Query psy12130
Match_columns 67
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 19:30:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dy2_A Collagen alpha1(XV) cha 46.4 10 0.00035 26.8 2.0 38 10-49 67-104 (180)
2 3iz6_X 40S ribosomal protein S 21.1 20 0.00069 22.6 0.0 10 49-58 5-14 (86)
3 3qec_A Putative carbohydrate b 19.9 47 0.0016 22.1 1.6 17 6-22 88-104 (150)
4 1l3e_B P300 protein; protein-p 15.3 18 0.00062 22.8 -1.2 13 1-13 50-62 (101)
5 2ph0_A Uncharacterized protein 14.4 59 0.002 21.6 1.0 19 11-29 126-144 (174)
6 1koe_A Endostatin; angiogenesi 12.8 54 0.0018 22.7 0.5 37 11-49 66-102 (172)
7 2ovi_A Hypothetical protein CH 12.5 61 0.0021 21.2 0.7 16 11-26 125-140 (164)
8 1ufg_A Lamin A, nuclear lamin; 10.9 86 0.0029 20.7 1.0 11 8-18 42-52 (151)
9 3hn9_A Lamin-B1; structural ge 10.8 88 0.003 19.6 1.0 11 8-18 17-27 (123)
10 3tvj_I Protease inhibitor SGPI 10.6 88 0.003 17.1 0.8 10 9-18 20-29 (38)
No 1
>1dy2_A Collagen alpha1(XV) chain; angiogenesis inhibitor; 2.0A {Mus musculus} SCOP: d.169.1.5
Probab=46.40 E-value=10 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=28.1
Q ss_pred ccCCCCceeeccCCCCCCCCchhhhhhhccCCCccccccc
Q psy12130 10 GCNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGL 49 (67)
Q Consensus 10 ~cn~d~e~~f~~f~~~~~~~~~~MMsYlkqppYsvNGLsL 49 (67)
=+|.-||.+|+...+.+.+++. .+. -+.+=|++||-..
T Consensus 67 ivNlkGevLf~sW~slf~g~~~-~l~-~~~~IySFdgrdV 104 (180)
T 1dy2_A 67 IVNLKGQVLFNNWDSIFSGDGG-QFN-THIPIYSFDGRDV 104 (180)
T ss_dssp EECTTSCEEESCSGGGGSSSCC-BCC-TTSCCBBTTSCBT
T ss_pred eEeccCcEEecCHHHHhCCccc-ccC-CCCceEeeCCccc
Confidence 3789999999999999866553 211 1347899999865
No 2
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.11 E-value=20 Score=22.64 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred chhhhccccC
Q psy12130 49 LSMDSLHSSL 58 (67)
Q Consensus 49 L~mDLLHpav 58 (67)
+.+|||||+.
T Consensus 5 ~~~DLl~P~~ 14 (86)
T 3iz6_X 5 NDIDLLNPPA 14 (86)
T ss_dssp ----------
T ss_pred cchhccCCCH
Confidence 3678999863
No 3
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=19.85 E-value=47 Score=22.09 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=13.4
Q ss_pred eeccccCCCCceeeccC
Q psy12130 6 TKMLGCNADGELAFPSF 22 (67)
Q Consensus 6 ~~~~~cn~d~e~~f~~f 22 (67)
.+-.-||.+|.|.|+..
T Consensus 88 ~r~t~cD~~G~F~F~~L 104 (150)
T 3qec_A 88 VREATTDQNGRFDFDHI 104 (150)
T ss_dssp CEEEECCTTSEEEEEEE
T ss_pred eeEEEeCCCCcEEECCC
Confidence 34568999999999854
No 4
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A
Probab=15.29 E-value=18 Score=22.78 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.5
Q ss_pred CcccceeccccCC
Q psy12130 1 MKVKWTKMLGCNA 13 (67)
Q Consensus 1 ~~~~w~~~~~cn~ 13 (67)
||.-|.||..|..
T Consensus 50 mK~ll~Hm~~C~~ 62 (101)
T 1l3e_B 50 MKNVLNHMTHCQS 62 (101)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHHHccC
Confidence 6888999999985
No 5
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=14.37 E-value=59 Score=21.59 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.0
Q ss_pred cCCCCceeeccCCCCCCCC
Q psy12130 11 CNADGELAFPSFGTSCGGG 29 (67)
Q Consensus 11 cn~d~e~~f~~f~~~~~~~ 29 (67)
=|.+|+.+|++|+.--.+.
T Consensus 126 FD~~G~ai~Kif~~r~~~~ 144 (174)
T 2ph0_A 126 FNANGAAMFKIFLGRDSHR 144 (174)
T ss_dssp ECTTSCEEEEEECCBCTTS
T ss_pred ECCCCCEEEEEEeccCCCc
Confidence 3899999999998766433
No 6
>1koe_A Endostatin; angiogenesis inhibitor, collagen XVIII, non-collageneous domain, heparin-binding domain; 1.50A {Mus musculus} SCOP: d.169.1.5 PDB: 1dy0_A 1dy1_A 1bnl_A
Probab=12.76 E-value=54 Score=22.73 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=25.6
Q ss_pred cCCCCceeeccCCCCCCCCchhhhhhhccCCCccccccc
Q psy12130 11 CNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGL 49 (67)
Q Consensus 11 cn~d~e~~f~~f~~~~~~~~~~MMsYlkqppYsvNGLsL 49 (67)
.|.-||.+|+...+...+.... +. -+.+=|++||-..
T Consensus 66 vNlkGevLf~sw~~lf~~~~~~-l~-~~~~I~sfng~dv 102 (172)
T 1koe_A 66 VNLKDEVLSPSWDSLFSGSQGQ-LQ-PGARIFSFDGRDV 102 (172)
T ss_dssp ECTTCCEEESCHHHHTSSSCSB-CC-TTCCCBBTTSCBT
T ss_pred EeccCcEEecCHHHHhCCCccc-cC-CCCceEeeCCccc
Confidence 7899999999988887654331 21 2236788888743
No 7
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=12.48 E-value=61 Score=21.21 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=13.3
Q ss_pred cCCCCceeeccCCCCC
Q psy12130 11 CNADGELAFPSFGTSC 26 (67)
Q Consensus 11 cn~d~e~~f~~f~~~~ 26 (67)
=|.|||.+|++|+.--
T Consensus 125 Fd~~G~~i~kif~~r~ 140 (164)
T 2ovi_A 125 FNKEGSAMLKIFLGRD 140 (164)
T ss_dssp ECTTSSEEEEEEECCC
T ss_pred ECCCCCEEEEEEeccC
Confidence 3889999999998764
No 8
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=10.87 E-value=86 Score=20.70 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=7.7
Q ss_pred ccccCCCCcee
Q psy12130 8 MLGCNADGELA 18 (67)
Q Consensus 8 ~~~cn~d~e~~ 18 (67)
+.-|++|||++
T Consensus 42 I~E~d~~GefV 52 (151)
T 1ufg_A 42 VEEVDEEGKFV 52 (151)
T ss_dssp EEEECTTSSEE
T ss_pred EEEECCCCCEE
Confidence 45678888874
No 9
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=10.84 E-value=88 Score=19.62 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.2
Q ss_pred ccccCCCCcee
Q psy12130 8 MLGCNADGELA 18 (67)
Q Consensus 8 ~~~cn~d~e~~ 18 (67)
+.-|++|||++
T Consensus 17 I~evd~~G~fV 27 (123)
T 3hn9_A 17 IEEIDVDGKFI 27 (123)
T ss_dssp EEEECTTSSEE
T ss_pred EEEEcCCCCEE
Confidence 45577777763
No 10
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=10.55 E-value=88 Score=17.09 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=7.4
Q ss_pred cccCCCCcee
Q psy12130 9 LGCNADGELA 18 (67)
Q Consensus 9 ~~cn~d~e~~ 18 (67)
-+|++||.-+
T Consensus 20 C~C~~dG~~a 29 (38)
T 3tvj_I 20 CRCGSDGKSA 29 (38)
T ss_dssp EEECTTSSCE
T ss_pred eECCCCCcee
Confidence 4689999753
Done!