RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1213
(472 letters)
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 325 bits (836), Expect = e-108
Identities = 138/431 (32%), Positives = 208/431 (48%), Gaps = 58/431 (13%)
Query: 47 KNIVFVDGVRTPF-LLSGTDYANMMAHELARHSLIGILQKT-GISKDLIDYIVYGTVIQE 104
+ +V VD +RTP G + N+ A +L+ H + +L + ++ +D I +G V Q
Sbjct: 2 EQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 105 VKTS-NIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFM 163
++ NI R AAL A PA TV C SS Q + +I G V + GGVE M
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHM 121
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSAD 223
+P+ H L R MG +A+
Sbjct: 122 GHVPMSHGVDFHPGLSRNV----------------AKAAGM-------------MGLTAE 152
Query: 224 RLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGDK-----TISKDNGVRV 277
L+ +SR+ QD++A RSH A A + G I+P D + D +R
Sbjct: 153 MLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRP 212
Query: 278 -STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVY 336
+T E ++ L+PAF G+VTA SS L+DGA+A ++M+E++A++LGLKP+A +R
Sbjct: 213 ETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAV 272
Query: 337 VSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNY 396
V DP + GP A+ L++AGLS SDID +E++EAFA QIL +K +
Sbjct: 273 VGCDPS-IMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDL--------- 322
Query: 397 MGRSSKVGVPD--LNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAA 454
G+ + K N GG++++GHP +G R++ N + R+D QFGL C
Sbjct: 323 -------GLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDAQFGLATMCIG 375
Query: 455 GGQGVGMIIER 465
GQG+ + ER
Sbjct: 376 LGQGIATVFER 386
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 322 bits (828), Expect = e-106
Identities = 135/447 (30%), Positives = 206/447 (46%), Gaps = 64/447 (14%)
Query: 36 SPRKSVKDKTGKNIVFVDGVRTPFLLS--GTDYANMMAHELARHSLIGILQKTGISKDLI 93
S G ++V V RTP S G + + +L L +++KT ++ +
Sbjct: 19 SAAYQRTSLYGDDVVIVAAHRTPLCKSKRGN-FKDTYPDDLLAPVLRALIEKTNLNPSEV 77
Query: 94 DYIVYGTVIQE-VKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAY 152
IV GTV+ + ++ R AA AGF + TV C S Q + I AG Y
Sbjct: 78 GDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFY 137
Query: 153 DVVVAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEF 212
D+ + G+E M+ P+ + + + +A + +P
Sbjct: 138 DIGIGAGLESMTTNPMAWEGSVNPAVKKFAQA--------------QNCLLP-------- 175
Query: 213 SSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV------- 264
MG +++ +A F VSR+EQD+ A+ SH A A G D I+P++
Sbjct: 176 -----MGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKT 230
Query: 265 GDK---TISKDNGVRVST-PEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKA 320
GD+ T+S D+G+R +T + KLKP F K G+ TA NSS ++DGA A ++M + A
Sbjct: 231 GDEKPITVSVDDGIRPTTTLASLGKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVA 289
Query: 321 KQLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQI 380
Q GL R F V DP + +GPA A P ++ AGL L DID +E++EAFA Q
Sbjct: 290 MQKGLPVLGVFRTFAAVGVDP-AIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQF 348
Query: 381 LANLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLV 440
+ K+G+ D K N GG+++IGHP ATG R + +
Sbjct: 349 VYCRN----------------KLGL-DPEKINVNGGAMAIGHPLGATGARCVATLLHEMK 391
Query: 441 R--EDGQFGLIAACAAGGQGVGMIIER 465
R +D +FG+++ C G G + ER
Sbjct: 392 RRGKDCRFGVVSMCIGTGMGAAAVFER 418
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 320 bits (823), Expect = e-106
Identities = 131/457 (28%), Positives = 209/457 (45%), Gaps = 59/457 (12%)
Query: 22 NMSLKSICTSHNVYSPRKSVKDKTGKNIVFVDGVRTPFLLSGT-DYANMMAHELARHSLI 80
+ + + + ++V V G RT +G + + EL +
Sbjct: 5 HHHSSGVDLGTENLYFQSMAPQASAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMT 64
Query: 81 GILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGI 140
+L+ + + + I G V+Q + + R A + + P TV C S Q +
Sbjct: 65 AVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAV 124
Query: 141 TTGIGLIAAGAYDVVVAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPD 200
+ G I G+YD+ +A GVE MS + + S L+ KA D
Sbjct: 125 ASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKA--------------RD 170
Query: 201 FFIPELPAVAEFSSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-I 259
IP MG +++ +A F +SR++QD +AL S A +AQ KG I
Sbjct: 171 CLIP-------------MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEI 217
Query: 260 LPIQV---------GDKTISKDNGVRVS-TPEQMAKLKPAFVKPHGSVTAANSSFLTDGA 309
+P+ T+++D G+R S T E +AKLKPAF K GS TA NSS ++DGA
Sbjct: 218 VPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAF-KKDGSTTAGNSSQVSDGA 276
Query: 310 SACVIMTEAKAKQLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDA 369
+A ++ +KA++LGL LR + V P D + +GPAYA P L++AGL++SD+D
Sbjct: 277 AAILLARRSKAEELGLPILGVLRSYAVVGVPP-DIMGIGPAYAIPVALQKAGLTVSDVDI 335
Query: 370 WEVHEAFAGQILANLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGV 429
+E++EAFA Q ++ K+ + K N GG++++GHP TG
Sbjct: 336 FEINEAFASQAAYCVE----------------KLRL-PPEKVNPLGGAVALGHPLGCTGA 378
Query: 430 RLTVHAANRLVREDGQ-FGLIAACAAGGQGVGMIIER 465
R + N L R + +G+++ C G G + E
Sbjct: 379 RQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFEY 415
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 319 bits (819), Expect = e-106
Identities = 137/429 (31%), Positives = 207/429 (48%), Gaps = 54/429 (12%)
Query: 47 KNIVFVDGVRTPF-LLSGTDYANMMAHELARHSLIGILQK-TGISKDLIDYIVYGTVIQE 104
+++V VD RTP G + N A +++ H + +L++ + + ++ +++G V Q
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQT 64
Query: 105 VKTS-NIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFM 163
++ NI R A+L + A TV+ C SS + T I G DV V GGVE M
Sbjct: 65 LEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSAD 223
+ + H P L A + MG +A+
Sbjct: 125 GHVSMMH-----------GVDPNPHMSLY-----------------AAKA-SGMMGLTAE 155
Query: 224 RLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGDK-----TISKDNGVRV 277
L +SR++QD +A+RSH LA +A +G D I+P+Q D+ D +R
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRP 215
Query: 278 -STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVY 336
+T E +A LKPAF G+VTA SS +TDGAS ++M+ +AK LGL+P A +R
Sbjct: 216 DTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAV 275
Query: 337 VSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNY 396
DP + GP AT + L+RAGL+++DID E++EAFA Q L LK +
Sbjct: 276 AGVDPA-IMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDL--------- 325
Query: 397 MGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGG 456
KV K N GG++++GHPF +G R++ N + + G FGL C G
Sbjct: 326 -----KVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGGTFGLSTMCIGLG 380
Query: 457 QGVGMIIER 465
QG+ + ER
Sbjct: 381 QGIATVFER 389
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 317 bits (814), Expect = e-105
Identities = 119/439 (27%), Positives = 190/439 (43%), Gaps = 58/439 (13%)
Query: 38 RKSVKDKTGKNIVFVDGVRTPFLLSGTDY----ANMMAHELARHSLIGILQK----TGIS 89
+ S+ +K +++V V R+ G + ++ L + L + +
Sbjct: 1 KNSLLEKRPEDVVIVAANRSAI---GKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRAD 57
Query: 90 KDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAA 149
+LI+ + G V+ + R A L++G TP + C S + I
Sbjct: 58 LNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKV 117
Query: 150 GAYDVVVAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAV 209
G D+ +A GVE M++ N + IP
Sbjct: 118 GQIDIGLALGVESMTNNY-----------KNVNPLGMISSEELQKNREAKKCLIP----- 161
Query: 210 AEFSSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGD-K 267
MG + + +AA FK+SRK+QDE+A S+ A +A+ +G D ILPI++ D
Sbjct: 162 --------MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS 213
Query: 268 TISKDNGVRV-STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLK 326
D G R T E ++ ++PAF+K G+ TA N+S ++DG + ++ + A QL L
Sbjct: 214 ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLP 273
Query: 327 PKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKA 386
DF V P + + +GPAYA P+VLE GL + DID +E++EAFA Q L +
Sbjct: 274 VLGRYIDFQTVGVPP-EIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHK 332
Query: 387 MDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQF 446
+ DLNK N GG++++GHP TG R L + Q
Sbjct: 333 L--GI---------------DLNKVNPRGGAIALGHPLGCTGARQVATILRELKK--DQI 373
Query: 447 GLIAACAAGGQGVGMIIER 465
G+++ C G G I +
Sbjct: 374 GVVSMCIGTGMGAAAIFIK 392
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 314 bits (806), Expect = e-103
Identities = 148/430 (34%), Positives = 210/430 (48%), Gaps = 52/430 (12%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
N+V VR+P G N+ ELA L +++ G+ +D ++ G IQ
Sbjct: 5 HNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
+N R AAL+AGF D +T+ C S Q I + I G +VVVAGGVE MS
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSS 124
Query: 167 P--IRHSR---KMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHS 221
P ++ R +++ + T + L D MG +
Sbjct: 125 PYALKQHRWGQRLQHGEI----RDTVWEVL-------EDPI-----------HHIMMGET 162
Query: 222 ADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVR 276
A+ L ++++R+EQDE ALRSHTLA +A E GY D I+PI + + SKD R
Sbjct: 163 AENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPR 222
Query: 277 V-STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFV 335
T E++A LKPAF + GSVTA N+S L DG++ V+M+E KAK+ GL+P A + +
Sbjct: 223 ADITAEKLAGLKPAF-RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYS 281
Query: 336 YVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKN 395
DPK + +GPA A + LE+ SL D D E++EAFA Q LA K + +
Sbjct: 282 VAGVDPK-IMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKEL--DL---- 334
Query: 396 YMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAG 455
D K N G + +GHP TG R+TV + L R + G+ + C G
Sbjct: 335 -----------DREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRGLEKGIASLCVGG 383
Query: 456 GQGVGMIIER 465
G GV + IE
Sbjct: 384 GIGVALFIEA 393
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 310 bits (796), Expect = e-102
Identities = 131/435 (30%), Positives = 214/435 (49%), Gaps = 61/435 (14%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
+ +V RT G + ++ A EL + +++ I+ D+ID + G V+
Sbjct: 7 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
NI R+ AL AG + PA T+ + C S + ++ LIA G D+++ GG E MS
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 167 P--IRHSR--------KMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGE 216
P + +R +++ D L D F +
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIK--------DGLS-------DIF-----------NNY 160
Query: 217 TMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISK 271
MG +A+ +A + ++R+EQDE AL S A++AQ +G + I+P+ + GD + K
Sbjct: 161 HMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDK 220
Query: 272 DNGVRV-STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAY 330
D ++ +T E++AKL+PAF K G+VTA N+S + DGA+ V+M + KA++LG++P A
Sbjct: 221 DEYIKPGTTMEKLAKLRPAF-KKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLAT 279
Query: 331 LRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSE 390
+ + DPK + GP AT + LE A +++ DID E +EAFA Q +A ++ +
Sbjct: 280 IVSYGTAGVDPKI-MGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDL--N 336
Query: 391 WFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIA 450
D+NK N GG+++IGHP +G R+ + R D + GL
Sbjct: 337 I---------------DMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRRDAKTGLAT 381
Query: 451 ACAAGGQGVGMIIER 465
C GG G +I++R
Sbjct: 382 LCIGGGMGTTLIVKR 396
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 309 bits (795), Expect = e-102
Identities = 131/426 (30%), Positives = 205/426 (48%), Gaps = 35/426 (8%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQE-V 105
V+ VRTP G A++ +L H+L ++ ++G+ K+ ++ + G Q
Sbjct: 2 PEAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 106 KTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSD 165
N+ R A L AGF + TV C S + + I AG V + GVE MS
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 166 IPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRL 225
P K N L + T F+ P + E+MG +A+ L
Sbjct: 122 APY-AVPKPERGFPTGN--------LVMYDTTLGWRFV--NPKMQALYGTESMGETAENL 170
Query: 226 AAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDNGVRV-ST 279
A + + R+EQD +AL SH A +A E+G D ++P+ V + + +D G R ++
Sbjct: 171 AEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTS 230
Query: 280 PEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQ 339
E++A L+P F + G+VTA NSS L DGA+A +++++ AK GL+P A +R
Sbjct: 231 LEKLAALRPVF-REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGV 289
Query: 340 DPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWFAKNYMGR 399
P+ + +GP AT + LERAGLS SD+ E++EAFA Q LA L+
Sbjct: 290 PPR-IMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSM-------- 340
Query: 400 SSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAACAAGGQGV 459
+ + N GG++++GHP A+G R+ + + R QFGL C GQG+
Sbjct: 341 -------EDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKVQFGLATMCIGVGQGI 393
Query: 460 GMIIER 465
+++E
Sbjct: 394 AVVVEG 399
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 303 bits (780), Expect = e-100
Identities = 133/436 (30%), Positives = 216/436 (49%), Gaps = 62/436 (14%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
K++V V VRTP G + N A +L ++ + + G++ ID ++ G V+Q
Sbjct: 5 KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
N+ R+ A++AG + P++TV C S + + I +G DVV+AGG E MS
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 167 P--IRHSR--------KMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGE 216
P + +R M +L D L D F +
Sbjct: 125 PYIVPTARFGSKMGNITMVDSMLT--------DGLI-------DAF-----------NQY 158
Query: 217 TMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQVGDK-----TIS 270
MG +A+ +A F+ +R+ QD+ AL S A+ A + + I+P+ V + TI
Sbjct: 159 HMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETID 218
Query: 271 KDNGVRV-STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKA 329
KD ++ T E ++KLKPAF K G+VTA N+S + DGA+ ++M++ KA +LG++P A
Sbjct: 219 KDEYPKLGMTFEGLSKLKPAF-KKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLA 277
Query: 330 YLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDS 389
++ + +P+ + GP AT + L++AGLS++DID E +EAFA Q LA +
Sbjct: 278 KIKSYASAGVEPEV-MGTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNEL-- 334
Query: 390 EWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLI 449
+ D +K N GG++++GHP A+G R+ V + + + GL
Sbjct: 335 QI---------------DSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKRKVETGLA 379
Query: 450 AACAAGGQGVGMIIER 465
C GGQG+ M++ R
Sbjct: 380 TLCIGGGQGISMVVSR 395
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 295 bits (759), Expect = 1e-96
Identities = 121/444 (27%), Positives = 184/444 (41%), Gaps = 75/444 (16%)
Query: 50 VFVDGVRTPF--LLSGTDYANMMAHELARHSLIGILQ-KTGISKDLIDYIVYGTVIQEVK 106
+ +RTP +G+ + L + + + + + LI ++ G V
Sbjct: 10 FIYEAIRTPRGKQKNGS-LTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVGD 68
Query: 107 -TSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSD 165
+I R A L+AG + T + C S + + T + +G D+V+AGGVE MS
Sbjct: 69 QGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSR 128
Query: 166 IPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRL 225
+P+ F+P G AD +
Sbjct: 129 VPM-------------GSDGGAWATDPETN--YRIGFVP-------------QGIGADLI 160
Query: 226 AAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV--GDKTISKDNGVRV-STPE 281
A SR++ D YALRS A A GY ++P++ G + D +R +T E
Sbjct: 161 ATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTME 220
Query: 282 QMAKLKPAF--------------------VKPHGSVTAANSSFLTDGASACVIMTEAKAK 321
+AKLK AF K + T NSS + DGA+ ++ +E K
Sbjct: 221 GLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGK 280
Query: 322 QLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQIL 381
GL P+A + DP +L GP AT +VL+RAGL++ DID +E++EAFA +L
Sbjct: 281 SQGLTPRARIVATATSGSDP-VIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVL 339
Query: 382 ANLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVR 441
K ++ K N GG++++GHP ATG +T + L R
Sbjct: 340 KFQKDLN-----------------IPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELER 382
Query: 442 EDGQFGLIAACAAGGQGVGMIIER 465
+ + LI C GG GV IIER
Sbjct: 383 RNARRALITLCIGGGMGVATIIER 406
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 295 bits (757), Expect = 2e-96
Identities = 136/433 (31%), Positives = 209/433 (48%), Gaps = 58/433 (13%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGE 62
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
N R+AA+ AG + A + C S + + G+ IA G ++VAGG+E MS
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 167 PIRHSRKMRSLLLRANKAKTPADRL---KLLATIRPD-----FFIPELPAVAEFSSGETM 218
P H +R ++ K++ T+ D F G M
Sbjct: 123 P--HCAHLRG-----------GVKMGDFKMIDTMIKDGLTDAF------------YGYHM 157
Query: 219 GHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTISKDN 273
G +A+ +A +++SR EQD +A+ S A+ AQ+ G D I+P V GD T+ D
Sbjct: 158 GTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADE 217
Query: 274 GVRV-STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLR 332
+R +T + MAKL+PAF G+VTA N+S L DGA+A ++M+EA+A + G++P +
Sbjct: 218 YIRHGATLDSMAKLRPAF-DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIV 276
Query: 333 DFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMDSEWF 392
+ V DPK + GP A+ + LERAG + D+D E +EAFA Q A K + W
Sbjct: 277 SWATVGVDPKV-MGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDL--GW- 332
Query: 393 AKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGLIAAC 452
D + N GG+++IGHP A+G R+ + R + GL C
Sbjct: 333 --------------DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLC 378
Query: 453 AAGGQGVGMIIER 465
GG GV M IE
Sbjct: 379 IGGGMGVAMCIES 391
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 285 bits (733), Expect = 9e-93
Identities = 121/437 (27%), Positives = 201/437 (45%), Gaps = 58/437 (13%)
Query: 44 KTGKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQ 103
+V V RT A + +L + +L++ ++ + + +++G V+
Sbjct: 3 AGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLA 62
Query: 104 EVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFM 163
N R+A++ AG PA + M C S + + + I G +VVAGG+E M
Sbjct: 63 AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENM 122
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRL---KLLATIRPD-----FFIPELPAVAEFSSG 215
S P H +R+ ++ L +I D F
Sbjct: 123 SKAP--HLAYLRT-----------GVKIGEMPLTDSILCDGLTDAF------------HN 157
Query: 216 ETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV----GDKTIS 270
MG +A+ +A ++VSR++QD+ A+ S + AQ+ G+ I+P+ V G +
Sbjct: 158 CHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVK 217
Query: 271 KDNGVRV-STPEQMAKLKPAFVK-PHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPK 328
D R S E M+KLKP F+ G+VT AN+S + DGA+A V+M +++A + GL P
Sbjct: 218 TDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPL 277
Query: 329 AYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMD 388
A + + V +P + +GP A Q + +AG SL D+D +E++EAFA A +K +
Sbjct: 278 ARIVSWSQVGVEPSI-MGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELG 336
Query: 389 SEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFGL 448
+ K N GG++++GHP A+G R+ V + L R G+
Sbjct: 337 --L---------------NPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGV 379
Query: 449 IAACAAGGQGVGMIIER 465
A C GG G+ M ++R
Sbjct: 380 AALCIGGGMGIAMCVQR 396
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 281 bits (722), Expect = 4e-91
Identities = 131/438 (29%), Positives = 204/438 (46%), Gaps = 60/438 (13%)
Query: 42 KDKTGKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTV 101
T K +V V RTP + + A +L ++ G ++K GI K+ + G V
Sbjct: 3 SKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNV 62
Query: 102 IQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+Q + R+A L AG TP T+ C S + I + G DV+VAGG+E
Sbjct: 63 LQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGME 122
Query: 162 FMSDIPIRHSRKMRSLLLRANKAKTPADRL---KLLATIRPD-----FFIPELPAVAEFS 213
MS++P + ++ R + KL I D +
Sbjct: 123 SMSNVP--Y------VMNRGST------PYGGVKLEDLIVKDGLTDVY------------ 156
Query: 214 SGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTD-ILPIQV-----GDK 267
+ MG A+ A ++R EQD YA+ S+T ++ A E G + ++P+ V D
Sbjct: 157 NKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDV 216
Query: 268 TISKDNGVRVSTPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKP 327
+ +D + ++ KLK F K +G+VTAAN+S L DGA+A V+MT AK+L + P
Sbjct: 217 VVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTP 276
Query: 328 KAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAM 387
A + F + +P D + P YA VL+ GL DI WEV+EAF+ +LAN+K +
Sbjct: 277 LARIVAFADAAVEPID-FPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKML 335
Query: 388 DSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFG 447
+ D K N GG++S+GHP +G R+ H + L + G++G
Sbjct: 336 E--I---------------DPQKVNINGGAVSLGHPIGMSGARIVGHLTHAL--KQGEYG 376
Query: 448 LIAACAAGGQGVGMIIER 465
L + C GG M+I++
Sbjct: 377 LASICNGGGGASAMLIQK 394
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 8e-10
Identities = 62/431 (14%), Positives = 124/431 (28%), Gaps = 140/431 (32%)
Query: 5 LTKKIIKNALNVPQTITNMSLKSICTSHNVYSPRKSVKDKTGKNIV--FVDGVRTPFLLS 62
L+K+ I + + ++ + K + +V FV+ V
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWT-----------LLSK-QEEMVQKFVEEVLRI---- 89
Query: 63 GTDYANMMAHELARHSLIGILQKTGISKDLIDYI--VYGTVIQEVKTSNIGRE---AALS 117
+Y + + Q + +++ I+ +Y Q N+ R L
Sbjct: 90 --NY-KFLMSPIKTEQ----RQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLR 141
Query: 118 AGFSDKTPAHTVT---MACISSNQGITTGIG---LIAAGAYDVVV----AGGVEFMSDIP 167
+ PA V + G G + V + +++
Sbjct: 142 QALLELRPAKNVLIDGVL----------GSGKTWVALDVCLSYKVQCKMDFKIFWLN--- 188
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
+++ ++L KLL I P++ + ++ SS +
Sbjct: 189 LKNCNSPETVLEMLQ---------KLLYQIDPNW-----TSRSDHSSNIKL--------- 225
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTDILPIQVGDKTISK--DNGVRVSTPEQMAK 285
R + LR L + E L +L V + + ++
Sbjct: 226 -----RIHSIQAELR-RLLKSKPYENCLL--VLL-NVQNAKAWNAFNLSCKI-------- 268
Query: 286 LKPAFVKPHGSVTAANSSFLTDGASACVI-----------MTEAKAKQLGLKPKAYLRDF 334
L +T +TD SA +T + K L LK
Sbjct: 269 L----------LTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-------- 309
Query: 335 VYVSQDPKDQLLLGPAYAT---PQVLERAGLSLSD-IDAWE-----VHEAFAGQILANLK 385
Y+ P+D L P P+ L S+ D + W+ + I ++L
Sbjct: 310 -YLDCRPQD-L---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 386 AMDSEWFAKNY 396
++ + K +
Sbjct: 365 VLEPAEYRKMF 375
Score = 44.5 bits (104), Expect = 8e-05
Identities = 37/272 (13%), Positives = 75/272 (27%), Gaps = 81/272 (29%)
Query: 161 EFMSDIPIRH-SRKMRSLLLRAN-----KAKTPADRLKLLATIRPDFFIPELPAVAEFSS 214
F+ + + +S+L + +K L F+ S
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL------FWTLL-------SK 74
Query: 215 GETMGHSADRLAAAFKVSRKEQDEY-----ALRSHTLAQQAQEKGYLTDILPIQVGDKTI 269
E + F V + Y +++ + Y+ + ++
Sbjct: 75 QE-------EMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 270 SKDNGVRVSTPEQMAKLKPAF--VKP------HG------SVTAANS----------SF- 304
+K N VS + KL+ A ++P G + A + F
Sbjct: 127 AKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 305 ---LTDG----ASACVIMTEAKAKQLGLKPKAY------LRDFVYVSQDPKDQLLLGPAY 351
L + M + Q+ + ++ ++ Q +LL Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 352 ATPQVLERAGLSLSDIDAWEVHEAFAG--QIL 381
L L L ++ + AF +IL
Sbjct: 244 --ENCL----LVLLNVQNAKAWNAFNLSCKIL 269
Score = 36.4 bits (83), Expect = 0.022
Identities = 46/305 (15%), Positives = 79/305 (25%), Gaps = 113/305 (37%)
Query: 5 LTKKIIKNAL----NV--PQTITNMSLKSIC----TSHNVYSPRKSVKDKTGKNI---VF 51
L K +N L NV + +L C T+ K V D +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRF-----KQVTDFLSAATTTHIS 290
Query: 52 VDGVRTPF-------LLSGTDYANMMAHELAR---------HSLIGILQKTGISKDLIDY 95
+D LL Y + +L R S+I + G+ D
Sbjct: 291 LDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDN 346
Query: 96 IVY------GTVIQ---EVKTSNIGREA--ALSAGFSD--KTPAHTVTMACISSNQGITT 142
+ T+I+ V R+ LS F P + + I +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILL---SLIWFDVIKS 402
Query: 143 GIGLIAAGAYDVVVAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFF 202
+ ++ + SL+ + K T
Sbjct: 403 DVMVVVN-----------KLHK----------YSLVEKQPKEST--------------IS 427
Query: 203 IPELPAVAEFSSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTDILPI 262
IP + ++ K ++EYAL + K + +D L
Sbjct: 428 IPSI---------------------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 263 QVGDK 267
D+
Sbjct: 467 PYLDQ 471
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 9e-09
Identities = 79/456 (17%), Positives = 133/456 (29%), Gaps = 166/456 (36%)
Query: 73 ELARHSLIGILQKT--GISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFS--------D 122
EL L +T + DLI + + E+ + + E + G +
Sbjct: 172 ELRD------LYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 123 KTPAHTVTMAC-ISSNQGITTGIGLIAAGAYDVV-VAGGVEFMSDIPIRHSRKMRSLLLR 180
TP ++ IS IG+I Y V G P ++
Sbjct: 224 NTPDKDYLLSIPISCP-----LIGVIQLAHYVVTAKLLGFT-----PGELRSYLKGATGH 273
Query: 181 ANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADR-LAAAFKVSRKEQDEY 239
+ L+ + A+AE S E+ S + + F +
Sbjct: 274 SQ---------GLVTAV----------AIAETDSWESFFVSVRKAITVLFFI-------- 306
Query: 240 ALRSHTLAQQAQEKGYLTDILPIQVGDKTISKDNGVRVSTPEQM---AKLKPAFVKPHGS 296
+R + T + P + D S +N V +P M + L V+ +
Sbjct: 307 GVRCYEAYPN-------TSLPPSILED---SLENNEGVPSP--MLSISNLTQEQVQDY-- 352
Query: 297 VTAANSSF---------LTDGASACVI-------------MTEAKAKQLGL--------- 325
V NS L +GA V+ + +AKA GL
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS-GLDQSRIPFSE 411
Query: 326 -KPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILA-- 382
K K R F+ V+ P LL P A+ + + D + + +F + +
Sbjct: 412 RKLKFSNR-FLPVAS-PFHSHLLVP--ASDLINK---------DLVKNNVSFNAKDIQIP 458
Query: 383 --------NLKAMDSE---------------W-----FAKNY---MGRSSKVGVPDLNKF 411
+L+ + W F + G G+ L
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH- 517
Query: 412 NNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQFG 447
N G TGVR+ + A + D +G
Sbjct: 518 RNKDG----------TGVRV-IVAGTLDINPDDDYG 542
Score = 49.3 bits (117), Expect = 2e-06
Identities = 57/319 (17%), Positives = 89/319 (27%), Gaps = 75/319 (23%)
Query: 170 HSRKMRSLLLRANKAKT----PADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRL 225
+S R L L + P +A+ + F LP E + + + L
Sbjct: 4 YS--TRPLTLSHGSLEHVLLVPTA-SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 226 AAAF------KVSRKEQDEYA--LRSHTLAQQAQEKGYL--TDI------LPIQVGDKTI 269
F V + ++ L L E YL DI L + D T+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLN---LCLTEFENCYLEGNDIHALAAKLLQEN-DTTL 116
Query: 270 SKDNGVRVSTPEQMAKLKPAFVKPHGS--VTAANSSFLTDGASACVIM-----TEAKAKQ 322
K + + K F K S A A I T+ ++
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE----GNAQLVAIFGGQGNTDDYFEE 172
Query: 323 L-GL--KPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQ 379
L L + D + S + +L+ A + GL +I W
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFTQGL---NILEW--------- 218
Query: 380 ILANLKAM-DSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANR 438
L N D ++ S + P L G + + H + T L
Sbjct: 219 -LENPSNTPDKDYLL------SIPISCP-LI------GVIQLAH-YVVTAKLLGFTPGEL 263
Query: 439 LVREDGQF----GLIAACA 453
G GL+ A A
Sbjct: 264 RSYLKGATGHSQGLVTAVA 282
Score = 47.4 bits (112), Expect = 9e-06
Identities = 42/260 (16%), Positives = 66/260 (25%), Gaps = 95/260 (36%)
Query: 218 MGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTDILPIQVGDKTISKDNGVRV 277
MG L K ++ + +A + D + D I +N
Sbjct: 1631 MGMD---LYKTSKAAQD-----------VWNRA--DNHFKDTYGFSILD--IVINN---- 1668
Query: 278 STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYV 337
P + F G N S + + + K K + + Y
Sbjct: 1669 --PVNLTIH---FGGEKGKRIRENYSAMI-----FETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 338 SQDPKDQLLLG----PA-----YATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAMD 388
+ K L PA A + L+ GL DA FAG
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI--PADA-----TFAG---------- 1761
Query: 389 SEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAA----TGVRLTVHAANRLVREDG 444
S+G +AA V +++ + +V G
Sbjct: 1762 -----------------------------HSLGE-YAALASLADV-MSIESLVEVVFYRG 1790
Query: 445 QFGLIAA--CAAGGQGVGMI 462
+A G GMI
Sbjct: 1791 MTMQVAVPRDELGRSNYGMI 1810
Score = 46.2 bits (109), Expect = 2e-05
Identities = 47/241 (19%), Positives = 63/241 (26%), Gaps = 97/241 (40%)
Query: 237 DEYALRSHTLAQQAQEKGYLTDILPIQVGDKTISKDNGVRVSTP-----EQMAKLKPAFV 291
D Y+ R TL+ G L +L V T Q L+ F
Sbjct: 2 DAYSTRPLTLSH-----GSLEHVLL---------------VPTASFFIASQ---LQEQFN 38
Query: 292 KPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQDPKDQLLLGPAY 351
K + F D E K LG YVS +
Sbjct: 39 K---ILPEPTEGFAADDEPTTPA--ELVGKFLG-----------YVS----SLVEPSKVG 78
Query: 352 ATPQVL-------ERAGLSLSDIDAWEVHEAFAGQILAN--LKAMDSEWFAKNYMGRSSK 402
QVL E L +DI H A A ++L + ++ KNY
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDI-----H-ALAAKLLQENDTTLVKTKELIKNY------ 126
Query: 403 VGVPDLNKFNNWGGSLSIGHPFAA---TGVRLTVHAANRLVR--EDGQFGLIAACAAGGQ 457
A + + L R +G L+A GGQ
Sbjct: 127 ---------------------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF--GGQ 163
Query: 458 G 458
G
Sbjct: 164 G 164
Score = 38.1 bits (88), Expect = 0.007
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 61/170 (35%)
Query: 22 NMSLKSICTSHNV------YSPRKSVKDKTGKNIVFVDG---VRTPF---LLSGTDYANM 69
N++L+ + +S RK + F + V +PF LL
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERK---------LKFSNRFLPVASPFHSHLLVP------ 434
Query: 70 MAHELARHSLIGILQKTGIS---KDLIDYI-VY----GTVIQEVKTSNIGR--------- 112
A + L K +S KD+ I VY G+ ++ + S R
Sbjct: 435 -----ASDLINKDLVKNNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 113 ---EAALSAGFS---DKTPAHTVTMACISSN--QGITTGIGLIAAGAYDV 154
E + D P + ++ G TG+ +I AG D+
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG--TGVRVIVAGTLDI 535
Score = 36.6 bits (84), Expect = 0.019
Identities = 60/346 (17%), Positives = 89/346 (25%), Gaps = 134/346 (38%)
Query: 81 GILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSA--------GFS------DKTPA 126
G Q+ G+ DL Y KTS ++ A GFS +
Sbjct: 1625 GS-QEQGMGMDL-----Y-------KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN 1671
Query: 127 HTVTMACISSNQGITTG-IGLIAAGAYD------VVVAGGVEFMSDIPIRHSRKMRSLLL 179
T+ + I +I D + E + R + + L
Sbjct: 1672 LTIHFGGEKG-KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL--LSA 1728
Query: 180 RANKAKT-PADRLKLLAT-------IRPDFFIPELPAVAEFSSGETMGHSADRLAAAFKV 231
T PA L ++ IP A GHS L
Sbjct: 1729 TQF---TQPA----LTLMEKAAFEDLKSKGLIPADATFA--------GHS---LG----- 1765
Query: 232 SRKEQDEY-ALRSHTLAQQAQEKGYLT--DILPI-----QVGDKTISKDNGVRVSTPEQM 283
EY A LA A ++ ++ + + +D R + M
Sbjct: 1766 ------EYAA-----LASLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGR--SNYGM 1809
Query: 284 AKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPKAYLRDFVYVSQD--P 341
+ P G V A SF + V E K+ G V +
Sbjct: 1810 IAINP------GRVAA---SFSQEALQYVV---ERVGKRTG--------WLVEIVNYNVE 1849
Query: 342 KDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLKAM 387
Q Y V AG L +D +L +K
Sbjct: 1850 NQQ------Y----VA--AG-DLRALDT-------VTNVLNFIKLQ 1875
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 52.6 bits (126), Expect = 2e-07
Identities = 32/285 (11%), Positives = 78/285 (27%), Gaps = 52/285 (18%)
Query: 116 LSAG-----FSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDIPIRH 170
+SA S P T AC +S + + G+ I +G + + GG + +
Sbjct: 1084 MSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFE 1143
Query: 171 SRKMRSLLLRANKAKTPADRLKLLATIRP-----DFFIPELPAVAEFSSG----ETMGHS 221
M++ + + + + RP + F+ A+ +G +
Sbjct: 1144 FGNMKATSNTLEEFEHGRTPAE--MS-RPATTTRNGFM-----EAQ-GAGIQIIMQADLA 1194
Query: 222 ADRLAA-------------AFKVSRKEQDEYALRSHTLAQQAQEKGYLTDILPIQVGDKT 268
S + L + + K ++ +
Sbjct: 1195 LKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSS-VKYASPNLNMKYRKRQL 1253
Query: 269 ISKDNGVRVSTPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGLKPK 328
++++ ++ ++ +K + I EA+++ +
Sbjct: 1254 VTREAQIKDWVENEL-----EALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQ-- 1306
Query: 329 AYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVH 373
+ + K L GL++ D+ H
Sbjct: 1307 -----QQWGNDFYKRD---PRIAPLRGALATYGLTIDDLGVASFH 1343
Score = 30.6 bits (69), Expect = 1.6
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 47/126 (37%)
Query: 87 GISKDLI----DYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITT 142
GIS D+I ++ V EA +++G +D + N +
Sbjct: 1000 GISDDIISQVDPITLFVLVS--------VVEAFIASGITDPYEMYKYVHVSEVGN-CSGS 1050
Query: 143 GIGLIAAGAYDVVVAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFF 202
G+G GV + + + P ++ D
Sbjct: 1051 GMG-------------GVSALRG------------MFKDRFKDEP---------VQNDIL 1076
Query: 203 IPELPA 208
Sbjct: 1077 QESFIN 1082
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 46.2 bits (110), Expect = 1e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 73 ELARHSLIGILQKTGISKDLIDYIVYGTVI-QEVKTSNIGREAALSAGFSDKTPAHTVTM 131
+L ++ L K + K+ ID + G ++ Q V + + R + P +
Sbjct: 57 KLMEDAVQSALSKQNLKKEDIDIFLAGDLLNQNVTANYVARHLKI--------PFLCLFG 108
Query: 132 ACISSNQGITTGIGLIAAGAYDVVVAGG 159
AC +S + I LI G +A
Sbjct: 109 ACSTSMESIAISSALIDGGFAKRALAAT 136
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 39.4 bits (93), Expect = 0.002
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
K T AC S + I I G D + GGVE
Sbjct: 177 KAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVE 215
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 39.0 bits (92), Expect = 0.002
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+ T AC S ++ I I G DV V GGVE
Sbjct: 161 RAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVE 199
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 37.6 bits (87), Expect = 0.010
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 125 PAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
P T AC +S + + G+ I +G + + GG +
Sbjct: 1297 PIKTPVGACATSVESVDIGVETILSGKARICIVGGYD 1333
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 37.2 bits (86), Expect = 0.013
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 125 PAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
P T AC ++ + + G I G V + GG +
Sbjct: 1272 PIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFD 1308
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 36.3 bits (85), Expect = 0.016
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
K + AC S +Q I IA G +++AGG E
Sbjct: 158 KGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAE 196
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 36.3 bits (85), Expect = 0.017
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 114 AALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
A L+ F ++++ AC +S I + I G D+V AGG E
Sbjct: 144 ACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGE 191
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 36.4 bits (85), Expect = 0.018
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+ P AC +S Q I + +I G DVV+AGG E
Sbjct: 183 RGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAE 221
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 36.0 bits (84), Expect = 0.021
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
K P + AC + + I L+ G ++ GG E
Sbjct: 157 KGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTE 195
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 36.0 bits (84), Expect = 0.026
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 114 AALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
A L+ F K ++++ AC +SN I +I G D + AGG E
Sbjct: 163 ATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCE 210
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 35.6 bits (83), Expect = 0.028
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+ P H AC + I +I G DV+VAGG E
Sbjct: 169 QGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTE 207
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 35.6 bits (83), Expect = 0.028
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+ P H+V AC + I LIA G DV+VAGG E
Sbjct: 168 RGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTE 206
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 35.9 bits (84), Expect = 0.028
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 125 PAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
P V+ C S + + I G+ DV+ AG +
Sbjct: 161 PVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAAD 197
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 35.6 bits (83), Expect = 0.031
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
K T AC ++ I +I G D ++ GG E
Sbjct: 154 KGINSTTVTACATATNSIGDAFKVIERGDADAMITGGAE 192
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 35.6 bits (83), Expect = 0.034
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
P+ TV AC + + + + +I G D+V+AGG E
Sbjct: 151 TGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTE 189
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 35.6 bits (83), Expect = 0.035
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
K P AC + I ++ G D ++ GG E
Sbjct: 178 KGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTE 216
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 35.2 bits (82), Expect = 0.041
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+ P+ ++ A S I +IA G DV+VAGG E
Sbjct: 168 RGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAE 206
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 35.2 bits (82), Expect = 0.042
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
K P H V+ AC + + IA G DV+VAGG +
Sbjct: 178 KGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTD 216
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 34.8 bits (81), Expect = 0.061
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
++ AC SSN I I G DV++ GG E
Sbjct: 173 NGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTE 211
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 34.0 bits (79), Expect = 0.086
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVE 161
+ P+ + + I G +VV+GGV+
Sbjct: 159 RGPSSALVAEQAGGLDALGHARRTIRRGT-PLVVSGGVD 196
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 31.9 bits (72), Expect = 0.41
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 71 AHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVT 130
L + + +++ G K I ++V+ T V + + A G + +
Sbjct: 115 VPALGTEAAVKAIEEWGRPKSEITHLVFCTSC-GVDMPSADFQCAKLLGLHANVNKYCIY 173
Query: 131 -MACISSNQGITTGIGLIAAGAYDVVVAGGVEFMS 164
+ + L V+ E
Sbjct: 174 MQGAYAGGTVMRYAKDLAENNRGARVLVVCAELTI 208
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 31.9 bits (73), Expect = 0.48
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 26/133 (19%)
Query: 46 GKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTV---- 101
K + V P + ++ + E+A + +++ G ++ I ++
Sbjct: 92 AKPGIVDPDVMRPIIPERSNDELSILAEMAVTAAEQAIERWGKPRERIGAVLCACSNMQR 151
Query: 102 --------IQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYD 153
+Q +G F D + +AC S+ G+ T + G+ D
Sbjct: 152 AYPAMAIEVQN----ALGLGG---FAF-D------MNVACSSATFGLKTAADFVGGGSVD 197
Query: 154 VVVAGGVEFMSDI 166
V+ E S
Sbjct: 198 AVLMVNPEICSGH 210
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 30.2 bits (68), Expect = 1.6
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 71 AHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFS-DKTPAHTV 129
LA+ + +++ G K I ++V+ ++ + A G
Sbjct: 102 IPRLAKEAAEKAIKEWGRPKSEITHLVFCSI-SGIDMPGADYRLATLLGLPLTVNRLMIY 160
Query: 130 TMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMS 164
+ AC + L V+ E
Sbjct: 161 SQACHMGAAMLRIAKDLAENNRGARVLVVACEITV 195
Score = 29.1 bits (65), Expect = 3.4
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 355 QVLERAGLSLSDIDAWEVH 373
+ L G+ + W H
Sbjct: 285 RALAPLGVREWNDVFWVAH 303
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 355 QVLERAGLSLSDIDAWEVHEAFAG-------QILANLKAMDSEWFAKNY 396
+ +R G SL+D + H F I+ N E Y
Sbjct: 215 EYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGY 263
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 29.7 bits (67), Expect = 2.3
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 1 MAQQLTKKIIKNALNVPQTITNMSLKSICTSHNVYSPRKSVKDKTGKNIVFVDG 54
M L + ++P + L +C SP S + G + F G
Sbjct: 209 MQTALAEVFPHPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQG 262
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 29.1 bits (66), Expect = 2.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 430 RLTVHAANRLVREDGQFGLIAACAAGGQGVGMIIERHPDATA 471
RL V +V ED + G+ AA +AG + + ++ D A
Sbjct: 152 RLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKA 193
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 29.5 bits (66), Expect = 2.6
Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 65 DYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKT 124
D + L + + + +++ G K I +++ T V + G
Sbjct: 96 DMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTS-GVDMPGADYQLTKLLGLRPYV 154
Query: 125 PA-HTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMS 164
+ + L V+ E +
Sbjct: 155 KRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSEVTA 195
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein,
storage protein, plant protein; 2.98A {Brassica napus}
Length = 466
Score = 29.5 bits (65), Expect = 3.0
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 193 LLATIRPDFFIPELPAVAEFSSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQE 252
LA P + + G + + LA AFK+ + + + +
Sbjct: 196 YLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRV 255
Query: 253 KGYLTDILPIQVGDKTISKDNGV-------RVSTPEQMAKLKPAFVKPHGSVTAANSSFL 305
+G + I P + + NG+ R + + G ++ NS L
Sbjct: 256 QGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDL 315
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 29.0 bits (65), Expect = 3.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 442 EDGQFGLIAACAAGGQGVGMIIERHPD 468
E G FG + GG+G+ ++ + +
Sbjct: 478 EKGIFGGVKRPKDGGKGLNGVVSKDEN 504
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 28.5 bits (64), Expect = 4.9
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 14 LNVPQTITNMSLKSICTSHNVYSPRKS---VKDKTGKNIVFVDG 54
V + C S ++P S I + DG
Sbjct: 38 FWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG 81
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 28.3 bits (63), Expect = 5.2
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
Query: 65 DYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFS-DK 123
D L + + + + + G+ K I ++++ T V + G S
Sbjct: 101 DLVVTGVPMLGKEAAVKAIDEWGLPKSKITHLIFCTT-AGVDMPGADYQLVKLLGLSPSV 159
Query: 124 TPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMS 164
+ + L V+ E +
Sbjct: 160 KRYMLYQQGAAAGGTVLRLAKDLAENNKGSRVLIVCSEITA 200
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI,
MCSG, STR genomics, midwest center for structural
genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Length = 130
Score = 27.4 bits (62), Expect = 5.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 178 LLRANKAKTPADRLKLLATIRPDFFIPE 205
R K + +L +F+PE
Sbjct: 57 AYRLMTEKKEFTKEIMLRAADEIYFVPE 84
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 28.0 bits (63), Expect = 6.2
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 430 RLTVHAANRLVREDGQFGLIAACAAGGQGVG 460
+ V + + ED Q G+ A +G +G
Sbjct: 157 AVGVAPSESIGLEDSQAGIQAIKDSGALPIG 187
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.1 bits (63), Expect = 6.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 355 QVLERAGLSLSDIDAWEVH 373
++L GL +SDID W +H
Sbjct: 295 EMLWDNGLQISDIDLWAIH 313
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 27.9 bits (62), Expect = 7.2
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 6/103 (5%)
Query: 65 DYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKT 124
D A ELA + + + G I ++V T + G
Sbjct: 90 DIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNS-GAHVPGVDFRLVPLLGLRPSV 148
Query: 125 PAHTVT-MACISSNQGITTGIGLIAA--GAYDVVVAGGVEFMS 164
+ C + + L GA +VVA E
Sbjct: 149 RRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVA--AELTL 189
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 28.1 bits (63), Expect = 7.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 355 QVLERAGLSLSDIDAWEVH 373
++ G SD+D + VH
Sbjct: 260 ELAGEHGWDASDLDFYIVH 278
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 28.0 bits (63), Expect = 8.2
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 33/87 (37%)
Query: 355 QVLERAGLSLSDIDAWEVH----------EAFAGQILANLKAMDSEWFAKNYMGRSSKVG 404
Q LE GL D+DA E H EA A +L GR
Sbjct: 294 QALESCGLEPGDVDAVEAHGTGTALGDPIEANA--LLDTY-------------GRDRDAD 338
Query: 405 VPDLNKFNNWGGSL--SIGHPFAATGV 429
P W GS+ +IGH AA GV
Sbjct: 339 RP------LWLGSVKSNIGHTQAAAGV 359
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 28.0 bits (63), Expect = 8.3
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 33/87 (37%)
Query: 355 QVLERAGLSLSDIDAWEVH----------EAFAGQILANLKAMDSEWFAKNYMGRSSKVG 404
+ LE AG+ D+D E H E A +L+ G
Sbjct: 316 RALENAGVRAGDVDYVEAHGTGTRLGDPIEVHA--LLSTY-------------GAERDPD 360
Query: 405 VPDLNKFNNWGGSL--SIGHPFAATGV 429
P W GS+ +IGH AA GV
Sbjct: 361 DP------LWIGSVKSNIGHTQAAAGV 381
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 27.5 bits (62), Expect = 9.1
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 28/109 (25%)
Query: 70 MAHELARHSLIGILQKTGISKDLIDYIVYGTV------------IQEVKTSNIGREAALS 117
+ + +L G D ID +++ + +Q A L
Sbjct: 69 LCRKAGEK----LLAGLGWQADSIDALIFVSQTPNYRLPATAFVLQ----------AEL- 113
Query: 118 AGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
A + + C Q + G+ LI GA V+ + +S +
Sbjct: 114 -DLPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKM 161
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 27.6 bits (61), Expect = 9.3
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 65 DYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKT 124
D A + +LA+ + I +++ G K I ++V+ T V + A G
Sbjct: 109 DIAVLEVPKLAKEAAISAIKQWGQPKSKITHLVFATTS-GVDMPGADFQLAKLLGLRPTV 167
Query: 125 PAHTVT-MACISSNQGITTGIGLIAAGAYDVVVAGGVEFMS 164
+ + + L V+ E +
Sbjct: 168 KRVMLYQQGAYAGATVLRVAKDLAENNKGARVLVACSEVTA 208
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 27.4 bits (62), Expect = 9.9
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 29/109 (26%)
Query: 70 MAHELARHSLIGILQKTGISKDLIDYIVYGTV------------IQEVKTSNIGREAALS 117
MA + A+ L++ +S + +D I+ T+ +Q + +
Sbjct: 53 MATQAAKE----ALREANLSPEELDLIILATLTPQKRFPSTACLVQA----QLKAKGV-- 102
Query: 118 AGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
A ++ AC + I +G V+ G E +S+
Sbjct: 103 -------YAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEA 144
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 27.3 bits (61), Expect = 9.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 430 RLTVHAANRLVREDGQFGLIAACAAGGQGVGMIIERHP 467
+L + +V ED G A AAG G+++ HP
Sbjct: 180 QLGILPERCVVIEDSVTGGAAGLAAGATLWGLLVPGHP 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,176,465
Number of extensions: 453502
Number of successful extensions: 1548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1449
Number of HSP's successfully gapped: 116
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)