RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1213
(472 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 188 bits (478), Expect = 3e-57
Identities = 85/284 (29%), Positives = 139/284 (48%), Gaps = 24/284 (8%)
Query: 47 KNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVK 106
+IV RT +AN AHEL + +L++ G++ ++ ++ G V+ +
Sbjct: 3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGE 62
Query: 107 TSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDI 166
N R+AA+ AG + A + S + + G+ IA G ++VAGG+E MS
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 167 PIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLA 226
P H +R K ++ D I + + G MG +A+ +A
Sbjct: 123 P--HCAHLR------GGVKMGDFKM-------IDTMIK--DGLTDAFYGYHMGTTAENVA 165
Query: 227 AAFKVSRKEQDEYALRSHTLAQQAQEKGYL-----TDILPIQVGDKTISKDNGVR-VSTP 280
+++SR EQD +A+ S A+ AQ+ G I+ + GD T+ D +R +T
Sbjct: 166 KQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATL 225
Query: 281 EQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLG 324
+ MAKL+PAF G+VTA N+S L DGA+A ++M+EA+A + G
Sbjct: 226 DSMAKLRPAF-DKEGTVTAGNASGLNDGAAAALLMSEAEASRRG 268
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 172 bits (437), Expect = 3e-51
Identities = 84/284 (29%), Positives = 133/284 (46%), Gaps = 19/284 (6%)
Query: 49 IVFVDGVRTPFLLSGTDYANMMAHELARHSLIGILQKTGISKDLIDYIVYGTVIQE-VKT 107
V+ VRTP G A++ +L H+L ++ ++G+ K+ ++ + G Q
Sbjct: 2 AWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDN 61
Query: 108 SNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDIP 167
N+ R A L AGF + TV C S + + I AG V + GVE MS P
Sbjct: 62 RNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAP 121
Query: 168 IRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAA 227
+ R P L + T F+ P + E+MG +A+ LA
Sbjct: 122 YAVPKPER---------GFPTGNLVMYDTTLGWRFVN--PKMQALYGTESMGETAENLAE 170
Query: 228 AFKVSRKEQDEYALRSHTLAQQAQEKGYLTDILPI-----QVGDKTISKDNGVR-VSTPE 281
+ + R+EQD +AL SH A +A E+G D + + + +D G R ++ E
Sbjct: 171 MYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLE 230
Query: 282 QMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQLGL 325
++A L+P F + G+VTA NSS L DGA+A +++++ AK GL
Sbjct: 231 KLAALRPVF-REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 128 bits (322), Expect = 1e-34
Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 32/293 (10%)
Query: 38 RKSVKDKTGKNIVFVDGVRTPFLLS-GTDYANMMAHELARHSLIGILQK----TGISKDL 92
+ S+ +K +++V V R+ + ++ L + L + + +L
Sbjct: 1 KNSLLEKRPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNL 60
Query: 93 IDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAY 152
I+ + G V+ + R A L++G TP + C S + I G
Sbjct: 61 IEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQI 120
Query: 153 DVVVAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEF 212
D+ +A GVE M++ N + IP
Sbjct: 121 DIGLALGVESMTNNYKNV-----------NPLGMISSEELQKNREAKKCLIP-------- 161
Query: 213 SSGETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYL-TDILPIQVGDKTI-S 270
MG + + +AA FK+SRK+QDE+A S+ A +A+ +G +ILPI++ D +I
Sbjct: 162 -----MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQ 216
Query: 271 KDNGVRV-STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQ 322
D G R T E ++ ++PAF+K G+ TA N+S ++DG + ++ + A Q
Sbjct: 217 SDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQ 269
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 124 bits (311), Expect = 3e-33
Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 39/287 (13%)
Query: 47 KNIVFVDGVRTPFLLS-GTDYANMMAHELARHSLIGILQK-TGISKDLIDYIVYGTVIQE 104
+++V VD RTP S G + N A +++ H + +L++ + + ++ +++G V Q
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQT 64
Query: 105 VKTS-NIGREAALSAGFSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFM 163
++ NI R A+L + A TV+ C SS + T I G DV V GGVE M
Sbjct: 65 LEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124
Query: 164 SDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSAD 223
+ + H + + + MG +A+
Sbjct: 125 GHVSMMHGVDPN---------------------PHMSLYAAK--------ASGMMGLTAE 155
Query: 224 RLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYL------TDILPIQVGDKTISKDNGVRV 277
L +SR++QD +A+RSH LA +A +G K D +R
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRP 215
Query: 278 -STPEQMAKLKPAFVKPHGSVTAANSSFLTDGASACVIMTEAKAKQL 323
+T E +A LKPAF G+VTA SS +TDGAS ++M+ +AK L
Sbjct: 216 DTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDL 262
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 118 bits (296), Expect = 2e-32
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 325 LKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANL 384
++P + + V DPK + GP A+ + LERAG + D+D E +EAFA Q A
Sbjct: 1 IQPLGRIVSWATVGVDPKV-MGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 59
Query: 385 KAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDG 444
K + D + N GG+++IGHP A+G R+ + R
Sbjct: 60 KDLGW-----------------DPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGA 102
Query: 445 QFGLIAACAAGGQGVGMIIER 465
+ GL C GG GV M IE
Sbjct: 103 RKGLATLCIGGGMGVAMCIES 123
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 112 bits (280), Expect = 3e-30
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 326 KPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILANLK 385
+P A +R P+ + +GP AT + LERAGLS SD+ E++EAFA Q LA L+
Sbjct: 1 RPLARVRAIAVAGVPPRI-MGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLR 59
Query: 386 AMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVREDGQ 445
+ + N GG++++GHP A+G R+ + + R Q
Sbjct: 60 EWSLSM---------------EDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKVQ 104
Query: 446 FGLIAACAAGGQGVGMIIER 465
FGL C GQG+ +++E
Sbjct: 105 FGLATMCIGVGQGIAVVVEG 124
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 105 bits (264), Expect = 5e-28
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 324 GLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILAN 383
GL+P A +R DP + GP AT + L+RAGL+++DID E++EAFA Q L
Sbjct: 1 GLEPLAVIRSMAVAGVDPAI-MGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPV 59
Query: 384 LKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVRED 443
LK + K N GG++++GHPF +G R++ N + +
Sbjct: 60 LKDLKVLDK--------------MNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNG 105
Query: 444 GQFGLIAACAAGGQGVGMIIER 465
G FGL C GQG+ + ER
Sbjct: 106 GTFGLSTMCIGLGQGIATVFER 127
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 105 bits (264), Expect = 5e-28
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 323 LGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAGQILA 382
L L DF V P+ + +GPAYA P+VLE GL + DID +E++EAFA Q L
Sbjct: 1 LNLPVLGRYIDFQTVGVPPEI-MGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALY 59
Query: 383 NLKAMDSEWFAKNYMGRSSKVGVPDLNKFNNWGGSLSIGHPFAATGVRLTVHAANRLVRE 442
+ + DLNK N GG++++GHP TG R L +
Sbjct: 60 CIHKLG-----------------IDLNKVNPRGGAIALGHPLGCTGARQVATILREL--K 100
Query: 443 DGQFGLIAACAAGGQGVGMIIER 465
Q G+++ C G G I +
Sbjct: 101 KDQIGVVSMCIGTGMGAAAIFIK 123
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 235
Score = 40.6 bits (94), Expect = 2e-04
Identities = 16/141 (11%), Positives = 38/141 (26%)
Query: 24 SLKSICTSHNVYSPRKSVKDKTGKNIVFVDGVRTPFLLSGTDYANMMAHELARHSLIGIL 83
+ +C + + ++ K V P L + D + L + + + +
Sbjct: 55 KFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAI 114
Query: 84 QKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPAHTVTMACISSNQGITTG 143
++ G K I +++ T + L C + +
Sbjct: 115 KEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLA 174
Query: 144 IGLIAAGAYDVVVAGGVEFMS 164
L V+ E +
Sbjct: 175 KDLAENNKGARVLVVCSEVTA 195
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate
dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 368
Score = 36.7 bits (84), Expect = 0.005
Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 21/178 (11%)
Query: 67 ANM-------MAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAG 119
A M MA +AR +G++ + ++ ++ + ++ K + L
Sbjct: 51 AAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVA 110
Query: 120 FSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDIPIRHSRKMRSLLL 179
+ + L AG DV+V + I+ ++MR +
Sbjct: 111 AAVSPFDIKRAIE-------------LDKAGV-DVIVVDTAHAHNLKAIKSMKEMRQKVD 156
Query: 180 RANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSGETMGHSADRLAAAFKVSRKEQD 237
A+ + D + + ++ G ++ A V+ + Q+
Sbjct: 157 ADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQE 214
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 31.9 bits (71), Expect = 0.11
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 123 KTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSD 165
+ P V+ C S + + I G+ DV+ AG +
Sbjct: 157 EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPIT 199
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 31.6 bits (70), Expect = 0.16
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 124 TPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSD 165
P+ + + I G +VV+GGV+ D
Sbjct: 151 GPSSALVAEQAGGLDALGHARRTIRRGT-PLVVSGGVDSALD 191
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 28.1 bits (63), Expect = 0.49
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 5 LTKKIIKNALNVPQTITNMSLKSICTSHNVYSPRKSVKDKTGK 47
+ + ++ N+P T N LK++ S + KSV K
Sbjct: 30 IWSRDVRYKSNLPLTEINKILKNLE-SKKLIKAVKSVAASKKK 71
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 30.2 bits (67), Expect = 0.49
Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 2/94 (2%)
Query: 71 AHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAGFSDKTPA-HTV 129
A LA L I +V T + G S
Sbjct: 92 AVPLAVDVSKRALAGLPYRAAEIGLLVLATS-TGFIAPGVDVAIVKELGLSPSISRVVVN 150
Query: 130 TMACISSNQGITTGIGLIAAGAYDVVVAGGVEFM 163
M C ++ + T + A + +E
Sbjct: 151 FMGCAAAMNALGTATNYVRAHPAMKALVVCIELC 184
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 30.5 bits (69), Expect = 0.53
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 442 EDGQFGLIAACAAGGQGVGMIIERHPD 468
E G FG + GG+G+ ++ + +
Sbjct: 478 EKGIFGGVKRPKDGGKGLNGVVSKDEN 504
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 28.4 bits (63), Expect = 2.3
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 319 KAKQLGLKPKAYLRDFVYVSQDPKDQLLLGPAYATPQVLERAGLSLSDIDAWEVHEAFAG 378
K + + L + + +L + P V++ AW E FA
Sbjct: 149 KLPRDVISTIIPLPVIKELYRTDGQHILK---FPQPHVVQV------SQSAWMTDEEFAR 199
Query: 379 QILA 382
+++A
Sbjct: 200 EMIA 203
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 27.8 bits (61), Expect = 2.3
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 8/140 (5%)
Query: 156 VAGGVEFMSDIPIRHSRKMRSLLLRANKAKTPADRLKLLATIRPDFFIPELPAVAEFSSG 215
+ E+++ + + KM L A ++ + L + P +A
Sbjct: 89 PSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGA 148
Query: 216 ETMGHSADRLAAAFKVSRKEQDEYALRSHTLAQQAQEKGYLTDIL---PIQVGDKTISKD 272
++ K + A A Y D + I K+
Sbjct: 149 HMANPLLRKVVDRESDIPKTTVQVAEE---AIVNAMRVLYYRDARSSRNFSLA--IIDKN 203
Query: 273 NGVRVSTPEQMAKLKPAFVK 292
G+ Q+ +K F K
Sbjct: 204 TGLTFKKNLQVENMKWDFAK 223
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 27.0 bits (60), Expect = 3.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 39 KSVKDKTGKNIVFVDGVRTPFLLSGT 64
SV G ++F DG R F LSGT
Sbjct: 61 GSVSKNQGLRLIFADGSRIIFRLSGT 86
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 378
Score = 27.4 bits (60), Expect = 4.7
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 19/118 (16%)
Query: 67 ANM-------MAHELARHSLIGILQKTGISKDLIDYIVYGTVIQEVKTSNIGREAALSAG 119
+ M MA +A IG + + + + ++ ++ + L G
Sbjct: 52 SPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCG 111
Query: 120 FSDKTPAHTVTMACISSNQGITTGIGLIAAGAYDVVVAGGVEFMSDIPIRHSRKMRSL 177
A I +++ + L+A DVVV + S I + M+
Sbjct: 112 ------------AAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEK 157
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive
phosphoprotein, pp63/parafusin {Paramecium tetraurelia
[TaxId: 5888]}
Length = 129
Score = 26.2 bits (58), Expect = 5.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 39 KSVKDKTGKNIVFVDGVRTPFLLSGT 64
+SV G VF DG R F LSGT
Sbjct: 51 QSVSKNQGVRFVFGDGSRIIFRLSGT 76
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate
synthase (KDO8P synthase) {Haemophilus influenzae
[TaxId: 727]}
Length = 281
Score = 26.6 bits (57), Expect = 6.2
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 440 VREDGQFGLIAACAAGGQGVGMIIERHPD 468
R + A G G+ +E HP+
Sbjct: 216 RRAQVTELARSGLAVGIAGL--FLEAHPN 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,660,637
Number of extensions: 76184
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 25
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)