RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12129
(154 letters)
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator
GTPase and the GTPase binding domain of ITS effector
WAsp; HET: GCP; NMR {Homo sapiens}
Length = 59
Score = 37.5 bits (87), Expect = 1e-04
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 49 RIDRSMIGEPTNFQHTGHIG 68
+I ++ IG P+ F+H H+G
Sbjct: 3 KISKADIGAPSGFKHVSHVG 22
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain,
autoinhibitory fragment, homodimer, transferase; 2.30A
{Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Length = 80
Score = 29.5 bits (66), Expect = 0.11
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 51 DRSMIGEPTNFQHTGHIG 68
+R I P++F+HT H+G
Sbjct: 2 ERPEISLPSDFEHTIHVG 19
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3,
small GTP binding protein, P21 RAC, RAS-related
botulinum toxin substrate 3; HET: GCP; 1.75A {Homo
sapiens}
Length = 36
Score = 27.7 bits (62), Expect = 0.25
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 55 IGEPTNFQHTGHIG 68
I P++F+HT H+G
Sbjct: 2 ISLPSDFEHTIHVG 15
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB,
protein-protein complex, structu genomics, structural
genomics consortium, SGC; HET: GCP; 2.40A {Homo
sapiens}
Length = 35
Score = 27.3 bits (61), Expect = 0.27
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 55 IGEPTNFQHTGHIG 68
I P NFQH H
Sbjct: 2 ISAPQNFQHRVHTS 15
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP
binding protein, P21 RAC, RAS-related botulinum toxin
substrate 3, signalling protein; HET: GCP; 2.10A {Homo
sapiens}
Length = 35
Score = 26.6 bits (59), Expect = 0.54
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 55 IGEPTNFQHTGHIG 68
I P+NF+H H G
Sbjct: 2 ISAPSNFEHRVHTG 15
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 26.4 bits (59), Expect = 3.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 45 RRPMRIDRSMIGEPTNFQHTG 65
R +I M+GEP++ ++ G
Sbjct: 151 ARDEKITYCMVGEPSSAKNLG 171
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 26.5 bits (59), Expect = 4.2
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 42 HQVRRPMRI--DRSMIGEPTNFQHTG--HIGSGDVELG---NSRLRAIQNQMQSKGGYEA 94
++ P+R DR+ + TG H ++G + A++ S G
Sbjct: 247 YKTGHPVRCMLDRN-----EDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSR 301
Query: 95 DLGVRVSAR 103
DL + R
Sbjct: 302 DLSHSIMER 310
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 26.5 bits (59), Expect = 4.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 44 VRRPMRIDRSMIGEPTNFQHTG 65
R ID ++GEPT G
Sbjct: 153 KARDELIDYCIVGEPTAVDKLG 174
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 26.4 bits (59), Expect = 4.9
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 45 RRPMRI--DRSMIGEPTNFQHTG--HIGSGDVELG---NSRLRAIQNQMQSKGGYEADLG 97
RP ++ DR + TG H +G + +L ++ G+ ADL
Sbjct: 250 GRPCKMRYDRD-----DDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLS 304
Query: 98 VRVSAR 103
+ V R
Sbjct: 305 LPVCDR 310
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A
family, amino-acid biosynthesis, metallopeptidase; 1.90A
{Rhodopseudomonas palustris}
Length = 433
Score = 25.8 bits (57), Expect = 8.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 44 VRRPMRIDRSMIGEPTNFQ-HTGHIGSGDVEL 74
+ R R D +I EPT +G+ L
Sbjct: 189 LMRGYRADACLIPEPTGHTLTRAQVGAVWFRL 220
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme,
structural genomics; 1.65A {Vibrio cholerae o1 biovar el
tor} PDB: 3t6m_A
Length = 268
Score = 25.3 bits (56), Expect = 9.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 45 RRPMRIDRSMIGEPTNFQHTG 65
R ID ++GEP++ G
Sbjct: 154 ARNELIDMCIVGEPSSTLAVG 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,296,182
Number of extensions: 119741
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 11
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)