BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12130
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P80205|OTX1_MOUSE Homeobox protein OTX1 OS=Mus musculus GN=Otx1 PE=2 SV=1
Length = 355
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGL---SMDSLHSSLGY 60
M SYLK PYG+NG+GL +MD LH S+GY
Sbjct: 1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31
>sp|P32242|OTX1_HUMAN Homeobox protein OTX1 OS=Homo sapiens GN=OTX1 PE=1 SV=1
Length = 354
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGL---SMDSLHSSLGY 60
M SYLK PYG+NG+GL +MD LH S+GY
Sbjct: 1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31
>sp|Q63410|OTX1_RAT Homeobox protein OTX1 OS=Rattus norvegicus GN=Otx1 PE=2 SV=1
Length = 355
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGL---SMDSLHSSLGY 60
M SYLK PYG+NG+GL +MD LH S+GY
Sbjct: 1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY 31
>sp|Q90267|OTX1A_DANRE Homeobox protein OTX1 A OS=Danio rerio GN=otx1a PE=2 SV=1
Length = 338
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGL---SMDSLHSSLGY 60
M SYLK APY +NG+GL +MD LH S+GY
Sbjct: 1 MMSYLKQAPYAMNGLGLGGATMDLLHPSVGY 31
>sp|Q91813|OTX2A_XENLA Homeobox protein OTX2-A OS=Xenopus laevis GN=otx2-a PE=1 SV=1
Length = 288
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY VNG+ L+ MD LH S+GY
Sbjct: 1 MMSYLKQPPYAVNGLSLTASGMDLLHQSVGY 31
>sp|Q91994|OTX1B_DANRE Homeobox protein OTX1 B OS=Danio rerio GN=otx1b PE=2 SV=1
Length = 323
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY +NG+GLS MD LH S+GY
Sbjct: 1 MMSYLKQPPYAMNGLGLSGAAMDLLHPSVGY 31
>sp|P32243|OTX2_HUMAN Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1
Length = 289
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY VNG+ L+ MD LH S+GY
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY 31
>sp|P80206|OTX2_MOUSE Homeobox protein OTX2 OS=Mus musculus GN=Otx2 PE=1 SV=1
Length = 289
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY VNG+ L+ MD LH S+GY
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY 31
>sp|Q28FN6|OTX2_XENTR Homeobox protein OTX2 OS=Xenopus tropicalis GN=otx2 PE=2 SV=1
Length = 289
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY VNG+ L+ MD LH S+GY
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY 31
>sp|Q6DKN2|OTX2B_XENLA Homeobox protein OTX2-B OS=Xenopus laevis GN=otx2-b PE=2 SV=1
Length = 289
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY VNG+ L+ MD LH S+GY
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY 31
>sp|Q91981|OTX2_DANRE Homeobox protein OTX2 OS=Danio rerio GN=otx2 PE=2 SV=1
Length = 289
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SYLK PY VNG+ L+ MD LH S+GY
Sbjct: 1 MMSYLKQPPYTVNGLSLTTSGMDLLHPSVGY 31
>sp|Q28EM7|OTX5_XENTR Homeobox protein otx5 OS=Xenopus tropicalis GN=otx5 PE=2 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SY+K Y VNG+ L+ MD LHS++GY
Sbjct: 1 MMSYIKQPHYAVNGLTLAGTGMDLLHSAVGY 31
>sp|Q9PT61|OTX5B_XENLA Homeobox protein otx5-B OS=Xenopus laevis GN=otx5-b PE=2 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SY+K Y VNG+ L+ MD LHS++GY
Sbjct: 1 MMSYIKQPHYAVNGLTLAGTGMDLLHSAVGY 31
>sp|Q9PVM0|OTX5A_XENLA Homeobox protein otx5-A OS=Xenopus laevis GN=otx5-a PE=2 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 33 MASYLKSAPYGVNGIGLS---MDSLHSSLGY 60
M SY+K Y VNG+ L+ MD LHS++GY
Sbjct: 1 MMSYIKQPHYAVNGLTLAGTGMDLLHSAVGY 31
>sp|Q5BHG4|LBUA_EMENI Lactobacillus up-regulated protein OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=lbuA PE=1 SV=2
Length = 175
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 1 MKVKWTKMLGCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGV-----NGIGLSMDSLH 55
M+ + +LG A LA P G + LKS P G +G+ + D
Sbjct: 1 MRSIFLAVLGLMATSSLAAPRVAAQEGISAFDAMAKLKSVPLGYVHIADDGVARAYDENE 60
Query: 56 SSLGYIPSAND 66
S + Y+P ND
Sbjct: 61 SVIDYVPLTND 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,526,275
Number of Sequences: 539616
Number of extensions: 916808
Number of successful extensions: 2532
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2518
Number of HSP's gapped (non-prelim): 18
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)