Query psy12130
Match_columns 67
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 19:30:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dy2a_ d.169.1.5 (A:) Endosta 36.7 11 0.00083 24.7 2.7 44 11-56 62-105 (168)
2 d1viza_ c.1.4.1 (A:) PcrB prot 33.9 6.3 0.00046 24.8 1.0 16 2-17 5-20 (229)
3 d2f6ua1 c.1.4.1 (A:1001-1231) 26.4 9.8 0.00072 23.5 0.9 15 3-17 4-18 (231)
4 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 22.4 13 0.00097 20.5 0.8 11 36-46 66-76 (76)
5 d1lkia_ a.26.1.1 (A:) Leukemia 13.6 26 0.0019 23.1 0.7 17 10-27 51-67 (172)
6 d1l8ca_ g.53.1.1 (A:) CREB-bin 12.6 9 0.00065 22.0 -1.7 13 1-13 43-55 (95)
7 d2dtge2 b.1.2.1 (E:593-807) In 11.2 32 0.0023 17.6 0.5 10 7-16 171-180 (196)
8 d1jova_ b.30.5.7 (A:) Hypothet 11.0 44 0.0032 20.6 1.2 15 8-25 69-83 (269)
9 d2hqva1 e.62.1.2 (A:11-186) Hy 10.5 34 0.0025 21.3 0.5 15 11-25 140-154 (176)
10 d2enga_ b.52.1.1 (A:) Endogluc 9.8 53 0.0039 21.9 1.4 39 7-46 27-66 (210)
No 1
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.73 E-value=11 Score=24.70 Aligned_cols=44 Identities=18% Similarity=0.396 Sum_probs=30.8
Q ss_pred cCCCCceeeccCCCCCCCCchhhhhhhccCCCccccccchhhhccc
Q psy12130 11 CNADGELAFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHS 56 (67)
Q Consensus 11 cn~d~e~~f~~f~~~~~~~~~~MMsYlkqppYsvNGLsL~mDLLHp 56 (67)
-|--||..|+.+.+.+.+..+-+.. ..|=|+.+|-..--|..-|
T Consensus 62 VNlrgevLF~sW~siF~g~g~~~~~--~~~IySFdGrdVl~D~~WP 105 (168)
T d1dy2a_ 62 VNLKGQVLFNNWDSIFSGDGGQFNT--HIPIYSFDGRDVMTDPSWP 105 (168)
T ss_dssp ECTTSCEEESCSGGGGSSSCCBCCT--TSCCBBTTSCBTTTCTTCS
T ss_pred EeccCccchhhHHHHhCCCCCccCC--CCceeeECCcccccCCCCc
Confidence 4778999999999988776542221 2378999998774454433
No 2
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}
Probab=33.90 E-value=6.3 Score=24.76 Aligned_cols=16 Identities=13% Similarity=0.536 Sum_probs=13.8
Q ss_pred cccceeccccCCCCce
Q psy12130 2 KVKWTKMLGCNADGEL 17 (67)
Q Consensus 2 ~~~w~~~~~cn~d~e~ 17 (67)
++.|.|+..|+||=|.
T Consensus 5 ~~~~~h~~~iDPd~~~ 20 (229)
T d1viza_ 5 VTEWKHVFKLDPNKDL 20 (229)
T ss_dssp GGGCCEEEEECTTSCC
T ss_pred ecccceeeEeCCCCCC
Confidence 5789999999999765
No 3
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.38 E-value=9.8 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=13.0
Q ss_pred ccceeccccCCCCce
Q psy12130 3 VKWTKMLGCNADGEL 17 (67)
Q Consensus 3 ~~w~~~~~cn~d~e~ 17 (67)
++|.|+-.|+||=|.
T Consensus 4 ~~~~hit~~DPd~~~ 18 (231)
T d2f6ua1 4 RKWRHITKLDPDRTN 18 (231)
T ss_dssp GGCCEEEEECTTSCC
T ss_pred ceeeeeeeECCCCcc
Confidence 679999999999765
No 4
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=22.41 E-value=13 Score=20.54 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=8.6
Q ss_pred hhccCCCcccc
Q psy12130 36 YLKSAPYGVNG 46 (67)
Q Consensus 36 YlkqppYsvNG 46 (67)
-+|+|.|++|.
T Consensus 66 L~k~p~y~~~~ 76 (76)
T d1gyxa_ 66 LIKKPGYSMNA 76 (76)
T ss_dssp CSBCCSSCCCC
T ss_pred hccCCCCCCCC
Confidence 46899999884
No 5
>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.60 E-value=26 Score=23.07 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.3
Q ss_pred ccCCCCceeeccCCCCCC
Q psy12130 10 GCNADGELAFPSFGTSCG 27 (67)
Q Consensus 10 ~cn~d~e~~f~~f~~~~~ 27 (67)
=|+|.+.. ||+|-.-..
T Consensus 51 LC~Pn~td-FPpFh~n~t 67 (172)
T d1lkia_ 51 LCAPNMTD-FPSFHGNGT 67 (172)
T ss_dssp HTCCCCTT-SCCCCTTSC
T ss_pred hcCCCCCC-CCCcCCCCc
Confidence 39999988 999976543
No 6
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.56 E-value=9 Score=22.00 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=10.9
Q ss_pred CcccceeccccCC
Q psy12130 1 MKVKWTKMLGCNA 13 (67)
Q Consensus 1 ~~~~w~~~~~cn~ 13 (67)
||.-|.||..|..
T Consensus 43 mK~ll~H~~~Ck~ 55 (95)
T d1l8ca_ 43 MKNVLNHMTHCQA 55 (95)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHccC
Confidence 6788999999964
No 7
>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.21 E-value=32 Score=17.61 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=7.9
Q ss_pred eccccCCCCc
Q psy12130 7 KMLGCNADGE 16 (67)
Q Consensus 7 ~~~~cn~d~e 16 (67)
+|..||.+|+
T Consensus 171 ~V~A~n~~~~ 180 (196)
T d2dtge2 171 ELQACNQDTP 180 (196)
T ss_dssp CCEEESCSSS
T ss_pred EEEEEECCCC
Confidence 5778998876
No 8
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]}
Probab=10.95 E-value=44 Score=20.64 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=11.1
Q ss_pred ccccCCCCceeeccCCCC
Q psy12130 8 MLGCNADGELAFPSFGTS 25 (67)
Q Consensus 8 ~~~cn~d~e~~f~~f~~~ 25 (67)
+|||.| +.||.|+..
T Consensus 69 IRGGiP---i~fP~fG~~ 83 (269)
T d1jova_ 69 IRGGVP---ICYPWFGGV 83 (269)
T ss_dssp CSBSCC---EEBSSCGGG
T ss_pred ccCCcc---eeCcccCCC
Confidence 567776 689999853
No 9
>d2hqva1 e.62.1.2 (A:11-186) Hypothetical protein AGR_C_4470p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.54 E-value=34 Score=21.25 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.5
Q ss_pred cCCCCceeeccCCCC
Q psy12130 11 CNADGELAFPSFGTS 25 (67)
Q Consensus 11 cn~d~e~~f~~f~~~ 25 (67)
=|.+||.+|++|.+-
T Consensus 140 FD~~G~av~Kiyl~r 154 (176)
T d2hqva1 140 MNAAGGAMFKIFVRR 154 (176)
T ss_dssp EETTSSEEEEEECCB
T ss_pred ECCCCCEEEEEEeec
Confidence 378999999999754
No 10
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}
Probab=9.84 E-value=53 Score=21.90 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=24.4
Q ss_pred eccccCCCCce-eeccCCCCCCCCchhhhhhhccCCCcccc
Q psy12130 7 KMLGCNADGEL-AFPSFGTSCGGGGAAMASYLKSAPYGVNG 46 (67)
Q Consensus 7 ~~~~cn~d~e~-~f~~f~~~~~~~~~~MMsYlkqppYsvNG 46 (67)
-|.-|+.||.- ....-.+-|-.|+.+-|-+ .|.|++||.
T Consensus 27 Pv~sC~~dg~~~~d~~~~SgCd~GG~ay~C~-~q~PwAVnd 66 (210)
T d2enga_ 27 PVFSCNANFQRITDFDAKSGCEPGGVAYSCA-DQTPWAVND 66 (210)
T ss_dssp CCCCBCTTSCBCSCTTCCBTTSTTCCBBCCT-TSSCEEEET
T ss_pred ccccccCCCCccccCCcccccCCCCcceecc-CCCCeeecC
Confidence 36789999653 4455667785333333333 567899885
Done!