols=43 Identities=30% Similarity=0.868 Sum_probs=36.7
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-------CCCCCC
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-------LKCPFC 58 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-------~~CP~C 58 (263)
.+.+.+.+.||||++.+..|+.. .|||+||..|+.++ ..||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45678899999999999999864 69999999999875 269987
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.51 E-value=3.1e-08 Score=72.82 Aligned_cols=51 Identities=33% Similarity=0.716 Sum_probs=39.9
Q ss_pred chhcCCceeeeccccCccc--cccc-cccCCCceecccccccc-----CCCCCCccCCcc
Q psy12127 13 CKELIASISECGVCLEPLD--RGIT-SCQTCGNLVCTSCAARL-----LKCPFCRITIDY 64 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~--~Pv~-qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~ 64 (263)
..+++.+.+.||||++++. ++.+ .| .|||.||..|+.++ ..||.||+++..
T Consensus 4 ~~~~~~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 4 SPDAKEDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CSCCCCCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccccccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3566889999999999985 3332 23 38999999999875 379999999863
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.49 E-value=3.9e-08 Score=83.26 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=55.0
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc----C-CCCCCccCCccc-ccccHHHHHhhhcce
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----L-KCPFCRITIDYS-WQRNVALERIFTKLE 80 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~-~CP~Cr~~~~~~-~~rn~~le~~v~~l~ 80 (263)
..++.+.|.||||+++|.+||.. .|||+||..|+.++ + .||.|+.++... ..+|.+|.++++...
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 45678999999999999999864 58999999999884 2 599999998753 778999999988764
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=2.5e-08 Score=69.87 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=37.3
Q ss_pred ceeeeccccC-ccccccc--cccCCCceecccccccc-----CCCCCCccCCcc
Q psy12127 19 SISECGVCLE-PLDRGIT--SCQTCGNLVCTSCAARL-----LKCPFCRITIDY 64 (263)
Q Consensus 19 ~~l~CpIC~~-~l~~Pv~--qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~~ 64 (263)
+.+.||||++ .+..|+. .-..|||.||..|+.++ ..||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 8998842 11469999999999886 379999999864
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.48 E-value=6.4e-08 Score=65.23 Aligned_cols=46 Identities=30% Similarity=0.690 Sum_probs=37.1
Q ss_pred CCceeeeccccCcccc---ccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 17 IASISECGVCLEPLDR---GITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 17 l~~~l~CpIC~~~l~~---Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+++...|+||++.+.. ++ .-+.|||.||..|+.++ ..||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEAR-FLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCE-ECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceE-ECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999987 43 33459999999999886 38999998764
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=4.9e-08 Score=66.37 Aligned_cols=43 Identities=35% Similarity=0.855 Sum_probs=36.5
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccccc-------CCCCCC
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-------LKCPFC 58 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-------~~CP~C 58 (263)
.+.+.+.+.|+||++.+..|+. ..|||+||..|+.++ ..||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVI--IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCC--CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEe--CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567889999999999999975 369999999999875 268887
No 44
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.40 E-value=4.8e-08 Score=67.57 Aligned_cols=45 Identities=27% Similarity=0.790 Sum_probs=37.1
Q ss_pred ceeeeccccCcccccc------ccccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 19 SISECGVCLEPLDRGI------TSCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv------~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
+.+.|+||++.+..|. .. ..|||.||..|+.++ ..||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEE-ETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEe-CCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4678999999999872 22 469999999999885 489999999863
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.39 E-value=1.5e-07 Score=68.02 Aligned_cols=52 Identities=31% Similarity=0.556 Sum_probs=41.1
Q ss_pred chhcCCceeeeccccCccccccc-cccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 13 CKELIASISECGVCLEPLDRGIT-SCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~~Pv~-qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
..+.+.+.+.|+||++.+..|.. .-..|||.||..|+.++ ..||.||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 35667788999999999986631 11359999999999885 489999999863
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.38 E-value=1.3e-07 Score=66.55 Aligned_cols=44 Identities=25% Similarity=0.720 Sum_probs=36.9
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+...|+||++.+..|+.. ..|||.||..|+.++ ..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMA-LPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEE-TTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEe-cCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999999987533 469999999999875 48999999886
No 47
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.34 E-value=8.2e-08 Score=85.62 Aligned_cols=63 Identities=14% Similarity=0.303 Sum_probs=51.5
Q ss_pred CCceeeeccccCccccccccccCCCceecccccccc------CCCCC--CccCCccc-ccccHHHHHhhhcce
Q psy12127 17 IASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL------LKCPF--CRITIDYS-WQRNVALERIFTKLE 80 (263)
Q Consensus 17 l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l------~~CP~--Cr~~~~~~-~~rn~~le~~v~~l~ 80 (263)
....+.||||+++|..||.. ..|||+||+.|+.++ ..||. |+..+... ...|..|.++++..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts-~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLIS-RKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEE-SSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeee-CCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 46889999999999999852 469999999999884 16999 99987643 667899988886543
No 48
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.31 E-value=8.7e-08 Score=70.36 Aligned_cols=49 Identities=33% Similarity=0.672 Sum_probs=42.7
Q ss_pred hhcCCceeeeccccCccccccccccCCCce-eccccccccCCCCCCccCCcc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNL-VCTSCAARLLKCPFCRITIDY 64 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l~~CP~Cr~~~~~ 64 (263)
.+++.+...|+||++....|++. .|||. ||..|..++..||.||.++..
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~~--pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTFC--PCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEE--TTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred HHcCCCCCEeEEeCcccCcEEEE--CCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 34566778999999999999875 68999 999999999999999998863
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.28 E-value=2.9e-07 Score=61.83 Aligned_cols=43 Identities=28% Similarity=0.761 Sum_probs=35.1
Q ss_pred ceeeeccccCcccc----ccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDR----GITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~----Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+...|+||++.+.+ ++ ...|||.||..|+.++ ..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~--~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAH--VLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEE--ECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeE--ecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999865 33 2469999999999986 48999999864
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2.6e-07 Score=66.08 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=39.7
Q ss_pred hhcCCceeeeccccCcccccccc-ccCCCceecccccccc----CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDRGITS-CQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~q-C~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.+++.+...|+||++.+..|... -..|||.||..|+.++ ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 34567788999999999877421 1158999999999885 48999999876
No 51
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.24 E-value=3.2e-07 Score=64.73 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=38.2
Q ss_pred hhcCCceeeeccccCcccc--ccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDR--GITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~--Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.++..+...|+||++.+.. ++.. ..|||.||..|+.++ ..||.||..+.
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRR-LPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEE-eCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3455677899999998863 2222 459999999999885 48999999886
No 52
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.3e-07 Score=66.87 Aligned_cols=46 Identities=22% Similarity=0.767 Sum_probs=39.1
Q ss_pred hcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+++.+.+.|+||++.+.. +. ..|||.||..|+.++ ..||.||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~--~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LI--LPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EE--ETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred hcCCCCCCCeeCCcCccC-cc--cCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 456788999999999998 43 469999999999886 37999999886
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=4.1e-07 Score=65.35 Aligned_cols=48 Identities=19% Similarity=0.527 Sum_probs=38.7
Q ss_pred hcCCceeeeccccCccccc--cccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 15 ELIASISECGVCLEPLDRG--ITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+...+...|+||++.+..+ +.. ..|||.||..|+.++ ..||.||.++.
T Consensus 18 ~~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 18 NHQSEQTLCVVCMCDFESRQLLRV-LPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCSSSCCEETTTTEECCBTCEEEE-ETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cccCCCCCCeECCcccCCCCeEEE-ECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 3455778999999999877 222 359999999999986 48999999886
No 54
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=6e-07 Score=64.01 Aligned_cols=44 Identities=23% Similarity=0.658 Sum_probs=39.3
Q ss_pred CceeeeccccCccccccccccCCCce-eccccccccCCCCCCccCCc
Q psy12127 18 ASISECGVCLEPLDRGITSCQTCGNL-VCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l~~CP~Cr~~~~ 63 (263)
.+...|+||++....+++. .|||. +|..|..++..||.||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~--pCgH~~~C~~C~~~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLL--PCRHTCLCDGCVKYFQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCCEET--TTTBCCSCTTHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEE--CCCChhhhHHHHhcCCCCCCCCcchh
Confidence 4577899999999998864 68999 99999999899999999986
No 55
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.15 E-value=5.8e-07 Score=67.27 Aligned_cols=48 Identities=17% Similarity=0.459 Sum_probs=38.3
Q ss_pred hhcCCceeeeccccCcccc---ccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDR---GITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~---Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+....+...|+||++.+.. ++. ..|||.||..|+.++ ..||.||..+.
T Consensus 34 ~~~~~~~~~C~IC~~~~~~~~~~~~--l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 34 HGAVGQEMCCPICCSEYVKGDVATE--LPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSSSSCSEETTTTEECCTTCEEEE--ETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred ccccCCCCCCcccChhhcCCCcEEe--cCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3456678899999998876 432 349999999999885 48999999875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.15 E-value=3.7e-07 Score=71.70 Aligned_cols=45 Identities=24% Similarity=0.765 Sum_probs=38.3
Q ss_pred CceeeeccccCccccc-------cccccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 18 ASISECGVCLEPLDRG-------ITSCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~P-------v~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
.+.+.|+||++.+..| +. ..|||.||..|+.++ ..||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~--~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE--ETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEe--cCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4678999999999988 43 469999999999885 389999998863
No 57
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.03 E-value=1.4e-06 Score=80.74 Aligned_cols=47 Identities=36% Similarity=0.789 Sum_probs=41.8
Q ss_pred hcCCceeeeccccCccccccccccCCCce-eccccccccCCCCCCccCCc
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCGNL-VCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l~~CP~Cr~~~~ 63 (263)
+.+.+.+.|+||++.+..|+.. .|||. ||..|+.++..||.||.++.
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~l--pCgH~~fC~~C~~~~~~CP~CR~~i~ 337 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFI--PCGHLVVCQECAPSLRKCPICRGIIK 337 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEE--TTCCEEECTTTGGGCSBCTTTCCBCC
T ss_pred HhCcCCCCCCccCCcCCceEEc--CCCChhHhHHHHhcCCcCCCCCCCcc
Confidence 3456778999999999999875 69999 99999999999999999986
No 58
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.94 E-value=2.2e-06 Score=66.19 Aligned_cols=44 Identities=23% Similarity=0.592 Sum_probs=34.8
Q ss_pred eeeeccccCccccccc----------------cccCCCceecccccccc---------CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLDRGIT----------------SCQTCGNLVCTSCAARL---------LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~----------------qC~~CGH~~C~~C~~~l---------~~CP~Cr~~~~ 63 (263)
...|+||++.+..|.. .-..|||.||..|+.++ ..||.||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4589999999977641 12469999999999874 27999999876
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.93 E-value=1.4e-06 Score=60.96 Aligned_cols=45 Identities=31% Similarity=0.714 Sum_probs=37.1
Q ss_pred ceeeeccccCccccccccccCCCce-eccccccccC----CCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNL-VCTSCAARLL----KCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l~----~CP~Cr~~~~ 63 (263)
....|+||++...+++..-..|||. +|..|..++. .||.||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3457999999999886533468998 9999999863 8999999985
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.92 E-value=2.6e-06 Score=66.78 Aligned_cols=46 Identities=26% Similarity=0.753 Sum_probs=37.9
Q ss_pred CceeeeccccCcccccc------ccccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 18 ASISECGVCLEPLDRGI------TSCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv------~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
.+.+.|+||++.+..|+ .. ..|||.||..|+.++ ..||.||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEE-ETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEe-CCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 46788999999999872 22 469999999999885 489999999863
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=3.7e-06 Score=61.59 Aligned_cols=44 Identities=16% Similarity=0.510 Sum_probs=32.7
Q ss_pred eeeeccccCccccc-------------cccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLDRG-------------ITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~~P-------------v~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.-.|+||++.+..+ +..-..|||.|+..|+.++ ..||.||.++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 34577777777653 2222469999999999985 47999999875
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.86 E-value=3.3e-06 Score=59.28 Aligned_cols=45 Identities=33% Similarity=0.761 Sum_probs=37.3
Q ss_pred ceeeeccccCccccccccccCCCce-ecccccccc----CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNL-VCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~-~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
+...|+||++...++++.-..|||. +|..|..++ ..||.||.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 5568999999999987532368999 899999886 36999999885
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.77 E-value=2.3e-06 Score=64.25 Aligned_cols=43 Identities=26% Similarity=0.632 Sum_probs=33.8
Q ss_pred ceeeeccccCcccccccc-ccCCCceecccccccc------------CCCCC--CccC
Q psy12127 19 SISECGVCLEPLDRGITS-CQTCGNLVCTSCAARL------------LKCPF--CRIT 61 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~q-C~~CGH~~C~~C~~~l------------~~CP~--Cr~~ 61 (263)
+.+.|+||++.+..|... -..|||.||..|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 567899999999888532 1359999999998763 16988 8887
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.76 E-value=7.2e-06 Score=76.96 Aligned_cols=45 Identities=36% Similarity=0.807 Sum_probs=38.2
Q ss_pred CCceeeeccccCccccccccccCCCceecccccccc-----CCCCCCccCCc
Q psy12127 17 IASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITID 63 (263)
Q Consensus 17 l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~ 63 (263)
..+...|+||.+.+..|+. ..|||.||..|+..+ ..||.||.++.
T Consensus 329 ~~~~~~C~ICle~~~~pv~--lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEE--ETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCccCcCCCCeEE--eCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 4455799999999999975 469999999999864 48999999886
No 65
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.71 E-value=2e-05 Score=56.71 Aligned_cols=53 Identities=26% Similarity=0.455 Sum_probs=46.5
Q ss_pred cceecCCCCCCCceeeeccchhhhhhc-ccCCceecCCCCCCCCccChhhHHHHHhcccC
Q psy12127 78 KLELPCRNFRFGCKVYLPKAKRDKHED-KCKFRQLKCPMHACPWTNSVLHLSEHLNQVHH 136 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~H~ 136 (263)
...+.|++ ||+..+...+++.|++ +|+++++.|++ |++.+.+.+|..|.. .+.
T Consensus 14 ~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~~-~Cp 67 (76)
T 2yuc_A 14 FNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEG-MCP 67 (76)
T ss_dssp CSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTTT-SCT
T ss_pred CcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHHh-HCC
Confidence 35788876 8999999999999998 99999999986 999999999999984 444
No 66
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=3.8e-05 Score=58.77 Aligned_cols=50 Identities=28% Similarity=0.587 Sum_probs=32.7
Q ss_pred eecCCCCCCCceeeeccchhhhhhcccCCceecCCC--CCCCCccChhhHHHHHh
Q psy12127 80 ELPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLKCPM--HACPWTNSVLHLSEHLN 132 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~--~~C~~~g~~~~L~~Hl~ 132 (263)
.+.||| .|...+...++++|.+.|+...+.|++ -||.+++.+.+|.+|++
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~ 88 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLE 88 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHH
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHh
Confidence 566665 566666666666666666666666665 66666666666666665
No 67
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=9.5e-05 Score=56.52 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=44.2
Q ss_pred CCC-CCccCCcccccccHHHHH--hhhcceecCCCCCCCceeeeccchhhhhhcccCCceecCC
Q psy12127 54 KCP-FCRITIDYSWQRNVALER--IFTKLELPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLKCP 114 (263)
Q Consensus 54 ~CP-~Cr~~~~~~~~rn~~le~--~v~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP 114 (263)
.|| .|...+ .|...-|- +.-...++|+|+.+||+.++...++.+||+.|+-..+.|.
T Consensus 39 ~CP~~Cga~i----~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 39 GCPLVCGAVF----HSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp ECTTCCSCEE----EHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eCCcccCCee----ehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 488 687743 33332222 3457889999999999999999999999999998887774
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.25 E-value=7.5e-05 Score=51.97 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=36.3
Q ss_pred eeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.+.|||++++|.+||. ...+||+|++.|+.++ +.||..+.++.
T Consensus 3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 4789999999999975 2246999999999996 47999999886
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.23 E-value=9e-05 Score=57.25 Aligned_cols=44 Identities=18% Similarity=0.533 Sum_probs=34.1
Q ss_pred eeeeccccCccccccccc----------------cCCCceecccccccc----CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLDRGITSC----------------QTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC----------------~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
.-.|+||++.+..+-..| ..|||.|+..|+.++ ..||.||..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 346999999888652111 469999999999985 48999999865
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.09 E-value=7.9e-05 Score=58.68 Aligned_cols=43 Identities=19% Similarity=0.521 Sum_probs=0.0
Q ss_pred eeeccccCccccccccc----------------cCCCceecccccccc----CCCCCCccCCc
Q psy12127 21 SECGVCLEPLDRGITSC----------------QTCGNLVCTSCAARL----LKCPFCRITID 63 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC----------------~~CGH~~C~~C~~~l----~~CP~Cr~~~~ 63 (263)
-.|+||++.+..|-..| ..|||.|+..|+.++ ..||.||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 37999999988642222 259999999999985 38999999865
No 71
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.68 E-value=0.00024 Score=50.86 Aligned_cols=40 Identities=28% Similarity=0.545 Sum_probs=36.1
Q ss_pred cchhhhhhcccCCceecCCCCCCCCccChhhHHHHHhcccC
Q psy12127 96 KAKRDKHEDKCKFRQLKCPMHACPWTNSVLHLSEHLNQVHH 136 (263)
Q Consensus 96 ~~~~~~He~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~H~ 136 (263)
..+++.|++.|+|+++.||. +|+....+.+|..|+.+...
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~ 41 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCP 41 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCT
T ss_pred chHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCC
Confidence 35788999999999999996 99999999999999997666
No 72
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.43 E-value=0.00049 Score=49.14 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=42.3
Q ss_pred ceecCCCCCCCceeeeccchhhhhhcccCCceecCCCCCCCCccChhhHHHHHhcc
Q psy12127 79 LELPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLKCPMHACPWTNSVLHLSEHLNQV 134 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~ 134 (263)
-.+.|++ |...+...++..|+..|+.+|+.|+. |+....+.+|..|+...
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~c 65 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEVC 65 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHHB
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHHc
Confidence 3566764 88999999999999999999999975 99888889999998753
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.30 E-value=0.0024 Score=52.39 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=45.4
Q ss_pred hcceecCCCCCCCceeeeccchhhhhh-cccCCceecCCCCCCCCccChhhHHHHHhc
Q psy12127 77 TKLELPCRNFRFGCKVYLPKAKRDKHE-DKCKFRQLKCPMHACPWTNSVLHLSEHLNQ 133 (263)
Q Consensus 77 ~~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~ 133 (263)
.-..++|+ ||++.+...++..|+ ..|++++..|+ .|+......+|..|...
T Consensus 107 ~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~--~C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 107 EFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCD--NCAASMAFEDKEIHDQN 158 (170)
T ss_dssp TTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECT--TTCCEEEGGGHHHHHTT
T ss_pred CceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECC--CCCCccCHHHHHhHHHh
Confidence 44567886 899999999999999 59999999997 59999999999999864
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.19 E-value=0.002 Score=49.15 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=32.2
Q ss_pred eeccccCccccccccccCCCceecccccccc-----CCCCCCccCCc
Q psy12127 22 ECGVCLEPLDRGITSCQTCGNLVCTSCAARL-----LKCPFCRITID 63 (263)
Q Consensus 22 ~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~ 63 (263)
-|++|..++..=... -.|.|.||.+|...+ +.||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRm-IPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRM-IPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEE-ETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeee-ccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 489999988854333 248999999999653 58999999986
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.93 E-value=0.0022 Score=48.13 Aligned_cols=33 Identities=24% Similarity=0.658 Sum_probs=29.3
Q ss_pred ceeeeccccC-ccccccccccCCCceeccccccc
Q psy12127 19 SISECGVCLE-PLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 19 ~~l~CpIC~~-~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
+.+.|+||.+ +..+|+..|..|||.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4678999996 57899998999999999999986
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.75 E-value=0.0055 Score=44.21 Aligned_cols=45 Identities=31% Similarity=0.757 Sum_probs=37.8
Q ss_pred CceeeeccccCccccccccccCCCceecccccccc------CCCCCCccCCc
Q psy12127 18 ASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL------LKCPFCRITID 63 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l------~~CP~Cr~~~~ 63 (263)
+..-.|.||.+++.+- ..|..|+|.|=..|+.++ ..||.|+.++.
T Consensus 13 ~~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4556899999999854 579899999999999874 37999999875
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.69 E-value=0.0031 Score=58.32 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=39.6
Q ss_pred CceeeeccccCcccc----cccccc--CCCceecccccccc---------------CCCCCCccCCcc
Q psy12127 18 ASISECGVCLEPLDR----GITSCQ--TCGNLVCTSCAARL---------------LKCPFCRITIDY 64 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~----Pv~qC~--~CGH~~C~~C~~~l---------------~~CP~Cr~~~~~ 64 (263)
...-+|+||+..+.+ |...|. .|||.|=+.|+.++ +.||.||.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 467789999999887 777787 69999999999874 259999999863
No 78
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=93.76 E-value=0.027 Score=38.86 Aligned_cols=39 Identities=31% Similarity=0.748 Sum_probs=31.4
Q ss_pred eeeccccCccccc-cccccCCCceeccccc----cccCCCCCCc
Q psy12127 21 SECGVCLEPLDRG-ITSCQTCGNLVCTSCA----ARLLKCPFCR 59 (263)
Q Consensus 21 l~CpIC~~~l~~P-v~qC~~CGH~~C~~C~----~~l~~CP~Cr 59 (263)
..|-.|...+.+. +++|+.|++.||..|- +.|..||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 3599999988654 4899999999999993 4467899883
No 79
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.73 E-value=0.028 Score=40.85 Aligned_cols=44 Identities=20% Similarity=0.476 Sum_probs=32.5
Q ss_pred CceeeeccccCccc--cccccccCC-----Cceecccccccc------CCCCCCccCCc
Q psy12127 18 ASISECGVCLEPLD--RGITSCQTC-----GNLVCTSCAARL------LKCPFCRITID 63 (263)
Q Consensus 18 ~~~l~CpIC~~~l~--~Pv~qC~~C-----GH~~C~~C~~~l------~~CP~Cr~~~~ 63 (263)
.+...|.||++.+. .++. ..| +|.|-..|+.++ ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~--~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLI--TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEE--CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeE--eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34568999997663 3432 234 499999999986 27999999875
No 80
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.77 E-value=0.048 Score=41.90 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHhhhcceecCCCCCCCceeeeccchhhhh---hcccCCceecCCCCCCCCccChhhHHHHHhcccC
Q psy12127 71 ALERIFTKLELPCRNFRFGCKVYLPKAKRDKH---EDKCKFRQLKCPMHACPWTNSVLHLSEHLNQVHH 136 (263)
Q Consensus 71 ~le~~v~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~H~ 136 (263)
.+++.+..-...||. |...+...++..- ++.=.-..+.||+.||+|.|...+|..|+++.+.
T Consensus 44 Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~ 108 (118)
T 3hct_A 44 CIIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEF 108 (118)
T ss_dssp HHHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC
T ss_pred HHHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchh
Confidence 455555544458885 7777665432211 0111235678999999999999999999988776
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=91.51 E-value=0.14 Score=38.99 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=49.7
Q ss_pred CCCCCccCCccc-------ccccHHHHHhhhcceecCCCCCCCceeeeccchhhh----hhcccCCceecCCCCCCCCcc
Q psy12127 54 KCPFCRITIDYS-------WQRNVALERIFTKLELPCRNFRFGCKVYLPKAKRDK----HEDKCKFRQLKCPMHACPWTN 122 (263)
Q Consensus 54 ~CP~Cr~~~~~~-------~~rn~~le~~v~~l~v~C~~~~~GC~~~~~~~~~~~----He~~C~~~~~~CP~~~C~~~g 122 (263)
.||.|...+... .+-..-+++.+......||. |...+...++.. -++.=.-..+.||+.||+|.+
T Consensus 25 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~ 100 (116)
T 1rmd_A 25 SCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEV 100 (116)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEE
T ss_pred CCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchh
Confidence 688887765421 11124566666554567885 777776554321 112222346789989999999
Q ss_pred ChhhHHHHHhcc
Q psy12127 123 SVLHLSEHLNQV 134 (263)
Q Consensus 123 ~~~~L~~Hl~~~ 134 (263)
...++..|+.+.
T Consensus 101 ~~~~~~~H~~~C 112 (116)
T 1rmd_A 101 SLEKYNHHVSSH 112 (116)
T ss_dssp EHHHHHHHHHTS
T ss_pred hHhHHHHHHHHh
Confidence 999999999753
No 82
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.08 E-value=0.19 Score=35.30 Aligned_cols=37 Identities=30% Similarity=0.552 Sum_probs=31.6
Q ss_pred chhhhhhc-ccCCceecCCCCCCCCccChhhHHHHHhcccC
Q psy12127 97 AKRDKHED-KCKFRQLKCPMHACPWTNSVLHLSEHLNQVHH 136 (263)
Q Consensus 97 ~~~~~He~-~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~H~ 136 (263)
.++..|+. .|+++++.|+ .|+......+|..|. ....
T Consensus 3 ~~L~~H~~~~c~~r~~~C~--~C~~~~~~~~L~~H~-~~c~ 40 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQ--HCDLELSILKLKEHE-DYCG 40 (75)
T ss_dssp CCCSCCCCCCCCCCCEECS--SSCCEECHHHHHHHH-HHHH
T ss_pred hHHHhhCcccCCCcccCCc--ccChHhhHHHHHHHH-hHcC
Confidence 46789986 8999999997 499999999999998 5444
No 83
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.47 E-value=0.32 Score=32.44 Aligned_cols=52 Identities=21% Similarity=0.405 Sum_probs=37.2
Q ss_pred eecCCCCCCCceeeeccchhhhhhcccCCceecCCCCCCCCc-cChhhHHHHHhcccC
Q psy12127 80 ELPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLKCPMHACPWT-NSVLHLSEHLNQVHH 136 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~C~~~-g~~~~L~~Hl~~~H~ 136 (263)
.+.|.. |+..+...++..|+..+.-+|+.|++ .|+.. ....+|..|++.+..
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~ 62 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCN 62 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhcc
Confidence 456654 77777777788888778888899962 58776 456688899876544
No 84
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=87.21 E-value=0.56 Score=37.79 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=26.9
Q ss_pred ceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 79 LELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
-.+.|+ -|+..+.. .++..|+.. -.-+++.|+ .|+... ....|..|+...+.
T Consensus 104 ~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~ 158 (190)
T 2i13_A 104 KPYACP----ECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTG 158 (190)
T ss_dssp CCEECT----TTCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHHHHHHHC
T ss_pred CCCcCC----CCCCccCCHHHHHHHHHHhCCCCCeECC--CCCcccCCHHHHHHHHHhcCC
Confidence 445565 36665543 345555532 223456664 366553 45566666665443
No 85
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=86.59 E-value=0.67 Score=32.66 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred ceecCCCCCCCceeeecc-chhhhhhcccCC---ceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 79 LELPCRNFRFGCKVYLPK-AKRDKHEDKCKF---RQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~---~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
-.+.|+. |...+.. ..+..|+..-.- +++.|+ .|+... ....|..|++..|.
T Consensus 34 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~ 90 (95)
T 2yt9_A 34 KPYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHS 90 (95)
T ss_dssp CSEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCS--SSCCCBSSHHHHHHHHHHTSC
T ss_pred CCCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECC--CccchhCCHHHHHHHHHHhcC
Confidence 3455653 6666544 446667654322 678896 487774 67789999988775
No 86
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=86.04 E-value=0.33 Score=42.26 Aligned_cols=44 Identities=32% Similarity=0.776 Sum_probs=37.4
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc------CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL------LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l------~~CP~Cr~~~~ 63 (263)
....|.+|.+++.+- ..|++|++.|=..|+.++ ..||.|+.++.
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 477899999999964 579999999999998874 28999999875
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=84.17 E-value=0.36 Score=36.46 Aligned_cols=37 Identities=30% Similarity=0.737 Sum_probs=29.6
Q ss_pred eeeccccCccccccccccCCCceecccccccc---CCCCCCccCCc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAARL---LKCPFCRITID 63 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l---~~CP~Cr~~~~ 63 (263)
..||+|...|.. .+ |+..|..|-... ..||.|..++.
T Consensus 33 ~~CP~Cq~eL~~-----~g-~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DN-GHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ET-TEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cC-CEEECccccchhhccccCcchhhHHH
Confidence 789999999875 24 666799997764 48999999885
No 88
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.51 E-value=2.2 Score=32.69 Aligned_cols=55 Identities=22% Similarity=0.460 Sum_probs=28.7
Q ss_pred ceecCCCCCCCceeeecc-chhhhhh-c-ccCCceecCCCCCCCCcc-ChhhHHHHHhccc
Q psy12127 79 LELPCRNFRFGCKVYLPK-AKRDKHE-D-KCKFRQLKCPMHACPWTN-SVLHLSEHLNQVH 135 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~-~~~~~He-~-~C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H 135 (263)
-.+.|+. .||+..+.. .++..|. . --.-+++.|+.++|+... ....|..|++..|
T Consensus 96 ~~~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 96 KPYMCEH--EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp CCEECCS--TTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CCeeCCC--CCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence 3455653 256665533 4455554 2 122355666555566653 4556666666555
No 89
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=82.52 E-value=1.2 Score=30.41 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=35.8
Q ss_pred hcceecCCCCCCCceeeecc-chhhhhhcccCCceecCCCCC-CCCcc-ChhhHHHHHhccc
Q psy12127 77 TKLELPCRNFRFGCKVYLPK-AKRDKHEDKCKFRQLKCPMHA-CPWTN-SVLHLSEHLNQVH 135 (263)
Q Consensus 77 ~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~~-C~~~g-~~~~L~~Hl~~~H 135 (263)
..-.+.|+. .||+..+.. .++..|+..-.- +.|+..+ |+... ....|..|++..|
T Consensus 28 ~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~~H~~~hh 85 (85)
T 2j7j_A 28 QQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLKHVAECH 85 (85)
T ss_dssp TTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred CCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence 345577864 378887754 556677653221 7786533 88875 5678889987765
No 90
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=80.95 E-value=1.2 Score=31.99 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=30.3
Q ss_pred eeeecc--ccCcccc----cccccc-----CCCceeccccccccCCCCCCccC
Q psy12127 20 ISECGV--CLEPLDR----GITSCQ-----TCGNLVCTSCAARLLKCPFCRIT 61 (263)
Q Consensus 20 ~l~CpI--C~~~l~~----Pv~qC~-----~CGH~~C~~C~~~l~~CP~Cr~~ 61 (263)
..-||. |...+.. +..+|+ .||+.||..|...+.. -.|...
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 455887 8777652 335897 8999999999998755 667654
No 91
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=80.82 E-value=1 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.548 Sum_probs=22.5
Q ss_pred eccccCcccc----ccccccCCCceecccccccc
Q psy12127 23 CGVCLEPLDR----GITSCQTCGNLVCTSCAARL 52 (263)
Q Consensus 23 CpIC~~~l~~----Pv~qC~~CGH~~C~~C~~~l 52 (263)
||-|...+.. +..+|+.||+.||..|...+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 8888776542 23579889999999997755
No 92
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.97 E-value=2.7 Score=30.70 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=62.4
Q ss_pred ceeeeccccCccccccccccCCCceeccccccccCCCCCCccCCcccccccHHHHHh-----hhcceecCCCCCCCceee
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLKCPFCRITIDYSWQRNVALERI-----FTKLELPCRNFRFGCKVY 93 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l~~CP~Cr~~~~~~~~rn~~le~~-----v~~l~v~C~~~~~GC~~~ 93 (263)
..+.|++|...+...... . .|.- ..-..+.-.|+.|...+. ...++..-.. ...-.+.|+. |+..
T Consensus 6 ~~~~C~~C~~~f~~~~~l--~-~H~~-~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~ 75 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYL--K-VHNR-KHTGEKPFECPKCGKCYF--RKENLLEHEARNCMNRSEQVFTCSV----CQET 75 (124)
T ss_dssp SSCCCTTTCCCCSSHHHH--H-HHHH-HHSSCCSCBCTTTCCBCS--SHHHHHHHHHHCCCCSCCCCEECSS----SCCE
T ss_pred CCCCCCCCCCcCCCHHHH--H-HHHH-hCCCCCCeECCCCCchhc--CHHHHHHHHhhhhcCCCCCCeECCC----CCCc
Confidence 457788888877654221 1 2321 000011237999988765 2222221111 1234577874 8887
Q ss_pred ecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 94 LPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 94 ~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
+.. ..+..|... -.-+++.|+ .|+... ....|..|+...|.
T Consensus 76 f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~ 119 (124)
T 2dlq_A 76 FRRRMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSHMIKLHS 119 (124)
T ss_dssp ESSHHHHHHHHHHHSSSCSEECS--SSCCEESSHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHcCCCCCccCC--CccchhCCHHHHHHHHHHHCC
Confidence 755 557778753 234678996 488774 67789999998885
No 93
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=79.57 E-value=0.85 Score=33.81 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=59.3
Q ss_pred eeeec--cccCccccccccccCCCceeccccccccCCCCCCccCCcccccccHHHH--HhhhcceecCCCCCCCceeeec
Q psy12127 20 ISECG--VCLEPLDRGITSCQTCGNLVCTSCAARLLKCPFCRITIDYSWQRNVALE--RIFTKLELPCRNFRFGCKVYLP 95 (263)
Q Consensus 20 ~l~Cp--IC~~~l~~Pv~qC~~CGH~~C~~C~~~l~~CP~Cr~~~~~~~~rn~~le--~~v~~l~v~C~~~~~GC~~~~~ 95 (263)
.+.|+ +|...+...... . .|.-= . ..+.-.|+.|...+. ....+..- .-...-.+.|+. .+|+..+.
T Consensus 5 ~~~C~~~~C~~~f~~~~~l--~-~H~~~-h-~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~ 75 (124)
T 1ubd_C 5 TIACPHKGCTKMFRDNSAM--R-KHLHT-H-GPRVHVCAECGKAFV--ESSKLKRHQLVHTGEKPFQCTF--EGCGKRFS 75 (124)
T ss_dssp CEECCSTTCCCEESSHHHH--H-HHHGG-G-SCCCEECTTTCCEES--SHHHHHHHGGGTSCCCCEECCS--TTCCCEES
T ss_pred cccCCCCCCcCccCCHHHH--H-HHHHH-c-CCCCeECCCCCchhC--CHHHHHHHHHHcCCCCCeeCCC--CCCcCccC
Confidence 46677 777776654211 1 23210 0 111226888988765 22221111 111233466764 26888775
Q ss_pred c-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 96 K-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 96 ~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
. ..+..|+.. -.-+++.||...|+... ....|..|++..+.
T Consensus 76 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~ 119 (124)
T 1ubd_C 76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119 (124)
T ss_dssp CHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred CHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence 4 556677642 23467889866788774 56788999886553
No 94
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.50 E-value=1.8 Score=30.35 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=32.8
Q ss_pred eecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 80 ELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.+.|+. |...+.. ..+..|+.. -.-+++.|+ .|+... ...+|..|++..|.
T Consensus 36 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~ 89 (96)
T 2dmd_A 36 PYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTVHLRSHTG 89 (96)
T ss_dssp SEECSS----SCCEESSHHHHHHHHHHSCCCCCEECS--SSSCEESSHHHHHHHHTTCCS
T ss_pred CEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHHHHHHHHHHhcC
Confidence 355653 6666543 445666643 233578896 487774 67899999987765
No 95
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=79.01 E-value=0.93 Score=33.19 Aligned_cols=43 Identities=28% Similarity=0.610 Sum_probs=34.5
Q ss_pred eeeeccccCccccccccccCCCceecccccccc--CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~~~ 63 (263)
-|.|..|..+|....+.-.+ |..+|..|..++ .+|..|.++|.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~-g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKD-NKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEET-TEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcCeeECcC-CEEEChhHhhhhcCCccccCCCccc
Confidence 37899999999765443356 999999999886 58999999886
No 96
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=78.28 E-value=1.1 Score=34.21 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=34.4
Q ss_pred eeeeccccCccccccccccCCCceecccccccc--CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~~~ 63 (263)
-|.|..|..+|..-.+.-.. |..+|..|..++ .+|..|+.+|.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~-g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVN-DKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEET-TEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeEC-CEEechHHhCcCcCccCcccCCcCC
Confidence 38899999999863333356 999999999885 58999999986
No 97
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.21 E-value=1.1 Score=35.03 Aligned_cols=32 Identities=28% Similarity=0.867 Sum_probs=25.4
Q ss_pred eeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 20 ISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 20 ~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
.-.|.+|...+..- -.-|..||++||+.|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34799999987632 257999999999999765
No 98
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=77.72 E-value=0.68 Score=36.79 Aligned_cols=28 Identities=18% Similarity=0.521 Sum_probs=23.9
Q ss_pred ceecCCCCCCCCccChhhHHH-HHhcccC
Q psy12127 109 RQLKCPMHACPWTNSVLHLSE-HLNQVHH 136 (263)
Q Consensus 109 ~~~~CP~~~C~~~g~~~~L~~-Hl~~~H~ 136 (263)
-.+.||+.||+|+|...++.. |+.+.+.
T Consensus 103 L~v~Cpn~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 103 LPAVCPSDGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp SEEECCSTTCCCEEEHHHHHHHTTTCCHH
T ss_pred cccccCCCCCCCEeEHHHHHHHHHHHhHH
Confidence 467899999999999999998 9876554
No 99
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=77.63 E-value=1.3 Score=31.22 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=24.1
Q ss_pred eeccccCccccc--cccccCCCceeccccccc
Q psy12127 22 ECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 22 ~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
.|.+|...+..- -..|..||.+||+.|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 799999877632 256999999999999764
No 100
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.52 E-value=1.4 Score=31.94 Aligned_cols=33 Identities=21% Similarity=0.668 Sum_probs=25.7
Q ss_pred ceeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 19 SISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 19 ~~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
+.-.|.+|...+..- -..|..||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345799999987632 256999999999999765
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.48 E-value=1.4 Score=31.75 Aligned_cols=32 Identities=22% Similarity=0.839 Sum_probs=25.1
Q ss_pred eeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 20 ISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 20 ~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
.-.|.+|...+..- -..|..||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34699999887632 256999999999999765
No 102
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=77.43 E-value=2.7 Score=32.37 Aligned_cols=79 Identities=14% Similarity=0.291 Sum_probs=50.1
Q ss_pred CCCCCccCCcccccccH--HHHHhhhcceecCCCCCCCceeeecc-chhhhhhccc-CCceecCCCCCCCCcc-ChhhHH
Q psy12127 54 KCPFCRITIDYSWQRNV--ALERIFTKLELPCRNFRFGCKVYLPK-AKRDKHEDKC-KFRQLKCPMHACPWTN-SVLHLS 128 (263)
Q Consensus 54 ~CP~Cr~~~~~~~~rn~--~le~~v~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~C~~~g-~~~~L~ 128 (263)
.|+.|...+.. ...+ -+..-...-.+.|+. .+|...+.. ..+..|+..= .-+++.|+..+|+... ....|.
T Consensus 64 ~C~~C~~~f~~--~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~ 139 (155)
T 2rpc_A 64 ECPREGKSFKA--KYKLVNHIRVHTGEKPFPCPF--PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRK 139 (155)
T ss_dssp TCTTSSCCCSS--HHHHHHHTHHHHCCCSEECSC--TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHH
T ss_pred CCCCcccccCC--HHHHHHHHHhcCCCCcccCCc--CCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHH
Confidence 69999887752 2221 112222334577874 379888754 5677787632 3467899866788775 567899
Q ss_pred HHHhcccC
Q psy12127 129 EHLNQVHH 136 (263)
Q Consensus 129 ~Hl~~~H~ 136 (263)
.|++..+.
T Consensus 140 ~H~~~H~~ 147 (155)
T 2rpc_A 140 KHMHVHTS 147 (155)
T ss_dssp HSSTTTTS
T ss_pred HHHHHhcC
Confidence 99876554
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.73 E-value=1.1 Score=32.67 Aligned_cols=37 Identities=32% Similarity=0.789 Sum_probs=24.6
Q ss_pred eeeccccCccccccccccCCCceecccccccc---CCCCCCccCCc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAARL---LKCPFCRITID 63 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l---~~CP~Cr~~~~ 63 (263)
..||.|...|.. .. ++..|..|-..+ ..||.|+.++.
T Consensus 3 ~~CP~C~~~l~~-----~~-~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER-----NG-DTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE-----CS-SEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc-----CC-CceECccccccCCCcccCcchhhHHH
Confidence 578888887764 12 455577776554 36888887775
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.11 E-value=1.3 Score=33.87 Aligned_cols=24 Identities=29% Similarity=0.873 Sum_probs=18.5
Q ss_pred ccccCCCceecccccccc---CCCCCCccCC
Q psy12127 35 TSCQTCGNLVCTSCAARL---LKCPFCRITI 62 (263)
Q Consensus 35 ~qC~~CGH~~C~~C~~~l---~~CP~Cr~~~ 62 (263)
+.|.+||+.| ...+ +.||.|+...
T Consensus 68 ~~C~~CG~~F----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVF----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBC----CCCSSCCSSCSSSCCCC
T ss_pred cChhhCcCee----cccCCCCCCCcCCCCCc
Confidence 3799999999 3333 5899999754
No 105
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.90 E-value=1.6 Score=32.09 Aligned_cols=32 Identities=25% Similarity=0.717 Sum_probs=25.1
Q ss_pred eeeeccccCcccc--ccccccCCCceeccccccc
Q psy12127 20 ISECGVCLEPLDR--GITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 20 ~l~CpIC~~~l~~--Pv~qC~~CGH~~C~~C~~~ 51 (263)
.-.|.+|...+.. --..|..||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4469999987762 1257999999999999765
No 106
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=74.49 E-value=1.5 Score=30.76 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=25.1
Q ss_pred hhcCCceeeeccccCccccccccccCCCceeccccccc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
+..|.+.|-||+|...|.--. .. |..+|..|...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~~---~~-g~LvC~~c~~~ 37 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYLE---SE-QLLVNERLNLA 37 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEET---TT-TEEEETTTTEE
T ss_pred CHHHHHHhCCCCCCCcCeEeC---CC-CEEEcCCCCcc
Confidence 567899999999999887432 24 77777777543
No 107
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=73.97 E-value=4.2 Score=29.64 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCCCCccCCcccccccH--HHHHhhhcceecCCCCCCCceeeec-cchhhhhhcc----cCCceecCCCCCCCCcc-Chh
Q psy12127 54 KCPFCRITIDYSWQRNV--ALERIFTKLELPCRNFRFGCKVYLP-KAKRDKHEDK----CKFRQLKCPMHACPWTN-SVL 125 (263)
Q Consensus 54 ~CP~Cr~~~~~~~~rn~--~le~~v~~l~v~C~~~~~GC~~~~~-~~~~~~He~~----C~~~~~~CP~~~C~~~g-~~~ 125 (263)
.|+.|...+.. ...+ -+..-...-.+.|+. |+..+. ..++..|+.. =.-.++.|+ .|+... ...
T Consensus 9 ~C~~C~~~f~~--~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~--~C~~~f~~~~ 80 (124)
T 2dlq_A 9 ECPTCHKKFLS--KYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRM 80 (124)
T ss_dssp CCTTTCCCCSS--HHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECS--SSCCEESSHH
T ss_pred CCCCCCCcCCC--HHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECC--CCCCccCCHH
Confidence 78889887652 2221 122222345677874 888764 4567788752 234678896 588774 677
Q ss_pred hHHHHHhcccC
Q psy12127 126 HLSEHLNQVHH 136 (263)
Q Consensus 126 ~L~~Hl~~~H~ 136 (263)
.|..|+...+.
T Consensus 81 ~l~~H~~~h~~ 91 (124)
T 2dlq_A 81 ELRLHMVSHTG 91 (124)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHcCC
Confidence 89999987665
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.33 E-value=1.8 Score=31.23 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=24.7
Q ss_pred eeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 20 ISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 20 ~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
.-.|.+|...+..- -.-|..||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34699998877532 256999999999999764
No 109
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=72.44 E-value=3.6 Score=27.62 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=32.3
Q ss_pred cceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhccc
Q psy12127 78 KLELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVH 135 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H 135 (263)
.-.+.|+. |+..+.. ..+..|+.. -.-+++.|+ .|+... ....|..|++..+
T Consensus 27 ~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~ 81 (82)
T 2kmk_A 27 TRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQ--VCGKAFSQSSNLITHSRKHT 81 (82)
T ss_dssp CCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECT--TTSCEESSHHHHHHHHHHHC
T ss_pred CCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCC--CcchhhCChHHHHHHHHhhC
Confidence 34566664 7766543 445566542 233678886 487764 5778899987644
No 110
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=72.29 E-value=1.8 Score=30.35 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=24.6
Q ss_pred hhcCCceeeeccccCccccccccccCCCceeccccccc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
+..|.+.|.||+|...|.--. ..|-.+|..|...
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~----~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEYHQ----DKQELWSRQAKLA 35 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEEET----TTTEEEETTTTEE
T ss_pred ChHHhhheECCCCCCcCeEeC----CCCEEEcCCCCcE
Confidence 456889999999999887422 2377777777543
No 111
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=72.26 E-value=2.1 Score=31.30 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=25.4
Q ss_pred ceeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 19 SISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 19 ~~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
+.-.|.+|...+..- -.-|..||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 344799999877632 256999999999999765
No 112
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.06 E-value=2.2 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=26.2
Q ss_pred cccchhcCCceeeeccccCccccccccccCCCce
Q psy12127 10 CANCKELIASISECGVCLEPLDRGITSCQTCGNL 43 (263)
Q Consensus 10 ~~~~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~ 43 (263)
.+...+.+.+...||.|...+-+.+..|..|||.
T Consensus 4 ~~eie~r~~~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 4 FPEAEARIFKKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp CTTHHHHSSSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred HHHHHHHHhCCccCCCCCCcCCCCceecCCCCCc
Confidence 3455677888999999999866667778878875
No 113
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=71.46 E-value=5.5 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=32.1
Q ss_pred ceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 79 LELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
-.+.|+. |...+.. ..+..|+.. -.-+++.|+ .|+... ....|..|++..+.
T Consensus 44 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~ 98 (106)
T 2ee8_A 44 RPYTCDI----CHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQ 98 (106)
T ss_dssp CCCBCSS----SCCBCSCHHHHHHHGGGSCCCCTTSCS--SSCCCCSSHHHHHHHHHHTTS
T ss_pred CCcCCCC----ccchhCCHHHHHHHHHHhCCCCCeECC--CcCCcccCHHHHHHHHHHhCC
Confidence 3455653 6665533 445666543 223568886 487764 57789999876554
No 114
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=70.87 E-value=2 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.644 Sum_probs=29.9
Q ss_pred eeeccccCccccc--cccccCCCceecccccccc----CCCCCCccC
Q psy12127 21 SECGVCLEPLDRG--ITSCQTCGNLVCTSCAARL----LKCPFCRIT 61 (263)
Q Consensus 21 l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~l----~~CP~Cr~~ 61 (263)
-.|..|...+..- -..|.+||.+||+.|..+. ..|-.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 4799999887642 2569999999999997762 346666543
No 115
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=70.45 E-value=2.8 Score=30.23 Aligned_cols=51 Identities=27% Similarity=0.600 Sum_probs=32.7
Q ss_pred eecCCCCCCCceeeecc-chhhhhhcccCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 80 ELPCRNFRFGCKVYLPK-AKRDKHEDKCKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.+.|+. |...+.. ..+..|+.--.-+++.|+ .|+... ....|..|++..|.
T Consensus 42 ~~~C~~----C~~~f~~~~~l~~H~~H~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~ 94 (107)
T 1wjp_A 42 AAVCPY----CSLRFFSPELKQEHESKCEYKKLTCL--ECMRTFKSSFSIWRHQVEVHN 94 (107)
T ss_dssp SBCCTT----TCCCBSSHHHHHHHHHHCSTGGGEEG--GGTEECSSHHHHHHHHHHTSC
T ss_pred CccCCC----CCCccCCHHHHHHHHHcCCCCCccCc--cccchhCCHHHHHHHHHHHcC
Confidence 455653 6665543 445566643334678886 487664 57799999987775
No 116
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=69.31 E-value=1.7 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=23.4
Q ss_pred hhcCCceeeeccccCccccccccccCCCceeccccccc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
+..|.+.|.||+|...|.--. .. |-.+|..|...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~~---~~-~~LiC~~cg~~ 35 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLSA---DK-TELISKGAGLA 35 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEECT---TS-SEEEETTTTEE
T ss_pred ChHHHhheeCCCCCCcCeEeC---CC-CEEEcCCCCcE
Confidence 456889999999999887422 23 66777766443
No 117
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=68.23 E-value=2.6 Score=43.58 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=51.9
Q ss_pred hcCCceeeeccccCccccccccccCCC-ceecccccccc----CCCCCCccCCccc-ccccHHHHHhhhcc
Q psy12127 15 ELIASISECGVCLEPLDRGITSCQTCG-NLVCTSCAARL----LKCPFCRITIDYS-WQRNVALERIFTKL 79 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~l~~Pv~qC~~CG-H~~C~~C~~~l----~~CP~Cr~~~~~~-~~rn~~le~~v~~l 79 (263)
.++.+.|.|||=.++|.+||.. ++ | +++=++.+.++ ..||.=|.++... ..+|.+|+..|++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVil-ps-G~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVIL-PA-SKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEEC-TT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEc-CC-CCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHH
Confidence 5678999999999999999976 44 6 68999999885 3799888888743 67899999988764
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.92 E-value=2.4 Score=35.99 Aligned_cols=32 Identities=25% Similarity=0.682 Sum_probs=25.5
Q ss_pred eeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 20 ISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 20 ~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
.-.|++|...+..- -.-|..||++||+.|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45899999887632 256999999999999765
No 119
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=67.40 E-value=2.5 Score=28.45 Aligned_cols=30 Identities=30% Similarity=0.764 Sum_probs=22.0
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecc--ccc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCT--SCA 49 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~--~C~ 49 (263)
+..+.+.|.||+|...|.-- . |..+|. .|.
T Consensus 4 d~~lL~iL~CP~c~~~L~~~-----~-~~L~C~~~~c~ 35 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEER-----D-AELICTGQDCG 35 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEEE-----T-TEEEECSSSCC
T ss_pred CHHHHhheeCCCCCCcceec-----C-CEEEcCCcCCC
Confidence 56788999999999987631 2 666666 553
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.58 E-value=2.9 Score=30.99 Aligned_cols=44 Identities=23% Similarity=0.650 Sum_probs=34.3
Q ss_pred eeeeccccCccc-----cccccccCCCceecccccccc-----CCCCCCccCCc
Q psy12127 20 ISECGVCLEPLD-----RGITSCQTCGNLVCTSCAARL-----LKCPFCRITID 63 (263)
Q Consensus 20 ~l~CpIC~~~l~-----~Pv~qC~~CGH~~C~~C~~~l-----~~CP~Cr~~~~ 63 (263)
.-.|.||.+-+- .+...|..|+--+|+.|...- ..||.|.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999999754 244568889999999998753 48999998764
No 121
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=66.25 E-value=2.2 Score=32.64 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=32.8
Q ss_pred ceeeeccccCcccc--ccccccCCCceecccccccc--C--CCCCCccCCc
Q psy12127 19 SISECGVCLEPLDR--GITSCQTCGNLVCTSCAARL--L--KCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~--Pv~qC~~CGH~~C~~C~~~l--~--~CP~Cr~~~~ 63 (263)
+-|.|..|..+|.. ..+.-.. |..+|..|..++ . .|..|.++|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~-g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKL-GRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEET-TEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEEC-CEEeecCchhhhCCCccChhhcCCccC
Confidence 44789999999853 2223356 999999998875 3 7999999875
No 122
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=66.02 E-value=3.3 Score=37.87 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=30.5
Q ss_pred CceeeeccccCcccc---ccccccCCCceeccccccccCCC
Q psy12127 18 ASISECGVCLEPLDR---GITSCQTCGNLVCTSCAARLLKC 55 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~---Pv~qC~~CGH~~C~~C~~~l~~C 55 (263)
...-.|.+|...+.- .-++|..||..+|..|..++..|
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~C 395 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPC 395 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCCC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCCC
Confidence 455689999998863 34679999999999999987644
No 123
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=64.87 E-value=6.5 Score=25.35 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=30.6
Q ss_pred ceeeecc-chhhhhhcc-c--CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDK-C--KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C--~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|+..+.. ..+..|... - .-+++.|+ .|+... ....|..|++..|.
T Consensus 16 C~k~f~~~~~l~~H~~~~H~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCP--FCFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TCCEESSHHHHHHHHHHHSSSSCCCEECT--TTCCEESCHHHHHHHHHHHTC
T ss_pred CcchhCCHHHHHHHHHHHcCCCCcCeECC--CCCCccCCHHHHHHHHHHHcC
Confidence 6665543 445666643 2 45788896 487764 67789999998885
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.13 E-value=3.2 Score=35.49 Aligned_cols=31 Identities=26% Similarity=0.809 Sum_probs=24.7
Q ss_pred eeeccccCccccc--cccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
-.|.+|...+..= -..|..||.+||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4899999877632 256999999999999764
No 125
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=63.83 E-value=4.6 Score=32.88 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=25.8
Q ss_pred eeeccccCccccccccccCCCceecccccccc--CCCCCCccCCc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRITID 63 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~~~ 63 (263)
|.|..|..+|..-.+. .. |..+|..|..++ .+|..|+.+|.
T Consensus 88 F~C~~C~~~L~~~~f~-~~-g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFS-RG-ESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEE-ET-TEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred CccCCCCCccCCCcee-EC-CEeeecCccccccccccccCCCccC
Confidence 5666677766643332 45 777777776664 36777777664
No 126
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=63.66 E-value=5.8 Score=30.22 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=37.1
Q ss_pred cceecCCCCCCCceeeecc-chhhhhhccc-CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 78 KLELPCRNFRFGCKVYLPK-AKRDKHEDKC-KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.-.+.|+. .+|+..+.. ..+..|+..= .-+++.|+..+|+... ...+|..|+...|.
T Consensus 65 ~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~ 124 (155)
T 2gli_A 65 EKPHKCTF--EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124 (155)
T ss_dssp CCCCCCCS--TTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred CCCccCCC--CCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence 34566764 268777654 4567776532 2367888766788774 56788888866665
No 127
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.02 E-value=3.8 Score=28.24 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=32.5
Q ss_pred ceeeeccccCccccccccccCCCceecc-cccccc--CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCT-SCAARL--LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~-~C~~~l--~~CP~Cr~~~~ 63 (263)
+-|.|..|..+|..-.+.-.+ |..+|. .|..++ .+|..|.+.+.
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~-g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHE-GKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEET-TEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCceECcC-CeEeeCHHHHHHHhCccCCCcCCcee
Confidence 457899999998863233356 999999 698875 48988887653
No 128
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=62.76 E-value=8.6 Score=25.29 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=34.8
Q ss_pred eecCCCCCCCceeeecc-chhhhhhc-ccCCceecCCCCCCCCcc-ChhhHHHHHhc
Q psy12127 80 ELPCRNFRFGCKVYLPK-AKRDKHED-KCKFRQLKCPMHACPWTN-SVLHLSEHLNQ 133 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~ 133 (263)
.+.|.. .||...+.. ..+..|+. --.-+++.|+...|+... ....|..|++.
T Consensus 17 ~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~ 71 (72)
T 2epa_A 17 SHICSH--PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71 (72)
T ss_dssp CEECSS--TTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred ceeCCC--CCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence 456764 378887754 45667764 234578899766788775 56788888753
No 129
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=62.46 E-value=5.8 Score=28.50 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=35.0
Q ss_pred ceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 79 LELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
-.+.|+. |...+.. ..+..|+.. -.-+++.|+ .|+... ....|..|++..|+
T Consensus 36 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 36 RPYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp CSEECTT----TSCEESSSHHHHHHHTTTCCCCCEECS--SSCCEESCHHHHHHHHHHHHH
T ss_pred cCccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCC--CCcchhcCHHHHHHHHHHccc
Confidence 4466764 7766544 446667653 233678896 488774 57899999998886
No 130
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=62.00 E-value=7.9 Score=28.26 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=39.0
Q ss_pred cceecCCCCCCCceeeecc-chhhhhhccc-CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 78 KLELPCRNFRFGCKVYLPK-AKRDKHEDKC-KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.-.+.|+ -|+..+.. ..+..|+..- .-+++.|+..+|+... ....|..|+...+.
T Consensus 32 ~~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 89 (124)
T 1ubd_C 32 PRVHVCA----ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89 (124)
T ss_dssp CCCEECT----TTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred CCCeECC----CCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence 3456776 48887755 5677887642 3467899876898875 67789999887665
No 131
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=61.82 E-value=3.9 Score=28.41 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=30.5
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc-CCCCCCccC
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-LKCPFCRIT 61 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~ 61 (263)
..-.|..|..-+.-+.++| .||..||+.=+... ..|+..-+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~C~fDyk~ 56 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGSHRYPEVHGCTFDFKS 56 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTTTCSTTTTTCCCCCSC
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccccCCcccCCCCchhhH
Confidence 4568999999766555899 59999999876653 367755443
No 132
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=60.01 E-value=8 Score=28.26 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=29.1
Q ss_pred cCCceeeecc--ccCccccccccccCCCceecccccccc-CCCCC
Q psy12127 16 LIASISECGV--CLEPLDRGITSCQTCGNLVCTSCAARL-LKCPF 57 (263)
Q Consensus 16 ~l~~~l~CpI--C~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~ 57 (263)
.......|.. |......| +.|..||..||..=+... ..|+.
T Consensus 21 ~~~~~~~C~~~~Ck~~~~l~-f~C~~C~~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDVELVA-VICPYCEKNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp SCSCCEECCSTTCCCEESSC-EECTTTCCEECGGGCSTGGGTCSS
T ss_pred cCCCCCCCCCcCCCCCCccc-eECCCCCcccccccCCccCCCCCC
Confidence 3456678999 99887766 589999999998633322 25653
No 133
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=59.78 E-value=3.7 Score=28.87 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=24.0
Q ss_pred hhcCCceeeeccccCccccccccccCCCceeccccccc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
+..|.+.|.||+|...|.--. .. |-.+|..|...
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~---~~-~~LiC~~cg~~ 35 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLEFQR---AQ-AELVCNADRLA 35 (70)
T ss_dssp CCCCCCCCBCTTTCCBEEEET---TT-TEEEETTTTEE
T ss_pred ChHHhhheECCCCCCcCEEeC---CC-CEEEcCCCCce
Confidence 456889999999999887432 23 66777766443
No 134
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=59.51 E-value=4.5 Score=32.73 Aligned_cols=42 Identities=29% Similarity=0.774 Sum_probs=31.8
Q ss_pred ceeeeccccCccc---cccccccCCCceeccccccccC-----CCCCCcc
Q psy12127 19 SISECGVCLEPLD---RGITSCQTCGNLVCTSCAARLL-----KCPFCRI 60 (263)
Q Consensus 19 ~~l~CpIC~~~l~---~Pv~qC~~CGH~~C~~C~~~l~-----~CP~Cr~ 60 (263)
+.-.|.+|..+|. ++-.+|..|.|.+|..|...+. .|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 4678999999864 4446899999999999985542 4666665
No 135
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=58.97 E-value=10 Score=27.32 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=26.9
Q ss_pred cceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHh
Q psy12127 78 KLELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLN 132 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~ 132 (263)
.-.+.|+ -|+..+.. ..+..|+.. -.-+++.|+...|+... ...+|..|++
T Consensus 64 ~~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~ 117 (119)
T 2jp9_A 64 VKPFQCK----TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117 (119)
T ss_dssp CCCEECT----TTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred CCCccCC----ccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHh
Confidence 3445665 36666543 445555532 12345667444566653 4556667765
No 136
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=58.69 E-value=9.4 Score=31.69 Aligned_cols=42 Identities=21% Similarity=0.521 Sum_probs=31.4
Q ss_pred eeccccCccccc-----cccccCCCceeccccccc---------------cCCCCCCccCCc
Q psy12127 22 ECGVCLEPLDRG-----ITSCQTCGNLVCTSCAAR---------------LLKCPFCRITID 63 (263)
Q Consensus 22 ~CpIC~~~l~~P-----v~qC~~CGH~~C~~C~~~---------------l~~CP~Cr~~~~ 63 (263)
.||||..+..+. +.||..|...|=..|..- .-.||.|+..-+
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 599999987643 679999998887777532 127999998654
No 137
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=58.37 E-value=3.4 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=23.3
Q ss_pred hhcCCceeeeccccCccccccccccCCCceecccccc
Q psy12127 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAA 50 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~ 50 (263)
+..|.+.|.||+|...|.--. .. |-.+|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~---~~-~~LiC~~cg~ 34 (68)
T 2hf1_A 2 DAKFLEILVCPLCKGPLVFDK---SK-DELICKGDRL 34 (68)
T ss_dssp CCCCEEECBCTTTCCBCEEET---TT-TEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCeEeC---CC-CEEEcCCCCc
Confidence 456789999999999887432 23 6677766644
No 138
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=58.36 E-value=11 Score=25.47 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=23.3
Q ss_pred eecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHh
Q psy12127 80 ELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLN 132 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~ 132 (263)
.+.|++ .+|+..+.. ..+..|... -.-+++.|+ .|+... ...+|..|++
T Consensus 35 ~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~ 86 (89)
T 2wbs_A 35 PYHCDW--DGCGWKFARSDELTRHYRKHTGHRPFQCQ--KCDRAFSRSDHLALHMK 86 (89)
T ss_dssp CEECCS--TTTCCEESSHHHHHHHHHHHHCCCCEECS--SSSCEESSHHHHHHHGG
T ss_pred CcCCCC--CCCCCccCCHHHHHHHHHHcCCCCCccCC--CCCcccCCHHHHHHHHH
Confidence 345542 146655533 334455431 122456664 355543 4556666654
No 139
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.24 E-value=11 Score=27.22 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=26.7
Q ss_pred cchhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 96 KAKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 96 ~~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
...+..|+.. -.-+++.|+ .|+... ....|..|++..|.
T Consensus 65 ~~~l~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~hh~ 105 (115)
T 2dmi_A 65 KRSLLEMEGKEDAQKVLKCM--YCGHSFESLQDLSVHMIKTKH 105 (115)
T ss_dssp CCCCCCCCCSCCCCSSCBCS--SSCCBCSSHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccCCCcceECC--CCCCccCCHHHHHHHHHHhCC
Confidence 3455566542 234688896 587774 57899999998876
No 140
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=57.57 E-value=13 Score=29.43 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=45.4
Q ss_pred CC--CCCccCCcccccccHH--HHHhhhcceecCCCCCCCceeeecc-chhhhhh-ccc--CCceecCCCCCCCCcc-Ch
Q psy12127 54 KC--PFCRITIDYSWQRNVA--LERIFTKLELPCRNFRFGCKVYLPK-AKRDKHE-DKC--KFRQLKCPMHACPWTN-SV 124 (263)
Q Consensus 54 ~C--P~Cr~~~~~~~~rn~~--le~~v~~l~v~C~~~~~GC~~~~~~-~~~~~He-~~C--~~~~~~CP~~~C~~~g-~~ 124 (263)
.| +.|...+. ...++. +..-...-.+.|+. .+|+..+.. ..+..|. ..- .-.++.|+...|+... ..
T Consensus 44 ~C~~~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~ 119 (190)
T 1tf6_A 44 PCKEEGCEKGFT--SLHHLTRHSLTHTGEKNFTCDS--DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKH 119 (190)
T ss_dssp CCSSTTCCCCCS--SHHHHHHHHTTTTTCCCEECCS--SSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSH
T ss_pred cCCCCCCChhhC--CHHHHHHHHHHccCCCceeCCC--CCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCH
Confidence 68 77887765 222211 11111233466653 158877654 5567776 322 2456788655787764 57
Q ss_pred hhHHHHHhcccC
Q psy12127 125 LHLSEHLNQVHH 136 (263)
Q Consensus 125 ~~L~~Hl~~~H~ 136 (263)
..|..|+...+.
T Consensus 120 ~~L~~H~~~H~~ 131 (190)
T 1tf6_A 120 NQLKVHQFSHTQ 131 (190)
T ss_dssp HHHHHHHGGGSS
T ss_pred HHHHHHHHHhCC
Confidence 788889876554
No 141
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.34 E-value=11 Score=24.97 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=32.8
Q ss_pred ecCCCCCCCceeeecc-chhhhhhc-cc-CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 81 LPCRNFRFGCKVYLPK-AKRDKHED-KC-KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 81 v~C~~~~~GC~~~~~~-~~~~~He~-~C-~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
+.|.. .+|+..+.. .++..|+. .- .-+++.|+.++|+... ....|..|+...+.
T Consensus 8 ~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 8 MPCDF--PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp EECSS--TTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred ccCCC--CCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence 44553 257776644 44556654 22 2467788766687764 56788888875443
No 142
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=57.08 E-value=4.8 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.472 Sum_probs=32.3
Q ss_pred hhcCCceeeeccccCc-cccccccccCCCceecc-ccccccCCCCCCccCC
Q psy12127 14 KELIASISECGVCLEP-LDRGITSCQTCGNLVCT-SCAARLLKCPFCRITI 62 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~-l~~Pv~qC~~CGH~~C~-~C~~~l~~CP~Cr~~~ 62 (263)
...+...-.|.||..- -.+.-|.|+.||-.+|+ .|.+.+. .|.+.+
T Consensus 5 ~s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk---~Cse~F 52 (59)
T 1x4s_A 5 SSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG---TCAENF 52 (59)
T ss_dssp CSSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHC---CGGGGT
T ss_pred CCCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHh---HhCHHH
Confidence 3455666789999863 23445889999999998 7877765 355544
No 143
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=56.86 E-value=13 Score=25.19 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=32.7
Q ss_pred cceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhccc
Q psy12127 78 KLELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVH 135 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H 135 (263)
.-.+.|+. |+..+.. ..+..|+.. -.-+++.|+ .|+... ....|..|++..+
T Consensus 32 ~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~ 86 (90)
T 1a1h_A 32 QKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHTKIHL 86 (90)
T ss_dssp CCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECT--TTCCEESSHHHHHHHHGGGG
T ss_pred CCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCC--CCCchhCCHHHHHHHHHHhc
Confidence 34566764 7666544 445566542 234678886 487774 5778999988654
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.38 E-value=5.1 Score=31.65 Aligned_cols=34 Identities=29% Similarity=0.743 Sum_probs=27.1
Q ss_pred ceeeeccccCccc---cccccccCCCceecccccccc
Q psy12127 19 SISECGVCLEPLD---RGITSCQTCGNLVCTSCAARL 52 (263)
Q Consensus 19 ~~l~CpIC~~~l~---~Pv~qC~~CGH~~C~~C~~~l 52 (263)
+.-.|.+|..++. .+-.+|..|.|.+|..|....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4567999999884 234689999999999997754
No 145
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=56.33 E-value=17 Score=27.66 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=33.4
Q ss_pred Cceeeecc-chhhhhhccc-CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 89 GCKVYLPK-AKRDKHEDKC-KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 89 GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
-|...+.. ..+..|+..= .-+++.|+..+|+... ....|..|+...+.
T Consensus 67 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~ 117 (155)
T 2rpc_A 67 REGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117 (155)
T ss_dssp TSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCS
T ss_pred CcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCC
Confidence 37776654 4566776531 2367899876798875 67899999987665
No 146
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.30 E-value=8.2 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.438 Sum_probs=32.8
Q ss_pred cccccchhcCC---ceeeeccccCccccccccccCCCcee--ccccccccCCCCCCccCCc
Q psy12127 8 ECCANCKELIA---SISECGVCLEPLDRGITSCQTCGNLV--CTSCAARLLKCPFCRITID 63 (263)
Q Consensus 8 ~~~~~~~~~l~---~~l~CpIC~~~l~~Pv~qC~~CGH~~--C~~C~~~l~~CP~Cr~~~~ 63 (263)
..||.+..+|. ....|.-|..-+..-. -|+.||.-. |..|-..---|+.|.+-++
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~a-fCPeCgq~Le~lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFSLQA-LCPDCRQPLQVLKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEEEEE-ECSSSCSCCCEEEETTEEEECCTTTTCCCC
T ss_pred CCCCCCCCccccCCCceECccccccCCCcc-cCcchhhHHHHHHhcCCcCeeeccCCCEee
Confidence 45677665552 3455777777655432 466666653 6666444336777777665
No 147
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.25 E-value=6.1 Score=28.20 Aligned_cols=43 Identities=19% Similarity=0.422 Sum_probs=31.2
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc-CCCCCCccCC
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-LKCPFCRITI 62 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~~ 62 (263)
..-.|..|..-+.-+.++| .||..||+.=+... ..|+..-+..
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGTHRYPESHECQFDFKGV 67 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTTTCSTTTSCCCSCTTSC
T ss_pred cCccchhhcCcccccceEe-ccCCEeccccCCCcCCCCcCchhHH
Confidence 4567999997766656899 69999999876653 3677655443
No 148
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=54.90 E-value=13 Score=25.68 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=31.9
Q ss_pred CceeeeccccCccccccccccCCCceecccccccc-CCCCCCccCC
Q psy12127 18 ASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-LKCPFCRITI 62 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~~ 62 (263)
...-.|..|..-+.-+.++| .||..||..=+... ..|+..-+..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~ 57 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEV 57 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCS
T ss_pred CcCCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHH
Confidence 34568999999766555899 69999999876653 3677665544
No 149
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.82 E-value=4.4 Score=30.83 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=32.2
Q ss_pred eeeccccCccc---cccccccCCCceecccccccc--C--CCCCCccCCc
Q psy12127 21 SECGVCLEPLD---RGITSCQTCGNLVCTSCAARL--L--KCPFCRITID 63 (263)
Q Consensus 21 l~CpIC~~~l~---~Pv~qC~~CGH~~C~~C~~~l--~--~CP~Cr~~~~ 63 (263)
|.|..|..+|. ...+. .. |..+|..|..++ . +|..|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~-~~-g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYT-KS-GMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEE-ET-TEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEE-EC-CeeecHHHHHHHcCCCCccccCCCCcC
Confidence 68999999996 23332 56 999999998875 3 8999999886
No 150
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=54.45 E-value=6.7 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=16.2
Q ss_pred CCceeeeccccCccccccccccCCCc
Q psy12127 17 IASISECGVCLEPLDRGITSCQTCGN 42 (263)
Q Consensus 17 l~~~l~CpIC~~~l~~Pv~qC~~CGH 42 (263)
...+..||.|.++ .-|-..|.+||.
T Consensus 27 ~p~l~~c~~cG~~-~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGK-KLSHHICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCE-ECTTBCCTTTCB
T ss_pred CCCceECCCCCCE-eCCceEcCCCCc
Confidence 4566778888886 444556666664
No 151
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=53.75 E-value=6.4 Score=28.18 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=9.0
Q ss_pred hhcCCceeeecccc
Q psy12127 14 KELIASISECGVCL 27 (263)
Q Consensus 14 ~~~l~~~l~CpIC~ 27 (263)
.+.+...+.||||.
T Consensus 11 ~~~~~~tWVCpICs 24 (76)
T 2j9u_B 11 SADVVSTWVCPICM 24 (76)
T ss_dssp ----CEEEECTTTC
T ss_pred ccccccceECcccc
Confidence 45567889999998
No 152
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=53.64 E-value=17 Score=25.21 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=32.3
Q ss_pred ceecCCCCCCCceeeecc-chhhhhhc-ccCCceecCCCCCCCCcc-ChhhHHHHHhcc
Q psy12127 79 LELPCRNFRFGCKVYLPK-AKRDKHED-KCKFRQLKCPMHACPWTN-SVLHLSEHLNQV 134 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~-~~~~~He~-~C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~ 134 (263)
-.+.|++ .+|...+.. ..+..|+. --.-+++.|+ .|+... ....|..|++..
T Consensus 44 ~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 44 KPYKCTW--EGCDWRFARSDELTRHYRKHTGAKPFQCG--VCNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp CCEECCS--SSCCCEESSHHHHHHHHHHHTSCCSCBCS--SSCCBCSSHHHHHHHHHHH
T ss_pred CCeeCCC--CCCCCccCCHHHHHHHHHHhCCCCCeECC--CCcCccCCHHHHHHHHHHh
Confidence 4566753 257776644 44566664 2234678886 477664 567888897754
No 153
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.62 E-value=6.3 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.9
Q ss_pred hcccCCceecCCCCCCCCccChhhHHHHHhcccC
Q psy12127 103 EDKCKFRQLKCPMHACPWTNSVLHLSEHLNQVHH 136 (263)
Q Consensus 103 e~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~~H~ 136 (263)
++.|+.+|+.|+ .|+.......|..|+.. +.
T Consensus 3 ~~~C~~~~~~C~--~C~k~f~~~~L~~H~~~-~~ 33 (66)
T 2eod_A 3 SGSSGKRTQPCT--YCTKEFVFDTIQSHQYQ-CP 33 (66)
T ss_dssp SSCCCCCEEECS--SSCCEEEHHHHHHHHHH-CS
T ss_pred cccCCCCCeecc--ccCCccCHHHHHHHHHH-cC
Confidence 358999999996 48777668899999887 54
No 154
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=52.66 E-value=3.8 Score=33.62 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=33.3
Q ss_pred ceeeeccccCcccc---ccccccCCCceecccccccc--C--CCCCCccCCc
Q psy12127 19 SISECGVCLEPLDR---GITSCQTCGNLVCTSCAARL--L--KCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~---Pv~qC~~CGH~~C~~C~~~l--~--~CP~Cr~~~~ 63 (263)
+-|.|..|...|.. +.+ -.. |..+|..|..++ . .|..|.++|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~-~~~-g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSY-TKS-GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEE-EET-TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEE-EeC-CccccccccccccccCCccccCCCccc
Confidence 34789999999875 433 356 999999998875 3 5999999875
No 155
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.32 E-value=9.4 Score=27.15 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=5.1
Q ss_pred eeccccCccc
Q psy12127 22 ECGVCLEPLD 31 (263)
Q Consensus 22 ~CpIC~~~l~ 31 (263)
.|+.|.+++.
T Consensus 27 ~C~~C~~~I~ 36 (90)
T 2dar_A 27 MCAHCNQVIR 36 (90)
T ss_dssp BBSSSCCBCC
T ss_pred CCccCCCEec
Confidence 4555555444
No 156
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=51.77 E-value=0.6 Score=32.78 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=32.7
Q ss_pred cceecCCCCCCCceeeecc-chhhhhhcccCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 78 KLELPCRNFRFGCKVYLPK-AKRDKHEDKCKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 78 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.-.+.|+. |+..+.. ..+..|...---.++.|+ .|+... ....|..|++..|+
T Consensus 29 ~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~--~C~~~f~~~~~L~~H~~~~h~ 83 (88)
T 1llm_C 29 EKPFACDI----CGRKFARSDERKRHRDIQHILPILED--KVEELLSKNYHLENEVARLKK 83 (88)
T ss_dssp CCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHH--HHHHHHHHHhhhHHHHHHHHH
Confidence 34566663 7766644 456667654334666775 465543 56678888888775
No 157
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=50.38 E-value=16 Score=19.33 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=18.1
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhcc
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQV 134 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~~ 134 (263)
+|+.|+...|+... ....|..|+...
T Consensus 1 kp~~C~~~~C~k~f~~~~~L~~H~~~H 27 (31)
T 1sp2_A 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27 (31)
T ss_dssp CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred CCcCCcCCCCCcccCCHhHHHHHHHHh
Confidence 35677655787774 567888998653
No 158
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.30 E-value=8.1 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=16.3
Q ss_pred eeeccccCccccccccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
|.|..|..+|....+.-.+ |..+|..|..+
T Consensus 32 F~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 61 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARD-DFAYCLNCFCD 61 (70)
T ss_dssp SBCSSSCCBCTTSCCEESS-SSEECHHHHHH
T ss_pred CccCCCCCcCCcCceEeeC-CeEECHHHHHH
Confidence 5566666666543222234 66666666554
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.09 E-value=11 Score=25.87 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=25.2
Q ss_pred eeeeccccCccccccccccCCCceecccccccc--CCCCC
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPF 57 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~ 57 (263)
-|.|..|...|..-.+.-.. |..+|..|..++ ..|..
T Consensus 35 CF~C~~C~~~L~~~~f~~~~-g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 35 CFNCGKCSVSLVGKGFLTQN-KEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GCBCTTTCCBCSSSCEEEET-TEEEETTTTCCCCCCSSSS
T ss_pred cCChhhCCCcCCCCceEeEC-CEEECHHHhhhhhCCcCCC
Confidence 37888888888754333355 888999888775 35543
No 160
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=49.65 E-value=12 Score=29.53 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=9.9
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhc
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQ 133 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~ 133 (263)
+++.|+ .|+..- ....|..|++.
T Consensus 160 ~~~~C~--~C~~~f~~~~~L~~H~~~ 183 (190)
T 2i13_A 160 KPYKCP--ECGKSFSRRDALNVHQRT 183 (190)
T ss_dssp CCEECT--TTCCEESSHHHHHHHHTT
T ss_pred CCeECC--CCCCccCCHHHHHHHHHh
Confidence 344453 244442 33444555443
No 161
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=49.27 E-value=7.1 Score=31.30 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=33.6
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc--CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~~~ 63 (263)
+-|.|..|...|..-.+. .. |..+|..|..++ .+|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~-g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RG-ESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SS-SCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcc-cC-CeeeecccccccccccccccccccC
Confidence 447899999988865443 56 899999998875 58999998875
No 162
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.27 E-value=16 Score=24.36 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=29.5
Q ss_pred ceeeecc-chhhhhhc-ccC--CceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHED-KCK--FRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~-~C~--~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|...+.. ..+..|+. .-. -+++.|+ .|+... ....|..|++..|.
T Consensus 21 C~k~f~~~~~L~~H~~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~ 70 (77)
T 2ct1_A 21 CHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGVHLRKQHS 70 (77)
T ss_dssp TCCEESCHHHHHHHHHHHSSSSCSSEECS--SSSCEESSHHHHHHHHHHTSC
T ss_pred cCchhCCHHHHHHHHHHhcCCCCCccCCC--CCCCccCCHHHHHHHHHHhCC
Confidence 5555543 44556653 222 2578896 488774 57789999998886
No 163
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=48.34 E-value=12 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=19.0
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
+++.|+ .|+... ....|..|+...|+
T Consensus 31 ~~~~C~--~C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 31 KPYKCE--FCEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp CCEECS--SSSCEESSHHHHHHHHHHHC-
T ss_pred CCcCCC--CCcchhCCHHHHHHHHHHhcC
Confidence 578886 487764 67789999988774
No 164
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.72 E-value=12 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=20.2
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhcc
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQV 134 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~~ 134 (263)
+|+.|+..+|+... ....|..|++..
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~H 34 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKVH 34 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence 68899866899885 577888997653
No 165
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=47.70 E-value=11 Score=28.86 Aligned_cols=51 Identities=33% Similarity=0.610 Sum_probs=33.3
Q ss_pred eecCCCCCCCceeeecc-chhhhhhccc-CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 80 ELPCRNFRFGCKVYLPK-AKRDKHEDKC-KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.+.|+. |+..+.. ..+..|+..= .-+|+.|+ .|+..- ....|..|++..|.
T Consensus 50 ~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~hh~ 103 (133)
T 2lt7_A 50 KYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFINYQFMSSHIKSVHS 103 (133)
T ss_dssp CEECSS----SSCEESSHHHHHHHHHHHHTCCCEEES--SSCCEESSHHHHHHHHHHHTC
T ss_pred CeeCCc----cCeecccccchhhhccccCCCccccCC--CCCCCcCCHHHHHHHhHHhcC
Confidence 456653 7766654 4466666431 23678885 587774 67789999988885
No 166
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.22 E-value=13 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=22.8
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
+|+.|+..+|+... ....|..|++..|.
T Consensus 26 KPYkC~~~~CgKaFsr~s~L~~H~rriHT 54 (73)
T 1x3c_A 26 RPYRCVHQGCFAAFTIQQNLILHYQAVHK 54 (73)
T ss_dssp CSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred CCeECCCCCcChhHcCHHHHHHHhhhhCC
Confidence 78999887899886 57789999876664
No 167
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=45.87 E-value=8.6 Score=27.90 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=10.8
Q ss_pred CCceeeeccccCccc
Q psy12127 17 IASISECGVCLEPLD 31 (263)
Q Consensus 17 l~~~l~CpIC~~~l~ 31 (263)
....+.||-|...+.
T Consensus 24 q~~~y~Cp~CG~~~v 38 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRV 38 (83)
T ss_dssp HHSCEECSSSCCEEE
T ss_pred ccccCcCCCCCCcce
Confidence 346788999988544
No 168
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.29 E-value=9 Score=25.73 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=4.6
Q ss_pred eeeccccCccc
Q psy12127 21 SECGVCLEPLD 31 (263)
Q Consensus 21 l~CpIC~~~l~ 31 (263)
|.|..|..+|.
T Consensus 32 F~C~~C~~~L~ 42 (70)
T 2d8x_A 32 FRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCS
T ss_pred CEeCCCCCcCC
Confidence 34444444443
No 169
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=45.19 E-value=8.1 Score=28.91 Aligned_cols=49 Identities=18% Similarity=0.505 Sum_probs=38.2
Q ss_pred chhcCCceeeeccccCccccccccccCCCceecccccccc----CCCCCCccCCcc
Q psy12127 13 CKELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARL----LKCPFCRITIDY 64 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l----~~CP~Cr~~~~~ 64 (263)
.+..+-..+.|-.|---.+.=| .|. .|..|..|+..+ ..||.|..++.+
T Consensus 21 ~d~s~~G~~nCKsCWf~~k~LV-~C~--dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENKGLV-ECN--NHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCSSEE-ECS--SCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CCccccCcccChhhccccCCee-eec--chhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 4566677888999988777644 563 799999999885 379999998864
No 170
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.17 E-value=12 Score=34.67 Aligned_cols=60 Identities=20% Similarity=0.399 Sum_probs=43.0
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc--------CCCCCCccCCccc-ccccHHHHHhhhcc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--------LKCPFCRITIDYS-WQRNVALERIFTKL 79 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--------~~CP~Cr~~~~~~-~~rn~~le~~v~~l 79 (263)
=-|.||+=...|..|+.- ..|.|+-|-.=..-+ -.||.|.+.+... ..-+..+.++++++
T Consensus 248 vSL~CPlS~~ri~~PvRg-~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKS-INCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EESBCTTTSSBCSSEEEE-TTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EeecCCCccccccccCcC-CcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 458999999999999864 568998655432211 2899999987643 44577777777654
No 171
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.97 E-value=6.9 Score=26.43 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=15.5
Q ss_pred eeeccccCccccccccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
|.|..|...|..-.+.-.. |..+|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 63 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVE-RRAYCEGCYVA 63 (72)
T ss_dssp CBCSSSCCBCTTSCEEESS-SCEEEHHHHHH
T ss_pred CcccccCCcCCcCcCEeeC-CeEECHHHHHH
Confidence 5566666666432222234 56666666554
No 172
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.64 E-value=9.4 Score=25.28 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=4.1
Q ss_pred eeccccCccc
Q psy12127 22 ECGVCLEPLD 31 (263)
Q Consensus 22 ~CpIC~~~l~ 31 (263)
.|..|..+|.
T Consensus 33 ~C~~C~~~L~ 42 (66)
T 1nyp_A 33 VCAKCEKPFL 42 (66)
T ss_dssp BCTTTCCBCS
T ss_pred EECCCCCCCC
Confidence 3444444433
No 173
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.61 E-value=11 Score=26.77 Aligned_cols=41 Identities=24% Similarity=0.529 Sum_probs=28.9
Q ss_pred eeeeccccCccccccccccCCCceecccccccc-CCCCCCccC
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTSCAARL-LKCPFCRIT 61 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~ 61 (263)
.-.|..|..-+.-..+.|. ||..||+.=+... ..|+..-+.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKA 66 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGG
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhh
Confidence 3479999886554347898 9999999876553 367655443
No 174
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=44.42 E-value=21 Score=23.92 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=34.4
Q ss_pred ecCCCCCCCceeeecc-chhhhhhc-----cc---CCceecCCCCCCCCcc-ChhhHHHHHhccc
Q psy12127 81 LPCRNFRFGCKVYLPK-AKRDKHED-----KC---KFRQLKCPMHACPWTN-SVLHLSEHLNQVH 135 (263)
Q Consensus 81 v~C~~~~~GC~~~~~~-~~~~~He~-----~C---~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H 135 (263)
+.|... +|...+.- .++..|.. .= +-.++.|.-.+|++.+ ....|..|++..|
T Consensus 2 l~C~W~--~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 2 LKCKWK--ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCCCT--TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred CeEeeC--CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence 456664 67776543 44555642 11 1136788878999876 5779999998876
No 175
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.37 E-value=9.8 Score=31.08 Aligned_cols=28 Identities=21% Similarity=0.605 Sum_probs=20.0
Q ss_pred cccccccCCCceecccccccc-CCCCCCccCCc
Q psy12127 32 RGITSCQTCGNLVCTSCAARL-LKCPFCRITID 63 (263)
Q Consensus 32 ~Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~~~ 63 (263)
++.++|+.||++.= ... ..||.|..+-.
T Consensus 136 ~~~~~C~~CG~i~~----~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICPICGYTAV----DEAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECTTTCCEEE----SCCCSBCTTTCCBGG
T ss_pred CCeeEeCCCCCeeC----CCCCCCCCCCCCCHH
Confidence 45688999999863 233 38999987643
No 176
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.27 E-value=12 Score=25.09 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=14.7
Q ss_pred eeeccccCccccccccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
|.|..|..+|..-.+.-.. |..+|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 63 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDK-GAHYCVPCYEN 63 (72)
T ss_dssp CBCTTTCCBTTTSCEEEET-TEEEEHHHHHH
T ss_pred CeECCCCCcCCCCccCCcC-CeEECHHHHHH
Confidence 4555565555542222233 55566655544
No 177
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=43.86 E-value=30 Score=24.65 Aligned_cols=77 Identities=13% Similarity=0.313 Sum_probs=46.1
Q ss_pred CCCC--CccCCcccccccH--HHHHhhhcceecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-Chhh
Q psy12127 54 KCPF--CRITIDYSWQRNV--ALERIFTKLELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLH 126 (263)
Q Consensus 54 ~CP~--Cr~~~~~~~~rn~--~le~~v~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~ 126 (263)
.|+. |...+.. ..++ -+..-...-.+.|++. +|+..+.. ..+..|+.. =.-+++.|+ .|+... ....
T Consensus 8 ~C~~~~C~~~f~~--~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~ 81 (119)
T 2jp9_A 8 MCAYPGCNKRYFK--LSHLQMHSRKHTGEKPYQCDFK--DCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQRKFSRSDH 81 (119)
T ss_dssp CCCSTTSCCCBSC--HHHHHHHHHHHHTTCCEECCST--TCCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHH
T ss_pred eCCCCCCcchhCC--HHHHHHHHHhhCCCCCccCCCC--CCcCccCCHHHHHHHHHHcCCCCCccCC--ccCchhCCHHH
Confidence 5654 7766542 2221 1222223456777642 68887754 556777653 234678896 587774 6788
Q ss_pred HHHHHhcccC
Q psy12127 127 LSEHLNQVHH 136 (263)
Q Consensus 127 L~~Hl~~~H~ 136 (263)
|..|+...+.
T Consensus 82 l~~H~~~h~~ 91 (119)
T 2jp9_A 82 LKTHTRTHTG 91 (119)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999987655
No 178
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.34 E-value=9.5 Score=25.51 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=13.4
Q ss_pred eeeccccCccccccccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
|.|..|...|....+.=.+ |..+|..|..+
T Consensus 32 F~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 61 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVE-DQYYCVDCYKN 61 (69)
T ss_dssp TBCTTTCCBCTTSCEEECS-SCEEEHHHHHH
T ss_pred CEECCCCCCCCCCccEeEC-CEEECHHHhHH
Confidence 4455555555432221123 55555555444
No 179
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.92 E-value=12 Score=27.41 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=28.5
Q ss_pred eeeeccccCcccc--ccccccCCCceecccccccc-CCCCCCccC
Q psy12127 20 ISECGVCLEPLDR--GITSCQTCGNLVCTSCAARL-LKCPFCRIT 61 (263)
Q Consensus 20 ~l~CpIC~~~l~~--Pv~qC~~CGH~~C~~C~~~l-~~CP~Cr~~ 61 (263)
.-.|..|..-+.- | ++|. ||..||+.=+... ..|+..-+.
T Consensus 25 ~~rC~~C~kkvgl~~~-f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~ 67 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS-FECR-CGNNFCASHRYAEAHGCNYDYKS 67 (85)
T ss_dssp CCBCSSSCCBCSSSSC-EECT-TCCEECTTTCSTGGGTCCSCCSS
T ss_pred CccchhhCCeecccCC-eEcC-CCCEecccCCCccCCCCcchhhH
Confidence 3579999975554 5 6895 9999999876553 378765443
No 180
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.67 E-value=14 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=18.2
Q ss_pred cccccccCCCceeccccccccC-CCCCCccCC
Q psy12127 32 RGITSCQTCGNLVCTSCAARLL-KCPFCRITI 62 (263)
Q Consensus 32 ~Pv~qC~~CGH~~C~~C~~~l~-~CP~Cr~~~ 62 (263)
++.+.|.+||+.|=.. .... .||.|+.+.
T Consensus 71 p~~~~C~~CG~~~e~~--~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN--ALDYGVCEKCHSKN 100 (119)
T ss_dssp CCEEECSSSSCEECSC--CSTTCCCSSSSSCC
T ss_pred cceEEcCCCCCEEeCC--CCCCCcCccccCCC
Confidence 3456777777776331 2235 799998774
No 181
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.53 E-value=15 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=14.0
Q ss_pred eeeccccCccccccccccCCCceecc-ccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCT-SCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~-~C~~~ 51 (263)
|.|..|...|..-.+.-.+ |..+|. .|..+
T Consensus 37 F~C~~C~~~L~~~~~~~~~-g~~yC~~~cy~~ 67 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHD-GKPFCHKPCYAT 67 (76)
T ss_dssp CBCSSSCCBCCTTSCEEET-TEEECTTTHHHH
T ss_pred CCCCCCCCccCCCceEeEC-CEEecchHHHHH
Confidence 4555555555532222233 555555 45544
No 182
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=42.32 E-value=24 Score=18.65 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=17.7
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhcc
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQV 134 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~~ 134 (263)
+|+.|+...|+... ....|..|+...
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~H 28 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHHc
Confidence 46677644687664 567888997753
No 183
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.18 E-value=7.1 Score=29.34 Aligned_cols=37 Identities=30% Similarity=0.736 Sum_probs=23.9
Q ss_pred cccchhcCCceeeeccccCccccccccccCCCc--eecccccc
Q psy12127 10 CANCKELIASISECGVCLEPLDRGITSCQTCGN--LVCTSCAA 50 (263)
Q Consensus 10 ~~~~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH--~~C~~C~~ 50 (263)
|+++++++..+-.||-|..+|.. .+ .||- .||..|..
T Consensus 51 C~~C~~~f~~~a~CPdC~q~Lev--Lk--ACGAvdYFC~~chg 89 (101)
T 2jne_A 51 CRSCGEFIEMKALCPDCHQPLQV--LK--ACGAVDYFCQHGHG 89 (101)
T ss_dssp ETTTCCEEEEEEECTTTCSBCEE--EE--ETTEEEEEETTTTE
T ss_pred CccccchhhccccCcchhhHHHH--HH--HhcCcchhhccCCc
Confidence 66667777777777777777764 22 3553 47777754
No 184
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.76 E-value=5.5 Score=36.61 Aligned_cols=32 Identities=25% Similarity=0.709 Sum_probs=0.0
Q ss_pred eeeeccccCccccc--cccccCCCceeccccccc
Q psy12127 20 ISECGVCLEPLDRG--ITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 20 ~l~CpIC~~~l~~P--v~qC~~CGH~~C~~C~~~ 51 (263)
.-.|.+|...+..- -..|..||++||..|...
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 45799998877632 257999999999999754
No 185
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=41.36 E-value=12 Score=28.01 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=15.5
Q ss_pred hhcCCceeeeccccCcccc
Q psy12127 14 KELIASISECGVCLEPLDR 32 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~ 32 (263)
+..|.+.|-||+|..+|.-
T Consensus 2 d~~LLdILaCP~cK~pL~l 20 (97)
T 2k5r_A 2 DRKLLHLLCSPDTRQPLSL 20 (97)
T ss_dssp CTTTCSSCCCCTTSSCCEE
T ss_pred ChHHhhheECCCCCCcccc
Confidence 4568899999999987763
No 186
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.32 E-value=23 Score=25.31 Aligned_cols=55 Identities=22% Similarity=0.392 Sum_probs=39.8
Q ss_pred hhcceecCCCCCCCceeee--ccchhhhhhcccCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 76 FTKLELPCRNFRFGCKVYL--PKAKRDKHEDKCKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 76 v~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
...-.+.|+. |...+ ....+..|+....-+++.|+ .|+... ....|..|+...|.
T Consensus 30 ~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~--~Cgk~F~~~~~L~~H~~~~H~ 87 (96)
T 2ctd_A 30 VDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCH--HCGKQLRSLAGMKYHVMANHN 87 (96)
T ss_dssp HHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCS--SSCCCCSSHHHHHHHHHHHTC
T ss_pred cCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECC--CCCCeeCCHHHHHHHhHHhcC
Confidence 3456678875 99888 45778888865566788996 587765 56789999655664
No 187
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.89 E-value=12 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=14.8
Q ss_pred eeeccccCccccccccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
|.|..|...|..-.+.-.+ |..+|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 63 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKD-NQNFCVPCYEK 63 (72)
T ss_dssp TCCSSSCCCCCSSSEEEET-TEEEEHHHHHH
T ss_pred CcccccCCccCCCccCccC-CeEECHHHHhH
Confidence 4555565555543222233 55566655544
No 188
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.73 E-value=12 Score=25.29 Aligned_cols=37 Identities=27% Similarity=0.666 Sum_probs=21.4
Q ss_pred eeeeccccCccccccccccCCCceeccc--cccccCCCCCCccCC
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTS--CAARLLKCPFCRITI 62 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~--C~~~l~~CP~Cr~~~ 62 (263)
.-.||-|..++... ..|.|+.|.. |.. .-|-.|..+.
T Consensus 6 ~k~CP~C~~~Iek~----~GCnhmtC~~~~C~~--~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKD----GGCNHMVCRNQNCKA--EFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSC----CSCCSSSCCSSGGGS--CCSSSSCSCS
T ss_pred ceECcCCCCeeEeC----CCCCcEEECCCCcCC--EEeeCcCCCc
Confidence 34689998888764 2355665555 533 2355555444
No 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=40.68 E-value=25 Score=27.63 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred eecCCCCCCCceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 80 ELPCRNFRFGCKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
.+.|+. ..|+..+.. ..+..|+.. =.-+++.|+..+|+... ....|..|++..+.
T Consensus 104 ~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~ 161 (190)
T 1tf6_A 104 VYVCHF--ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161 (190)
T ss_dssp CCEECS--SSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred eeeCCC--CCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence 455622 258887654 556677653 23467888766688774 56788888876544
No 190
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.63 E-value=26 Score=22.70 Aligned_cols=45 Identities=29% Similarity=0.549 Sum_probs=29.1
Q ss_pred ceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|...+.. ..+..|+.. -.-+++.|+ .|+... ....|..|+...|.
T Consensus 15 C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~ 62 (70)
T 1x5w_A 15 CSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKFHG 62 (70)
T ss_dssp SSCEESSHHHHHHHHGGGCCSCSEECS--SSSCEESSHHHHHHHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHcCCCCCEeCC--CCCCccCCHHHHHHHHHHHhC
Confidence 5555543 445566543 234678886 487774 57789999988775
No 191
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.26 E-value=17 Score=33.48 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=42.0
Q ss_pred eeeeccccCccccccccccCCCceecccccccc--------CCCCCCccCCccc-ccccHHHHHhhhc
Q psy12127 20 ISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--------LKCPFCRITIDYS-WQRNVALERIFTK 78 (263)
Q Consensus 20 ~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--------~~CP~Cr~~~~~~-~~rn~~le~~v~~ 78 (263)
-|.||+=...+..|+.- ..|.|.-|-.=..-+ -.||.|.+.+... ..-+..+.+++++
T Consensus 215 SL~CPlS~~ri~~P~Rg-~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRA-VTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEE-TTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcC-CCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 57899999999999865 568998655432222 2899999988643 4557777777765
No 192
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.01 E-value=11 Score=26.26 Aligned_cols=41 Identities=27% Similarity=0.516 Sum_probs=29.9
Q ss_pred ceeeeccccCcccccc---ccccCCCceecccccccc-CCCCCCcc
Q psy12127 19 SISECGVCLEPLDRGI---TSCQTCGNLVCTSCAARL-LKCPFCRI 60 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv---~qC~~CGH~~C~~C~~~l-~~CP~Cr~ 60 (263)
..-.|..|..-+.-+- +.| .||..||+.=+... ..|+..-+
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk 58 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHM 58 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSS
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhccCCccccCCccccc
Confidence 3457999999888773 789 79999999866543 25665544
No 193
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.44 E-value=13 Score=25.62 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=6.6
Q ss_pred eeccccCccc
Q psy12127 22 ECGVCLEPLD 31 (263)
Q Consensus 22 ~CpIC~~~l~ 31 (263)
.|+.|.+++.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 1x63_A 17 KCKGCFKAIV 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCcccc
Confidence 5666666666
No 194
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=38.42 E-value=11 Score=31.21 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=18.7
Q ss_pred cccccCCCceecccccccc-CCCCCCccCC
Q psy12127 34 ITSCQTCGNLVCTSCAARL-LKCPFCRITI 62 (263)
Q Consensus 34 v~qC~~CGH~~C~~C~~~l-~~CP~Cr~~~ 62 (263)
.++|..||+++=+. .. ..||.|+.+-
T Consensus 155 ~~~C~~CG~~~~g~---~~p~~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYVHEGT---GAPELCPACAHPK 181 (191)
T ss_dssp EEEETTTCCEEEEE---ECCSBCTTTCCBG
T ss_pred eEEECCCCCEeeCC---CCCCCCCCCcCCH
Confidence 68899999986432 23 3899999864
No 195
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.17 E-value=15 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.631 Sum_probs=17.4
Q ss_pred cccccCCCceeccccccccC--CCCCCccCC
Q psy12127 34 ITSCQTCGNLVCTSCAARLL--KCPFCRITI 62 (263)
Q Consensus 34 v~qC~~CGH~~C~~C~~~l~--~CP~Cr~~~ 62 (263)
++.|..||+.|=.+=.+.+. +||.|+-.+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 46677777777544444442 799887654
No 196
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.07 E-value=15 Score=25.30 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=6.1
Q ss_pred CCCCCccCCc
Q psy12127 54 KCPFCRITID 63 (263)
Q Consensus 54 ~CP~Cr~~~~ 63 (263)
+||.|+-.+-
T Consensus 40 RC~~CG~RIL 49 (63)
T 3h0g_L 40 RCRECGHRVM 49 (63)
T ss_dssp CCSSSCCCCC
T ss_pred ECCCCCcEEE
Confidence 6777765543
No 197
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.86 E-value=13 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.506 Sum_probs=21.6
Q ss_pred ceeeecc--ccCccccccccccCCCceeccc
Q psy12127 19 SISECGV--CLEPLDRGITSCQTCGNLVCTS 47 (263)
Q Consensus 19 ~~l~CpI--C~~~l~~Pv~qC~~CGH~~C~~ 47 (263)
..-.|.. |...-..| +.|..||..||..
T Consensus 11 ~~~~Cs~~~Ck~~~ll~-f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMK-LTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSC-CBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCCCccc-eECCCCCcccCcc
Confidence 3457888 98775566 5899999999975
No 198
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=37.38 E-value=16 Score=25.28 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=33.7
Q ss_pred hhcCCceeeeccccCcccc-ccccccCCCceecccccccc--------CCCCCCccCCc
Q psy12127 14 KELIASISECGVCLEPLDR-GITSCQTCGNLVCTSCAARL--------LKCPFCRITID 63 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~~l~~-Pv~qC~~CGH~~C~~C~~~l--------~~CP~Cr~~~~ 63 (263)
+++-.+...|++|...-.. .+.+|..|...|=..|+... -.||.|+..+.
T Consensus 12 ~~~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 12 DEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CSSSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cccCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4445567789999987543 46788888877666776431 15888876553
No 199
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=36.31 E-value=18 Score=34.79 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=30.2
Q ss_pred CceeeeccccCccc---cccccccCCCceeccccccccCCCCCCccC
Q psy12127 18 ASISECGVCLEPLD---RGITSCQTCGNLVCTSCAARLLKCPFCRIT 61 (263)
Q Consensus 18 ~~~l~CpIC~~~l~---~Pv~qC~~CGH~~C~~C~~~l~~CP~Cr~~ 61 (263)
...-.|.+|...+. ..-++|..||-.+|..|...+. .|+..
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v~---~C~~~ 570 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP---PCGRH 570 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGSC---CC---
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcCC---CCCCC
Confidence 44567999999874 3457899999999999999874 45443
No 200
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.98 E-value=16 Score=32.73 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=30.3
Q ss_pred CceeeeccccCccccccccc---cCCC--ceecccccccc----CCCCCCccC
Q psy12127 18 ASISECGVCLEPLDRGITSC---QTCG--NLVCTSCAARL----LKCPFCRIT 61 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv~qC---~~CG--H~~C~~C~~~l----~~CP~Cr~~ 61 (263)
...-.||+|...-.--+..= .. | +..|+-|-..+ .+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~-G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKET-GLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----C-CEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCC-CcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45678999998766443220 23 5 47999998886 389999875
No 201
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=35.77 E-value=11 Score=26.20 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=21.9
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc--CCCCCCcc
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRI 60 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~ 60 (263)
+=|.|..|...|..-.+.-.+ |..+|..|..++ .+|-.|..
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~~f~~~c~gcg~ 75 (81)
T 1a7i_A 33 CCFLCMVCRKNLDSTTVAIHD-AEVYCKSCYGKKYGPKGYGYGQ 75 (81)
T ss_dssp SSEECSSSCCEECSSCCEEET-TEEECSHHHHHHCC--------
T ss_pred ccCccCCCCCCCCCCCeEeeC-CEEECHHHHHHHhCCcccccCC
Confidence 346788888877654333345 778888887765 35665554
No 202
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=35.53 E-value=15 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=22.6
Q ss_pred eeeccccCccccccccccCCCceecccccccc--CCCCCCccCCc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRITID 63 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~~~ 63 (263)
|.|..|...|..-.+.=.+ |..+|..|..++ .+|..|..+++
T Consensus 143 F~C~~C~~~L~~~~~~~~~-g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKD-GEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CBCTTTCCBCCSSSEEEET-TEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCccccCCCCCCCcccccC-CEEeCHHHHHHhcCCcCCCCCCccc
Confidence 5566666666432222234 666666666554 36666665543
No 203
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=35.40 E-value=11 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=20.7
Q ss_pred ceecCCCCCCCceeeeccchhhhhhcccCCc
Q psy12127 79 LELPCRNFRFGCKVYLPKAKRDKHEDKCKFR 109 (263)
Q Consensus 79 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~ 109 (263)
-.+.||| .-.-.+...++..|...|.-+
T Consensus 4 ~~v~CPy---d~~H~i~~~~l~~Hl~kC~~r 31 (37)
T 2vy4_A 4 EVVICPY---DSNHHMPKSSLAKHMASCRLR 31 (37)
T ss_dssp CCEECTT---TSSCEECGGGHHHHHHHHHHH
T ss_pred eEEECCC---CCCeEeCHHHHHHHHHHHhhh
Confidence 3577887 467788888888888877643
No 204
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=35.35 E-value=25 Score=17.78 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=15.3
Q ss_pred eecCCCCCCCCcc-ChhhHHHHHhc
Q psy12127 110 QLKCPMHACPWTN-SVLHLSEHLNQ 133 (263)
Q Consensus 110 ~~~CP~~~C~~~g-~~~~L~~Hl~~ 133 (263)
++.|+.+.|+... ....|..|++.
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHH
Confidence 4566544677663 56678888764
No 205
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=34.95 E-value=46 Score=20.48 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=27.3
Q ss_pred ceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|+..+.. ..+..|+.. -.-+++.|+ .|+... ....|..|+...|.
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~ 55 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHS 55 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECT--TTCCEESSHHHHHHHHTTTSC
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHHHHHHHHHHHcC
Confidence 4444432 334555432 123578886 487764 57789999877775
No 206
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.54 E-value=35 Score=22.18 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=26.8
Q ss_pred ceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhccc
Q psy12127 90 CKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVH 135 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H 135 (263)
|...+.. ..+..|+.. -.-+++.|+ .|+... ....|..|++..+
T Consensus 20 C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~ 66 (72)
T 1x6e_A 20 CGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHT 66 (72)
T ss_dssp SCCEESSHHHHHHHHHGGGCSCCEECS--SSCCEESSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhcCCCCCeECC--CCCcccCCHHHHHHHHHhcC
Confidence 6555543 345555542 223678886 487764 5778889987654
No 207
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=33.91 E-value=15 Score=29.33 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=17.9
Q ss_pred cccccCCCceeccccccccCCCCCCccCCc
Q psy12127 34 ITSCQTCGNLVCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 34 v~qC~~CGH~~C~~C~~~l~~CP~Cr~~~~ 63 (263)
.+.|..|||.|=.. .....||.|+.++.
T Consensus 132 ~y~C~~Cg~~~~~~--~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL--PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC--CGGGBCTTTCCBEE
T ss_pred EEECCCCCCcccCC--CCCCcCCCCCCcce
Confidence 36788888877211 11237999988753
No 208
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.63 E-value=29 Score=22.92 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred ceeeecc-chhhhhhccc----CCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDKC----KFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~C----~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|...+.. ..+..|+..= .-+++.|+ .|+... ....|..|++..|.
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~ 63 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCE--FCGKRFEKPDSVAAHRSKSHP 63 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECT--TTCCEESSHHHHHHHHHHTST
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCC--CCCchhCCHHHHHHHHHHhCC
Confidence 5555543 3455555422 14678886 488775 57789999988887
No 209
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.94 E-value=17 Score=24.43 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=18.1
Q ss_pred eeeccccCccccccccccCCCceecccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAARL 52 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l 52 (263)
|.|..|...|..-.+.-.+ |..+|..|..++
T Consensus 36 F~C~~C~~~L~~~~f~~~~-g~~yC~~c~~~~ 66 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTER-DDILCPDCGKDI 66 (72)
T ss_dssp CBCSSSCCBCTTSCCEECS-SSEECHHHHHTC
T ss_pred CEeccCCCcCCCCccEeEC-CEEEChhHcCcc
Confidence 5677777766643332244 667777776553
No 210
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.65 E-value=21 Score=25.49 Aligned_cols=35 Identities=34% Similarity=0.780 Sum_probs=25.9
Q ss_pred CceeeeccccCcccc---ccccccCCCceecccccccc
Q psy12127 18 ASISECGVCLEPLDR---GITSCQTCGNLVCTSCAARL 52 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~---Pv~qC~~CGH~~C~~C~~~l 52 (263)
...-.|..|...|-. .-..|..|-|.+|..|....
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccccccC
Confidence 345579999888763 23568899999999997653
No 211
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=32.25 E-value=22 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCceeeeccccCccccccccccCCCc
Q psy12127 17 IASISECGVCLEPLDRGITSCQTCGN 42 (263)
Q Consensus 17 l~~~l~CpIC~~~l~~Pv~qC~~CGH 42 (263)
......||.|.++- -|-..|.+||.
T Consensus 27 ~p~l~~c~~cGe~~-~~H~vc~~CG~ 51 (60)
T 3v2d_5 27 PPTLVPCPECKAMK-PPHTVCPECGY 51 (60)
T ss_dssp CCCCEECTTTCCEE-CTTSCCTTTCE
T ss_pred CCceeECCCCCCee-cceEEcCCCCc
Confidence 34566777777743 33445555553
No 212
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.19 E-value=32 Score=23.44 Aligned_cols=11 Identities=36% Similarity=0.930 Sum_probs=5.8
Q ss_pred eeccccCcccc
Q psy12127 22 ECGVCLEPLDR 32 (263)
Q Consensus 22 ~CpIC~~~l~~ 32 (263)
.|..|.+++.+
T Consensus 17 ~C~~C~~~I~~ 27 (80)
T 1x3h_A 17 KCGGCNRPVLE 27 (80)
T ss_dssp BCTTTCCBCCS
T ss_pred ccccCCCeecc
Confidence 45555555544
No 213
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.01 E-value=34 Score=23.53 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=5.1
Q ss_pred eeccccCccc
Q psy12127 22 ECGVCLEPLD 31 (263)
Q Consensus 22 ~CpIC~~~l~ 31 (263)
.|+.|.+++.
T Consensus 17 ~C~~C~~~I~ 26 (79)
T 2cor_A 17 ICQKCHAIID 26 (79)
T ss_dssp BCTTTCCBCC
T ss_pred CCccCCCEec
Confidence 4555555444
No 214
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.24 E-value=26 Score=24.38 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=4.8
Q ss_pred eeeccccCccc
Q psy12127 21 SECGVCLEPLD 31 (263)
Q Consensus 21 l~CpIC~~~l~ 31 (263)
|.|..|...|.
T Consensus 43 F~C~~C~~~L~ 53 (80)
T 2dj7_A 43 FKCQTCSVILT 53 (80)
T ss_dssp CBCSSSCCBCS
T ss_pred CCcCcCCCCcC
Confidence 34444444443
No 215
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.12 E-value=26 Score=22.51 Aligned_cols=10 Identities=30% Similarity=1.281 Sum_probs=6.9
Q ss_pred CCCCCccCCc
Q psy12127 54 KCPFCRITID 63 (263)
Q Consensus 54 ~CP~Cr~~~~ 63 (263)
.|+.|...+.
T Consensus 41 ~C~~C~k~f~ 50 (62)
T 1vd4_A 41 RCTFCHTEVE 50 (62)
T ss_dssp BCSSSCCBCE
T ss_pred ECCCCCCccc
Confidence 6777777654
No 216
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=30.31 E-value=62 Score=19.55 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=26.5
Q ss_pred ceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|+..+.. ..+..|+.. -.-+++.|+ .|+... ....|..|+...|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECS--SSSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCC--CCCchhcCHHHHHHHHHHhcc
Confidence 4444432 334555532 223678886 477764 57789999877653
No 217
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.03 E-value=20 Score=24.90 Aligned_cols=32 Identities=28% Similarity=0.757 Sum_probs=25.1
Q ss_pred CceeeeccccCccccccccccCC-Cceecccccccc
Q psy12127 18 ASISECGVCLEPLDRGITSCQTC-GNLVCTSCAARL 52 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~Pv~qC~~C-GH~~C~~C~~~l 52 (263)
.+.--|-||.+- .++.|..| |-++|..|+...
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHH
Confidence 455569999886 44689889 889999998863
No 218
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=29.89 E-value=16 Score=24.88 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=7.6
Q ss_pred eeccccCcccc
Q psy12127 22 ECGVCLEPLDR 32 (263)
Q Consensus 22 ~CpIC~~~l~~ 32 (263)
.|+.|.+++.+
T Consensus 17 ~C~~C~~~I~~ 27 (77)
T 2egq_A 17 KCAGCKNPITG 27 (77)
T ss_dssp CCSSSCCCCCC
T ss_pred cCcccCCcccC
Confidence 57777777764
No 219
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=29.52 E-value=25 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=26.0
Q ss_pred eeecc--ccCccccccccccCCCceecccccccc-CCCCC
Q psy12127 21 SECGV--CLEPLDRGITSCQTCGNLVCTSCAARL-LKCPF 57 (263)
Q Consensus 21 l~CpI--C~~~l~~Pv~qC~~CGH~~C~~C~~~l-~~CP~ 57 (263)
-.|.. |...-.-| +.|..||..||..=+... ..||.
T Consensus 15 ~~Cs~~~C~~~dflp-f~C~~C~~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 15 QHCQVQHCRQRDFLP-FVCDGCSGIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CCCSCTTTCCCSCCC-EECTTTCCEECSTTCSSGGGTCCC
T ss_pred CCcCcccCCCcccee-eECcccCcCcCcccCCccccCCCC
Confidence 37877 98876677 589999999998644332 36764
No 220
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.33 E-value=35 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=18.9
Q ss_pred CceecCCCCCCCCcc-ChhhHHHHHhc
Q psy12127 108 FRQLKCPMHACPWTN-SVLHLSEHLNQ 133 (263)
Q Consensus 108 ~~~~~CP~~~C~~~g-~~~~L~~Hl~~ 133 (263)
-+|+.|++..|+... ....|..|...
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence 478889755788774 45678888765
No 221
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.92 E-value=40 Score=23.62 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=36.7
Q ss_pred hcceecCCCCCCCceeeec--cchhhhhhcccC--CceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 77 TKLELPCRNFRFGCKVYLP--KAKRDKHEDKCK--FRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 77 ~~l~v~C~~~~~GC~~~~~--~~~~~~He~~C~--~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
..-.+.|.. |...+. ...+..|+..-. -+++.|+ .|+... ....|..|++..|.
T Consensus 21 ~~~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~--~C~k~F~~~~~L~~H~~~h~~ 79 (98)
T 2gqj_A 21 ERGEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHTMAEHS 79 (98)
T ss_dssp TTSCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCS--SSCCCCSCHHHHHHHHHHHSC
T ss_pred cCCCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECC--CCCCccCCHHHHHHHHHHHcC
Confidence 345567763 777765 355667765432 3678896 487765 57799999998886
No 222
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.79 E-value=35 Score=18.83 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=18.7
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhcc
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQV 134 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~~ 134 (263)
+++.|+.+.|+... ....|..|+...
T Consensus 5 k~~~C~~~~C~k~f~~~~~L~~H~~~H 31 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31 (38)
T ss_dssp CCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCcccCCHHHHHHHHHHh
Confidence 57788755788774 567888997653
No 223
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=28.66 E-value=25 Score=23.43 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=27.7
Q ss_pred ceeeeccccCcccccc-ccccCCCc---eecccccccc------CCCCCCccCCc
Q psy12127 19 SISECGVCLEPLDRGI-TSCQTCGN---LVCTSCAARL------LKCPFCRITID 63 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv-~qC~~CGH---~~C~~C~~~l------~~CP~Cr~~~~ 63 (263)
+.-.|.||++....|. .-| .|.+ .|=..|+.++ ..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999987655443 223 2333 5556677775 37999998764
No 224
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.41 E-value=37 Score=20.37 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=19.1
Q ss_pred ecCCCCCCCCc-cChhhHHHHHhcccC
Q psy12127 111 LKCPMHACPWT-NSVLHLSEHLNQVHH 136 (263)
Q Consensus 111 ~~CP~~~C~~~-g~~~~L~~Hl~~~H~ 136 (263)
..||. |... ++.+.|..|.+..|.
T Consensus 6 FiCP~--C~~~l~s~~~L~~Hye~~H~ 30 (34)
T 3mjh_B 6 FICPQ--CMKSLGSADELFKHYEAVHD 30 (34)
T ss_dssp EECTT--TCCEESSHHHHHHHHHHHTS
T ss_pred cCCcH--HHHHcCCHHHHHHHHHhccc
Confidence 56874 7555 578999999999996
No 225
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.12 E-value=29 Score=23.83 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=11.9
Q ss_pred eeeccccCccccccccccCCCceeccccccc
Q psy12127 21 SECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 21 l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
|.|..|..+|..-.+.-.+ |..+|..|..+
T Consensus 44 F~C~~C~~~L~~~~f~~~~-~~~~C~~c~~~ 73 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQD-SELLCNDCYCS 73 (82)
T ss_dssp SBCTTTCCBCSSCCEEEET-TEEEETTTSSC
T ss_pred CeecCCCCccCCCccEeeC-CEEECHHHHhh
Confidence 3444444444432111123 44444444433
No 226
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.86 E-value=67 Score=20.99 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=26.0
Q ss_pred ceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|...+.. ..+..|+.. -.-+++.|+ .|+... ....|..|+...+.
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECS--SSCCEESSHHHHHHHGGGSCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCC--CCCCccCCHHHHHHHHHHhCC
Confidence 5444432 334455432 123578886 477764 56788899876543
No 227
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.61 E-value=16 Score=25.16 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=10.2
Q ss_pred CceeeeccccCccccc
Q psy12127 18 ASISECGVCLEPLDRG 33 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~P 33 (263)
...-.|..|.+++...
T Consensus 13 ~~~~~C~~C~~~I~~~ 28 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV 28 (79)
T ss_dssp CCCCCCSSSCCCCCSS
T ss_pred CCCCccccCCCCccCc
Confidence 3445677777776654
No 228
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=27.01 E-value=26 Score=27.47 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.1
Q ss_pred CceeeeccccCccccc
Q psy12127 18 ASISECGVCLEPLDRG 33 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~P 33 (263)
...-=||-|..+|.+.
T Consensus 22 ~~~~FCPeCgNmL~pk 37 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPR 37 (133)
T ss_dssp CCCCBCTTTCCBCBCC
T ss_pred cCCeeCCCCCCEeeEC
Confidence 3445599999999875
No 229
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=26.96 E-value=25 Score=26.99 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.6
Q ss_pred ceeeeccccCccccc
Q psy12127 19 SISECGVCLEPLDRG 33 (263)
Q Consensus 19 ~~l~CpIC~~~l~~P 33 (263)
...=||-|..+|.++
T Consensus 3 ~~~FCp~CgnlL~~~ 17 (122)
T 1twf_I 3 TFRFCRDCNNMLYPR 17 (122)
T ss_dssp CCCBCSSSCCBCEEE
T ss_pred CCCcccccCccCccc
Confidence 345699999999865
No 230
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.93 E-value=28 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=18.9
Q ss_pred Cceecccccccc--CCCCCCccCCc
Q psy12127 41 GNLVCTSCAARL--LKCPFCRITID 63 (263)
Q Consensus 41 GH~~C~~C~~~l--~~CP~Cr~~~~ 63 (263)
|..+|..|..++ ..|+.|.++|.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 678899998875 58999998875
No 231
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.57 E-value=21 Score=23.54 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.9
Q ss_pred eeeccccCccc
Q psy12127 21 SECGVCLEPLD 31 (263)
Q Consensus 21 l~CpIC~~~l~ 31 (263)
|.|..|..+|.
T Consensus 33 F~C~~C~~~L~ 43 (65)
T 2iyb_E 33 FLCSCCSKCLI 43 (65)
T ss_dssp SBCTTTCCBCT
T ss_pred EECCCCCCcCC
Confidence 34444444443
No 232
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.23 E-value=21 Score=29.06 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=32.2
Q ss_pred ceeeeccccCccccccccccCCCceecccccccc--CCCCCCccC
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAARL--LKCPFCRIT 61 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l--~~CP~Cr~~ 61 (263)
+-|.|..|..+|..-.+.-.. |..+|..|..++ .+|..|...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~-g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHG-DEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEET-TEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCcCcccCCcCCCCeeEecC-CEeeChhhhHhhcCccccccccc
Confidence 558899999999875444456 999999999886 478777654
No 233
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.08 E-value=27 Score=24.55 Aligned_cols=42 Identities=12% Similarity=0.398 Sum_probs=24.1
Q ss_pred cCCceeeeccccCccccccccccCCCceeccccccccCCCCCCccCCc
Q psy12127 16 LIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 16 ~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~l~~CP~Cr~~~~ 63 (263)
.....-.|..|.+.+...+.. .. |..+=..| -.|-.|+.++.
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~-a~-~~~~H~~C----F~C~~C~~~L~ 62 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVK-AR-DKYRHPEC----FVCADCNLNLK 62 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEE-SS-SCEECTTT----CCCSSSCCCTT
T ss_pred CCCcCCCcccCCCEecccEEE-EC-CceECccC----CEecCCCCCCC
Confidence 445566788888887764332 22 44443333 24666776664
No 234
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.28 E-value=55 Score=23.93 Aligned_cols=42 Identities=19% Similarity=0.486 Sum_probs=30.9
Q ss_pred CceeeeccccCccc-cccccccCCCceecccccccc----C---CCCCCcc
Q psy12127 18 ASISECGVCLEPLD-RGITSCQTCGNLVCTSCAARL----L---KCPFCRI 60 (263)
Q Consensus 18 ~~~l~CpIC~~~l~-~Pv~qC~~CGH~~C~~C~~~l----~---~CP~Cr~ 60 (263)
.+...| ||...-. ..+.+|..|...|=..|...- . .||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 355678 8887654 457789999988888887542 1 7999974
No 235
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.25 E-value=48 Score=22.90 Aligned_cols=9 Identities=44% Similarity=0.910 Sum_probs=4.1
Q ss_pred eeccccCcc
Q psy12127 22 ECGVCLEPL 30 (263)
Q Consensus 22 ~CpIC~~~l 30 (263)
.|..|.+.+
T Consensus 17 ~C~~C~~~I 25 (82)
T 2co8_A 17 LCALCGEHL 25 (82)
T ss_dssp BCSSSCCBC
T ss_pred CCcccCCCc
Confidence 344444444
No 236
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=24.96 E-value=58 Score=22.16 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=32.6
Q ss_pred cCCceeeeccccCccccccccccCCCceeccccccc-c-----C--CCCCCccCC
Q psy12127 16 LIASISECGVCLEPLDRGITSCQTCGNLVCTSCAAR-L-----L--KCPFCRITI 62 (263)
Q Consensus 16 ~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~-l-----~--~CP~Cr~~~ 62 (263)
.....-.|.||.+. .-+..|..|...|=..|+.. + . .||.|+...
T Consensus 8 ~~~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 8 NLAPGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34455579999874 33678999999999999864 2 1 799997653
No 237
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=24.58 E-value=36 Score=23.76 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=4.3
Q ss_pred CCCCCcc
Q psy12127 54 KCPFCRI 60 (263)
Q Consensus 54 ~CP~Cr~ 60 (263)
.||.|+.
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5666665
No 238
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.50 E-value=31 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=10.9
Q ss_pred eeeeccccCccccc
Q psy12127 20 ISECGVCLEPLDRG 33 (263)
Q Consensus 20 ~l~CpIC~~~l~~P 33 (263)
..=||-|..+|.+.
T Consensus 4 m~FCp~Cgn~L~~~ 17 (113)
T 3h0g_I 4 FQYCIECNNMLYPR 17 (113)
T ss_dssp CCCCSSSCCCCEEC
T ss_pred ceeCcCCCCEeeEc
Confidence 34599999998875
No 239
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.36 E-value=29 Score=19.64 Aligned_cols=17 Identities=35% Similarity=0.907 Sum_probs=7.9
Q ss_pred ceeeeccchhhhhhccc
Q psy12127 90 CKVYLPKAKRDKHEDKC 106 (263)
Q Consensus 90 C~~~~~~~~~~~He~~C 106 (263)
|...++-..+..|.+.|
T Consensus 12 cqq~mpaahin~hldrc 28 (29)
T 3vhs_A 12 CQQMMPAAHINSHLDRC 28 (29)
T ss_dssp TCCEEEGGGHHHHHHHH
T ss_pred HHHhCcHHHHHHHHhcc
Confidence 44444444444444433
No 240
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.23 E-value=76 Score=22.26 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=30.5
Q ss_pred ceeeecc-chhhhhhcc-cCCceecCCCCCCCCcc-ChhhHHHHHhcccC
Q psy12127 90 CKVYLPK-AKRDKHEDK-CKFRQLKCPMHACPWTN-SVLHLSEHLNQVHH 136 (263)
Q Consensus 90 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~C~~~g-~~~~L~~Hl~~~H~ 136 (263)
|+..+.. ..+..|+.. =.-+|+.|+ .|+... ....|..|++..|.
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~~H~ 81 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCK--YCPATFYSSPGLTRHINKCHP 81 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECT--TSSCEESSHHHHHHHHHTTCT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCC--CCCCEeCCHHHHHHhCcccCc
Confidence 6665544 446666542 234788895 588774 67899999988885
No 241
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=23.98 E-value=35 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=22.7
Q ss_pred eccchhhhhhcccCCceecCCCCCCCCccChhhHHHHHhc
Q psy12127 94 LPKAKRDKHEDKCKFRQLKCPMHACPWTNSVLHLSEHLNQ 133 (263)
Q Consensus 94 ~~~~~~~~He~~C~~~~~~CP~~~C~~~g~~~~L~~Hl~~ 133 (263)
+..-+.+-|+.+|.|.. ||+ |.-..+.+-|..|...
T Consensus 16 vn~~DqelHdlnCs~Ni--CPY--C~nRls~eGl~RHV~~ 51 (77)
T 2l7x_A 16 VNAIDAEMHDLNCSYNI--CPY--CASRLTSDGLARHVTQ 51 (77)
T ss_dssp SSHHHHHHHHHHHTTTC--CTT--TCCCCCTTTHHHHHTT
T ss_pred ccHHHHHHHHcCCCccc--Chh--hhccCCccchhhhccc
Confidence 34445566777777764 554 6666677777777654
No 242
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.68 E-value=33 Score=28.62 Aligned_cols=28 Identities=29% Similarity=0.626 Sum_probs=18.7
Q ss_pred ccccccCCCceeccccccccCCCCCCccCCc
Q psy12127 33 GITSCQTCGNLVCTSCAARLLKCPFCRITID 63 (263)
Q Consensus 33 Pv~qC~~CGH~~C~~C~~~l~~CP~Cr~~~~ 63 (263)
..++|..||++.=+ ..-..||.|+.+-.
T Consensus 170 ~~~~C~~CG~i~~g---~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKG---EDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEES---SCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcC---cCCCCCCCCCCChH
Confidence 36788889988532 11138999987643
No 243
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.66 E-value=40 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=22.9
Q ss_pred chhcCCceeeeccccCccccccccccCCCceeccccccc
Q psy12127 13 CKELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
.++.+++...|+-|. -+.+|. +.+|..|+.-
T Consensus 4 ~~~~~eD~WkC~~C~-k~N~Pl-------~ryC~rCwaL 34 (53)
T 2cr8_A 4 GSSGSEDEWQCTECK-KFNSPS-------KRYCFRCWAL 34 (53)
T ss_dssp CSSCCSCCEECSSSC-CEECSS-------CCBCTTTCCB
T ss_pred CcCCCcceeeccccc-ccCCCc-------cchhHHHHHh
Confidence 356688999999999 477774 3568888754
No 244
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=27 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=16.9
Q ss_pred eeeccccCccc-cccccccCCCceecccccccc
Q psy12127 21 SECGVCLEPLD-RGITSCQTCGNLVCTSCAARL 52 (263)
Q Consensus 21 l~CpIC~~~l~-~Pv~qC~~CGH~~C~~C~~~l 52 (263)
|.|..|..+|. ...+.=.. |..+|..|..++
T Consensus 32 F~C~~C~~~L~~~~~f~~~~-~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQG-SSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEET-TEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCeeEeeC-CEEEChHHChHh
Confidence 56777777665 22111134 666777766553
No 245
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=22.76 E-value=58 Score=17.94 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=18.0
Q ss_pred ceecCCCCCCCCcc-ChhhHHHHHhc
Q psy12127 109 RQLKCPMHACPWTN-SVLHLSEHLNQ 133 (263)
Q Consensus 109 ~~~~CP~~~C~~~g-~~~~L~~Hl~~ 133 (263)
+++.|+...|+... ....|..|+..
T Consensus 7 k~~~C~~~~C~k~f~~~~~L~~H~~~ 32 (37)
T 1va1_A 7 KQHICHIQGCGKVYGKTSHLRAHLRW 32 (37)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 56788655788774 56788888764
No 246
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=22.53 E-value=34 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=21.1
Q ss_pred chhcCCceeeeccccCccccccccccCCCceecccccc
Q psy12127 13 CKELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAA 50 (263)
Q Consensus 13 ~~~~l~~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~ 50 (263)
.+-++.+...|+-|.. +.+|. +..|..|+.
T Consensus 6 ~di~~~D~WkC~~C~~-~N~Pl-------~r~C~rCw~ 35 (46)
T 2c6a_A 6 PEISLADYWKCTSCNE-MNPPL-------PSHCNRCWA 35 (46)
T ss_dssp SSSCGGGCEECTTTCC-EECSS-------CSSCTTTCC
T ss_pred CccCccceEecccccc-cCCCc-------cchhhHHHh
Confidence 3555679999999994 77774 345667754
No 247
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.34 E-value=83 Score=20.78 Aligned_cols=41 Identities=27% Similarity=0.618 Sum_probs=28.1
Q ss_pred ceeeeccccCccccccccccCCCceeccccccc-c-----C--CCCCCccC
Q psy12127 19 SISECGVCLEPLDRGITSCQTCGNLVCTSCAAR-L-----L--KCPFCRIT 61 (263)
Q Consensus 19 ~~l~CpIC~~~l~~Pv~qC~~CGH~~C~~C~~~-l-----~--~CP~Cr~~ 61 (263)
+...|.||.+. .-+..|..|...|=..|+.. + . .||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 44568888863 33567888888887888774 2 1 58888764
No 248
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.24 E-value=45 Score=24.62 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=18.0
Q ss_pred eeeccccCcccc--ccccccCCCceecccccccc
Q psy12127 21 SECGVCLEPLDR--GITSCQTCGNLVCTSCAARL 52 (263)
Q Consensus 21 l~CpIC~~~l~~--Pv~qC~~CGH~~C~~C~~~l 52 (263)
|.|..|..+|.. ..+.-.. |..+|..|..++
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~-g~~yC~~~y~~~ 63 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKL-GRKLCRRDYLRL 63 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBT-TBCCCHHHHHHH
T ss_pred CcccccCCchhcCCCeeEEEC-CeeechHHHHHH
Confidence 567777777753 1122244 677777776654
No 249
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=22.19 E-value=20 Score=30.23 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=8.0
Q ss_pred eecCCCCCCCceeee-----ccchhhhhhcc
Q psy12127 80 ELPCRNFRFGCKVYL-----PKAKRDKHEDK 105 (263)
Q Consensus 80 ~v~C~~~~~GC~~~~-----~~~~~~~He~~ 105 (263)
.+.|++.+.||...+ +..++++|.++
T Consensus 9 ~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 9 SMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ---------------CTTTTTTTTTHHHHHH
T ss_pred heeccccccCceeeccccccchhHHHHHHHH
Confidence 467999999999988 77778888653
No 250
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.84 E-value=40 Score=22.51 Aligned_cols=28 Identities=29% Similarity=0.757 Sum_probs=20.6
Q ss_pred eeccccCccccccccccCCCceecc-cccccc
Q psy12127 22 ECGVCLEPLDRGITSCQTCGNLVCT-SCAARL 52 (263)
Q Consensus 22 ~CpIC~~~l~~Pv~qC~~CGH~~C~-~C~~~l 52 (263)
.|.||.. ++-|.|+.|+-.+|+ .|...+
T Consensus 14 ~C~vC~~---~~kY~CPrC~~~yCSl~C~k~H 42 (56)
T 2yqq_A 14 VCVICLE---KPKYRCPACRVPYCSVVCFRKH 42 (56)
T ss_dssp CCTTTCS---CCSEECTTTCCEESSHHHHHHH
T ss_pred ccCcCcC---CCeeeCCCCCCCeeCHHHHHHH
Confidence 4888988 445788888888887 565543
No 251
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.77 E-value=27 Score=23.61 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.8
Q ss_pred eeccccCccc
Q psy12127 22 ECGVCLEPLD 31 (263)
Q Consensus 22 ~CpIC~~~l~ 31 (263)
.|+.|.+++.
T Consensus 13 ~C~~C~~~I~ 22 (77)
T 1g47_A 13 TCERCKGGFA 22 (77)
T ss_dssp BCSSSCCBCC
T ss_pred CchhcCCccC
Confidence 4555555443
No 252
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.62 E-value=51 Score=21.86 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=21.3
Q ss_pred hhcCCceeeeccccC--ccccccccccCCCceeccccccc
Q psy12127 14 KELIASISECGVCLE--PLDRGITSCQTCGNLVCTSCAAR 51 (263)
Q Consensus 14 ~~~l~~~l~CpIC~~--~l~~Pv~qC~~CGH~~C~~C~~~ 51 (263)
.+.+.+.+.||.|.. +..+. .. |-++|..|-.-
T Consensus 5 ~~~ll~~~~Cp~C~~~~lv~D~----~~-ge~vC~~CGlV 39 (58)
T 1dl6_A 5 RLDALPRVTCPNHPDAILVEDY----RA-GDMICPECGLV 39 (58)
T ss_dssp SCCCCSCCSBTTBSSSCCEECS----SS-CCEECTTTCCE
T ss_pred hhhccccccCcCCCCCceeEeC----CC-CeEEeCCCCCE
Confidence 456778889999975 22232 34 77888777443
No 253
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=21.40 E-value=16 Score=26.32 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=30.0
Q ss_pred CceeeeccchhhhhhcccCC-ceecCCCCCCCCccChhhHHHH
Q psy12127 89 GCKVYLPKAKRDKHEDKCKF-RQLKCPMHACPWTNSVLHLSEH 130 (263)
Q Consensus 89 GC~~~~~~~~~~~He~~C~~-~~~~CP~~~C~~~g~~~~L~~H 130 (263)
+|...+.-..++.|...|.. ..+.| -+|.......+...|
T Consensus 15 ~Cgd~lKK~kv~~H~~~Cr~~~~~SC--IDC~~~F~~~~y~~H 55 (79)
T 1wjv_A 15 ACGESVKKIQVEKHVSNCRNCECLSC--IDCGKDFWGDDYKSH 55 (79)
T ss_dssp SSCCEEETTHHHHHHHHCTTCCEEEE--TTTTEEEEGGGTTTC
T ss_pred CCCCeeecccchhHHhhCCCCCcEEe--cccCCeeCCCCEeCE
Confidence 68888888888999888886 36778 467766655666555
No 254
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.39 E-value=34 Score=19.63 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=8.1
Q ss_pred eeeeccccCccccc
Q psy12127 20 ISECGVCLEPLDRG 33 (263)
Q Consensus 20 ~l~CpIC~~~l~~P 33 (263)
.+.||||...+-++
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45666666655543
No 255
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.15 E-value=37 Score=21.50 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=15.0
Q ss_pred eeeeccccC-ccc-cccccccCCCceecccccc
Q psy12127 20 ISECGVCLE-PLD-RGITSCQTCGNLVCTSCAA 50 (263)
Q Consensus 20 ~l~CpIC~~-~l~-~Pv~qC~~CGH~~C~~C~~ 50 (263)
.+.||.|.. .|. ++ .. |.++|..|-.
T Consensus 5 ~~~CP~C~~~~l~~d~----~~-gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDP----ER-GEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEET----TT-TEEEESSSCC
T ss_pred cEeCcCCCCcceEEcC----CC-CeEECcccCC
Confidence 467888876 332 33 23 6666666644
No 256
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.44 E-value=33 Score=21.94 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=12.0
Q ss_pred hcCCceeeeccccCc
Q psy12127 15 ELIASISECGVCLEP 29 (263)
Q Consensus 15 ~~l~~~l~CpIC~~~ 29 (263)
+++.+.+.||+|...
T Consensus 25 ~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 25 DQLPDDWCCPVCGVS 39 (46)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hhCCCCCcCcCCCCc
Confidence 367888999999864
No 257
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=20.04 E-value=53 Score=23.81 Aligned_cols=34 Identities=21% Similarity=0.564 Sum_probs=26.9
Q ss_pred CceeeeccccCccccc-cccccC-CCceeccccccc
Q psy12127 18 ASISECGVCLEPLDRG-ITSCQT-CGNLVCTSCAAR 51 (263)
Q Consensus 18 ~~~l~CpIC~~~l~~P-v~qC~~-CGH~~C~~C~~~ 51 (263)
...|.|.+|.+-|.+- ..||++ =+|.||-.|-..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 5678999999999976 457863 389999999654
Done!