RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12127
(263 letters)
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 58.5 bits (141), Expect = 3e-11
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 79 LELPCRNFRFGCKVYLPKAKRDKHEDKCKFRQLKCPMHA--CPWTNSVLHLSEHLNQVHH 136
+ PC+ GC++ LP ++ +HE+ C+FR CP C W S+ + HL H
Sbjct: 2 VLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHK 61
Query: 137 -LHLLKGNGVNIEISNFKTKVSESETKVHKYVILMNCYSQYFI 178
+ L+G + ++ + +V++ +C+ +F+
Sbjct: 62 SITTLQGEDIVFLATDI------NLPGAVDWVMMQSCFGFHFM 98
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 29.9 bits (67), Expect = 0.057
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 22 ECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK----CPFCRITID 63
C +CLE + C + C C R ++ CP C++ ++
Sbjct: 7 RCPICLEDPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 28.7 bits (64), Expect = 0.093
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 22 ECGVCLEPLDRGITSCQTCGNLVCTSCAARL-LKCPFCRITI 62
C C C + +C+ C ++CP C+
Sbjct: 8 RCQQCQAEAKCPKLLP--CLHTLCSGCLEASGMQCPICQAPW 47
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 29.2 bits (65), Expect = 0.097
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 14 KELIASISECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-----CPFCRITID 63
E+ ++ C +C E CG+L+CTSC + CPFCR I
Sbjct: 17 CEMGSTFQLCKICAENDKDVKIEP--CGHLMCTSCLTSWQESEGQGCPFCRCEIK 69
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 28.3 bits (63), Expect = 0.15
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 22 ECGVCLEPLDRG--ITSCQTCGNLVCTSCAARLLK----CPFCRITI 62
EC VCL L+ G CG+ C L CP CR+T+
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 27.2 bits (60), Expect = 0.59
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 23 CGVCLEPLDRGITSCQTCGNLVCTSCAARLL-----KCPFCRITID 63
C +C L + + C +L C C R L CP CR
Sbjct: 26 CQICEHILADPVETS--CKHLFCRICILRCLKVMGSYCPSCRYPCF 69
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 27.4 bits (60), Expect = 0.74
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 22 ECGVCLEPLDRGITSCQTCGNLVCTSCAARLL--KCPFCRITIDYS-WQRNVALERI 75
C C L + C ++ C++C + + CP C + N L+ +
Sbjct: 24 RCSRCTNILREPVCLGG-CEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSM 79
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 27.3 bits (60), Expect = 0.82
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 22 ECGVCLEPLDRGITSCQTCGNLVCTSCAARLLK-------CPFCRITID-YSWQRNVALE 73
EC +CLE + +++ C ++ C C +LL CP C+ I S Q +
Sbjct: 23 ECPICLELIKEPVSTK--CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80
Query: 74 RIFTKL 79
++ +L
Sbjct: 81 QLVEEL 86
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 118
Score = 26.9 bits (59), Expect = 1.5
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 190 MSFVQISNSSPFH-----FGVF 206
MSF+ ++ S F +GVF
Sbjct: 1 MSFIPVAEDSDFPIQNLPYGVF 22
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.7 bits (53), Expect = 5.0
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 17/77 (22%)
Query: 21 SECGVCLEPLDRG-ITSCQTCGNLVCTSCAARLL------------KCPFCR----ITID 63
S C +CL +T+ C + CT C + + CP +
Sbjct: 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65
Query: 64 YSWQRNVALERIFTKLE 80
+ + I + +
Sbjct: 66 ENEIECMVAAEIMQRYK 82
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.0 bits (51), Expect = 6.3
Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 21 SECGVCLEPLDRG---ITSCQTCGNLVCTSCAARLLK-----CPFCRITIDYSWQRNVAL 72
C C R CG+ +C SC L CP C + S R
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63
Query: 73 E 73
E
Sbjct: 64 E 64
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 25.0 bits (53), Expect = 8.7
Identities = 11/129 (8%), Positives = 24/129 (18%)
Query: 44 VCTSCAARLLKCPFCRITIDYSWQRNVALERIFTKLELPCRNFRFGCKVYLPKAKRDKHE 103
+ + + + V ++ EL G + RD
Sbjct: 55 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKR 114
Query: 104 DKCKFRQLKCPMHACPWTNSVLHLSEHLNQVHHLHLLKGNGVNIEISNFKTKVSESETKV 163
R + + + L G +
Sbjct: 115 LMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDG 174
Query: 164 HKYVILMNC 172
Y++ N
Sbjct: 175 DPYILEYNV 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.138 0.463
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,019,878
Number of extensions: 49192
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 47
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.3 bits)