Query psy12130
Match_columns 67
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 19:29:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2251|consensus 97.1 0.00022 4.8E-09 53.3 1.6 30 36-66 1-35 (228)
2 PF13574 Reprolysin_2: Metallo 44.2 9.3 0.0002 25.6 0.5 33 6-38 120-152 (173)
3 PF13645 YkuD_2: L,D-transpept 38.8 19 0.00041 25.7 1.4 40 9-49 69-109 (176)
4 PF06482 Endostatin: Collagena 37.7 11 0.00024 29.4 0.1 42 10-53 197-238 (310)
5 PF08268 FBA_3: F-box associat 34.5 23 0.00049 22.0 1.1 16 5-20 103-118 (129)
6 TIGR00668 apaH bis(5'-nucleosy 33.7 16 0.00035 27.5 0.4 23 4-26 179-201 (279)
7 cd07422 MPP_ApaH Escherichia c 32.6 27 0.00058 25.4 1.3 22 4-25 177-198 (257)
8 PRK00166 apaH diadenosine tetr 31.6 24 0.00053 25.8 1.0 21 5-25 180-200 (275)
9 cd00247 Endostatin-like Endost 28.2 18 0.0004 26.4 -0.1 39 11-53 66-106 (171)
10 PF04360 Serglycin: Serglycin 22.7 41 0.00089 24.3 0.8 16 3-18 30-45 (150)
No 1
>KOG2251|consensus
Probab=97.11 E-value=0.00022 Score=53.32 Aligned_cols=30 Identities=43% Similarity=0.820 Sum_probs=27.3
Q ss_pred hhccCCCccccccc---hhhhcc--ccCCcCCCCCC
Q psy12130 36 YLKSAPYGVNGIGL---SMDSLH--SSLGYIPSAND 66 (67)
Q Consensus 36 YlkqppYsvNGLsL---~mDLLH--pavgY~Patpr 66 (67)
|+++|||++|++++ .||++| +.|+| +.+||
T Consensus 1 ~~~~~~~~~~~~~fa~p~~d~~h~~~~vP~-~~~pR 35 (228)
T KOG2251|consen 1 YLNQPPYAVNGLAFAAPYMDLLHPKPGVPY-SSGPR 35 (228)
T ss_pred CCCCCCCCcCccccccccccccccCCCCCc-Cccch
Confidence 67889999999999 999999 78999 88876
No 2
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=44.23 E-value=9.3 Score=25.60 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=15.9
Q ss_pred eeccccCCCCceeeccCCCCCCCCchhhhhhhc
Q psy12130 6 TKMLGCNADGELAFPSFGTSCGGGGAAMASYLK 38 (67)
Q Consensus 6 ~~~~~cn~d~e~~f~~f~~~~~~~~~~MMsYlk 38 (67)
.|.+|++-|+..--++.+..|..+....|+|-.
T Consensus 120 GH~lGa~Hd~~~~~~~~~~~~~~sg~~IMsy~~ 152 (173)
T PF13574_consen 120 GHQLGAPHDFDNGCNPGSPTCPGSGGYIMSYAG 152 (173)
T ss_dssp HHHHT---SSSS----SS--T-STTT-TT-SS-
T ss_pred HhhcCCCCCCCCCCCCCCCcCCCCCCEEEeeCC
Confidence 367888888885334555678888999999983
No 3
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=38.83 E-value=19 Score=25.74 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=33.2
Q ss_pred cccCCCCceeeccCCCCCCCCchhhhhhhccCCC-ccccccc
Q psy12130 9 LGCNADGELAFPSFGTSCGGGGAAMASYLKSAPY-GVNGIGL 49 (67)
Q Consensus 9 ~~cn~d~e~~f~~f~~~~~~~~~~MMsYlkqppY-svNGLsL 49 (67)
-|||.+.+.+ +.|+|.-++-..|.=.|+-.-.| +-+|++|
T Consensus 69 HG~gsg~~~a-~~FSN~~~S~~SSlG~y~tg~~Y~G~~G~sl 109 (176)
T PF13645_consen 69 HGRGSGNLYA-TSFSNRPGSHQSSLGFYKTGETYYGKHGYSL 109 (176)
T ss_pred cccCCCCCcc-ccCcCCCCCCCcCceeEEcCCEecCCCcceE
Confidence 3788887775 99999999888888888887655 8999999
No 4
>PF06482 Endostatin: Collagenase NC10 and Endostatin; InterPro: IPR010515 NC10 stands for Non-helical region 10 and is taken from P39059 from SWISSPROT. A mutation in this region in P39060 from SWISSPROT is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor []. Endostatin also binds a zinc ion near the N terminus; this is likely to be of structural rather than functional importance according to [].; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0031012 extracellular matrix; PDB: 3N3F_B 1DY1_A 1DY0_A 1KOE_A 1BNL_D 3HSH_E 3HON_A 1DY2_A.
Probab=37.69 E-value=11 Score=29.36 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=23.7
Q ss_pred ccCCCCceeeccCCCCCCCCchhhhhhhccCCCccccccchhhh
Q psy12130 10 GCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDS 53 (67)
Q Consensus 10 ~cn~d~e~~f~~f~~~~~~~~~~MMsYlkqppYsvNGLsL~mDL 53 (67)
=.|-.||.+|+.+.+.+.+..+-+. -+.+=|+.+|-....|.
T Consensus 197 ivNlkgevLf~sw~slf~g~~~~~~--~~~~iySFdgrdV~~d~ 238 (310)
T PF06482_consen 197 IVNLKGEVLFDSWESLFSGSGGQFK--PNAPIYSFDGRDVLTDP 238 (310)
T ss_dssp EE-TTS-EEES-HHHHTSSS-SB----TTS--BBTTS-BTTTST
T ss_pred eEeccCCcchhhHHHHhCCcccccC--CCCceEeECCeeccCCC
Confidence 4689999999999998876544221 12256999998774443
No 5
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=34.48 E-value=23 Score=21.97 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.5
Q ss_pred ceeccccCCCCceeec
Q psy12130 5 WTKMLGCNADGELAFP 20 (67)
Q Consensus 5 w~~~~~cn~d~e~~f~ 20 (67)
...+.|+..+||++|-
T Consensus 103 ~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 103 DFSFVGVTDTGEIVFA 118 (129)
T ss_pred EEEEEEEcCCCEEEEE
Confidence 4567899999999986
No 6
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=33.73 E-value=16 Score=27.46 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.4
Q ss_pred cceeccccCCCCceeeccCCCCC
Q psy12130 4 KWTKMLGCNADGELAFPSFGTSC 26 (67)
Q Consensus 4 ~w~~~~~cn~d~e~~f~~f~~~~ 26 (67)
+.|.||=|++||+|-|..=+.+-
T Consensus 179 ~~TRmR~c~~~g~ld~~~k~~~~ 201 (279)
T TIGR00668 179 AFTRMRFCFPNGQLDMYSKESPE 201 (279)
T ss_pred HHhhheeeCCCCCCcccccCCcc
Confidence 45889999999999887666553
No 7
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=32.56 E-value=27 Score=25.44 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=17.9
Q ss_pred cceeccccCCCCceeeccCCCC
Q psy12130 4 KWTKMLGCNADGELAFPSFGTS 25 (67)
Q Consensus 4 ~w~~~~~cn~d~e~~f~~f~~~ 25 (67)
+-|.||=|++||+|-|..-++.
T Consensus 177 ~~trmR~~~~~g~l~~~~k~~~ 198 (257)
T cd07422 177 AFTRMRFCTPDGRLDFSSKGAP 198 (257)
T ss_pred HhhceeeecCCCCEeecccCCc
Confidence 3588999999999988766655
No 8
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=31.58 E-value=24 Score=25.81 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=17.0
Q ss_pred ceeccccCCCCceeeccCCCC
Q psy12130 5 WTKMLGCNADGELAFPSFGTS 25 (67)
Q Consensus 5 w~~~~~cn~d~e~~f~~f~~~ 25 (67)
-|.||=|++||+|-|..-++.
T Consensus 180 ~trmR~~~~~g~l~~~~k~~~ 200 (275)
T PRK00166 180 FTRMRFCTPDGRLDFKCKGPP 200 (275)
T ss_pred HhhhhcccCCCceeecccCCc
Confidence 478999999999988765544
No 9
>cd00247 Endostatin-like Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; endostatin XVIII is monomeric and contains a heparin-binding epitope and zinc binding sites while endostatin XV is trimeric and contains neither of these sites; the generation of endostatin or endostatin-like collagen XV/XVIII fragments is catalyzed by proteolytic enzymes within the protease-sensitive hinge region of the C-terminal domain; endostatin inhibits endothelial cell migration in vitro and appears to be highly effective in murine in vivo studies
Probab=28.21 E-value=18 Score=26.42 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=28.7
Q ss_pred cCCCCceeeccCCCCCCCCchhhhhhhcc--CCCccccccchhhh
Q psy12130 11 CNADGELAFPSFGTSCGGGGAAMASYLKS--APYGVNGIGLSMDS 53 (67)
Q Consensus 11 cn~d~e~~f~~f~~~~~~~~~~MMsYlkq--ppYsvNGLsL~mDL 53 (67)
-|.-||.+|+.+.+...+..+ ++++ |=|+++|-..--|.
T Consensus 66 vN~rGevlf~sw~slf~g~~g----~~~~~~~IySFdgrdVl~D~ 106 (171)
T cd00247 66 VNLKGEVLFNSWESLFSGSGG----QFNPGARIYSFDGRDVLTDP 106 (171)
T ss_pred EeccCcEeehhHHHHhCCCCC----ccCCCCceeeECCcccccCC
Confidence 378899999999988776543 5554 67999998663343
No 10
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=22.73 E-value=41 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=9.7
Q ss_pred ccceeccccCCCCcee
Q psy12130 3 VKWTKMLGCNADGELA 18 (67)
Q Consensus 3 ~~w~~~~~cn~d~e~~ 18 (67)
|+=-+-.+||||+..|
T Consensus 30 rArYqWVrC~PDsnsA 45 (150)
T PF04360_consen 30 RARYQWVRCNPDSNSA 45 (150)
T ss_pred hcceeEEecCCCCCCC
Confidence 3333446799998643
Done!