RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12130
         (67 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.12
 Identities = 6/15 (40%), Positives = 7/15 (46%)

Query: 35  SYLKSAPYGVNGIGL 49
            YL S P     IG+
Sbjct: 229 DYLLSIPISCPLIGV 243


>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen
          peroxide, antioxidant, oxidoreductase, redox-active
          center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A
          2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
          Length = 249

 Score = 24.6 bits (54), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 43 GVNGIGLSMDSLHSSLGYIPSANDI 67
          GV+ IGLS+DS+ S + +      I
Sbjct: 67 GVDLIGLSVDSVFSHIKWK---EWI 88


>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
           transfera; HET: KCX; 1.90A {Propionibacterium
           freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
           PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
          Length = 539

 Score = 24.5 bits (54), Expect = 3.0
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 29  GGAAMASYLKSAPYGVNGIGLSMDSLHSSLGY 60
            G    S +K+   GV+ +  ++ S+  SLG 
Sbjct: 231 TGVTEVSLMKAIEAGVDVVDTAISSM--SLGP 260


>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
          structural genomics consortium, SGC; 2.30A {Plasmodium
          yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
          Length = 220

 Score = 24.1 bits (53), Expect = 3.6
 Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 3/25 (12%)

Query: 43 GVNGIGLSMDSLHSSLGYIPSANDI 67
              IG S +S  S   +I    DI
Sbjct: 65 NCKLIGFSCNSKESHDKWI---EDI 86


>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
           structure, B enzymes, Zn2+ binding site, TIM-barrel
           fold, lyase; 1.70A {Vibrio cholerae}
          Length = 464

 Score = 24.1 bits (53), Expect = 4.0
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 29  GGAAMASYLKSAPYGVNGIGLSMDSLHSSLGY 60
            G A  + LK+   GV+ +  ++ S+  S  Y
Sbjct: 212 AGLADMTLLKAIEAGVDRVDTAISSM--SGTY 241


>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
           biotin, disease mutation, gluconeogenesis, ligase, lipid
           synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
           PDB: 3bg9_A
          Length = 718

 Score = 23.8 bits (52), Expect = 5.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 30  GAAMASYLKSAPYGVNGIGLSMDSL 54
           GA +A+ L  A  G + + ++ DS+
Sbjct: 317 GAGVAAMLACAQAGADVVDVAADSM 341


>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
          complex, THIF, TRAN biosynthetic protein complex; 1.98A
          {Escherichia coli} PDB: 1zfn_A* 1zkm_A
          Length = 251

 Score = 23.2 bits (51), Expect = 8.5
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 26 CGGGGAAMASYLKSAPYGVNGIGL 49
           GG G   A YL  A  GV  + L
Sbjct: 36 LGGLGTPAALYLAGA--GVGTLVL 57


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,027,200
Number of extensions: 45888
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 7
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)