BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12131
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
E++ + SL + V L +G Y C A++ IG K+ +++ Y P+ + ++
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNY 120
I C+V +NPPA + W RD + ++ S K L + D DFG Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 121 MCQASNNLGSS-QQFI-QLSGIPNIP 144
C A+N++G+ Q++I L+ +P+ P
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSP 199
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 69 IICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
++C+ P ++ W R DG T G GRI++ SL ++ +K +D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 122 CQASNNLGSSQQFIQL 137
C+A++ +G Q+ + L
Sbjct: 80 CEAASRIGGHQKSMYL 95
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 163 QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVL 222
Q D + I++Y++K+R +++ W + + + LQ YE +
Sbjct: 316 QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN--------KDHIILEHLQWTMGYEVQIT 367
Query: 223 AKNRFGWSRPSKAYVFA 239
A NR G+S P+ Y F+
Sbjct: 368 AANRLGYSEPT-VYEFS 383
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
E++ + SL + V L +G Y C A++ IG K+ +++ Y P+ + ++
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNY 120
I C+V +NPPA + W RD + ++ S K L + D DFG Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 121 MCQASNNLGSSQQ--FIQLSGIPNIP 144
C A+N++G+ Q + L+ +P+ P
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSP 199
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 69 IICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
++C+ P ++ W R DG T G GRI++ SL ++ +K +D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 122 CQASNNLGSSQQFIQL 137
C+A++ +G Q+ + L
Sbjct: 80 CEAASRIGGHQKSMYL 95
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTA 62
++L + +L L VT G Y+C N + S I+NV+Y P + ++ + +
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
P + + C+ +NPPA+ W DG ++ L + +I + + G Y C
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDG-----------NIQQHTQELFISNITEKNSGLYTC 443
Query: 123 QASN 126
QA+N
Sbjct: 444 QANN 447
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTA 62
++L +L L VT Y+C N + S + I+NV+Y P+ ++
Sbjct: 157 LQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYR 216
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ C+ +NPPA+ WF +GT L + +I + G+Y C
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNGT-----------FQQSTQELFIPNITVNNSGSYTC 265
Query: 123 QASN 126
QA N
Sbjct: 266 QAHN 269
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
++L +L L VT A Y C N++ + S ++V+Y P+ I + P
Sbjct: 513 LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP-----IISPP 567
Query: 64 D------MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 117
D + C+ +NP + W RI+ L + I +
Sbjct: 568 DSSYLSGANLNLSCHSASNPSPQYSW-----------RINGIPQQHTQVLFIAKITPNNN 616
Query: 118 GNYMCQASN 126
G Y C SN
Sbjct: 617 GTYACFVSN 625
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 8/160 (5%)
Query: 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
++N +L + + G Y C ASN +G S++K + PP ++ + A
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
C+V P K+ W +D I GG M + +L V + D G Y C
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ 163
ASN G QL G+ P F K +L P R+V Q
Sbjct: 272 ASNVAGKDSCSAQL-GVQEPPRFIK---KLEPS--RIVKQ 305
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV--NVIYPPEVSVEKQWIH 60
+++ N SL +++V G Y C A N++G S +V PP + + + +H
Sbjct: 53 KMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVH 112
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
C + + P +V W++DG + + +L + + G Y
Sbjct: 113 ETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQY 172
Query: 121 MCQASNNLGSSQQFIQLS 138
C ASN LG++ +L+
Sbjct: 173 NCSASNPLGTASSSAKLT 190
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
L++ ++++ +G Y C A +N S S + + V PP + + T + C
Sbjct: 349 LEMYNLSVEDSGDYTCEA-HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 407
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
+ PP +V W +D + G + + + S+ + ++ D G Y C+ASN++GS
Sbjct: 408 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-------SVE 55
++ L+ N +L + +VT AG Y C ASN G+ S + + V PP +
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIV 303
Query: 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
KQ HT R E C + +P KV W++D T I + M L + ++
Sbjct: 304 KQDEHT----RYE--CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357
Query: 116 DFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK 148
D G+Y C+A N GS+ L + PVF+K
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLK-VKEPPVFRK 389
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW 83
G YQC ASN++G T I + PP + I T ++ + P V W
Sbjct: 453 GEYQCKASNDVGSDTCVGSIT-LKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAW 511
Query: 84 FRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
F+D G + I + S +L + + G Y CQ N G+ + F LS
Sbjct: 512 FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C V P ++ W+++ T + M + SL++ + +D G Y C+A N++G+
Sbjct: 27 CKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGA 86
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW 83
G+Y C A+N +G + + V P+++ + ++A + C NP V W
Sbjct: 75 GIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
+ +A+ RI + E SL + +++ D G Y C A N+LG++
Sbjct: 135 IKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNYMCQA 124
A +C V + P ++ W R+ I L D S ++ L + ++D+D G Y C A
Sbjct: 25 ATFMCAVESYPQPEISWTRNKILIKL---FDTRYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 125 SNNLGSS 131
+N +G +
Sbjct: 82 NNGVGGA 88
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 19 TLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIIC 71
T + +Y+C+ASNN+GE S + + V+ ++ I P ++ A ++C
Sbjct: 72 TPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLC 130
Query: 72 NVYANPPAKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
NP ++ WF+D + GRI S +L + +++D G Y C A+N+
Sbjct: 131 AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Query: 129 GS 130
G+
Sbjct: 191 GT 192
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
G Y C A+N GE + F+ + P + ++ + T + + ++C+ P ++
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET--TYENGQVTLVCDAEGEPIPEIT 127
Query: 83 WFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135
W R DG T G GRI++ SL ++ +K +D G Y C+A++ +G Q+ +
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 187
Query: 136 QL 137
L
Sbjct: 188 YL 189
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 50 PEVSVEKQWIHTAPDMRAEII--CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
P +S+ ++ + + E+ C +P + WFR+G I + + S+ + L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--L 60
Query: 108 LVRHIKDTDFGNYMCQASNNLGSS--QQFIQLSGIPNI 143
VR+I ++D G Y+C+A+N G Q F+Q+ P+I
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI 98
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 24 GLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII--CNVYANPPAK 80
G+Y+C GE ++ IV V PP +S+ ++ + + E+ C +P
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL 137
+ WFR+G I + + S+ + L VR+I ++D G Y+C+A+N G Q F+Q+
Sbjct: 226 ISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMR 66
R L + ++ AG+Y+C A++ G++ ++ + + EV V Q D
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGED-- 115
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV------RHIKDTDFGNY 120
AE++C V ++P V W +T +S + ++L +I +D G Y
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTT-------ISDNRFAMLANNNLQILNINKSDEGIY 168
Query: 121 MCQASNNLGSSQQFIQLSGIPNIP 144
C+ F + I N+P
Sbjct: 169 RCEGRVEARGEIDFRDIIVIVNVP 192
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 24 GLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII--CNVYANPPAK 80
G+Y+C GE ++ IV V PP +S+ ++ + + E+ C +P
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQL 137
+ WFR+G I + + S+ + L VR+I ++D G Y+C+A+N G Q F+Q+
Sbjct: 130 ISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-------SVE 55
++ L+ N +L + +VT AG Y C ASN G+ S + + V PP +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQAPPRFIKKLEPSRIV 111
Query: 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
KQ HT R E C + +P KV W++D T I + M L + ++
Sbjct: 112 KQDEHT----RYE--CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 116 DFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK 148
D G+Y C+A N GS+ L + PVF+K
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLK-VKEPPVFRK 197
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
L++ ++++ +G Y C A +N S S + + V PP + + T + C
Sbjct: 157 LEMYNLSVEDSGDYTCEA-HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
+ PP +V W +D + G + + + S+ + ++ D G Y C+ASN++GS
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C+V P K+ W +D I GG M + +L V + D G Y C ASN G
Sbjct: 27 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 131 SQQFIQLSGIPNIPVFQK 148
QL G+ P F K
Sbjct: 87 DSCSAQL-GVQAPPRFIK 103
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
L++ ++++ +G Y C A +N S S + + V PP + + T + C
Sbjct: 157 LEMYNLSVEDSGDYTCEA-HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
+ PP +V W +D + G + + + S+ + ++ D G Y C+ASN++GS
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV--SVEKQWIH 60
++ L+ N +L + +VT AG Y C ASN G+ S + + V PP +E I
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRI- 110
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
D C + +P KV W++D T I + M L + ++ D G+Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQK 148
C+A N GS+ L + PVF+K
Sbjct: 171 TCEAHNAAGSASSSTSLK-VKEPPVFRK 197
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C+V P K+ W +D I GG M + +L V + D G Y C ASN G
Sbjct: 27 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 131 SQQFIQLSGIPNIPVFQK 148
QL G+ P F K
Sbjct: 87 DSCSAQL-GVQEPPRFIK 103
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTD 116
++T + I C V+A P A + WFRDG + I ++ + L V + D
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 117 FGNYMCQASNNLG-SSQQFI 135
FGNY C A N +G S +FI
Sbjct: 88 FGNYNCTAVNRIGQESLEFI 107
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII- 70
+L + V+ + G Y+C A N+ G T + I+ V + +W+ D A+I
Sbjct: 257 TLQIPSVSFEDEGTYECEAENSKGRDTVQGRII-------VQAQPEWLKVISDTEADIGS 309
Query: 71 -----CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
C P V W R+G + R+++ + S L D G Y C A
Sbjct: 310 NLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLE----DSGMYQCVAE 365
Query: 126 NNLGS 130
N G+
Sbjct: 366 NKHGT 370
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII-CNVYANPPA-K 80
AG+YQC+ASN +G S+ I+ + E S E++ A + ++ CN A+ P
Sbjct: 73 AGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLS 132
Query: 81 VEWFRD--GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
W + I GR VS +L + +D GNY C A++++ S + + S
Sbjct: 133 YRWLLNEFPNFIPTDGR--HFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSV-FS 189
Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYL----LKFREREELTPWRNIVIPSD 194
+ + + +R P + + +TY+ + Q + F WR + D
Sbjct: 190 KFAQLNLAAEDTRLFAPS-IKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKV----D 244
Query: 195 GSLA 198
GSL+
Sbjct: 245 GSLS 248
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSL 107
PE S E+Q + + C A+PPA W +GT + L G R H + +
Sbjct: 16 PEESTEEQVL---------LACRARASPPATYRWKMNGTEMKLEPGSR---HQLVGGNLV 63
Query: 108 LVRHIKDTDFGNYMCQASNNLGS 130
++ K D G Y C ASN +G+
Sbjct: 64 IMNPTKAQDAGVYQCLASNPVGT 86
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNV------IYPPEVSVE-KQWIH 60
+L + R G Y C+A++++ ST SK +N+ ++ P + +
Sbjct: 158 NLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETY 217
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
+ + C + NP +++W + + G + ++ + +L + + D G Y
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRK------VDGSLSPQWTTAEPTLQIPSVSFEDEGTY 271
Query: 121 MCQASNNLG 129
C+A N+ G
Sbjct: 272 ECEAENSKG 280
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 25 LYQCIASNNIGE-STSKNFIV---NVIYP--PEVSVEKQWIHTAPDMRAEIICNVYANPP 78
+Y+C A+N++GE +TS V + P P + + Q A ++C NP
Sbjct: 78 IYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPD 137
Query: 79 AKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
++ WF+D + T GRI S +L + +++D G Y C A+N+ G+
Sbjct: 138 PEISWFKDFLPVDPATSNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAGT 189
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI--- 69
L + V + G Y+C A N G T + I+ + + W+ D A+I
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRII-------IHAQPDWLDVITDTEADIGSD 311
Query: 70 ---ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
C P V W RDG + RI++ + S LV D G Y C A N
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE----DSGMYQCVAEN 367
Query: 127 NLGS 130
G+
Sbjct: 368 KHGT 371
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 55 EKQWIHTA-PDMRAE----IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
E+Q HT P+ AE + C ANPPA W +GT + +G D L++
Sbjct: 8 EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVI 65
Query: 110 RH-IKDTDFGNYMCQASNNLGS 130
+ +K D G+Y C A+N G+
Sbjct: 66 SNPVKAKDAGSYQCVATNARGT 87
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 18 VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV-EKQWIHTAPDMRAEIICNVYAN 76
V K AG YQC+A+N G S+ + + E S E+ + C+ +
Sbjct: 69 VKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPH 128
Query: 77 PPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135
PA W + + VS +L + + +D GNY C A++++ + +
Sbjct: 129 YPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV 188
Query: 136 QLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYS 168
S + + + +R+ P + + DTY+
Sbjct: 189 -FSKFSQLSLAAEDARQYAP-SIKAKFPADTYA 219
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQWIHTAPDMRA 67
++L +L+ G Y C+A + ++ ++ +V + P ++ + T+
Sbjct: 627 MELKNASLQDQGDYVCLAQDR--KTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESI 684
Query: 68 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
E+ C NPP ++ WF+D + I + +L +R ++ D G Y CQA +
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 128 LGSSQ 132
LG ++
Sbjct: 743 LGCAK 747
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIHTAPDMRAE 68
+L +D VT GLY C AS+ + + F V V P V S + + R
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTF-VRVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
I PP +++W+++G + H H L + + + D GNY +N +
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYTVILTNPI 404
Query: 129 GSSQQFIQLSGIPNIP 144
+Q +S + +P
Sbjct: 405 SKEKQSHVVSLVVYVP 420
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 25 LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
+Y+C+A N++GE T + + V+ ++ I P ++ A ++C NP
Sbjct: 78 VYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 78 PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
++ WF+D + GRI S +L + ++TD G Y C A+N+ G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 25 LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
+Y+C+A N++GE T + + V+ ++ I P ++ A ++C NP
Sbjct: 78 VYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 78 PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
++ WF+D + GRI S +L + ++TD G Y C A+N+ G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAG 188
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMC 122
+ + ++ C V NP + W +GT + +G +D S SLL+ + T D G Y C
Sbjct: 22 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQDAGTYQC 79
Query: 123 QASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
A+N+ G S + +Q + + N +S S R G G L+ +SG + Y F
Sbjct: 80 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGELSYAWIF 138
Query: 178 REREELTPWRNIVIPSDGSL 197
E R V G+L
Sbjct: 139 NEYPSYQDNRRFVSQETGNL 158
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
L++ + AG Y+C+A N+ G++ +K + P V + IH A + C
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND-IHVAMEESVFWECK 317
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
P W ++G + RI + E+ +L + + +D G Y C A N G
Sbjct: 318 ANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
AG YQCIA+N+ G S+ + Y + T R + + + PP E
Sbjct: 74 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR--STVSVRRGQGMVLLCGPPPHSGE 131
Query: 83 ----WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
W + R VS E +L + ++ +D GNY C +N +
Sbjct: 132 LSYAWIFNEYPSYQDNR--RFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 179
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNI------GESTS---KNFIVNVIYPPEVSVEKQWIHTA 62
+L + +V G Y C+ +N + G T +N V Y P++ V Q+ T
Sbjct: 157 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV--QFPETV 214
Query: 63 PDMRAEII---CNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
P + + C NP + W R DG I R H S+ L + + + D G
Sbjct: 215 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR--RHKSN--GILEIPNFQQEDAG 270
Query: 119 NYMCQASNNLGSSQQFIQLS 138
+Y C A N+ G + QL+
Sbjct: 271 SYECVAENSRGKNVAKGQLT 290
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
AE+ C V PP V W + G + R+ +H LL+ TD G Y+C+A N
Sbjct: 31 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
AE+ C V PP V W + G + R+ +H LL+ TD G Y+C+A N
Sbjct: 32 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMC 122
+ + ++ C V NP + W +GT + +G +D S SLL+ + T D G Y C
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 123 QASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
A+N+ G S + +Q + + N +S S R G G L+ +SG + Y F
Sbjct: 81 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGELSYAWIF 139
Query: 178 REREELTPWRNIVIPSDGSL 197
E R V G+L
Sbjct: 140 NEYPSYQDNRRFVSQETGNL 159
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
L++ + AG Y+C+A N+ G++ +K + P V + IH A + C
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND-IHVAMEESVFWECK 318
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
P W ++G + RI + E+ +L + + +D G Y C A N G
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
AG YQCIA+N+ G S+ + Y + T R + + + PP E
Sbjct: 75 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR--STVSVRRGQGMVLLCGPPPHSGE 132
Query: 83 ----WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
W + R VS E +L + ++ +D GNY C +N +
Sbjct: 133 LSYAWIFNEYPSYQDNR--RFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNI------GESTS---KNFIVNVIYPPEVSVEKQWIHTA 62
+L + +V G Y C+ +N + G T +N V Y P++ V Q+ T
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV--QFPETV 215
Query: 63 PDMRAEII---CNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
P + + C NP + W R DG I R H S+ L + + + D G
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR--RHKSN--GILEIPNFQQEDAG 271
Query: 119 NYMCQASNNLGSSQQFIQLS 138
+Y C A N+ G + QL+
Sbjct: 272 SYECVAENSRGKNVAKGQLT 291
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
AE+ C V PP V W + G + R+ +H LL+ TD G Y+C+A N
Sbjct: 32 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 25 LYQCIASNNIGESTSKNFIV----NVIYP--PEVSVEKQWIHTAPDMRAEIICNVYANPP 78
+Y+C+A N GE T + + + P P + + Q A ++C NP
Sbjct: 78 IYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 79 AKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
++ WF+D + T GRI S L + ++TD G Y C ASN+ G
Sbjct: 138 PEITWFKDFLPVDPSTSNGRIKQLRSG---GLQIESSEETDQGKYECVASNSAG 188
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPD 64
+ ++ + VT K G Y C+ S G++ + I + V+ PP
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119
Query: 65 MRAEIICNVY-ANPPAKVEWFRDG----TAITLGGRIDMH----VSSEKHSLLVRHIKDT 115
RA + C+ + +PP++ WF+DG TA R M+ + + L+ +
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 116 DFGNYMCQASNNLGSSQQ 133
D G Y CQA N G++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMR 197
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 68 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
E+ C NPP ++ WF+D + I + + +L +R ++ D G Y CQA +
Sbjct: 29 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSV 86
Query: 128 LGSSQ 132
LG ++
Sbjct: 87 LGCAK 91
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 25 LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
+Y+C+A N++GE T + + V+ ++ I P ++ A ++C NP
Sbjct: 78 VYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 78 PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
++ WF+D + GRI S +L + ++TD G Y C A+N+ G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAG 188
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 24 GLYQCIASNNIGE--STSKNFIVNVI-YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 80
G Y+C+A+N+ G S+ N V V P S+ P I C +P
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
V+W + +T DM V ++ L + +KD+ NY C A ++LG + Q++
Sbjct: 237 VKWMQGAEDLT--PEDDMPVG--RNVLELTDVKDS--ANYTCVAMSSLGVIEAVAQIT 288
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEII 70
L + VT A +YQ A+N G S S + V P ++ + K + + +R E++
Sbjct: 64 LIIASVTDDDATVYQVRATNQ-GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 71 C---NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASN 126
P + W + I G + V+ SL+ + ++ D G Y+ A N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 127 NLGSSQQFIQL--SGIPNIPVFQKSSRRLGPDGYRLVW---QVDTYSGIIQYLLKFRERE 181
G Q+ ++L + +P+ P K S + D L W D S I Y++ E+
Sbjct: 183 RFGIDQKTVELDVADVPDPPRGVKVSD-VSRDSVNLTWTEPASDGGSKITNYIV---EKC 238
Query: 182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
T R + + G Y + L T Y+ V+A+N+FG S+PS+
Sbjct: 239 ATTAERWLRV-------GQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE 284
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
A ++C V +P V+W+R G I G RI H L++ + D D Y +
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI-QEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 124 ASNNLGS 130
A+N GS
Sbjct: 81 ATNQGGS 87
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKN--FIVNVIYPPEVSVEKQWIH 60
+I R L + VT +G Y A+N G++TS + PP Q +
Sbjct: 55 QISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFG 118
+ + V P V+++RDG I +D +S E +SLL+ D G
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ--SSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 119 NYMCQASNNLGSSQQFIQL 137
Y A+N++G + +L
Sbjct: 173 TYSVNATNSVGRATSTAEL 191
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 71 CNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
++ P +V WFRDG I TL G + + S + L + + + G Y +A+N
Sbjct: 27 AHISGFPVPEVSWFRDGQVISTSTLPG-VQISFSDGRAKLTIPAVTKANSGRYSLKATNG 85
Query: 128 LGSSQQFIQL-----SGIPN-IPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF-RER 180
G + +L + PN + Q + R G RL +V +GI ++KF R+
Sbjct: 86 SGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ-VRLQVRV---TGIPTPVVKFYRDG 141
Query: 181 EELTPWRNIVIPSDGSLAGPIYTQSY 206
E+ + I +G L + ++Y
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAY 167
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKN--FIVNVIYPPEVSVEKQWIH 60
+I R L + VT +G Y A+N G++TS + PP Q +
Sbjct: 55 QISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFG 118
+ + V P V+++RDG I +D +S E +SLL+ D G
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ--SSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 119 NYMCQASNNLGSSQQFIQL 137
Y A+N++G + +L
Sbjct: 173 TYSVNATNSVGRATSTAEL 191
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 71 CNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
++ P +V WFRDG I TL G + + S + L + + + G Y +A+N
Sbjct: 27 AHISGFPVPEVSWFRDGQVISTSTLPG-VQISFSDGRAKLTIPAVTKANSGRYSLKATNG 85
Query: 128 LGSSQQFIQL-----SGIPN-IPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF-RER 180
G + +L + PN + Q + R G RL +V +GI ++KF R+
Sbjct: 86 SGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ-VRLQVRV---TGIPTPVVKFYRDG 141
Query: 181 EELTPWRNIVIPSDGSLAGPIYTQSY 206
E+ + I +G L + ++Y
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAY 167
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 25 LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
+Y+C A+N++GE + + ++V+ ++ I P ++ A ++C NP
Sbjct: 79 IYECTATNSLGE-INTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNP 137
Query: 78 PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
++ WF+D + GRI S +L + +++D G Y C A+N+ G+
Sbjct: 138 DPEISWFKDFLPVDPAASNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAGT 190
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIHTAPDMRAE 68
+L +D VT GLY C AS+ + + F V V P V S + + R
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTF-VRVHEKPFVAFGSGMESLVEATVGERVR 219
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
I PP +++W+++G + H H L + + + D GNY +N +
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYTVILTNPI 274
Query: 129 GSSQQFIQLSGIPNIP 144
+Q +S + +P
Sbjct: 275 SKEKQSHVVSLVVYVP 290
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 44 VNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMH 99
+NV Y PEV++E W D++ + C ANPPA + W TL G +
Sbjct: 1 LNVQYEPEVTIEGFDGNWYLQRTDVK--LTCKADANPPATEYHW------TTLNGSLPKG 52
Query: 100 VSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLS 138
V ++ +L R I + G Y+C+A+N +G+ ++++
Sbjct: 53 VEAQNRTLFFRGPITYSLAGTYICEATNPIGTRSGQVEVN 92
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 40 KNFIVNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGR 95
++ +NV Y PEV++E W D++ + C ANPPA + W TL G
Sbjct: 207 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVK--LTCKADANPPATEYHW------TTLNGS 258
Query: 96 IDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIP 144
+ V ++ +L + I + G Y+C+A+N +G S Q + ++ P P
Sbjct: 259 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTP 310
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
+ + P E++ ++ + P V W++DG + GR+ + + + L V+ + D G
Sbjct: 6 VRSTPGGDLELVVHL-SGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAG 64
Query: 119 NYMCQASNN 127
Y+C A +
Sbjct: 65 EYLCDAPQD 73
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + ++ +G Y C+ +N++G S ++ V P ++ A C
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 365
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V W +DG AI + L + +K D G Y C N+ S+
Sbjct: 366 QYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 132 QQF--IQLSGIPNIPV----FQKSSRRLGP 155
+ ++L G + PV FQ+ + GP
Sbjct: 416 EASAELKLGGRFDPPVIRQAFQEETMEPGP 445
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
L ++ V AG + C A N G + NV PP +E A A++ C
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPL-NVYVPPRWILEPTDKAFAQGSDAKVECK 737
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNL 128
P +V W + T G D+ S E+ +L V +I+ T+ G Y+C+A N +
Sbjct: 738 ADGFPKPQVTW-KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGI 796
Query: 129 GS 130
GS
Sbjct: 797 GS 798
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEI 69
L++ V GLY+CIA + +G E ++K +NV P + +EK+ I + +
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAK---LNVYGLPYIRQMEKKAIVAGETLI--V 546
Query: 70 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNL 128
C V P + W RD A+ + + + + +L++ ++ +++D Y C A N
Sbjct: 547 TCPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQE 603
Query: 129 GSSQQF---IQLSGIPNIPVF 146
G S + +Q+ +P I F
Sbjct: 604 GYSARGSLEVQVMVLPRIIPF 624
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Query: 8 YNRESLDLDRVTLKLAGLYQCIASNN--IGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM 65
++ L ++ V + G+YQC N+ E++++ + PP + Q P
Sbjct: 386 HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGP 445
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRID----MHVSSEKHSLL-VRHIKDTDFGNY 120
+ C NP ++ W DG I R + V+ + S L + + D G Y
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505
Query: 121 MCQASNNLGSSQQFIQLS--GIPNIPVFQKSS 150
C A + +G ++ +L+ G+P I +K +
Sbjct: 506 KCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKA 537
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 26 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII---CNV-YANPPAKV 81
Y C+A N G S + V V+ P + P + + C+V + P +
Sbjct: 595 YTCVAKNQEGYSARGSLEVQVMVLPRII--PFAFEEGPAQVGQYLTLHCSVPGGDLPLNI 652
Query: 82 EWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
+W DG AI+ G V L + ++ + GN+ C A NL QQF
Sbjct: 653 DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA-RNLAGHQQF 705
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 67 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 119
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 120 YMCQASNNLGS 130
Y C A N GS
Sbjct: 115 YACLARNQFGS 125
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 1 EKEIELLYNRE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
++ I +++N + +L + + AG+Y+C+ + G + V + +K
Sbjct: 49 QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-------QKL 101
Query: 58 WIHTAPDMR-------AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR 110
AP + A I+C+V ++ P + W G + L + V S + L +R
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIR 160
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP 144
IK TD G Y C+ F + I N+P
Sbjct: 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVP 194
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 40 KNFIVNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGR 95
++ +NV Y PEV++E W D++ + C ANPPA + W TL G
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVK--LTCKADANPPATEYHW------TTLNGS 273
Query: 96 IDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGS 130
+ V ++ +L + I + G Y+C+A+N +G+
Sbjct: 274 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 309
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 40 KNFIVNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGR 95
++ +NV Y PEV++E W D++ + C ANPPA + W TL G
Sbjct: 208 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVK--LTCKADANPPATEYHW------TTLNGS 259
Query: 96 IDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGS 130
+ V ++ +L + I + G Y+C+A+N +G+
Sbjct: 260 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 295
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 4/131 (3%)
Query: 7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR 66
L +L + VT +G Y C+ + E+ S + + V+ PP ++ M
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYK-NENISASAELTVLVPPWFLNHPSNLYAYESMD 329
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
E C V P V W ++G + + S +L + + +D G Y C A N
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAEN 386
Query: 127 NLGSSQQFIQL 137
G++Q QL
Sbjct: 387 EAGNAQSSAQL 397
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM------ 65
+L + R+ +G+Y+C A N T V ++ P + + ++ ++
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
A + C V PP W R I L R + +LL+ ++ D D G Y C
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQL--RSKKYSLLGGSNLLISNVTDDDSGTYTC 292
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 24 GLYQCIASNNIGESTSKNFIVNV-IYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKV 81
G+Y C+A N +GE+ S + + V I + + A A + C +P +
Sbjct: 85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTI 144
Query: 82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
W +DG+ + D ++ L++ + + +D G Y+C +N +G + + +
Sbjct: 145 SWKKDGSPLD---DKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
Query: 142 NIPVFQKSS 150
P F K++
Sbjct: 202 ERPSFVKAA 210
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
P + E + + T A++ C + P ++W+R G + + M H+L V
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 110 RHIKDTDFGNYMCQASNNLG 129
+ D G Y C A+N +G
Sbjct: 68 MTEEQEDEGVYTCIATNEVG 87
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 24 GLYQCIASNNIGE-STSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA 79
G+Y CIA+N +GE TS ++ +P EK + +R ++ P
Sbjct: 76 GVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM--YIGRPVP 133
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNLGS 130
+ WF + I + + L+++++ + T G Y Q SN G+
Sbjct: 134 AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 1 EKEIELLYNRE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
++ I +++N + +L + + AG+Y+C+ + G + V + +K
Sbjct: 49 QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-------QKL 101
Query: 58 WIHTAPDMR-------AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR 110
AP + A I+C+V ++ P + W G + L + V S + L +R
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIR 160
Query: 111 HIKDTDFGNYMCQA 124
IK TD G Y C+
Sbjct: 161 GIKKTDEGTYRCEG 174
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 40 KNFIVNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGR 95
++ +NV Y PEV++E W D++ + C ANPPA + W TL G
Sbjct: 207 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVK--LTCKADANPPATEYHW------TTLNGS 258
Query: 96 IDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGS 130
+ V ++ +L + I + G Y+C+A+N +G+
Sbjct: 259 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 294
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVE 82
G+Y C N +G+ + + V+ P+ + ++ I I C V P V
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342
Query: 83 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
W + ++ GGR + S L+++ +K+ D G Y C+A+N G
Sbjct: 343 WSHNAKPLS-GGRATVTDSG----LVIKGVKNGDKGYYGCRATNEHGD 385
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNV-IYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK 80
G Y C+A N +G++ S++ + + + + VE + A A + C P
Sbjct: 81 GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140
Query: 81 VEWFRDGT------AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ W +DG A++ G + + + +LL+ +++ D GNY C A N +G+ +
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIV-DGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL----VRHIKDTDFGNYMC 122
A + C V P +EWF+DG ++ + V + +L ++ K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 123 QASNNLGSS 131
A N +G +
Sbjct: 87 VAKNRVGQA 95
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNV-IYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK 80
G Y C+A N +G++ S++ + + + + VE + A A + C P
Sbjct: 81 GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140
Query: 81 VEWFRDGT------AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ W +DG A++ G + + + +LL+ +++ D GNY C A N +G+ +
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIV-DGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL----VRHIKDTDFGNYMC 122
A + C V P +EWF+DG ++ + V + +L ++ K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 123 QASNNLGSS 131
A N +G +
Sbjct: 87 VAKNRVGQA 95
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 26 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANPP 78
Y+C+A N +G++ S + + + + I P R + C NP
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ W ++ T + + + S + L + + ++ D G Y C A N++G+
Sbjct: 140 PNIYWIKNQTKVDMS---NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEH 190
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 26 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANPP 78
Y+C+A N +G++ S + + + + I P R + C NP
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 141
Query: 79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ W ++ T + + + S + L + + ++ D G Y C A N++G+
Sbjct: 142 PNIYWIKNQTKVDMS---NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEH 192
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + ++ +G Y C+ +N++G S ++ V P ++ A C
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 335
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V W +DG AI + L + +K D G Y C N+ S+
Sbjct: 336 QYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 385
Query: 132 QQFIQL 137
+ +L
Sbjct: 386 EASAEL 391
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 67 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 119
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 28 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 85
Query: 120 YMCQASNNLGS 130
Y C A N GS
Sbjct: 86 YACLARNQFGS 96
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + ++ +G Y C+ +N++G S ++ V P ++ A C
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V W +DG AI + L + +K D G Y C N+ S+
Sbjct: 330 QYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 379
Query: 132 QQFIQL 137
+ +L
Sbjct: 380 EASAEL 385
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 67 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 119
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 22 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 120 YMCQASNNLGS 130
Y C A N GS
Sbjct: 80 YACLARNQFGS 90
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + ++ +G Y C+ +N++G S ++ V P ++ A C
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 332
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V W +DG AI + L + +K D G Y C N+ S+
Sbjct: 333 QYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 382
Query: 132 QQFIQL 137
+ +L
Sbjct: 383 EASAEL 388
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 67 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 119
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 22 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 120 YMCQASNNLGS 130
Y C A N GS
Sbjct: 80 YACLARNQFGS 90
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 69 IICNVYANPPAKVEWFR--DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
++C + P W++ +GT ++ V +L+++ D G Y+C +N
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 127 NLG 129
++G
Sbjct: 295 SVG 297
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSPHRPILQAGLPANASTVV 132
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV-------SSEKHSLLVRHI 112
E +C VY++ ++W + +G+ G + V SS L + ++
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
+ D G Y+C+ SN +G + Q L+ +P
Sbjct: 193 TEADAGEYICKVSNYIGQANQSAWLTVLP 221
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSRHRPILQAGLPANASTVV 132
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV-------SSEKHSLLVRHI 112
E +C VY++ ++W + +G+ G + V SS L + ++
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
+ D G Y+C+ SN +G + Q L+ +P
Sbjct: 193 TEADAGEYICKVSNYIGQANQSAWLTVLP 221
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
++L + V+ + +G Y C+ASN +G S V V P E + + AP ++
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLV 333
Query: 71 CNVYANPPAKVEWFRDGTAI-TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
C NP V+W +G + + + V+ + +++ R + + Y C SN G
Sbjct: 334 CRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHG 391
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
P+ + Q + D+ E I + P + W++ G + + +L +
Sbjct: 225 PQGTASSQMVLRGMDLLLECIASGVPTP--DIAWYKKGGDLPSD---KAKFENFNKALRI 279
Query: 110 RHIKDTDFGNYMCQASNNLGSSQQFIQL 137
++ + D G Y C ASN +GS + I +
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISV 307
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
A D A + C +P + W ++G T GR E+ +L +++++ +D G Y
Sbjct: 21 AVDGTALLKCKATGDPLPVISWLKEG--FTFPGRDPRATIQEQGTLQIKNLRISDTGTYT 78
Query: 122 CQASNNLG 129
C A+++ G
Sbjct: 79 CVATSSSG 86
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+ VT + G Y C+ S G S + + + V+ PP RA + C
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTC 129
Query: 72 NVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFGNYMCQ 123
+ +PP++ WF+DG + + S+ + L+ + +D G Y C+
Sbjct: 130 SEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
Query: 124 ASNNLGS 130
A N G+
Sbjct: 190 ARNGYGT 196
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
A ++C V +P V+W+R G I G RI H L++ + D D Y +
Sbjct: 20 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI-QEFKGGYHQLIIASVTDDDATVYQVR 78
Query: 124 ASNNLGS 130
A+N GS
Sbjct: 79 ATNQGGS 85
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
A ++C V +P V+W+R G I G RI H L++ + D D Y +
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI-QEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 124 ASNNLGS 130
A+N GS
Sbjct: 81 ATNQGGS 87
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL + V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 76 SLIXESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSPHRPILQAGLPANASTVV 131
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV-------SSEKHSLLVRHI 112
E +C VY++ ++W + +G+ G + V SS L + ++
Sbjct: 132 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 191
Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
+ D G Y+C+ SN +G + Q L+ +P
Sbjct: 192 TEADAGEYICKVSNYIGQANQSAWLTVLP 220
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
A C V A+ P V W +D + + + + L + +K D G Y +A N
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Query: 127 NLGSSQQFIQLS 138
+ G+ ++ + L+
Sbjct: 560 SYGTKEEIVFLN 571
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
A C V A+ P V W +D + + + + L + +K D G Y +A N
Sbjct: 394 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 453
Query: 127 NLGSSQQFIQLS 138
+ G+ ++ + L+
Sbjct: 454 SYGTKEEIVFLN 465
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWI 59
I+L + + SL ++ V G Y C+ N G S + + ++V+ + P +
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPAN 123
Query: 60 HTAP-DMRAEIICNVYANPPAKVEWFR-----------DGT--AITLGGRIDMHVSSEKH 105
TA E C VY++ ++W + DGT L I V ++
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L + ++ + D G Y+C+A+N +G +++ LS
Sbjct: 184 -LRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
D A+ P W +DG AIT GG+ + L + +D G Y C
Sbjct: 21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80
Query: 124 ASNNLGSSQQFIQLS 138
N+ GS +L+
Sbjct: 81 VKNSAGSVSSSCKLT 95
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 21 KLAGLYQCIASNNIGESTSKNFIVNVIYPP-EVSVEKQWIHTAPDMRAEIICN------- 72
K AG+Y+ I ++ G+ S+ +V+ + + V K+ +A D++ +
Sbjct: 71 KDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSF 130
Query: 73 -VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
Y KV W +G+AI R+ V+ E+ L + D G Y+ + +
Sbjct: 131 VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH 190
Query: 132 QQFIQLSG 139
Q+ + LSG
Sbjct: 191 QKTVDLSG 198
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNN 127
+ CNV+ +PP +V W ++ A+ ++ + + + + + D G Y N
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301
Query: 128 LGS 130
GS
Sbjct: 302 YGS 304
>pdb|1OWW|A Chain A, Solution Structure Of The First Type Iii Module Of Human
Fibronectin Determined By 1h, 15n Nmr Spectroscopy
Length = 98
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
P+ + + W S I +Y+L++R + + W+ IP + SY I GL+
Sbjct: 20 PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPG 71
Query: 215 TQYEASVLAKNRFG 228
YE +++ ++G
Sbjct: 72 VVYEGQLISIQQYG 85
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 41 NFIVNVIYPPEVSV---EKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRI 96
+FI+++ Y PEVSV + W + CN ANPP K W R L G+
Sbjct: 203 SFILDIQYAPEVSVTGYDGNWF--VGRKGVNLKCNADANPPPFKSVWSR------LDGQW 254
Query: 97 DMHVSSEKHSLLVRHIKDTDF-GNYMCQASNNLG--SSQQFIQLSGIP 141
+ + ++L H ++ G Y+C+ +N+LG S Q+ I +S P
Sbjct: 255 PDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 25/152 (16%)
Query: 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT------ 61
Y S+ +D V G Y CI N G S + + ++V+ E S + +
Sbjct: 71 YATWSIIMDSVVPSDKGNYTCIVENEYG-SINHTYQLDVV---ERSPHRPILQAGLPANK 126
Query: 62 --APDMRAEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHS 106
A E +C VY++P ++W + +G+ I + + E
Sbjct: 127 TVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 186
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L +R++ D G Y C A N++G S L+
Sbjct: 187 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLT 218
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT--- 61
++ Y S+ +D V G Y CI N G S + + ++V+ E S + +
Sbjct: 67 KVRYATWSIIMDSVVPSDKGNYTCIVENEYG-SINHTYQLDVV---ERSPHRPILQAGLP 122
Query: 62 -----APDMRAEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSE 103
A E +C VY++P ++W + +G+ I + + E
Sbjct: 123 ANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 182
Query: 104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L +R++ D G Y C A N++G S L+
Sbjct: 183 MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLT 217
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 25/152 (16%)
Query: 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT------ 61
Y S+ +D V G Y CI N G S + + ++V+ E S + +
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYG-SINHTYQLDVV---ERSPHRPILQAGLPANK 125
Query: 62 --APDMRAEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHS 106
A E +C VY++P ++W + +G+ I + + E
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 185
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L +R++ D G Y C A N++G S L+
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLT 217
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
A I+C+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 19 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEG 75
>pdb|2HA1|A Chain A, Complex Of The First And Second Type Iii Domains Of Human
Fibronectin In Solution
Length = 201
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
P+ + + W S I +Y+L++R + + W+ IP + SY I GL+
Sbjct: 15 PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPG 66
Query: 215 TQYEASVLAKNRFG 228
YE +++ ++G
Sbjct: 67 VVYEGQLISIQQYG 80
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMH--VSSEK--HSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
P V W+ +G + D+H + SEK HSL+ ++ +D G Y C A N G +
Sbjct: 33 PAPDVSWYLNGRTVQ---SDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEAT 89
Query: 133 QFIQL 137
+QL
Sbjct: 90 FTVQL 94
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 37/157 (23%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G +N Y + V ++W H P ++A
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGS-------INHTY--HLDVVERWPHR-PILQAGLPA 118
Query: 68 ----------EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEK 104
E +C VY++ ++W + +G+ G + V E
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 178
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
L +R++ D G Y C A N++G S L+ +P
Sbjct: 179 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 37
+KEIE+LY R VT + AG Y C+A N+IG S
Sbjct: 175 DKEIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 205
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 160 LVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA 219
L W + Y +++R P++ + DG + T Y+I GL F++Y
Sbjct: 26 LTWDSGNSEPVTYYGIQYRAAGTEGPFQEV----DG-----VATTRYSIGGLSPFSEYAF 76
Query: 220 SVLAKNRFGWSRPSKA 235
VLA N G PS+A
Sbjct: 77 RVLAVNSIGRGPPSEA 92
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
A C+ P V W R G ++ R + + K + + ++ +D GNY N
Sbjct: 26 ARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 85
Query: 127 NLGSSQQFIQLS 138
+ G + L+
Sbjct: 86 SEGKQEAEFTLT 97
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 142 KLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 184
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
A C+ P V W R G ++ R + + K + + ++ +D GNY N
Sbjct: 32 ARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91
Query: 127 NLGSSQQFIQLS 138
+ G + L+
Sbjct: 92 SEGKQEAEFTLT 103
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 140 KLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQAS 125
A C V P +V WF+D + + E + SL + + D Y C+A
Sbjct: 59 ARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 126 NNLGSSQQFIQL 137
N+LG + +L
Sbjct: 119 NSLGEATCTAEL 130
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 140 KLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 137 KLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 179
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQAS 125
A C V P +V WF+D + + E + SL + + D Y C+A
Sbjct: 59 ARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 126 NNLGSSQQFIQL 137
N+LG + +L
Sbjct: 119 NSLGEATCTAEL 130
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 45 NVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
V++ E ++ + A + C V A +V W++DG ++ ++ +
Sbjct: 8 KVVFAKEQPAHRE-VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65
Query: 105 HSLLVRHIKDTDFGNYMCQASNN 127
L+V+ + G Y C+A
Sbjct: 66 RRLVVQQAGQAEAGEYSCEAGGQ 88
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 44 VNVIYPPEV-SVEKQWIHTAPDMRAE--IICNVYANPPAKVEWFRDGTAITLGGRIDMHV 100
+ V YPP V S+E+ P++R E I V NPP + W +G + I +
Sbjct: 3 LTVYYPPRVVSLEE------PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
Query: 101 SSE----KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135
E + LL + GNY A N LG++ Q I
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 68 SLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSPHRPILQAGLPANASTVV 123
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVR 110
E +C VY++ ++W + +G+ G + V E L +R
Sbjct: 124 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 183
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
++ D G Y C A N++G S L+ +P
Sbjct: 184 NVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 214
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 37
+KEIE+LY R VT + AG Y C+A N+IG S
Sbjct: 174 DKEIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 204
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWI 59
I+L + + SL ++ V G Y C+ N G S + + ++V+ + P +
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPAN 231
Query: 60 HTAP-DMRAEIICNVYANPPAKVEWFR-----------DGTA-ITLGGRIDMHVSSEKHS 106
TA E C VY++ ++W + DGT +T+ + + ++
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 107 LLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
+L H + D G Y C A N++G S L +P
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP 327
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
KV W R G+ I+ + + +H+L VR + D G+Y A ++
Sbjct: 38 KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSS 85
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSPHRPILQAGLPANASTVV 124
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVR 110
E +C VY++ ++W + +G+ G + V E L +R
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
++ D G Y C A N++G S L+ +P
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 37
+KEIE+LY R VT + AG Y C+A N+IG S
Sbjct: 175 DKEIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 205
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 67 SLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSRHRPILQAGLPANASTVV 122
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVR 110
E +C VY++ ++W + +G+ G + V E L +R
Sbjct: 123 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 182
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
++ D G Y C A N++G S L+ +P
Sbjct: 183 NVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 213
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 37
+KEIE+LY R VT + AG Y C+A N+IG S
Sbjct: 173 DKEIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 203
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL ++ V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSRHRPILQAGLPANASTVV 124
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVR 110
E +C VY++ ++W + +G+ G + V E L +R
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
++ D G Y C A N++G S L+ +P
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 37
+KEIE+LY R VT + AG Y C+A N+IG S
Sbjct: 175 DKEIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 205
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 159
+L + ++ DFG Y CQ SN+ GS + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSWPLTFGGGSKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 160 LV 161
+V
Sbjct: 132 VV 133
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNN 127
+ CNV+ +PP +V W ++ A+ ++ + + + + + D G Y N
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Query: 128 LGS 130
GS
Sbjct: 197 YGS 199
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139
KV W +G+AI R+ V+ E+ L + D G Y+ + + Q+ + LSG
Sbjct: 34 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQK 148
R S SL + ++ DFG Y CQ N G+ + + P + +F
Sbjct: 61 RFSGSGSGTHFSLKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLELKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS++L G +V
Sbjct: 121 SSKQLTSGGASVV 133
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 54 VEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI 112
+E QW+ AP E+ C + A P V W +D AI + D+ L++R
Sbjct: 15 LEDQWV--APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGA 70
Query: 113 KDTDFGNYMCQ 123
D G Y C+
Sbjct: 71 SLKDAGEYTCE 81
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
E++Y+ SL +T+K G+Y ++ T +V P + T +
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
+ + + + + A ++W + ++ L R M +S L + IK D G Y C+
Sbjct: 125 LDSVTLTCLSNDIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEI 182
Query: 125 SN 126
SN
Sbjct: 183 SN 184
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 89 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPN 142
A + R S ++SL + ++ DFG+Y CQ N+ G+ + + P
Sbjct: 55 AAGVPSRFSGSGSGTQYSLKINSLQSEDFGSYYCQHFWNIPFTFGSGTKLEIKRADAAPT 114
Query: 143 IPVFQKSSRRLGPDGYRLV 161
+ +F SS +L G +V
Sbjct: 115 VSIFPPSSEQLTSGGASVV 133
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
E++Y+ SL +T+K G+Y ++ T +V P + T +
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
+ + + + + A ++W + ++ L R M +S L + IK D G Y C+
Sbjct: 125 LDSVTLTCLSNDIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEI 182
Query: 125 SN 126
SN
Sbjct: 183 SN 184
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 25/151 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
SL + V G Y C+ N G S + + ++V+ E S + + A
Sbjct: 69 SLIXESVVPSDKGNYTCVVENEYG-SINHTYHLDVV---ERSPHRPILQAGLPANASTVV 124
Query: 68 ----EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVR 110
E +C VY++ ++W + +G+ G + V E L +R
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
++ D G Y C A N++G S L+ +P
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVLP 215
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 37
+KEIE+LY R VT + AG Y C+A N+IG S
Sbjct: 175 DKEIEVLYIR------NVTFEDAGEYTCLAGNSIGIS 205
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIV 44
+L L+ V + AG+Y C+ASN++G T+ NF V
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIV 44
+L L+ V + AG+Y C+ASN++G T+ NF V
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFRD---GTAITL---------GGRIDMHVSSEKHS 106
+H D + + CN + V+WFR G+ I+L GR+ SE+
Sbjct: 13 LHEGTD--SALRCN-FTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERAR 69
Query: 107 LLVRHIKDT---DFGNYMCQASNNLGSSQ 132
HI+D D G Y C A + GS Q
Sbjct: 70 YSTLHIRDAQLEDSGTYFCAAEASSGSWQ 98
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 106 SLLVRHIKDTDFGNYMCQASNN------LGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 159
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 160 LV 161
+V
Sbjct: 132 VV 133
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 106 SLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 159
+L + ++ DFG Y CQ SN G+ + + P + +F SS +L G
Sbjct: 72 TLSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 160 LV 161
+V
Sbjct: 132 VV 133
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 21/112 (18%)
Query: 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
+Q H +P + + + + P++ GT TL + ++
Sbjct: 37 QQKSHESPRLLIKYVSQSSSGIPSRFSGSGSGTDFTLS---------------INSVETE 81
Query: 116 DFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 161
DFG Y CQ SN+ G+ + + P + +F SS +L G +V
Sbjct: 82 DFGMYFCQQSNSWPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAIT-----------LGGRIDMHVSSEKHSLLVRHIK 113
M C V NP K+ WF+DG I+ L G +H ++
Sbjct: 23 MPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD------- 75
Query: 114 DTDFGNYMCQASNNLG 129
D GNY A+N G
Sbjct: 76 --DDGNYTIMAANPQG 89
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAIT-----------LGGRIDMHVSSEKHSLLVRHIK 113
M C V NP K+ WF+DG I+ L G +H ++
Sbjct: 24 MPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD------- 76
Query: 114 DTDFGNYMCQASNNLG 129
D GNY A+N G
Sbjct: 77 --DDGNYTIMAANPQG 90
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 213
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 148
R S +L + ++ DFG Y CQ SN+ G+ + + P + +F
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 148
R S +L + ++ DFG Y CQ SN+ G+ + + P + +F
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 148
R S +L + ++ DFG Y CQ SN+ G+ + + P + +F
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 159
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 73 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 132
Query: 160 LV 161
+V
Sbjct: 133 VV 134
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP-PEVSVEKQWIHTAPD 64
L+ SL L RV + G Y C S +S + + V Y P +++E P
Sbjct: 67 LVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNK-DLRPG 125
Query: 65 MRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH 111
I C+ Y P A+V W +DG + L G + + + L H
Sbjct: 126 NMVTITCSSYQGYPEAEVFW-KDGQGVPLTGNVTTSQMANERGLFDVH 172
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
+ P +++ + I NV + P A+V+W+ +G + +I +S +L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
+ D G Y +N G + + L
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATL 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYMCQASNNLG 129
C V P + W DG + M V HSL++ + D G Y C A+N G
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
Query: 130 SSQQFIQL 137
+ ++L
Sbjct: 91 QNSFSLEL 98
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGEST 38
SL ++ VT + AG+Y CIA+N G+++
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNS 93
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 148
R S ++SL + ++ DFGNY C N G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 44 VNVIYPPEVSV---EKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMH 99
+ V YPPEVS+ + W A + C+ +NP P W T G +
Sbjct: 211 LTVYYPPEVSISGYDNNWYLG--QNEATLTCDARSNPEPTGYNWS------TTMGPLPPF 262
Query: 100 VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
++ LL+R + +C +N LG+ Q
Sbjct: 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 44 VNVIYPPEVSV---EKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMH 99
+ V YPPEVS+ + W A + C+ +NP P W T G +
Sbjct: 211 LTVYYPPEVSISGYDNNWYLG--QNEATLTCDARSNPEPTGYNWS------TTMGPLPPF 262
Query: 100 VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
++ LL+R + +C +N LG+ Q
Sbjct: 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295
>pdb|1Q38|A Chain A, Anastellin
Length = 89
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
S I +Y+L++R + + W+ IP + SY I GL+ YE +++ ++
Sbjct: 10 SHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPGVVYEGQLISIQQY 61
Query: 228 G 228
G
Sbjct: 62 G 62
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNF 42
+L+LD+V + AG Y C+ASN G+ ++ F
Sbjct: 246 TLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S ++SL + ++ DFG+Y CQ + G++ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPFTFGTGTNLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 68 EIICNVYANPPAKVEWFRDG-------TAITLGGRID---MHVSSEKHS---LLVRHIKD 114
E+ C +P +++W+ +G + + G R+D +H + +H+ + + + +
Sbjct: 40 ELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99
Query: 115 TDFGNYMCQASNN 127
D G Y C+ASN+
Sbjct: 100 EDTGTYECRASND 112
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMR 66
R L + ++ AG+Y+C A++ G++ ++ + + EV V Q D
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGED-- 113
Query: 67 AEIICNVYANPPAKVEWFRDGTAIT 91
AE++C V ++P V W +T
Sbjct: 114 AEVVCRVSSSPAPAVSWLYHNEEVT 138
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 68 EIICNVYANPPAKVEWFRDG-------TAITLGGRID---MHVSSEKH---SLLVRHIKD 114
E+ C +P +++W+ +G + + G R+D +H + +H ++ + + +
Sbjct: 40 ELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99
Query: 115 TDFGNYMCQASNN 127
D G Y C+ASN+
Sbjct: 100 EDTGTYECRASND 112
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKS 149
R S + SL + ++ DFGNY CQ G+ + + P + +F S
Sbjct: 61 RFSGSGSGTQFSLKISSLQPEDFGNYYCQHHYGTRTFGGGTRLEIKRADAAPTVSIFPPS 120
Query: 150 SRRLGPDGYRLV 161
S +L G +V
Sbjct: 121 SEQLTSGGASVV 132
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 71 CNVYANPPAKVEWFRDGTAITLG-GRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL 128
C + A PP K+ W R+ + RI ++ ++ + +LL++ + D G Y A N
Sbjct: 37 CQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEA 96
Query: 129 G 129
G
Sbjct: 97 G 97
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFRD---GTAITL---------GGRIDMHVSSEKHS 106
+H D + + CN + V+WFR G+ I+L GR+ S++
Sbjct: 13 LHEGTD--SALRCN-FTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERR 69
Query: 107 LLVRHIKDT---DFGNYMCQASNNLGSSQ 132
HI+D D G Y C A + GS Q
Sbjct: 70 YSTLHIRDAQLEDSGTYFCAAEASSGSWQ 98
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
Length = 214
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQSEDFGSYYCQHFWGNPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRL 160
+L + ++ D Y C+ SNNL G+ + + P + +F SS +L G +
Sbjct: 78 TLTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 137
Query: 161 V 161
V
Sbjct: 138 V 138
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRL 160
+L + ++ D Y C+ SNNL G+ + + P + +F SS +L G +
Sbjct: 78 TLTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 137
Query: 161 V 161
V
Sbjct: 138 V 138
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRL 160
+L + ++ D Y C+ SNNL G+ + + P + +F SS +L G +
Sbjct: 78 TLTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 137
Query: 161 V 161
V
Sbjct: 138 V 138
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 101 SSEKHSLLVRHIKDTDFGNYMCQA--SN----NLGSSQQFIQLSGIPNIPVFQKSSRRLG 154
S ++L + ++ D G Y CQ SN G+ + + P + +F SS +LG
Sbjct: 73 SGTDYTLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTVSIFPPSSEQLG 132
Query: 155 PDGYRLVWQVDTY 167
LV V+ +
Sbjct: 133 TGSATLVCFVNNF 145
>pdb|1GHF|L Chain L, Anti-Anti-Idiotype Gh1002 Fab Fragment
Length = 211
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 66 RAEIICNVYANPPAKVEWFR---DGTA---ITLGGRIDMHVSSE--------KHSLLVRH 111
R I C + + W++ DGT I R+ V S +SL + +
Sbjct: 18 RVTISCRESQDISNSLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGTGTDYSLTISN 77
Query: 112 IKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 161
++ DF Y CQ N L G+ + + + +F SS +L G +V
Sbjct: 78 LEQEDFATYFCQQGNTLPYTFGGGTKLEIKRADAAQTVSIFPPSSEQLTSGGASVV 133
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGT-----------AITLGG---RIDMHVSSEK 104
+ +P R C + + W++ T + ++ G R S
Sbjct: 11 LSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTD 70
Query: 105 HSLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGY 158
+L + ++ D NY CQ SN G+ + + P + +F SS +L G
Sbjct: 71 FTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGA 130
Query: 159 RLV 161
+V
Sbjct: 131 SVV 133
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGT-----------AITLGG---RIDMHVSSEK 104
+ +P R C + + W++ T + ++ G R S
Sbjct: 11 LSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTD 70
Query: 105 HSLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGY 158
+L + ++ D NY CQ SN G+ + + P + +F SS +L G
Sbjct: 71 FTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGA 130
Query: 159 RLV 161
+V
Sbjct: 131 SVV 133
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLELKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S + SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPLTFGAGTKLELKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 163 QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVL 222
Q D + I++Y++K+R +++ W + + + LQ YE +
Sbjct: 31 QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN--------KDHIILEHLQWTMGYEVQIT 82
Query: 223 AKNRFGWSRPSKAYVFA 239
A NR G+S P+ Y F+
Sbjct: 83 AANRLGYSEPT-VYEFS 98
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 173 YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP 232
Y ++ +E+ P + I + D S S ++GL + T+YE SV A SRP
Sbjct: 32 YRVRVTPKEKTGPMKEINLAPDSS--------SVVVSGLMVATKYEVSVYALKDTLTSRP 83
Query: 233 SKAYVFATE 241
++ V E
Sbjct: 84 AQGVVTTLE 92
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 20/113 (17%)
Query: 69 IICNVYANPPAKVEWFRDG----------TAITLG----GRIDMHVSSEKHSLLVRHIKD 114
I C N + + W++ A TLG R S + SL + ++
Sbjct: 21 ITCRASKNIYSYLAWYQQKQGKSPQLLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLQP 80
Query: 115 TDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 161
DFG+Y CQ G+ + + P + +F SS +L G +V
Sbjct: 81 EDFGSYYCQHHYGTPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 173 YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP 232
Y ++ +E+ P + I + D S S ++GL + T+YE SV A SRP
Sbjct: 51 YRVRVTPKEKTGPMKEINLAPDSS--------SVVVSGLMVATKYEVSVYALKDTLTSRP 102
Query: 233 SKAYVFATE 241
++ V E
Sbjct: 103 AQGVVTTLE 111
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 156 DGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
D RL W + ++++++E E++ N+ +P +SY++TGL+ T
Sbjct: 16 DSLRLSWTAPD-AAFDSFMIQYQESEKVGEAINLTVPGS--------ERSYDLTGLKPGT 66
Query: 216 QYEASV 221
+Y S+
Sbjct: 67 EYTVSI 72
>pdb|2HMI|C Chain C, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1J5O|L Chain L, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 214
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG 154
S +SL + +++ DF Y CQ + G+ + + P + +F SS +L
Sbjct: 67 SGTDYSLTISNLEPEDFATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 155 PDGYRLV 161
G +V
Sbjct: 127 SGGASVV 133
>pdb|1HYS|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 214
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG 154
S +SL + +++ DF Y CQ + G+ + + P + +F SS +L
Sbjct: 67 SGTDYSLTISNLEPEDFATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 155 PDGYRLV 161
G +V
Sbjct: 127 SGGASVV 133
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 76 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
N A VEW + + G R + K L +R + D G Y C
Sbjct: 33 NSAAPVEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSC 79
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 20/131 (15%)
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD------------GTAITLG--GRI 96
+++ ++ +P I C + + W+R+ G+ + G R
Sbjct: 3 QITQSPSYLAASPGETITINCRASKSIRKFLAWYREKPGKTNKLLIYSGSTLQSGTPSRF 62
Query: 97 DMHVSSEKHSLLVRHIKDTDFGNYMCQASNN------LGSSQQFIQLSGIPNIPVFQKSS 150
S +L + ++ DF Y CQ N+ G+ + + P + +F SS
Sbjct: 63 SGSGSGTDFTLTISRLEPEDFAMYYCQQHNDYPLTFGAGTKLELKRADAAPTVSIFPPSS 122
Query: 151 RRLGPDGYRLV 161
+L G +V
Sbjct: 123 EQLTSGGASVV 133
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTS 39
+L+ VT++ G+Y C+ SN++G +T+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT---DFGNYMCQASNN 127
C+V P ++ W +G I S+ + + HI+D D G Y C A N
Sbjct: 33 CSVRGTPVPRITWLLNGQPIQYA------RSTCEAGVAELHIQDALPEDHGTYTCLAENA 86
Query: 128 LG 129
LG
Sbjct: 87 LG 88
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 205 SYNITGLQLFTQYEASVLAKNRFG 228
SY + GL+ FT+Y LA NR+G
Sbjct: 62 SYKLEGLKKFTEYSLRFLAYNRYG 85
>pdb|3O0R|L Chain L, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 213
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 87 GTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLS 138
G+ + G R S + +L + ++ DF Y CQ N G+ + +
Sbjct: 51 GSTLQFGIPSRFSGSGSGTEFTLTISSLEPEDFAMYYCQQHNEYPLTFGAGTKLELKRAD 110
Query: 139 GIPNIPVFQKSSRRLGPDGYRLV 161
P + +F SS +L G +V
Sbjct: 111 AAPTVSIFPPSSEQLTSGGASVV 133
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
VE + AP + C V A P ++ W +DG + L++ I
Sbjct: 15 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP---------LPPSPVLILPEIG 65
Query: 114 DTDFGNYMCQASNN 127
D G Y C A+++
Sbjct: 66 PQDQGTYSCVATHS 79
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 AITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQA 124
I++GGR D V S+ SL + ++ D G Y CQA
Sbjct: 48 TISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
VE + AP + C V A P ++ W +DG + L++ I
Sbjct: 8 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP---------LPPSPVLILPEIG 58
Query: 114 DTDFGNYMCQASNNLGSSQQ 133
D G Y C A+++ Q+
Sbjct: 59 PQDQGTYSCVATHSSHGPQE 78
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
R + C + P A+V W +DG + + + L++ ++ D G Y+C+
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID 88
Query: 126 NNLGS 130
+ S
Sbjct: 89 DESAS 93
>pdb|3VG9|B Chain B, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|B Chain B, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 214
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S + SL + ++ DFG Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINRLQPEDFGTYYCQHFYGSTWAFGGGTKLEIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-------SNNLGSSQQFIQLSGIPNIPVFQ 147
R S + SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGSPPWTFGGGTKLEIKRADAAPTVSIFP 120
Query: 148 KSSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 PSSEQLTSGGASVV 134
>pdb|1P2C|A Chain A, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|D Chain D, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|2Q76|A Chain A, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|C Chain C, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 212
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 148
R S +L + ++ DFG Y CQ S + G+ + P + +F
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGVYFCQQSGSWPRTFGGGTKLDIKRADAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 201 IYTQSYNITGLQLFTQYEASVLAKNRFG 228
+ + SY I GL+ +T+Y V+A N+ G
Sbjct: 68 VSSHSYTINGLKKYTEYSFRVVAYNKHG 95
>pdb|3CXD|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With Its Epitope Peptide
pdb|3DSF|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With W43a Mutated Epitope Peptide
Length = 213
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 148
R S + SL + ++ DFG Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINSLQSEDFGTYYCQHFWGTPFTFGSGTKLEIKRSDAAPTVSIFPP 120
Query: 149 SSRRLGPDGYRLV 161
S+ +L G +V
Sbjct: 121 SAAQLSSGGGSVV 133
>pdb|3R06|A Chain A, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|C Chain C, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|E Chain E, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|L Chain L, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R08|L Chain L, Crystal Structure Of Mouse Cd3epsilon In Complex With
Antibody 2c11 Fab
Length = 213
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 72 NVYANPPAKVE----WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
N Y P K ++ + A + R S S + ++ D G+Y CQ N
Sbjct: 34 NWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYN 93
Query: 128 L------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY 167
G+ + + P + +F SS +LG LV V+ +
Sbjct: 94 YPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNF 139
>pdb|1KNO|A Chain A, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|C Chain C, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|E Chain E, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 214
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 66 RAEIICNVYANPPAKVEWFR---DGT-------AITLGG----RIDMHVSSEKHSLLVRH 111
R + C + W + DGT A TL R S +SL +
Sbjct: 18 RVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISS 77
Query: 112 IKDTDFGNYMC--QASN----NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 161
++ DF +Y C AS+ G+ + ++ P + +F SS +L G +V
Sbjct: 78 LESEDFADYYCLQYASSPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 204 QSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
+ Y TGL+ + Y + A+ R GW ++A V TE
Sbjct: 85 RQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 122
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 26 YQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEI-ICNVY-ANPPAK 80
Y C+ + +NV PE VS K + D EI CN NP K
Sbjct: 92 YVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPK 151
Query: 81 VEWFRDG 87
+ W+R+G
Sbjct: 152 ITWYRNG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,505,398
Number of Sequences: 62578
Number of extensions: 312993
Number of successful extensions: 1423
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 294
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)