BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1213
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 198/428 (46%), Gaps = 52/428 (12%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
N+V VR+P G N+ ELA L +++ G+ +D ++ G IQ
Sbjct: 6 NVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDE 65
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
+N R AAL+AGF D +T+ S Q E MS P
Sbjct: 66 ANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSP 125
Query: 168 I-----RHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSA 222
R ++++ +R + D + + MG +A
Sbjct: 126 YALKQHRWGQRLQHGEIRDTVWEVLEDPIHHI----------------------MMGETA 163
Query: 223 DRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGDK----TISKDNGVRV 277
+ L ++++R+EQDE ALRSHTLA +A E GY D I+PI + ++ SKD R
Sbjct: 164 ENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRA 223
Query: 278 S-TPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVY 336
T E++A LKPAF K GSVTA N+S L DG++ V+M+E KAK+ GL+P A + +
Sbjct: 224 DITAEKLAGLKPAFRK-DGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSV 282
Query: 337 VSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNY 396
DPK + +GPA A + LE+ SL D D E++EAFA Q LA K +D
Sbjct: 283 AGVDPK-IMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDL------- 334
Query: 397 MGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGG 456
D K N G + +GHP TG R+TV + L R + G+ + C GG
Sbjct: 335 ----------DREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRGLEKGIASLCVGGG 384
Query: 457 QGVGMIIE 464
GV + IE
Sbjct: 385 IGVALFIE 392
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 201/429 (46%), Gaps = 54/429 (12%)
Query: 47 KNIVFVDGVRTPFLLS-GTDYANMMAHELARHSLIGILQKT-GISKDLIDYIVYGTVIQE 104
+ +V VD +RTP S G + N+ A +L+ H +L + ++ +D I +G V Q
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 105 VKTS-NIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFM 163
++ NI R AAL A PA TV C SS Q E
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSAD 223
+P H L R N AK G +A+
Sbjct: 122 GHVPXSHGVDFHPGLSR-NVAKAAG----------------------------XXGLTAE 152
Query: 224 RLAAAFKVSRKEQDEYALRSHTLAQQAQEKG-YLTDILPIQVGD-----KTISKDNGVR- 276
L+ +SR+ QD++A RSH A A + G + T+I+P D K + D +R
Sbjct: 153 XLSRLHGISREXQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRP 212
Query: 277 VSTPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVY 336
+T E ++ L+PAF G+VTA SS L+DGA+A ++ +E++A++LGLKP+A +R
Sbjct: 213 ETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAV 272
Query: 337 VSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNY 396
V DP GP A+ L++AGLS SDID +E +EAFA QIL +K
Sbjct: 273 VGCDPSIX-GYGPVPASKLALKKAGLSASDIDVFEXNEAFAAQILPCIK----------D 321
Query: 397 MGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGG 456
+G ++ K N GG++++GHP +G R++ N R+D QFGL C G
Sbjct: 322 LGLXEQID----EKINLNGGAIALGHPLGCSGARISTTLINLXERKDAQFGLATXCIGLG 377
Query: 457 QGVGMIIER 465
QG+ + ER
Sbjct: 378 QGIATVFER 386
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 171 bits (434), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 205/421 (48%), Gaps = 35/421 (8%)
Query: 51 FVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTS-N 109
V+ VRTP G A++ +L H+L ++ ++G+ K+ ++ + G Q + + N
Sbjct: 6 IVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRN 65
Query: 110 IGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIPIR 169
+ R A L AGF + TV C S + E MS P
Sbjct: 66 VARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYA 125
Query: 170 HSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAAAF 229
+ R P L + T F+ P + E+MG +A+ LA +
Sbjct: 126 VPKPERGF---------PTGNLVMYDTTLGWRFVN--PKMQALYGTESMGETAENLAEMY 174
Query: 230 KVSRKEQDEYALRSHTLAQQAQEKGYLTD---ILPIQVGDKTI--SKDNGVRVSTP-EQM 283
+ R+EQD +AL SH A +A E+G D +P++ G + I +D G R T E++
Sbjct: 175 GIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKL 234
Query: 284 AKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDPKD 343
A L+P F + G+VTA NSS L DGA+A +++++ AK GL+P A +R + V+ P
Sbjct: 235 AALRPVF-REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRA-IAVAGVPPR 292
Query: 344 QLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSSKV 403
+ +GP AT + LERAGLS SD+ E++EAFA Q LA L+ EW +
Sbjct: 293 IMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLR----EW----------SL 338
Query: 404 GVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGMII 463
+ D + N GG++++GHP A+G R+ + + R QFGL C GQG+ +++
Sbjct: 339 SMED-QRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKVQFGLATMCIGVGQGIAVVV 397
Query: 464 E 464
E
Sbjct: 398 E 398
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 205/433 (47%), Gaps = 62/433 (14%)
Query: 47 KNIVFVDGVRTPFLLS-GTDYANMMAHELARHSLIGILQKTG-ISKDLIDYIVYGTVIQE 104
+++V VD RTP S G + N A +++ H + +L++ + ++ +++G V Q
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQT 64
Query: 105 VKTS-NIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFM 163
++ NI R A+L + A TV+ C SS E M
Sbjct: 65 LEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSAD 223
+ + H + P+ P + A +SG MG +A+
Sbjct: 125 GHVSMMHG-------------------------VDPN---PHMSLYAAKASG-MMGLTAE 155
Query: 224 RLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGD-----KTISKDNGVRV 277
L +SR++QD +A+RSH LA +A +G D I+P+Q D K D +R
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRP 215
Query: 278 -STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVY 336
+T E +A LKPAF G+VTA SS +TDGAS ++M+ +AK LGL+P A +R
Sbjct: 216 DTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAV 275
Query: 337 VSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQ---ILANLKAMDSEWFA 393
DP + GP AT + L+RAGL+++DID E++EAFA Q +L +LK +D
Sbjct: 276 AGVDPA-IMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDK---- 330
Query: 394 KNYMGRSSKVGVPDLN-KFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAAC 452
+N K N GG++++GHPF +G R++ N + + G FGL C
Sbjct: 331 --------------MNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGGTFGLSTMC 376
Query: 453 AAGGQGVGMIIER 465
GQG+ + ER
Sbjct: 377 IGLGQGIATVFER 389
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 209/431 (48%), Gaps = 52/431 (12%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
K++V V VRTP G + N A +L ++ + + G++ ID ++ G V+Q
Sbjct: 5 KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDI 166
N+ R+ A++AG + P++TV C S + E MS
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 167 PI-----RHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHS 221
P R KM + ++ ++ D I A ++ MG +
Sbjct: 125 PYIVPTARFGSKM--------------GNITMVDSMLTDGLID---AFNQYH----MGIT 163
Query: 222 ADRLAAAFKVSRKEQDEYALRSHTLAQQA-QEKGYLTDILPIQV-----GDKTISKDNGV 275
A+ +A F+ +R+ QD+ AL S A+ A + + +I+P+ V +TI KD
Sbjct: 164 AENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYP 223
Query: 276 RVS-TPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDF 334
++ T E ++KLKPAF K G+VTA N+S + DGA+ ++M++ KA +LG++P A ++ +
Sbjct: 224 KLGMTFEGLSKLKPAF-KKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSY 282
Query: 335 VYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAK 394
+P + + GP AT + L++AGLS++DID E +EAFA Q LA K
Sbjct: 283 ASAGVEP-EVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALA----------VK 331
Query: 395 NYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAA 454
N + D +K N GG++++GHP A+G R+ V + + + GL C
Sbjct: 332 NEL-------QIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKRKVETGLATLCIG 384
Query: 455 GGQGVGMIIER 465
GGQG+ M++ R
Sbjct: 385 GGQGISMVVSR 395
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 195/427 (45%), Gaps = 44/427 (10%)
Query: 45 TGKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQE 104
T K +V V RTP + + A +L ++ G ++K GI K+ + G V+Q
Sbjct: 6 TLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 65
Query: 105 VKTSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMS 164
+ R+A L AG TP T+ C S + E MS
Sbjct: 66 GEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 165 DIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADR 224
++P N+ TP +KL I D + + + MG A+
Sbjct: 126 NVPYVM-----------NRGSTPYGGVKLEDLIVKD-------GLTDVYNKIHMGSCAEN 167
Query: 225 LAAAFKVSRKEQDEYALRSHTLAQQAQEKG-YLTDILPIQVG-----DKTISKDNGVRVS 278
A ++R EQD YA+ S+T ++ A E G + +++P+ V D + +D +
Sbjct: 168 TAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRV 227
Query: 279 TPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVS 338
++ KLK F K +G+VTAAN+S L DGA+A V+MT AK+L + P A + F +
Sbjct: 228 DFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA 287
Query: 339 QDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMG 398
+P D + P YA VL+ GL DI WEV+EAF+ +LAN+K ++
Sbjct: 288 VEPID-FPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEI--------- 337
Query: 399 RSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQG 458
D K N GG++S+GHP +G R+ H + L + G++GL + C GG
Sbjct: 338 --------DPQKVNINGGAVSLGHPIGMSGARIVGHLTHAL--KQGEYGLASICNGGGGA 387
Query: 459 VGMIIER 465
M+I++
Sbjct: 388 SAMLIQK 394
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 204/425 (48%), Gaps = 41/425 (9%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
+ +V RT G + ++ A EL + +++ I+ D+ID + G V+
Sbjct: 7 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDI 166
NI R+ AL AG + PA T+ + C S + E MS
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 167 PIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLA 226
P L+ A D + + I+ +++ + MG +A+ +A
Sbjct: 127 PY--------LVPSARYGARMGDAAFVDSMIKD--------GLSDIFNNYHMGITAENIA 170
Query: 227 AAFKVSRKEQDEYALRSHTLAQQAQEKG-YLTDILPIQV----GDKTISKDNGVRVSTP- 280
+ ++R+EQDE AL S A++AQ +G + +I+P+ + GD + KD ++ T
Sbjct: 171 EQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTM 230
Query: 281 EQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQD 340
E++AKL+PAF K G+VTA N+S + DGA+ V+M + KA++LG++P A + + D
Sbjct: 231 EKLAKLRPAF-KKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVD 289
Query: 341 PKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRS 400
PK + GP AT + LE A +++ DID E +EAFA Q +A ++ ++
Sbjct: 290 PK-IMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNI----------- 337
Query: 401 SKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVG 460
D+NK N GG+++IGHP +G R+ + R D + GL C GG G
Sbjct: 338 ------DMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRRDAKTGLATLCIGGGMGTT 391
Query: 461 MIIER 465
+I++R
Sbjct: 392 LIVKR 396
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 198/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E HEAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 199/423 (47%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
+N R+AA+ AG + A + C S + E MS P
Sbjct: 64 ANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 1 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 61 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 120
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 121 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 163
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 164 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 223
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 224 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 282
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 283 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 329
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 330 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 384
Query: 462 IIE 464
IE
Sbjct: 385 CIE 387
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E HEAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG+P A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 193/426 (45%), Gaps = 44/426 (10%)
Query: 46 GKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEV 105
G +V V RTP + + A +L ++ G ++K GI K+ + G V+Q
Sbjct: 18 GSEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGG 77
Query: 106 KTSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSD 165
+ R+A L AG TP T+ S + E MS+
Sbjct: 78 EGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 137
Query: 166 IPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRL 225
+P N+ TP +KL I D + + + MG A+
Sbjct: 138 VP-----------YVMNRGSTPYGGVKLEDLIVKD-------GLTDVYNKIHMGSCAENT 179
Query: 226 AAAFKVSRKEQDEYALRSHTLAQQAQEKG-YLTDILPIQVG-----DKTISKDNGVRVST 279
A ++R EQD YA+ S+T ++ A E G + +++P+ V D + +D +
Sbjct: 180 AKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVD 239
Query: 280 PEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQ 339
++ KLK F K +G+VTAAN+S L DGA+A V+MT AK+L + P A + F +
Sbjct: 240 FSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAV 299
Query: 340 DPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGR 399
+P D + P YA VL+ GL DI WEV+EAF+ +LAN+K ++
Sbjct: 300 EPID-FPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEI---------- 348
Query: 400 SSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGV 459
D K N GG++S+GHP +G R+ H + L + G++GL + C GG
Sbjct: 349 -------DPQKVNINGGAVSLGHPIGMSGARIVGHLTHAL--KQGEYGLASICNGGGGAS 399
Query: 460 GMIIER 465
M+I++
Sbjct: 400 AMLIQK 405
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 194/427 (45%), Gaps = 44/427 (10%)
Query: 45 TGKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQE 104
T K +V V RTP + + A +L ++ G ++K GI K+ + G V+Q
Sbjct: 6 TLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 65
Query: 105 VKTSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMS 164
+ R+A L AG TP T+ S + E MS
Sbjct: 66 GEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 165 DIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADR 224
++P N+ TP +KL I D + + + MG A+
Sbjct: 126 NVPYVM-----------NRGSTPYGGVKLEDLIVKD-------GLTDVYNKIHMGSCAEN 167
Query: 225 LAAAFKVSRKEQDEYALRSHTLAQQAQEKG-YLTDILPIQVG-----DKTISKDNGVRVS 278
A ++R EQD YA+ S+T ++ A E G + +++P+ V D + +D +
Sbjct: 168 TAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRV 227
Query: 279 TPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVS 338
++ KLK F K +G+VTAAN+S L DGA+A V+MT AK+L + P A + F +
Sbjct: 228 DFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA 287
Query: 339 QDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMG 398
+P D + P YA VL+ GL DI WEV+EAF+ +LAN+K ++
Sbjct: 288 VEPID-FPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEI--------- 337
Query: 399 RSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQG 458
D K N GG++S+GHP +G R+ H + L + G++GL + C GG
Sbjct: 338 --------DPQKVNINGGAVSLGHPIGMSGARIVGHLTHAL--KQGEYGLASICNGGGGA 387
Query: 459 VGMIIER 465
M+I++
Sbjct: 388 SAMLIQK 394
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEADEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 198/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG+P A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG P A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 1 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 61 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 120
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 121 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 163
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 164 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 223
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 224 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 282
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 283 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 329
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 330 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 384
Query: 462 IIE 464
IE
Sbjct: 385 CIE 387
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 206/451 (45%), Gaps = 68/451 (15%)
Query: 31 SHNVY----SPRKSVKDKTGKNIVFVDGVRTPFLLSGTD-YANMMAHELARHSLIGILQK 85
+ N+Y +P+ S D +V V G RT +G + + EL + +L+
Sbjct: 15 TENLYFQSMAPQASAAD-----VVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKD 69
Query: 86 TGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXX 145
+ + + I G V+Q + + R A + + P TV C S Q
Sbjct: 70 VNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAG 129
Query: 146 XXXXXXXXXXXXXXXEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPE 205
E MS + + S L+ KA+ D IP
Sbjct: 130 GIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKAR--------------DCLIP- 174
Query: 206 LPAVAEFSSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKG-YLTDILPIQV 264
MG +++ +A F +SR++QD +AL S A +AQ KG + +I+P+
Sbjct: 175 ------------MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTT 222
Query: 265 ------GDK---TISKDNGVRVSTP-EQMAKLKPAFVKPHGSVTAANSSFLTDGASACVI 314
G K T+++D G+R ST E +AKLKPAF K GS TA NSS ++DGA+A ++
Sbjct: 223 TVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAF-KKDGSTTAGNSSQVSDGAAAILL 281
Query: 315 MTEAKAKQLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHE 374
+KA++LGL LR + V P D + +GPAYA P L++AGL++SD+D +E++E
Sbjct: 282 ARRSKAEELGLPILGVLRSYAVVGV-PPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINE 340
Query: 375 AFAGQILANLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVH 434
AFA Q ++ K+ +P K N GG++++GHP TG R +
Sbjct: 341 AFASQAAYCVE----------------KLRLPP-EKVNPLGGAVALGHPLGCTGARQVIT 383
Query: 435 AANRLVREDGQ-FGLIAACAAGGQGVGMIIE 464
N L R + +G+++ C G G + E
Sbjct: 384 LLNELKRRGKRAYGVVSMCIGTGMGAAAVFE 414
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG+P A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 196/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG P A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 196/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG P A+G R+ + R + GL GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLXIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 196/440 (44%), Gaps = 70/440 (15%)
Query: 46 GKNIVFVDGVRTPFLLSGT-DYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQE 104
G ++V V RTP S ++ + +L L +++KT ++ + IV GTV+
Sbjct: 12 GDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAP 71
Query: 105 -VKTSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFM 163
+ ++ R AA AGF + TV C S Q E M
Sbjct: 72 GSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 131
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGET----MG 219
+ P+ + PAV +F+ + MG
Sbjct: 132 TTNPMAWEGSVN-------------------------------PAVKKFAQAQNCLLPMG 160
Query: 220 HSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV-------GDK---T 268
+++ +A F VSR+EQD+ A+ SH A A G D I+P++ GD+ T
Sbjct: 161 VTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPIT 220
Query: 269 ISKDNGVR-VSTPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKP 327
+S D+G+R +T + KLKP F K G+ TA NSS ++DGA A ++M + A Q GL
Sbjct: 221 VSVDDGIRPTTTLASLGKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPV 279
Query: 328 KAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAM 387
R F V DP + +GPA A P ++ AGL L DID +E++EAFA Q +
Sbjct: 280 LGVFRTFAAVGVDPA-IMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFV------ 332
Query: 388 DSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVR--EDGQ 445
+ +N +G D K N GG+++IGHP ATG R + + R +D +
Sbjct: 333 ----YCRNKLGL-------DPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCR 381
Query: 446 FGLIAACAAGGQGVGMIIER 465
FG+++ C G G + ER
Sbjct: 382 FGVVSMCIGTGMGAAAVFER 401
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 196/440 (44%), Gaps = 70/440 (15%)
Query: 46 GKNIVFVDGVRTPFLLSGT-DYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQE 104
G ++V V RTP S ++ + +L L +++KT ++ + IV GTV+
Sbjct: 29 GDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAP 88
Query: 105 -VKTSNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFM 163
+ ++ R AA AGF + TV C S Q E M
Sbjct: 89 GSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 148
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGET----MG 219
+ P+ + PAV +F+ + MG
Sbjct: 149 TTNPMAWEGSVN-------------------------------PAVKKFAQAQNCLLPMG 177
Query: 220 HSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV-------GDK---T 268
+++ +A F VSR+EQD+ A+ SH A A G D I+P++ GD+ T
Sbjct: 178 VTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPIT 237
Query: 269 ISKDNGVR-VSTPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKP 327
+S D+G+R +T + KLKP F K G+ TA NSS ++DGA A ++M + A Q GL
Sbjct: 238 VSVDDGIRPTTTLASLGKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPV 296
Query: 328 KAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAM 387
R F V DP + +GPA A P ++ AGL L DID +E++EAFA Q +
Sbjct: 297 LGVFRTFAAVGVDPA-IMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFV------ 349
Query: 388 DSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVR--EDGQ 445
+ +N +G D K N GG+++IGHP ATG R + + R +D +
Sbjct: 350 ----YCRNKLGL-------DPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCR 398
Query: 446 FGLIAACAAGGQGVGMIIER 465
FG+++ C G G + ER
Sbjct: 399 FGVVSMCIGTGMGAAAVFER 418
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 195/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E +EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IG P A+G R+ + R + GL GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLXIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 23/248 (9%)
Query: 218 MGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGDKTISK-DNGV 275
MG + + +AA FK+SRK+QDE+A S+ A +A+ +G D ILPI++ D +I + D G
Sbjct: 162 MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGP 221
Query: 276 RVS-TPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDF 334
R + T E ++ ++PAF+K G+ TA N+S ++DG + ++ + A QL L DF
Sbjct: 222 RPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDF 281
Query: 335 VYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAK 394
V P + + +GPAYA P+VLE GL + DID +E++EAFA Q L +
Sbjct: 282 QTVGV-PPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIH--------- 331
Query: 395 NYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAA 454
K+G+ DLNK N GG++++GHP TG R V R +++D Q G+++ C
Sbjct: 332 -------KLGI-DLNKVNPRGGAIALGHPLGCTGAR-QVATILRELKKD-QIGVVSMCIG 381
Query: 455 GGQGVGMI 462
G G I
Sbjct: 382 TGMGAAAI 389
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 23/248 (9%)
Query: 218 MGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGDKTISK-DNGV 275
MG + + +AA FK+SRK+QDE+A S+ A +A+ +G D ILPI++ D +I + D G
Sbjct: 159 MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGP 218
Query: 276 RVS-TPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDF 334
R + T E ++ ++PAF+K G+ TA N+S ++DG + ++ + A QL L DF
Sbjct: 219 RPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDF 278
Query: 335 VYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAK 394
V P + + +GPAYA P+VLE GL + DID +E++EAFA Q L +
Sbjct: 279 QTVGV-PPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIH--------- 328
Query: 395 NYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAA 454
K+G+ DLNK N GG++++GHP TG R V R +++D Q G+++ C
Sbjct: 329 -------KLGI-DLNKVNPRGGAIALGHPLGCTGAR-QVATILRELKKD-QIGVVSMCIG 378
Query: 455 GGQGVGMI 462
G G I
Sbjct: 379 TGMGAAAI 386
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 197/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + C S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 196/423 (46%), Gaps = 42/423 (9%)
Query: 48 NIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKT 107
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIP 167
N R+AA+ AG + A + S + E MS P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
H +R + + K++ T+ D + + G MG +A+ +A
Sbjct: 124 --HCAHLRGGVKMGD--------FKMIDTMIKD-------GLTDAFYGYHMGTTAENVAK 166
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR-VSTPE 281
+++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D +R +T +
Sbjct: 167 QWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLD 226
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDP 341
MAKL+PAF K G+VTA N+S L DGA+A ++M+EA+A + G++P + + V DP
Sbjct: 227 SMAKLRPAFDK-EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSS 401
K + GP A+ + LERAG + D+D E EAFA Q A K D W
Sbjct: 286 K-VMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNK--DLGW---------- 332
Query: 402 KVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGVGM 461
D + N GG+++IGHP A+G R+ + R + GL C GG GV M
Sbjct: 333 -----DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAM 387
Query: 462 IIE 464
IE
Sbjct: 388 CIE 390
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 129/463 (27%), Positives = 201/463 (43%), Gaps = 65/463 (14%)
Query: 19 TITNMSLKSICTSHNVYSPRKSVKDKTGKNIVFVDGVRTPFLLSGTD-YANMMAHELARH 77
++ N+S+ + R SV G ++V V R+P + + ++
Sbjct: 8 SLENLSVSVCAAGDSAAYQRNSV---FGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAP 64
Query: 78 SLIGILQKTGISKDLIDYIVYGTVIQE-VKTSNIGREAALSAGFSDKTPAHTVTMACISS 136
L +++KT I+ + IV G+V+ + ++ R AA AGF + P TV C S
Sbjct: 65 VLKALIEKTNINPAEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 124
Query: 137 NQXXXXXXXXXXXXXXXXXXXXXXEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLAT 196
Q E M+ P+ + ++K +A
Sbjct: 125 LQAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEGSVNP-------------KVKTMAQ 171
Query: 197 IRPDFFIPELPAVAEFSSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYL 256
+ D +P MG +++ +A F ++R+EQD+ A+ SH A G
Sbjct: 172 AQ-DCLLP-------------MGITSENVAQKFSITRQEQDQAAVGSHRKTAAATAAGRF 217
Query: 257 TD-ILPIQV-------GDK---TISKDNGVRVSTP-EQMAKLKPAFVKPHGSVTAANSSF 304
D I+PI+ GD+ TIS D+G+R T +AKLKP F K GS TA SS
Sbjct: 218 KDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPVFRK-DGSTTAGTSSQ 276
Query: 305 LTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSL 364
++DGA A ++M + A Q GL R F V P + +GPA A P ++ AGL +
Sbjct: 277 VSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGV-PPSIMGIGPAVAIPAAVKAAGLQI 335
Query: 365 SDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPF 424
DID +E++EAFA Q + K ++ D K N GG+++IGHP
Sbjct: 336 DDIDLFEINEAFASQFVYCQKKLEI-----------------DPQKINVNGGAMAIGHPL 378
Query: 425 AATGVRLTVHAANRLVR--EDGQFGLIAACAAGGQGVGMIIER 465
ATG R + + R D +FG+++ C G G + ER
Sbjct: 379 GATGARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFER 421
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 192/435 (44%), Gaps = 62/435 (14%)
Query: 49 IVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTS 108
+V V RT A + +L + +L++ ++ + + +++G V+
Sbjct: 8 VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67
Query: 109 NIGREAALSAGFSDKTPAHTVTMACISSNQXXXXXXXXXXXXXXXXXXXXXXEFMSDIPI 168
N R+A++ AG PA + M S + E MS P
Sbjct: 68 NPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAP- 126
Query: 169 RHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAV-AEFSSGET-------MGH 220
H LA +R I E+P + G T MG
Sbjct: 127 -H-----------------------LAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGI 162
Query: 221 SADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYL-TDILPIQVGDK----TISKDNGV 275
+A+ +A ++VSR++QD+ A+ S + AQ+ G+ +I+P+ V + + D
Sbjct: 163 TAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFP 222
Query: 276 R-VSTPEQMAKLKPAFVKPH-GSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRD 333
R S E M+KLKP F+ G+VT AN+S + DGA+A V+M +++A + GL P A +
Sbjct: 223 RHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVS 282
Query: 334 FVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFA 393
+ V +P + +GP A Q + +AG SL D+D +E++EAFA A +K +
Sbjct: 283 WSQVGVEP-SIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELG----- 336
Query: 394 KNYMGRSSKVGVPDLN--KFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAA 451
LN K N GG++++GHP A+G R+ V + L R G+ A
Sbjct: 337 --------------LNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGVAAL 382
Query: 452 CAAGGQGVGMIIERH 466
C GG G+ M ++R
Sbjct: 383 CIGGGMGIAMCVQRE 397
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 131/271 (48%), Gaps = 42/271 (15%)
Query: 219 GHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLT-DILPI--QVGDKTISKDNGV 275
G AD +A SR++ D YALRS A A GY ++P+ Q G + D +
Sbjct: 154 GIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHM 213
Query: 276 RV-STPEQMAKLKPAF--VKPHGSV------------------TAANSSFLTDGASACVI 314
R +T E +AKLK AF V G T NSS + DGA+ ++
Sbjct: 214 RPDTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLV 273
Query: 315 MTEAKAKQLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHE 374
+E K GL P+A + DP +L GP AT +VL+RAGL++ DID +E++E
Sbjct: 274 GSEKAGKSQGLTPRARIVATATSGSDPV-IMLTGPTPATRKVLDRAGLTIDDIDLFELNE 332
Query: 375 AFAGQILANLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVH 434
AFA +L F K+ + +PD K N GG++++GHP ATG +T
Sbjct: 333 AFASVVLK---------FQKD-------LNIPD-EKLNVNGGAIAMGHPLGATGAMITGT 375
Query: 435 AANRLVREDGQFGLIAACAAGGQGVGMIIER 465
+ L R + + LI C GG GV IIER
Sbjct: 376 MVDELERRNARRALITLCIGGGMGVATIIER 406
>pdb|2HTV|A Chain A, N4 Neuraminidase
pdb|2HTV|B Chain B, N4 Neuraminidase
pdb|2HTW|A Chain A, N4 Neuraminidase In Complex With Dana
Length = 390
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 258 DILPIQVGDKTISKDNGVRVSTPEQMAKLKPAFVKPHGSVTAANSSFLTDGA 309
D+ P++ G +SKDNG+R+ + ++ ++ F+ S+ + FLT GA
Sbjct: 9 DLCPVK-GWAPLSKDNGIRIGSRGEVFVIREPFISC--SINECRTFFLTQGA 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,719,477
Number of Sequences: 62578
Number of extensions: 496290
Number of successful extensions: 1568
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 84
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)