Query psy12129
Match_columns 154
No_of_seqs 68 out of 70
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:27:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cee_B Wiskott-aldrich syndrom 98.9 8.4E-10 2.9E-14 73.8 2.8 38 47-85 1-44 (59)
2 2qme_I CRIB domain of the seri 98.1 7.9E-07 2.7E-11 54.5 1.6 29 54-83 1-34 (36)
3 2odb_B Serine/threonine-protei 97.9 3.4E-06 1.2E-10 51.3 1.5 22 55-77 2-24 (35)
4 1f3m_A Serine/threonine-protei 97.7 8.3E-06 2.8E-10 57.5 1.7 33 51-84 2-39 (80)
5 2ov2_I Serine/threonine-protei 97.6 1.5E-05 5.3E-10 48.3 0.6 20 55-75 2-21 (35)
6 2lnh_A N-WAsp, neural wiskott- 96.4 0.00087 3E-08 45.8 1.1 25 59-84 2-32 (65)
7 1ej5_A WAsp, wiskott-aldrich s 95.9 0.0032 1.1E-07 46.6 2.1 25 59-84 1-31 (107)
8 4fie_A Serine/threonine-protei 95.4 0.0027 9.3E-08 54.4 0.0 29 54-83 7-40 (423)
9 1ytv_M V1AR, vasopressin V1A r 22.6 29 0.001 25.0 1.1 19 17-35 16-37 (84)
10 1cf4_B Protein (activated P21C 20.3 30 0.001 22.4 0.7 14 55-68 9-24 (44)
No 1
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=98.87 E-value=8.4e-10 Score=73.83 Aligned_cols=38 Identities=32% Similarity=0.624 Sum_probs=31.7
Q ss_pred CccccccccCCCccceeeecccCCCccccch------hHHHHHHH
Q psy12129 47 PMRIDRSMIGEPTNFQHTGHIGSGDVELGNS------RLRAIQNQ 85 (154)
Q Consensus 47 R~rIDRSMIG~PTNF~HtaHIGSgD~~~g~~------~~~~lq~Q 85 (154)
|+||++.+|+.||||.|++|||. |.+.||+ +|..|+..
T Consensus 1 ~~k~~k~~Is~Ptnf~Hv~HvG~-d~~~gf~~~g~pp~W~~ll~~ 44 (59)
T 1cee_B 1 KKKISKADIGAPSGFKHVSHVGW-DPQNGFDVNNLDPDLRSLFSR 44 (59)
T ss_dssp CCCCCTTTSCCCCCCEEEEEECC-CTTTCCCCSSCCHHHHHHHTT
T ss_pred CCCCCCCcccCCCCCCCcceecc-CCCCCcccCCCCHHHHHHHHH
Confidence 46899999999999999999999 8777764 67766643
No 2
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=98.12 E-value=7.9e-07 Score=54.48 Aligned_cols=29 Identities=31% Similarity=0.506 Sum_probs=19.5
Q ss_pred ccCCCccceeeecccCCCcccc-ch----hHHHHH
Q psy12129 54 MIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQ 83 (154)
Q Consensus 54 MIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq 83 (154)
.||.||||+|..|||. |...| |. .|..|.
T Consensus 1 ~Is~Ptnf~H~~Hvg~-d~~tG~~~glp~~W~~ll 34 (36)
T 2qme_I 1 EISLPSDFEHTIHVGF-DAVTGEFTGMPEQWARLL 34 (36)
T ss_dssp CBCCCEEEEEEEEECC-BTTTTBCC----------
T ss_pred CCcCCCCCCCeeEccc-CCCCCcccCCCHHHHHHH
Confidence 4999999999999999 77666 33 555554
No 3
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=97.90 E-value=3.4e-06 Score=51.25 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.1
Q ss_pred cCCCccceeeecccCCCcccc-ch
Q psy12129 55 IGEPTNFQHTGHIGSGDVELG-NS 77 (154)
Q Consensus 55 IG~PTNF~HtaHIGSgD~~~g-~~ 77 (154)
|+.||||+|..|+|. |.+.| |+
T Consensus 2 Is~Ptnf~H~~Hvg~-d~~tG~f~ 24 (35)
T 2odb_B 2 ISAPQNFQHRVHTSF-DPKEGKFV 24 (35)
T ss_dssp BCCCEEEEEEEEEEE-ETTTTEEE
T ss_pred CcCCCCCcCeeeeeE-CCCCCccc
Confidence 899999999999999 77666 44
No 4
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=97.75 E-value=8.3e-06 Score=57.48 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=20.7
Q ss_pred cccccCCCccceeeecccCCCcccc-ch----hHHHHHH
Q psy12129 51 DRSMIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQN 84 (154)
Q Consensus 51 DRSMIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq~ 84 (154)
++..||.||||+|++|+|. |...| |+ .|..|+.
T Consensus 2 ~~~~Is~Ptnf~H~~HVg~-D~~tG~~~GlP~eW~~ll~ 39 (80)
T 1f3m_A 2 ERPEISLPSDFEHTIHVGF-DAVTGEFTGMPEQWARLLQ 39 (80)
T ss_dssp -------CCSSEEEEEEEE-ETTTTEEESCCHHHHHHHH
T ss_pred CCCccCCCCCCCCeeeccc-CCCCCccCCCCHHHHHHHH
Confidence 4568999999999999998 76666 33 7777764
No 5
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=97.55 E-value=1.5e-05 Score=48.32 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.6
Q ss_pred cCCCccceeeecccCCCcccc
Q psy12129 55 IGEPTNFQHTGHIGSGDVELG 75 (154)
Q Consensus 55 IG~PTNF~HtaHIGSgD~~~g 75 (154)
|+.|+||+|..|+|. |.+.|
T Consensus 2 IS~Ptnf~H~~Hvg~-d~~tg 21 (35)
T 2ov2_I 2 ISAPSNFEHRVHTGF-DQHEQ 21 (35)
T ss_dssp BCCCEEEEEEEEEEE-ETTTT
T ss_pred CcCCCCCcCeeeeee-CCCCC
Confidence 899999999999999 76555
No 6
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=96.41 E-value=0.00087 Score=45.83 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=21.3
Q ss_pred ccceeeecccCCCccccch------hHHHHHH
Q psy12129 59 TNFQHTGHIGSGDVELGNS------RLRAIQN 84 (154)
Q Consensus 59 TNF~HtaHIGSgD~~~g~~------~~~~lq~ 84 (154)
|||+|++|+|. |.+.||+ .|..|+.
T Consensus 2 tnF~Hv~HVG~-D~~tGf~~~glp~eW~~ll~ 32 (65)
T 2lnh_A 2 SNFQHIGHVGW-DPNTGFDLNNLDPELKNLFD 32 (65)
T ss_dssp CCCSSCCSCCE-ETTTEECGGGCCTTHHHHHH
T ss_pred CCCEeeeeeee-CCCCCcCCcCCCHHHHHHHH
Confidence 89999999999 9888864 7877765
No 7
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=95.89 E-value=0.0032 Score=46.59 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.4
Q ss_pred ccceeeecccCCCccccch------hHHHHHH
Q psy12129 59 TNFQHTGHIGSGDVELGNS------RLRAIQN 84 (154)
Q Consensus 59 TNF~HtaHIGSgD~~~g~~------~~~~lq~ 84 (154)
|||+|++|+|. |.+.||+ .|..|++
T Consensus 1 tnF~Hv~HVG~-D~~tGF~~~glppeWk~LL~ 31 (107)
T 1ej5_A 1 SGFKHVSHVGW-DPQNGFDVNNLDPDLRSLFS 31 (107)
T ss_dssp CCCCCCCCCCC-BTTTBCCTTTCCHHHHHHHH
T ss_pred CCCCcceeccc-CCCCCcCCCCCCHHHHHHHH
Confidence 79999999999 8888887 6777764
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=95.38 E-value=0.0027 Score=54.44 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=0.0
Q ss_pred ccCCCccceeeecccCCCcccc-ch----hHHHHH
Q psy12129 54 MIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQ 83 (154)
Q Consensus 54 MIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq 83 (154)
=|+.|+||.|+.|+|. |...| |. .|..|+
T Consensus 7 ~is~p~n~~h~~hvg~-d~~tg~f~glP~~W~~ll 40 (423)
T 4fie_A 7 EISAPSNFEHRVHTGF-DQHEQKFTGLPRQWQSLI 40 (423)
T ss_dssp -----------------------------------
T ss_pred cccCCCCCCceeecCc-cCCCCCcccCCHHHHHHH
Confidence 4999999999999999 76444 44 777665
No 9
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=22.64 E-value=29 Score=24.95 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=12.9
Q ss_pred CcchhhH---HhhhhccccCCC
Q psy12129 17 NMAGEMW---LQWFSCCINQPT 35 (154)
Q Consensus 17 ~~~ge~W---~q~f~CCi~~~~ 35 (154)
-|.+-+| ++||.||-..++
T Consensus 16 gFnshLl~~~lr~fpCC~~~k~ 37 (84)
T 1ytv_M 16 GIEENLYFQGQGSFPCCQNMKE 37 (84)
T ss_pred ccccccchhhhhccccccCccc
Confidence 3555666 579999976554
No 10
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=20.27 E-value=30 Score=22.35 Aligned_cols=14 Identities=50% Similarity=0.878 Sum_probs=9.6
Q ss_pred cCCC--ccceeeeccc
Q psy12129 55 IGEP--TNFQHTGHIG 68 (154)
Q Consensus 55 IG~P--TNF~HtaHIG 68 (154)
|..| +.|.||+|=.
T Consensus 9 IS~pl~~SFiHtgHGd 24 (44)
T 1cf4_B 9 ISQPLQNSFIHTGHGD 24 (44)
T ss_dssp CCCSCSSCCCCCCCCC
T ss_pred ccccccccceecCCCC
Confidence 5555 4599999843
Done!