BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12130
         (67 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
          Length = 845

 Score = 28.9 bits (63), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 24  TSCGGGGAAMASYLKSAPYG--VNGIGLSMDSL-----HSSLG 59
           TS GGG A+M SY   +PY   VN +G  +D       H S+G
Sbjct: 350 TSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIG 392


>pdb|1NSH|A Chain A, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
 pdb|1NSH|B Chain B, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
          Length = 101

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 4  KWTKMLGCNADGELAFPSFGTSCGGGGAA-MASYLKSAP 41
          +  K L  N+DG+L F  F    GG   A   S++K+AP
Sbjct: 58 RMMKKLDLNSDGQLDFQEFLNLIGGLAVACHESFVKAAP 96


>pdb|4B4F|A Chain A, Thermobifida Fusca Cel6b(e3) Co-crystallized With
           Cellobiose
 pdb|4B4F|B Chain B, Thermobifida Fusca Cel6b(e3) Co-crystallized With
           Cellobiose
 pdb|4B4H|A Chain A, Thermobifida Fusca Cellobiohydrolase Cel6b(e3) Catalytic
           Domain
 pdb|4B4H|B Chain B, Thermobifida Fusca Cellobiohydrolase Cel6b(e3) Catalytic
           Domain
          Length = 420

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 18  AFPSFGTSCGG-GGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYIPS 63
           + P+  T+ GG GG  + +Y+K     VNG+G ++      LG IP+
Sbjct: 137 SLPNLVTNVGGNGGTELCAYMKQNGGYVNGVGYAL----RKLGEIPN 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,258,303
Number of Sequences: 62578
Number of extensions: 74278
Number of successful extensions: 174
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)