Query psy12129
Match_columns 154
No_of_seqs 68 out of 70
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 19:27:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00132 CRIB PAK (p21 activate 98.6 2.2E-08 4.7E-13 63.9 2.4 36 53-90 1-39 (42)
2 PF00786 PBD: P21-Rho-binding 98.1 1.2E-06 2.6E-11 58.8 1.8 21 54-75 1-21 (59)
3 cd01093 CRIB_PAK_like PAK (p21 97.8 1.7E-05 3.7E-10 51.4 2.6 32 53-85 1-37 (46)
4 smart00285 PBD P21-Rho-binding 97.7 2.2E-05 4.7E-10 48.8 2.2 17 55-72 1-17 (36)
5 KOG3671|consensus 91.2 0.12 2.5E-06 49.0 1.8 45 46-91 227-277 (569)
6 KOG0578|consensus 89.6 0.24 5.2E-06 46.9 2.4 32 51-83 24-60 (550)
7 PF05393 Hum_adeno_E3A: Human 82.7 0.55 1.2E-05 35.8 0.8 27 26-62 51-78 (94)
8 KOG1431|consensus 26.2 32 0.0007 30.9 1.0 23 24-56 103-125 (315)
9 COG3586 Uncharacterized conser 22.1 30 0.00066 26.8 0.1 23 61-83 66-88 (101)
10 PF11323 DUF3125: Protein of u 15.9 74 0.0016 22.0 0.8 23 47-69 18-42 (50)
No 1
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=98.62 E-value=2.2e-08 Score=63.86 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=26.0
Q ss_pred cccCCCccceeeecccCCCccccchh--H-HHHHHHHHhcC
Q psy12129 53 SMIGEPTNFQHTGHIGSGDVELGNSR--L-RAIQNQMQSKG 90 (154)
Q Consensus 53 SMIG~PTNF~HtaHIGSgD~~~g~~~--~-~~lq~QM~SKG 90 (154)
+|||.||||+|++|||. |.+ |+.. + ..++..++++|
T Consensus 1 ~~IS~Ptnf~H~~HvG~-d~~-g~~~~~~p~~w~~l~~~~~ 39 (42)
T cd00132 1 MEISTPTDFKHISHVGW-DGV-GFDGANLPPDLQSLFQTAG 39 (42)
T ss_pred CcccCCCCcCcccccCC-CCC-CccccCCCHHHHHHHHHcc
Confidence 58999999999999999 444 4431 2 26666676655
No 2
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=98.13 E-value=1.2e-06 Score=58.76 Aligned_cols=21 Identities=48% Similarity=0.836 Sum_probs=15.5
Q ss_pred ccCCCccceeeecccCCCcccc
Q psy12129 54 MIGEPTNFQHTGHIGSGDVELG 75 (154)
Q Consensus 54 MIG~PTNF~HtaHIGSgD~~~g 75 (154)
|||.|+||+|++|||. |.+.|
T Consensus 1 ~Is~P~nf~H~~HVg~-d~~~g 21 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGW-DPNTG 21 (59)
T ss_dssp TB---EEEEEEEEEEE-ETTTT
T ss_pred CCCCCCCCcceeeecc-CCCcc
Confidence 7999999999999999 66554
No 3
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=97.79 E-value=1.7e-05 Score=51.39 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=24.4
Q ss_pred cccCCCccceeeecccCCCccc-cch----hHHHHHHH
Q psy12129 53 SMIGEPTNFQHTGHIGSGDVEL-GNS----RLRAIQNQ 85 (154)
Q Consensus 53 SMIG~PTNF~HtaHIGSgD~~~-g~~----~~~~lq~Q 85 (154)
++|+.|+||+|..|||. |... +|. .|..+..+
T Consensus 1 ~~IS~P~n~~H~~Hv~~-d~~~g~f~glP~eW~~ll~~ 37 (46)
T cd01093 1 PEISSPTNFKHRVHVGF-DPQTGEFTGLPEEWQRLLKS 37 (46)
T ss_pred CccCCCCCceeeeEeeE-CCCCCcccCCCHHHHHHHHH
Confidence 57999999999999999 5533 244 77777665
No 4
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=97.73 E-value=2.2e-05 Score=48.80 Aligned_cols=17 Identities=47% Similarity=0.888 Sum_probs=15.4
Q ss_pred cCCCccceeeecccCCCc
Q psy12129 55 IGEPTNFQHTGHIGSGDV 72 (154)
Q Consensus 55 IG~PTNF~HtaHIGSgD~ 72 (154)
|+.|+||+|++|+|. |.
T Consensus 1 IS~P~nf~H~~HVg~-d~ 17 (36)
T smart00285 1 ISTPTDFKHIAHVGF-DG 17 (36)
T ss_pred CCCCCCCcEEEEeeE-CC
Confidence 899999999999997 44
No 5
>KOG3671|consensus
Probab=91.17 E-value=0.12 Score=49.02 Aligned_cols=45 Identities=31% Similarity=0.493 Sum_probs=36.6
Q ss_pred CCccccccccCCCccceeeecccCCCccccchh------HHHHHHHHHhcCC
Q psy12129 46 RPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR------LRAIQNQMQSKGG 91 (154)
Q Consensus 46 ~R~rIDRSMIG~PTNF~HtaHIGSgD~~~g~~~------~~~lq~QM~SKGG 91 (154)
++.+|-+-=|++||||+|+.|+|- |-..||++ ++..++.+-|+-|
T Consensus 227 kksk~tk~disaPtnf~h~~hVgw-d~~~gf~~~~~p~~~dp~~nn~~s~ag 277 (569)
T KOG3671|consen 227 KKSKITKADISAPTNFPHIPHVGW-DEQVGFDSAPAPNNNDPPLNNLFSSAG 277 (569)
T ss_pred cccccccccCCCCCCCccccccCC-CcCCCcccCCCCCCCChhhhcccccCC
Confidence 467889999999999999999999 88888764 5566666666665
No 6
>KOG0578|consensus
Probab=89.58 E-value=0.24 Score=46.85 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=24.7
Q ss_pred cccccCCCccceeeecccCCCcccc-ch----hHHHHH
Q psy12129 51 DRSMIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQ 83 (154)
Q Consensus 51 DRSMIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq 83 (154)
-+|=|+.|+||.|+-|.|. |..-| |+ .|..|+
T Consensus 24 ~~s~iS~P~nf~h~vHvGf-d~~tg~ftGlP~~W~~Ll 60 (550)
T KOG0578|consen 24 GKSEISSPSNFEHRVHVGF-DPVTGEFTGLPKQWQRLL 60 (550)
T ss_pred CCCccCCCCCccceeeccc-CCCcccccCCcHHHHHHh
Confidence 3789999999999999999 66444 33 676663
No 7
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=82.65 E-value=0.55 Score=35.79 Aligned_cols=27 Identities=56% Similarity=1.098 Sum_probs=21.9
Q ss_pred hhhccccCCCccccccccccCCccccccccC-CCccce
Q psy12129 26 WFSCCINQPTAPQRKRHQVRRPMRIDRSMIG-EPTNFQ 62 (154)
Q Consensus 26 ~f~CCi~~~~~p~rk~~~~~~R~rIDRSMIG-~PTNF~ 62 (154)
||.||.. || |.|+.|=|-.|| +|.|-+
T Consensus 51 wfvCC~k------Rk----rsRrPIYrPvI~~~P~~~~ 78 (94)
T PF05393_consen 51 WFVCCKK------RK----RSRRPIYRPVIGLEPQNLQ 78 (94)
T ss_pred HHHHHHH------hh----hccCCccccccccCCCccc
Confidence 7899975 22 368999999999 999965
No 8
>KOG1431|consensus
Probab=26.19 E-value=32 Score=30.88 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=17.1
Q ss_pred HhhhhccccCCCccccccccccCCccccccccC
Q psy12129 24 LQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIG 56 (154)
Q Consensus 24 ~q~f~CCi~~~~~p~rk~~~~~~R~rIDRSMIG 56 (154)
+.|++-||-+.-+| -.||.+||=
T Consensus 103 vsclStCIfPdkt~----------yPIdEtmvh 125 (315)
T KOG1431|consen 103 VSCLSTCIFPDKTS----------YPIDETMVH 125 (315)
T ss_pred hhhcceeecCCCCC----------CCCCHHHhc
Confidence 45888899866544 389999983
No 9
>COG3586 Uncharacterized conserved protein [Function unknown]
Probab=22.14 E-value=30 Score=26.78 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=18.7
Q ss_pred ceeeecccCCCccccchhHHHHH
Q psy12129 61 FQHTGHIGSGDVELGNSRLRAIQ 83 (154)
Q Consensus 61 F~HtaHIGSgD~~~g~~~~~~lq 83 (154)
-.-+||-|.||++.++.++..|-
T Consensus 66 VsNiG~~g~GD~Ei~i~~~~~lp 88 (101)
T COG3586 66 VSNIGHWGNGDVEIGIEDLANLP 88 (101)
T ss_pred ccccCCCcCCcEEEEEeehhhch
Confidence 45789999999999988766553
No 10
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=15.90 E-value=74 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=19.0
Q ss_pred Cccccc--cccCCCccceeeecccC
Q psy12129 47 PMRIDR--SMIGEPTNFQHTGHIGS 69 (154)
Q Consensus 47 R~rIDR--SMIG~PTNF~HtaHIGS 69 (154)
=++|.+ ||+|+..++.|.-+++.
T Consensus 18 ~~~~e~~fS~Lga~~q~a~yckl~f 42 (50)
T PF11323_consen 18 CRNWESNFSMLGAHFQSANYCKLNF 42 (50)
T ss_pred eeeecccchhhccccceeeeEEecc
Confidence 347888 99999999999877664
Done!