Query psy12131
Match_columns 245
No_of_seqs 177 out of 1886
Neff 11.8
Searched_HMMs 46136
Date Fri Aug 16 19:31:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.6E-31 3.4E-36 216.9 24.6 237 1-245 470-716 (1051)
2 KOG3513|consensus 100.0 6.6E-28 1.4E-32 196.1 24.0 224 2-242 285-517 (1051)
3 KOG4221|consensus 99.9 1.7E-26 3.7E-31 188.0 16.5 228 3-244 284-523 (1381)
4 KOG4221|consensus 99.9 6.7E-23 1.4E-27 167.4 18.4 226 1-242 184-419 (1381)
5 KOG4194|consensus 99.9 1.7E-22 3.6E-27 155.1 16.4 156 11-168 574-734 (873)
6 PHA02785 IL-beta-binding prote 99.9 1.7E-19 3.6E-24 135.8 24.5 217 8-230 79-318 (326)
7 KOG4222|consensus 99.8 8.8E-20 1.9E-24 148.7 14.3 221 10-239 186-411 (1281)
8 PHA02826 IL-1 receptor-like pr 99.8 9.9E-18 2.1E-22 119.0 14.4 110 10-128 97-211 (227)
9 cd05762 Ig8_MLCK Eighth immuno 99.8 3.1E-17 6.8E-22 101.6 12.9 95 50-144 1-97 (98)
10 KOG4222|consensus 99.8 4E-18 8.7E-23 139.2 9.9 229 2-243 368-624 (1281)
11 PHA02785 IL-beta-binding prote 99.7 3.5E-16 7.7E-21 117.9 17.8 127 3-131 170-318 (326)
12 KOG4194|consensus 99.7 4.7E-17 1E-21 125.6 11.6 142 2-146 660-802 (873)
13 cd05747 Ig5_Titin_like M5, fif 99.7 4.3E-16 9.4E-21 95.8 12.4 89 49-137 3-91 (92)
14 cd05851 Ig3_Contactin-1 Third 99.7 3.1E-16 6.7E-21 95.3 11.0 87 49-139 1-87 (88)
15 PF07679 I-set: Immunoglobulin 99.7 1.5E-15 3.2E-20 93.3 13.9 90 50-139 1-90 (90)
16 cd05737 Ig_Myomesin_like_C C-t 99.7 1.9E-15 4.2E-20 92.8 12.6 84 56-139 8-92 (92)
17 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 3.2E-15 7E-20 90.3 13.0 82 58-139 4-86 (86)
18 cd05771 IgC_Tapasin_R Tapasin- 99.7 5.8E-15 1.2E-19 98.0 14.9 117 11-128 1-131 (139)
19 cd04972 Ig_TrkABC_d4 Fourth do 99.7 1E-14 2.2E-19 89.3 12.6 83 56-138 7-89 (90)
20 cd05745 Ig3_Peroxidasin Third 99.6 2.9E-15 6.3E-20 88.1 9.7 74 63-139 1-74 (74)
21 cd04975 Ig4_SCFR_like Fourth i 99.6 6.7E-15 1.5E-19 91.3 11.3 83 57-139 11-99 (101)
22 cd05748 Ig_Titin_like Immunogl 99.6 1E-14 2.2E-19 85.9 11.5 74 66-139 1-74 (74)
23 cd05852 Ig5_Contactin-1 Fifth 99.6 5.3E-15 1.1E-19 86.3 9.9 73 64-139 1-73 (73)
24 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.9E-14 4E-19 89.3 12.5 91 49-139 2-97 (97)
25 cd05892 Ig_Myotilin_C C-termin 99.6 1E-14 2.2E-19 85.4 10.5 73 67-139 1-75 (75)
26 cd05730 Ig3_NCAM-1_like Third 99.6 2.2E-14 4.8E-19 88.8 11.3 81 58-140 12-93 (95)
27 cd04968 Ig3_Contactin_like Thi 99.6 3.2E-14 6.9E-19 86.7 11.8 86 50-139 2-87 (88)
28 cd05728 Ig4_Contactin-2-like F 99.6 1.6E-14 3.5E-19 87.3 10.4 82 54-139 4-85 (85)
29 cd05891 Ig_M-protein_C C-termi 99.6 5.7E-14 1.2E-18 86.1 12.3 84 56-139 8-92 (92)
30 cd05866 Ig1_NCAM-2 First immun 99.6 8.1E-14 1.8E-18 84.9 12.7 84 54-138 5-90 (92)
31 cd05723 Ig4_Neogenin Fourth im 99.6 4.3E-14 9.4E-19 82.3 10.8 71 66-139 1-71 (71)
32 cd05865 Ig1_NCAM-1 First immun 99.6 7.4E-14 1.6E-18 85.9 12.0 85 55-139 6-95 (96)
33 cd05743 Ig_Perlecan_D2_like Im 99.6 4.7E-14 1E-18 83.8 10.8 72 64-135 1-72 (78)
34 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.1E-14 4.6E-19 81.7 8.8 65 67-139 1-65 (67)
35 cd05870 Ig5_NCAM-2 Fifth immun 99.6 7.9E-14 1.7E-18 86.7 12.2 89 49-138 2-97 (98)
36 cd05893 Ig_Palladin_C C-termin 99.6 4.8E-14 1.1E-18 82.6 10.5 73 67-139 1-75 (75)
37 cd05732 Ig5_NCAM-1_like Fifth 99.6 7.7E-14 1.7E-18 86.6 11.7 89 49-138 2-95 (96)
38 cd04969 Ig5_Contactin_like Fif 99.6 5.2E-14 1.1E-18 82.5 10.1 73 64-139 1-73 (73)
39 cd05735 Ig8_DSCAM Eight immuno 99.6 1.3E-13 2.8E-18 83.7 11.8 77 64-140 1-82 (88)
40 cd05773 Ig8_hNephrin_like Eigh 99.6 1.4E-13 3E-18 87.1 12.4 95 47-141 2-106 (109)
41 cd05859 Ig4_PDGFR-alpha Fourth 99.6 7.9E-14 1.7E-18 86.6 11.0 82 58-139 12-99 (101)
42 cd05857 Ig2_FGFR Second immuno 99.6 1.5E-13 3.2E-18 83.3 11.9 82 58-139 3-85 (85)
43 cd05868 Ig4_NrCAM Fourth immun 99.6 7.7E-14 1.7E-18 82.3 10.1 74 64-139 1-75 (76)
44 cd05744 Ig_Myotilin_C_like Imm 99.6 1.3E-13 2.8E-18 81.1 10.7 72 67-138 1-74 (75)
45 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.2E-13 2.6E-18 81.6 10.6 72 64-139 1-75 (76)
46 cd05746 Ig4_Peroxidasin Fourth 99.5 5.6E-14 1.2E-18 81.4 8.4 68 67-137 1-68 (69)
47 cd07693 Ig1_Robo First immunog 99.5 2.9E-13 6.2E-18 84.8 12.3 91 49-139 1-99 (100)
48 cd04976 Ig2_VEGFR Second immun 99.5 9.1E-14 2E-18 80.8 8.9 69 67-139 1-69 (71)
49 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.5E-13 3.2E-18 81.5 10.0 75 64-139 1-75 (76)
50 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.9E-13 4.2E-18 81.3 9.9 70 69-138 3-79 (81)
51 cd05876 Ig3_L1-CAM Third immun 99.5 1.4E-13 3E-18 80.2 8.8 70 67-139 1-70 (71)
52 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 3.4E-13 7.4E-18 77.8 10.2 68 64-137 1-68 (69)
53 cd05855 Ig_TrkB_d5 Fifth domai 99.5 2.4E-13 5.1E-18 79.9 9.6 70 69-138 3-77 (79)
54 cd05854 Ig6_Contactin-2 Sixth 99.5 6.8E-13 1.5E-17 79.9 11.2 77 65-141 1-83 (85)
55 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.1E-13 4.5E-18 78.6 8.5 67 67-138 1-67 (70)
56 cd05848 Ig1_Contactin-5 First 99.5 1.2E-12 2.5E-17 80.6 11.9 82 50-133 2-87 (94)
57 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.1E-12 2.4E-17 81.5 11.8 88 49-137 2-97 (98)
58 cd05736 Ig2_Follistatin_like S 99.5 4.7E-13 1E-17 79.2 9.4 74 67-140 1-74 (76)
59 cd04973 Ig1_FGFR First immunog 99.5 5.2E-13 1.1E-17 79.4 9.4 77 57-138 2-78 (79)
60 cd05764 Ig_2 Subgroup of the i 99.5 9.9E-13 2.1E-17 77.4 10.4 73 64-139 1-74 (74)
61 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1.1E-12 2.3E-17 80.1 10.7 78 57-138 11-89 (91)
62 PHA02826 IL-1 receptor-like pr 99.5 4.7E-12 1E-16 90.2 15.5 156 57-227 30-211 (227)
63 cd04977 Ig1_NCAM-1_like First 99.5 3.2E-12 6.9E-17 78.3 12.3 84 54-138 5-91 (92)
64 cd05760 Ig2_PTK7 Second immuno 99.5 1.3E-12 2.9E-17 77.3 10.3 71 67-139 1-74 (77)
65 cd05763 Ig_1 Subgroup of the i 99.5 7.1E-13 1.5E-17 78.2 8.6 71 67-139 1-74 (75)
66 cd04970 Ig6_Contactin_like Six 99.5 1.9E-12 4.1E-17 78.3 10.5 77 65-141 1-83 (85)
67 cd05856 Ig2_FGFRL1-like Second 99.5 1.7E-12 3.8E-17 78.1 10.1 78 59-138 4-81 (82)
68 cd05731 Ig3_L1-CAM_like Third 99.4 1.2E-12 2.6E-17 76.4 8.9 70 67-139 1-70 (71)
69 cd05850 Ig1_Contactin-2 First 99.4 6.7E-12 1.4E-16 77.2 12.4 80 50-133 2-87 (94)
70 cd05725 Ig3_Robo Third immunog 99.4 1.1E-12 2.5E-17 75.9 8.3 68 67-138 1-68 (69)
71 cd05858 Ig3_FGFR-2 Third immun 99.4 2E-12 4.4E-17 79.0 9.7 76 64-139 1-89 (90)
72 cd05849 Ig1_Contactin-1 First 99.4 4.4E-12 9.5E-17 77.7 11.1 80 50-133 2-86 (93)
73 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2.2E-12 4.7E-17 75.8 9.3 69 67-138 1-72 (74)
74 cd05750 Ig_Pro_neuregulin Immu 99.4 1.5E-12 3.2E-17 76.9 8.7 70 67-136 1-74 (75)
75 cd05726 Ig4_Robo Fhird immunog 99.4 2E-12 4.4E-17 79.0 9.3 74 64-140 1-82 (90)
76 cd05749 Ig2_Tyro3_like Second 99.4 2.5E-12 5.4E-17 76.4 9.1 71 55-133 4-75 (81)
77 cd05853 Ig6_Contactin-4 Sixth 99.4 3.2E-12 7E-17 76.2 9.5 76 65-140 1-82 (85)
78 cd05724 Ig2_Robo Second immuno 99.4 4.7E-12 1E-16 76.9 10.5 74 56-132 3-78 (86)
79 cd05722 Ig1_Neogenin First imm 99.4 6.4E-12 1.4E-16 77.7 10.8 81 55-138 5-94 (95)
80 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.6E-11 3.5E-16 75.2 11.7 88 49-137 2-97 (98)
81 cd05874 Ig6_NrCAM Sixth immuno 99.4 4E-12 8.7E-17 75.0 8.8 67 67-133 1-71 (77)
82 cd04974 Ig3_FGFR Third immunog 99.4 4.4E-12 9.6E-17 77.4 9.2 76 64-139 1-89 (90)
83 cd05733 Ig6_L1-CAM_like Sixth 99.4 2.5E-12 5.4E-17 76.1 7.5 67 67-133 1-71 (77)
84 cd07702 Ig2_VEGFR-1 Second imm 99.4 4.9E-12 1.1E-16 73.0 8.4 65 67-135 1-66 (72)
85 cd05765 Ig_3 Subgroup of the i 99.4 5E-12 1.1E-16 75.8 8.8 76 64-139 1-81 (81)
86 cd05756 Ig1_IL1R_like First im 99.4 4.3E-12 9.4E-17 77.8 7.9 79 58-138 8-93 (94)
87 cd05875 Ig6_hNeurofascin_like 99.4 8.6E-12 1.9E-16 73.6 8.7 65 67-133 1-71 (77)
88 cd05752 Ig1_FcgammaR_like Frst 99.3 1.4E-11 3.1E-16 72.6 8.3 67 50-127 1-68 (78)
89 cd05729 Ig2_FGFR_like Second i 99.3 1E-10 2.3E-15 70.7 12.0 80 59-138 4-84 (85)
90 cd05895 Ig_Pro_neuregulin-1 Im 99.3 3.1E-11 6.7E-16 71.3 9.1 70 67-136 1-75 (76)
91 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 7.1E-11 1.5E-15 71.0 10.0 77 64-140 1-83 (84)
92 cd04967 Ig1_Contactin First Ig 99.3 1.2E-10 2.5E-15 71.4 11.1 80 50-133 2-87 (91)
93 cd05742 Ig1_VEGFR_like First i 99.3 4.1E-11 8.9E-16 72.2 8.9 76 64-139 1-83 (84)
94 cd05734 Ig7_DSCAM Seventh immu 99.3 5E-11 1.1E-15 71.0 8.8 68 67-137 1-77 (79)
95 cd05754 Ig3_Perlecan_like Thir 99.3 7E-11 1.5E-15 71.4 8.8 76 56-137 8-84 (85)
96 cd05873 Ig_Sema4D_like Immunog 99.2 2.6E-10 5.5E-15 68.3 9.3 68 56-128 3-71 (87)
97 cd07701 Ig1_Necl-3 First (N-te 99.2 4.6E-10 1E-14 69.0 10.6 72 57-128 5-85 (95)
98 cd05757 Ig2_IL1R_like Second i 99.2 2.7E-10 5.9E-15 69.4 8.3 74 59-136 5-83 (92)
99 cd05882 Ig1_Necl-1 First (N-te 99.2 1.8E-09 3.9E-14 66.2 11.8 69 58-126 6-83 (95)
100 cd04979 Ig_Semaphorin_C Immuno 99.2 3.3E-10 7.2E-15 69.1 8.1 80 56-140 3-87 (89)
101 smart00410 IG_like Immunoglobu 99.1 5.4E-09 1.2E-13 63.0 12.6 82 58-139 3-85 (86)
102 smart00409 IG Immunoglobulin. 99.1 5.4E-09 1.2E-13 63.0 12.6 82 58-139 3-85 (86)
103 cd05753 Ig2_FcgammaR_like Seco 99.1 1.2E-09 2.5E-14 65.5 8.3 64 59-130 9-73 (83)
104 cd05727 Ig2_Contactin-2-like S 99.1 3.8E-10 8.2E-15 68.6 6.0 72 58-131 12-86 (96)
105 cd05853 Ig6_Contactin-4 Sixth 99.1 4.6E-10 1E-14 67.0 5.8 41 9-50 45-85 (85)
106 PF13895 Ig_2: Immunoglobulin 99.1 4.3E-09 9.2E-14 62.8 10.0 77 50-138 2-79 (80)
107 smart00408 IGc2 Immunoglobulin 99.1 1.5E-09 3.2E-14 61.4 7.5 63 63-129 1-63 (63)
108 cd07690 Ig1_CD4 First immunogl 99.0 3E-09 6.5E-14 64.8 8.6 73 59-131 2-91 (94)
109 cd05854 Ig6_Contactin-2 Sixth 99.0 1.1E-09 2.4E-14 65.9 6.2 41 9-50 45-85 (85)
110 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.1E-08 2.5E-13 63.1 10.3 80 57-137 5-93 (95)
111 cd05845 Ig2_L1-CAM_like Second 99.0 3E-09 6.6E-14 64.6 6.7 70 57-129 11-83 (95)
112 cd05860 Ig4_SCFR Fourth immuno 99.0 2.6E-08 5.7E-13 60.7 10.7 83 57-139 11-99 (101)
113 PF00041 fn3: Fibronectin type 99.0 4.5E-09 9.7E-14 63.5 7.5 73 153-233 11-85 (85)
114 cd05871 Ig_Semaphorin_classIII 98.9 1.8E-08 3.8E-13 61.4 9.5 78 58-140 5-89 (91)
115 cd05862 Ig1_VEGFR First immuno 98.9 1.6E-08 3.5E-13 61.0 8.8 76 64-139 1-84 (86)
116 PF00047 ig: Immunoglobulin do 98.9 7.6E-09 1.7E-13 58.8 7.0 61 64-124 1-64 (64)
117 cd04970 Ig6_Contactin_like Six 98.9 3.3E-09 7.2E-14 64.0 5.2 41 9-50 45-85 (85)
118 KOG0196|consensus 98.9 6.5E-08 1.4E-12 78.5 13.4 130 104-243 397-537 (996)
119 cd05881 Ig1_Necl-2 First (N-te 98.9 9.5E-08 2.1E-12 58.3 11.2 72 57-128 5-85 (95)
120 cd05740 Ig_CEACAM_D4 Fourth im 98.9 7.8E-09 1.7E-13 63.0 6.1 45 2-46 46-90 (91)
121 cd05892 Ig_Myotilin_C C-termin 98.9 9.4E-09 2E-13 60.1 6.0 44 2-46 29-75 (75)
122 cd05852 Ig5_Contactin-1 Fifth 98.9 5.9E-09 1.3E-13 60.7 5.1 43 2-46 31-73 (73)
123 cd05872 Ig_Sema4B_like Immunog 98.8 5.4E-08 1.2E-12 57.9 8.7 63 58-125 5-67 (85)
124 cd05771 IgC_Tapasin_R Tapasin- 98.8 2.7E-07 5.8E-12 61.3 13.1 64 106-169 2-67 (139)
125 PF13927 Ig_3: Immunoglobulin 98.8 1.6E-08 3.4E-13 59.4 6.5 74 49-126 1-75 (75)
126 cd05897 Ig2_IL1R2_like Second 98.8 2.9E-08 6.4E-13 60.4 7.6 71 60-131 6-81 (95)
127 cd05763 Ig_1 Subgroup of the i 98.8 1.9E-08 4.1E-13 59.1 6.4 44 2-46 31-74 (75)
128 cd05866 Ig1_NCAM-2 First immun 98.8 2E-08 4.3E-13 61.2 6.5 45 2-46 45-91 (92)
129 cd05893 Ig_Palladin_C C-termin 98.8 2.2E-08 4.7E-13 58.7 5.6 44 2-46 29-75 (75)
130 cd05865 Ig1_NCAM-1 First immun 98.8 3.8E-08 8.2E-13 60.6 6.8 44 3-46 49-95 (96)
131 cd05863 Ig2_VEGFR-3 Second imm 98.8 1.9E-08 4.1E-13 57.2 4.6 37 9-46 29-65 (67)
132 cd05759 Ig2_KIRREL3-like Secon 98.7 2E-07 4.3E-12 55.8 9.0 63 67-129 2-70 (82)
133 PHA03376 BARF1; Provisional 98.7 7.3E-07 1.6E-11 59.9 12.3 83 3-86 77-161 (221)
134 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 1.7E-07 3.7E-12 57.4 8.6 79 58-138 9-103 (104)
135 cd05734 Ig7_DSCAM Seventh immu 98.7 3.9E-08 8.5E-13 58.4 5.8 44 2-46 36-79 (79)
136 cd04983 IgV_TCR_alpha_like Imm 98.7 1.6E-07 3.6E-12 59.5 8.9 74 55-128 4-93 (109)
137 cd05726 Ig4_Robo Fhird immunog 98.7 5E-08 1.1E-12 59.5 6.0 45 3-49 40-84 (90)
138 cd05744 Ig_Myotilin_C_like Imm 98.7 7.6E-08 1.6E-12 56.5 6.3 44 2-46 29-75 (75)
139 cd05725 Ig3_Robo Third immunog 98.7 6.4E-08 1.4E-12 55.8 5.9 42 3-46 28-69 (69)
140 cd05876 Ig3_L1-CAM Third immun 98.7 6.7E-08 1.5E-12 56.1 6.0 40 6-46 31-70 (71)
141 cd05885 Ig2_Necl-4 Second immu 98.7 1.7E-07 3.7E-12 55.0 7.6 63 67-131 2-69 (80)
142 cd05730 Ig3_NCAM-1_like Third 98.7 7.6E-08 1.6E-12 59.4 6.6 46 2-48 49-94 (95)
143 cd05870 Ig5_NCAM-2 Fifth immun 98.7 5.6E-08 1.2E-12 60.3 6.0 44 2-46 53-98 (98)
144 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 4.8E-08 1E-12 57.2 5.3 44 2-46 30-73 (74)
145 cd05762 Ig8_MLCK Eighth immuno 98.7 3.2E-07 7E-12 56.8 9.3 85 151-245 11-97 (98)
146 cd04969 Ig5_Contactin_like Fif 98.7 4.5E-08 9.8E-13 57.2 4.9 43 2-46 31-73 (73)
147 cd05731 Ig3_L1-CAM_like Third 98.7 5.4E-08 1.2E-12 56.5 5.3 42 4-46 29-70 (71)
148 cd05723 Ig4_Neogenin Fourth im 98.7 9.6E-08 2.1E-12 55.4 6.2 43 2-46 29-71 (71)
149 cd05760 Ig2_PTK7 Second immuno 98.7 9.4E-08 2E-12 56.4 6.2 45 3-47 30-75 (77)
150 cd04977 Ig1_NCAM-1_like First 98.7 8.9E-08 1.9E-12 58.6 6.3 36 11-46 57-92 (92)
151 cd05894 Ig_C5_MyBP-C C5 immuno 98.7 1E-07 2.2E-12 57.5 6.4 44 2-46 41-86 (86)
152 cd05735 Ig8_DSCAM Eight immuno 98.7 5.6E-07 1.2E-11 54.5 9.6 85 155-245 1-88 (88)
153 cd05751 Ig1_LILRB1_like First 98.7 1.8E-07 3.8E-12 57.2 7.3 74 49-127 2-75 (91)
154 cd05736 Ig2_Follistatin_like S 98.7 1.4E-07 3E-12 55.6 6.7 44 3-47 31-74 (76)
155 cd05745 Ig3_Peroxidasin Third 98.7 6.5E-08 1.4E-12 56.7 5.0 42 3-46 33-74 (74)
156 cd05748 Ig_Titin_like Immunogl 98.6 8.1E-08 1.8E-12 56.3 5.3 43 3-46 30-74 (74)
157 cd05900 Ig_Aggrecan Immunoglob 98.6 7.6E-07 1.7E-11 56.2 9.3 77 63-139 1-108 (112)
158 cd05713 Ig_MOG_like Immunoglob 98.6 1.2E-06 2.6E-11 54.6 10.0 76 64-139 1-99 (100)
159 cd05899 IgV_TCR_beta Immunoglo 98.6 5.4E-07 1.2E-11 57.2 8.4 74 54-128 3-95 (110)
160 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.6E-06 3.5E-11 54.6 10.3 78 63-140 1-103 (106)
161 cd05869 Ig5_NCAM-1 Fifth immun 98.6 2.2E-07 4.7E-12 57.6 6.2 35 11-46 63-97 (97)
162 cd05851 Ig3_Contactin-1 Third 98.6 2.3E-07 4.9E-12 56.3 6.0 39 8-47 50-88 (88)
163 cd05746 Ig4_Peroxidasin Fourth 98.6 1.4E-07 2.9E-12 54.4 4.7 40 3-44 29-68 (69)
164 cd04975 Ig4_SCFR_like Fourth i 98.6 2.9E-07 6.3E-12 57.2 6.3 37 10-47 64-100 (101)
165 cd05775 Ig_SLAM-CD84_like_N N- 98.6 1.8E-07 3.9E-12 57.8 5.3 45 2-46 52-96 (97)
166 cd00099 IgV Immunoglobulin var 98.5 6.5E-07 1.4E-11 56.3 7.8 70 60-129 2-91 (105)
167 cd04980 IgV_L_kappa Immunoglob 98.5 9.8E-07 2.1E-11 55.6 8.5 75 53-127 4-93 (106)
168 cd05877 Ig_LP_like Immunoglobu 98.5 1.6E-06 3.5E-11 54.6 9.5 78 63-140 1-103 (106)
169 cd05724 Ig2_Robo Second immuno 98.5 2.8E-07 6.1E-12 55.7 5.7 43 3-46 44-86 (86)
170 cd04974 Ig3_FGFR Third immunog 98.5 1.5E-07 3.2E-12 57.4 4.3 35 11-46 55-89 (90)
171 cd04976 Ig2_VEGFR Second immun 98.5 3.1E-07 6.7E-12 53.2 5.4 37 9-46 33-69 (71)
172 cd04982 IgV_TCR_gamma Immunogl 98.5 9.4E-07 2E-11 56.7 8.2 72 55-126 4-98 (116)
173 cd05864 Ig2_VEGFR-2 Second imm 98.5 1.9E-07 4.1E-12 53.8 4.1 36 10-45 33-69 (70)
174 cd05867 Ig4_L1-CAM_like Fourth 98.5 5.8E-07 1.3E-11 52.9 6.1 36 10-46 40-75 (76)
175 KOG3515|consensus 98.5 1.3E-06 2.7E-11 71.5 9.7 226 10-241 162-398 (741)
176 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.3E-06 2.8E-11 53.6 7.6 75 50-126 2-76 (94)
177 cd05756 Ig1_IL1R_like First im 98.5 4.7E-07 1E-11 55.5 5.6 37 9-46 58-94 (94)
178 cd05765 Ig_3 Subgroup of the i 98.5 3.8E-07 8.3E-12 54.4 5.1 36 10-46 46-81 (81)
179 cd05764 Ig_2 Subgroup of the i 98.5 4.8E-07 1E-11 52.9 5.4 36 10-46 39-74 (74)
180 cd05774 Ig_CEACAM_D1 First imm 98.5 3E-06 6.5E-11 52.9 9.2 76 60-138 9-104 (105)
181 cd05732 Ig5_NCAM-1_like Fifth 98.5 5.6E-07 1.2E-11 55.6 5.9 35 11-46 62-96 (96)
182 cd05859 Ig4_PDGFR-alpha Fourth 98.5 3.9E-07 8.4E-12 56.7 5.1 37 10-47 64-100 (101)
183 cd04978 Ig4_L1-NrCAM_like Four 98.5 5.8E-07 1.3E-11 52.9 5.7 39 7-46 37-75 (76)
184 cd05718 Ig1_PVR_like First imm 98.5 3.7E-06 8E-11 52.1 9.5 75 65-139 1-97 (98)
185 cd05737 Ig_Myomesin_like_C C-t 98.5 6.2E-07 1.3E-11 54.9 5.7 35 11-46 58-92 (92)
186 cd05741 Ig_CEACAM_D1_like Firs 98.5 5.6E-07 1.2E-11 55.1 5.6 44 2-46 49-92 (92)
187 cd05858 Ig3_FGFR-2 Third immun 98.5 2.4E-07 5.2E-12 56.5 3.9 35 11-46 55-89 (90)
188 cd04973 Ig1_FGFR First immunog 98.4 6E-07 1.3E-11 53.2 5.3 40 3-45 39-78 (79)
189 cd05886 Ig1_Nectin-1_like Firs 98.4 9.8E-07 2.1E-11 54.5 6.3 45 2-47 51-99 (99)
190 cd05857 Ig2_FGFR Second immuno 98.4 7E-07 1.5E-11 53.8 5.5 38 8-46 48-85 (85)
191 cd05774 Ig_CEACAM_D1 First imm 98.4 8.5E-07 1.8E-11 55.3 5.9 44 2-46 62-105 (105)
192 cd05879 Ig_P0 Immunoglobulin ( 98.4 8E-06 1.7E-10 52.0 10.5 73 57-129 6-104 (116)
193 cd05742 Ig1_VEGFR_like First i 98.4 6E-07 1.3E-11 54.0 5.1 36 10-46 48-83 (84)
194 cd05878 Ig_Aggrecan_like Immun 98.4 5.1E-06 1.1E-10 52.6 9.5 78 63-140 1-107 (110)
195 cd05868 Ig4_NrCAM Fourth immun 98.4 9.3E-07 2E-11 52.0 5.8 37 9-46 39-75 (76)
196 cd04968 Ig3_Contactin_like Thi 98.4 1.3E-06 2.8E-11 53.0 6.5 37 9-46 51-87 (88)
197 KOG3515|consensus 98.4 5.7E-06 1.2E-10 67.9 11.9 231 3-243 450-693 (741)
198 cd05855 Ig_TrkB_d5 Fifth domai 98.4 6.2E-07 1.3E-11 52.8 4.8 35 10-45 43-77 (79)
199 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 8.2E-07 1.8E-11 53.3 5.4 38 10-47 45-83 (84)
200 cd04971 Ig_TrKABC_d5 Fifth dom 98.4 6.6E-07 1.4E-11 53.2 4.9 34 11-45 46-79 (81)
201 cd05900 Ig_Aggrecan Immunoglob 98.4 1.1E-06 2.4E-11 55.5 6.2 45 2-47 60-109 (112)
202 cd05888 Ig1_Nectin-4_like Frst 98.4 1.4E-06 2.9E-11 54.2 6.4 44 2-46 51-99 (100)
203 cd05773 Ig8_hNephrin_like Eigh 98.4 8.5E-07 1.8E-11 56.1 5.5 40 11-51 69-109 (109)
204 cd05895 Ig_Pro_neuregulin-1 Im 98.4 1.1E-06 2.4E-11 51.7 5.5 32 10-42 43-74 (76)
205 cd05856 Ig2_FGFRL1-like Second 98.4 6.9E-07 1.5E-11 53.4 4.8 36 10-46 47-82 (82)
206 cd05753 Ig2_FcgammaR_like Seco 98.4 3.1E-07 6.7E-12 54.9 3.1 38 9-46 46-83 (83)
207 PF07679 I-set: Immunoglobulin 98.4 6.1E-07 1.3E-11 54.7 4.5 37 9-46 54-90 (90)
208 cd04984 IgV_L_lambda Immunoglo 98.4 3.5E-06 7.6E-11 52.2 7.8 67 60-126 2-84 (98)
209 cd05733 Ig6_L1-CAM_like Sixth 98.4 1.5E-06 3.2E-11 51.3 5.6 42 3-44 31-76 (77)
210 cd05887 Ig1_Nectin-3_like Firs 98.4 2.1E-06 4.6E-11 52.5 6.3 45 2-46 48-95 (96)
211 cd05875 Ig6_hNeurofascin_like 98.3 1.9E-06 4.2E-11 50.7 5.8 43 2-44 30-76 (77)
212 cd05880 Ig_EVA1 Immunoglobulin 98.3 1.2E-05 2.6E-10 51.4 9.8 74 56-129 5-103 (115)
213 cd05713 Ig_MOG_like Immunoglob 98.3 1.6E-06 3.4E-11 54.0 5.7 44 2-46 51-99 (100)
214 cd05902 Ig_Neurocan Immunoglob 98.3 1.3E-06 2.9E-11 54.9 5.3 45 2-47 58-107 (110)
215 cd05862 Ig1_VEGFR First immuno 98.3 1.1E-06 2.3E-11 53.0 4.6 37 10-47 49-85 (86)
216 cd05747 Ig5_Titin_like M5, fif 98.3 2.4E-06 5.1E-11 52.3 6.2 41 3-44 49-91 (92)
217 PHA03376 BARF1; Provisional 98.3 2.8E-05 6E-10 52.6 11.4 74 58-131 20-113 (221)
218 cd05728 Ig4_Contactin-2-like F 98.3 1.8E-06 3.9E-11 52.0 5.4 36 10-46 50-85 (85)
219 PF07686 V-set: Immunoglobulin 98.3 2.8E-05 6.1E-10 49.5 11.3 74 54-127 6-101 (114)
220 cd05718 Ig1_PVR_like First imm 98.3 3.1E-06 6.7E-11 52.5 6.5 45 2-47 50-98 (98)
221 cd07702 Ig2_VEGFR-1 Second imm 98.3 1.8E-06 3.8E-11 49.9 5.0 28 9-36 34-61 (72)
222 cd05741 Ig_CEACAM_D1_like Firs 98.3 7.3E-06 1.6E-10 50.1 8.1 71 64-137 1-90 (92)
223 cd05775 Ig_SLAM-CD84_like_N N- 98.3 7.4E-06 1.6E-10 50.6 7.9 77 62-138 2-95 (97)
224 cd05897 Ig2_IL1R2_like Second 98.3 2.6E-06 5.6E-11 52.0 5.7 39 8-46 52-93 (95)
225 cd05877 Ig_LP_like Immunoglobu 98.3 2.2E-06 4.7E-11 54.0 5.6 45 2-47 56-103 (106)
226 cd05901 Ig_Versican Immunoglob 98.3 3.4E-06 7.4E-11 53.3 6.3 45 2-47 65-114 (117)
227 cd05750 Ig_Pro_neuregulin Immu 98.3 1.7E-06 3.7E-11 50.7 4.7 32 10-42 42-73 (75)
228 cd05901 Ig_Versican Immunoglob 98.3 3.9E-05 8.4E-10 48.6 10.8 38 103-140 77-114 (117)
229 cd05715 Ig_P0-like Immunoglobu 98.3 1.6E-05 3.5E-10 50.9 9.3 74 56-129 5-104 (116)
230 cd05714 Ig_CSPGs_LP Immunoglob 98.3 2.8E-06 6.1E-11 53.5 5.7 40 8-48 65-104 (106)
231 cd04972 Ig_TrkABC_d4 Fourth do 98.3 2.8E-06 6.1E-11 51.8 5.4 36 10-46 55-90 (90)
232 cd05879 Ig_P0 Immunoglobulin ( 98.3 3.1E-06 6.7E-11 53.9 5.8 45 2-46 67-116 (116)
233 cd05871 Ig_Semaphorin_classIII 98.3 4.4E-06 9.6E-11 50.9 6.0 37 11-48 53-90 (91)
234 cd05755 Ig2_ICAM-1_like Second 98.3 1.3E-05 2.7E-10 49.3 7.9 71 60-130 12-87 (100)
235 cd07706 IgV_TCR_delta Immunogl 98.2 1.6E-05 3.4E-10 51.0 8.8 74 54-127 4-94 (116)
236 cd05757 Ig2_IL1R_like Second i 98.2 6.8E-06 1.5E-10 50.1 6.7 28 9-36 50-77 (92)
237 cd04979 Ig_Semaphorin_C Immuno 98.2 3.4E-06 7.4E-11 51.3 5.4 39 10-48 50-88 (89)
238 cd05883 Ig2_Necl-2 Second immu 98.2 1.2E-05 2.7E-10 47.4 7.4 62 67-128 2-67 (82)
239 cd05874 Ig6_NrCAM Sixth immuno 98.2 4.6E-06 1E-10 49.1 5.7 42 3-44 31-76 (77)
240 cd05878 Ig_Aggrecan_like Immun 98.2 4.3E-06 9.3E-11 52.9 5.8 46 2-48 58-108 (110)
241 cd00098 IgC Immunoglobulin Con 98.2 1.1E-05 2.4E-10 49.6 7.5 68 62-129 11-86 (95)
242 cd07701 Ig1_Necl-3 First (N-te 98.2 4.4E-06 9.5E-11 51.4 5.5 43 2-46 50-95 (95)
243 cd05761 Ig2_Necl-1-4_like Seco 98.2 1.3E-05 2.8E-10 47.8 7.4 63 67-129 2-69 (82)
244 cd05891 Ig_M-protein_C C-termi 98.2 2.1E-05 4.5E-10 48.1 8.4 78 151-237 12-91 (92)
245 cd07705 Ig2_Necl-1 Second immu 98.2 2.6E-05 5.7E-10 46.6 8.5 62 67-129 2-70 (83)
246 cd05882 Ig1_Necl-1 First (N-te 98.2 5.5E-06 1.2E-10 50.8 5.6 42 2-45 50-94 (95)
247 cd05888 Ig1_Nectin-4_like Frst 98.2 3.7E-05 8.1E-10 47.7 9.1 74 66-139 2-99 (100)
248 cd05902 Ig_Neurocan Immunoglob 98.2 5.4E-05 1.2E-09 47.7 9.7 77 64-140 2-107 (110)
249 PF08205 C2-set_2: CD80-like C 98.2 8.6E-05 1.9E-09 45.0 10.5 80 50-130 1-86 (89)
250 cd05898 Ig5_KIRREL3 Fifth immu 98.2 2E-05 4.2E-10 48.5 7.4 78 150-232 11-93 (98)
251 cd05848 Ig1_Contactin-5 First 98.1 8.6E-06 1.9E-10 50.0 5.8 35 10-44 57-92 (94)
252 cd05886 Ig1_Nectin-1_like Firs 98.1 0.0001 2.2E-09 45.5 10.3 36 104-139 62-98 (99)
253 cd05758 Ig5_KIRREL3-like Fifth 98.1 1E-05 2.2E-10 50.1 5.9 42 2-44 49-97 (98)
254 cd05849 Ig1_Contactin-1 First 98.1 1.2E-05 2.6E-10 49.2 6.0 36 10-45 56-92 (93)
255 cd05889 Ig1_DNAM-1_like First 98.1 1.7E-05 3.7E-10 48.6 6.3 43 2-44 48-93 (96)
256 cd05850 Ig1_Contactin-2 First 98.1 1.9E-05 4.1E-10 48.5 6.5 36 10-45 57-93 (94)
257 cd05717 Ig1_Necl-1-3_like Firs 98.1 1.4E-05 3.1E-10 49.2 5.8 43 2-46 50-95 (95)
258 cd00063 FN3 Fibronectin type 3 98.1 9.1E-05 2E-09 44.7 9.5 77 154-238 13-91 (93)
259 PHA02987 Ig domain OX-2-like p 98.1 9E-05 2E-09 50.3 9.7 83 58-140 24-122 (189)
260 cd07694 Ig2_CD4 Second immunog 98.1 7.4E-05 1.6E-09 44.2 8.1 74 60-139 10-85 (88)
261 cd05772 IgC_SIRP Signal-regula 98.1 0.00015 3.3E-09 45.8 10.1 67 61-128 18-92 (111)
262 cd05884 Ig2_Necl-3 Second immu 98.1 6E-05 1.3E-09 45.0 7.9 62 67-128 2-69 (83)
263 cd05722 Ig1_Neogenin First imm 98.0 1.5E-05 3.3E-10 49.1 5.5 36 11-46 54-95 (95)
264 cd05743 Ig_Perlecan_D2_like Im 98.0 7.1E-05 1.5E-09 44.1 8.2 72 155-238 1-76 (78)
265 cd05846 Ig1_MRC-OX-2_like Firs 98.0 5.8E-05 1.3E-09 46.6 7.8 76 64-139 1-96 (97)
266 cd05887 Ig1_Nectin-3_like Firs 98.0 0.00014 3.1E-09 44.5 9.2 75 65-139 1-95 (96)
267 cd05896 Ig1_IL1RAPL-1_like Fir 98.0 2.2E-05 4.8E-10 48.2 5.6 40 5-45 64-103 (104)
268 cd05727 Ig2_Contactin-2-like S 98.0 7.7E-06 1.7E-10 49.9 3.6 35 2-36 51-85 (96)
269 cd05716 Ig_pIgR Immunoglobulin 98.0 6.3E-05 1.4E-09 46.6 7.8 70 59-128 2-87 (98)
270 cd05712 Ig_Siglec_N Immunoglob 98.0 0.00011 2.5E-09 47.2 8.8 72 56-127 6-102 (119)
271 cd05720 Ig_CD8_alpha Immunoglo 98.0 7.4E-05 1.6E-09 46.8 7.6 66 61-126 3-90 (104)
272 cd05754 Ig3_Perlecan_like Thir 98.0 1.5E-05 3.2E-10 48.0 4.1 34 10-44 51-84 (85)
273 smart00409 IG Immunoglobulin. 97.9 6E-05 1.3E-09 44.9 6.9 44 2-46 40-85 (86)
274 smart00410 IG_like Immunoglobu 97.9 6E-05 1.3E-09 44.9 6.9 44 2-46 40-85 (86)
275 cd05880 Ig_EVA1 Immunoglobulin 97.9 2.5E-05 5.5E-10 49.9 5.3 38 9-46 77-115 (115)
276 cd05739 Ig3_RPTP_IIa_LAR_like 97.9 2.8E-05 6.1E-10 44.6 5.0 32 10-44 37-68 (69)
277 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00024 5.1E-09 43.5 9.2 74 49-128 2-83 (93)
278 cd05881 Ig1_Necl-2 First (N-te 97.9 4.4E-05 9.5E-10 46.6 5.9 34 1-34 49-85 (95)
279 cd00096 Ig Immunoglobulin doma 97.9 9.8E-05 2.1E-09 42.1 7.3 62 67-128 1-66 (74)
280 cd05715 Ig_P0-like Immunoglobu 97.9 3.3E-05 7.2E-10 49.4 5.5 44 2-45 67-115 (116)
281 cd05752 Ig1_FcgammaR_like Frst 97.9 2E-05 4.3E-10 46.5 4.0 35 8-46 44-78 (78)
282 cd07700 IgV_CD8_beta Immunoglo 97.9 9.7E-05 2.1E-09 46.5 7.4 67 60-126 2-93 (107)
283 cd05846 Ig1_MRC-OX-2_like Firs 97.9 3.2E-05 6.9E-10 47.8 5.1 38 9-46 59-96 (97)
284 PHA02633 hypothetical protein; 97.9 5.3E-05 1.1E-09 41.2 5.1 41 9-50 16-56 (63)
285 cd05729 Ig2_FGFR_like Second i 97.9 3.2E-05 7E-10 46.4 5.0 35 11-46 51-85 (85)
286 cd05770 IgC_beta2m Class I maj 97.9 0.00041 8.9E-09 42.2 9.5 65 62-128 13-83 (93)
287 cd07693 Ig1_Robo First immunog 97.8 6.8E-05 1.5E-09 46.5 5.8 29 18-46 71-99 (100)
288 PF07686 V-set: Immunoglobulin 97.8 5.1E-05 1.1E-09 48.3 5.2 45 2-46 66-114 (114)
289 smart00060 FN3 Fibronectin typ 97.8 0.00054 1.2E-08 40.1 9.1 67 155-229 14-82 (83)
290 PHA03273 envelope glycoprotein 97.8 0.01 2.2E-07 46.2 19.2 78 12-91 199-280 (486)
291 smart00408 IGc2 Immunoglobulin 97.8 5.8E-05 1.3E-09 42.0 4.5 30 6-35 34-63 (63)
292 KOG4367|consensus 97.8 4.4E-05 9.5E-10 58.0 4.7 92 141-242 438-531 (699)
293 cd05751 Ig1_LILRB1_like First 97.8 0.00051 1.1E-08 41.8 8.7 77 151-239 12-89 (91)
294 cd04967 Ig1_Contactin First Ig 97.7 6.3E-05 1.4E-09 45.9 4.5 30 10-39 57-87 (91)
295 cd05845 Ig2_L1-CAM_like Second 97.7 2.4E-05 5.1E-10 47.7 2.5 34 1-35 49-83 (95)
296 cd05873 Ig_Sema4D_like Immunog 97.7 6.2E-05 1.4E-09 45.2 4.3 30 3-34 42-71 (87)
297 cd04981 IgV_H Immunoglobulin ( 97.7 0.00037 8E-09 44.6 8.0 71 56-126 4-97 (117)
298 cd05767 IgC_MHC_II_alpha Class 97.7 0.00085 1.8E-08 41.0 9.0 63 63-128 14-84 (94)
299 cd05889 Ig1_DNAM-1_like First 97.7 0.0014 3.1E-08 40.1 9.5 36 103-138 58-94 (96)
300 PHA03271 envelope glycoprotein 97.7 0.015 3.3E-07 44.6 18.2 79 12-92 208-291 (490)
301 cd07690 Ig1_CD4 First immunogl 97.6 3.2E-05 7E-10 47.2 1.9 27 10-36 64-90 (94)
302 cd05872 Ig_Sema4B_like Immunog 97.6 0.00023 4.9E-09 42.5 5.5 43 3-47 41-83 (85)
303 PF13895 Ig_2: Immunoglobulin 97.6 0.00018 3.9E-09 42.4 5.2 36 11-46 45-80 (80)
304 smart00407 IGc1 Immunoglobulin 97.6 0.0011 2.4E-08 38.7 8.4 62 67-128 2-71 (75)
305 PHA03269 envelope glycoprotein 97.6 0.02 4.3E-07 45.0 19.5 80 11-92 289-373 (566)
306 cd07699 IgC_L Immunoglobulin C 97.6 0.00044 9.5E-09 42.9 6.6 68 61-128 14-89 (100)
307 cd05766 IgC_MHC_II_beta Class 97.6 0.0038 8.3E-08 38.2 10.4 64 62-128 12-83 (94)
308 cd05749 Ig2_Tyro3_like Second 97.6 0.00017 3.6E-09 42.8 4.2 33 10-44 48-80 (81)
309 smart00406 IGv Immunoglobulin 97.5 0.00077 1.7E-08 39.8 6.9 58 67-124 2-81 (81)
310 cd04983 IgV_TCR_alpha_like Imm 97.5 0.0002 4.3E-09 45.3 4.1 33 2-34 57-93 (109)
311 cd05860 Ig4_SCFR Fourth immuno 97.5 0.00074 1.6E-08 41.5 6.3 88 151-240 14-101 (101)
312 cd05847 IgC_CH2_IgE CH2 domain 97.4 0.0024 5.1E-08 39.1 8.0 68 63-130 13-88 (94)
313 PF11465 Receptor_2B4: Natural 97.4 0.00063 1.4E-08 41.6 5.2 46 2-47 62-107 (108)
314 PF13927 Ig_3: Immunoglobulin 97.3 0.00035 7.6E-09 40.5 3.8 26 7-32 50-75 (75)
315 PF00047 ig: Immunoglobulin do 97.3 0.0002 4.3E-09 40.3 2.6 18 13-30 47-64 (64)
316 cd05768 IgC_CH4 CH4 domain (fo 97.3 0.0018 3.8E-08 40.3 6.7 67 62-128 14-91 (102)
317 cd00099 IgV Immunoglobulin var 97.3 0.00046 1E-08 43.2 4.0 34 2-35 54-91 (105)
318 PHA03270 envelope glycoprotein 97.2 0.06 1.3E-06 41.7 19.9 79 12-92 183-265 (466)
319 cd05719 Ig2_PVR_like Second im 97.2 0.0063 1.4E-07 37.3 8.4 66 64-130 15-84 (95)
320 PF07654 C1-set: Immunoglobuli 97.2 0.0094 2E-07 35.5 8.8 64 63-129 7-78 (83)
321 cd05769 IgC_TCR_beta T cell re 97.2 0.0067 1.4E-07 38.6 8.4 73 63-135 17-99 (115)
322 smart00406 IGv Immunoglobulin 97.2 0.00036 7.8E-09 41.3 2.6 29 2-30 49-81 (81)
323 cd07692 Ig_CD3_epsilon Immunog 97.2 0.0013 2.9E-08 36.5 4.5 52 62-127 5-56 (65)
324 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0045 9.7E-08 37.9 7.2 73 64-137 15-91 (95)
325 PHA02987 Ig domain OX-2-like p 97.1 0.0013 2.8E-08 44.9 5.2 41 9-49 83-124 (189)
326 cd07696 IgC_CH3 CH3 domain (th 97.1 0.006 1.3E-07 37.5 7.8 68 61-128 11-86 (96)
327 cd04985 IgC_CH1 CH1 domain (fi 97.1 0.015 3.2E-07 35.7 9.4 65 63-128 15-87 (95)
328 cd05712 Ig_Siglec_N Immunoglob 97.1 0.00071 1.5E-08 43.5 3.7 32 2-33 67-102 (119)
329 cd07697 IgC_TCR_gamma T cell r 97.1 0.005 1.1E-07 37.8 7.2 63 63-127 15-84 (96)
330 cd05899 IgV_TCR_beta Immunoglo 97.1 0.0009 2E-08 42.4 3.7 24 10-33 71-94 (110)
331 cd05716 Ig_pIgR Immunoglobulin 97.1 0.0013 2.9E-08 40.6 4.4 33 2-34 51-87 (98)
332 cd04984 IgV_L_lambda Immunoglo 96.9 0.0016 3.4E-08 40.3 3.8 31 3-33 53-85 (98)
333 cd05885 Ig2_Necl-4 Second immu 96.9 0.018 3.9E-07 33.9 7.9 71 158-234 2-73 (80)
334 cd05721 IgV_CTLA-4 Immunoglobu 96.8 0.024 5.2E-07 35.7 8.6 70 57-126 6-95 (115)
335 cd04980 IgV_L_kappa Immunoglob 96.8 0.0027 5.8E-08 39.9 4.3 23 11-33 71-93 (106)
336 cd04982 IgV_TCR_gamma Immunogl 96.8 0.0022 4.9E-08 41.0 4.0 31 2-32 64-98 (116)
337 cd05711 Ig_FcalphaRI Immunoglo 96.8 0.046 1E-06 33.4 9.6 80 151-239 11-93 (94)
338 cd07706 IgV_TCR_delta Immunogl 96.7 0.0017 3.7E-08 41.5 3.0 32 2-33 59-94 (116)
339 cd07700 IgV_CD8_beta Immunoglo 96.5 0.0057 1.2E-07 38.5 4.3 22 11-32 72-93 (107)
340 PHA02633 hypothetical protein; 96.5 0.013 2.9E-07 32.0 4.9 39 104-142 17-55 (63)
341 cd07694 Ig2_CD4 Second immunog 96.4 0.012 2.5E-07 35.0 4.8 37 9-46 49-85 (88)
342 cd07691 Ig_CD3_gamma_delta Imm 96.4 0.027 5.9E-07 31.7 5.8 50 63-126 5-54 (69)
343 PHA02982 hypothetical protein; 96.4 0.07 1.5E-06 37.2 8.9 81 3-89 92-173 (251)
344 cd05759 Ig2_KIRREL3-like Secon 96.3 0.0078 1.7E-07 35.7 3.9 35 11-45 46-81 (82)
345 cd04986 IgC_CH2 CH2 domain (se 96.3 0.026 5.6E-07 34.8 6.1 67 61-128 16-89 (99)
346 TIGR00864 PCC polycystin catio 96.2 1.4 3E-05 43.1 23.1 196 18-241 1834-2041(2740)
347 cd07689 Ig2_VCAM-1 Second immu 96.1 0.05 1.1E-06 33.3 6.6 68 61-129 12-87 (99)
348 cd05720 Ig_CD8_alpha Immunoglo 96.1 0.0047 1E-07 38.6 2.3 24 9-32 67-90 (104)
349 cd07704 Ig2_Nectin-3-4_like Se 96.1 0.063 1.4E-06 32.9 7.0 66 58-128 10-84 (97)
350 KOG0196|consensus 96.0 0.07 1.5E-06 45.0 9.0 89 152-244 341-442 (996)
351 KOG4802|consensus 96.0 0.03 6.4E-07 43.1 6.5 92 142-241 146-249 (516)
352 PHA02982 hypothetical protein; 96.0 0.029 6.2E-07 39.0 5.8 73 60-132 35-127 (251)
353 PF01108 Tissue_fac: Tissue fa 95.8 0.13 2.7E-06 32.3 7.8 68 154-228 33-103 (107)
354 cd04981 IgV_H Immunoglobulin ( 95.6 0.02 4.3E-07 36.7 3.6 21 12-32 77-97 (117)
355 PF08204 V-set_CD47: CD47 immu 95.5 0.019 4.1E-07 37.1 3.2 80 60-140 23-120 (130)
356 cd05755 Ig2_ICAM-1_like Second 95.3 0.31 6.7E-06 30.1 7.9 74 152-229 13-87 (100)
357 cd00096 Ig Immunoglobulin doma 95.1 0.03 6.4E-07 31.3 3.0 27 8-34 40-66 (74)
358 PF05790 C2-set: Immunoglobuli 94.7 0.38 8.3E-06 28.3 6.9 28 4-31 36-63 (80)
359 PF07354 Sp38: Zona-pellucida- 94.7 0.068 1.5E-06 38.7 4.4 49 77-128 11-60 (271)
360 KOG1480|consensus 94.5 0.0042 9.1E-08 51.3 -2.2 75 54-131 134-209 (909)
361 cd07689 Ig2_VCAM-1 Second immu 94.4 0.68 1.5E-05 28.4 8.0 37 141-177 1-37 (99)
362 cd07691 Ig_CD3_gamma_delta Imm 94.3 0.075 1.6E-06 29.9 3.1 23 10-32 32-54 (69)
363 PF07354 Sp38: Zona-pellucida- 94.1 0.058 1.3E-06 39.0 3.1 31 2-33 29-59 (271)
364 cd05883 Ig2_Necl-2 Second immu 94.0 0.21 4.5E-06 29.6 4.7 38 11-48 44-81 (82)
365 KOG4802|consensus 93.8 0.73 1.6E-05 35.9 8.3 123 105-232 209-342 (516)
366 PF06328 Lep_receptor_Ig: Ig-l 93.7 0.89 1.9E-05 27.4 7.4 67 57-125 11-82 (89)
367 TIGR00864 PCC polycystin catio 93.5 8.7 0.00019 38.2 20.6 192 16-242 1662-1867(2740)
368 PHA03042 CD47-like protein; Pr 93.5 0.78 1.7E-05 33.6 7.7 71 62-139 29-104 (286)
369 PF08204 V-set_CD47: CD47 immu 93.2 0.078 1.7E-06 34.3 2.3 37 8-46 83-119 (130)
370 KOG4597|consensus 93.0 0.17 3.6E-06 40.0 4.1 81 60-140 207-292 (560)
371 KOG0613|consensus 92.1 1.6 3.5E-05 39.1 9.1 124 9-133 276-421 (1205)
372 PHA03286 envelope glycoprotein 92.1 4 8.6E-05 32.5 10.2 77 9-85 125-225 (492)
373 cd07698 IgC_MHC_I_alpha3 Class 92.0 1.6 3.5E-05 26.4 6.9 13 155-167 14-26 (93)
374 KOG0613|consensus 91.8 1.3 2.8E-05 39.7 8.3 164 61-239 241-428 (1205)
375 PHA03283 envelope glycoprotein 91.7 3.8 8.3E-05 33.2 10.0 40 8-48 131-170 (542)
376 PF05790 C2-set: Immunoglobuli 91.6 1.8 3.8E-05 25.6 8.3 49 79-137 27-76 (80)
377 PHA02865 MHC-like TNF binding 91.4 1.7 3.7E-05 33.3 7.6 35 48-86 202-238 (338)
378 PF07495 Y_Y_Y: Y_Y_Y domain; 91.3 1.6 3.4E-05 24.4 6.7 52 176-238 11-63 (66)
379 PHA02914 Immunoglobulin-like d 91.2 1.6 3.5E-05 34.0 7.3 77 9-91 344-422 (500)
380 cd05884 Ig2_Necl-3 Second immu 91.1 2.1 4.5E-05 25.4 8.5 23 158-181 2-24 (83)
381 PF09294 Interfer-bind: Interf 90.8 2.4 5.3E-05 26.3 7.1 60 171-240 44-105 (106)
382 cd05772 IgC_SIRP Signal-regula 90.4 3.1 6.8E-05 26.3 8.0 43 139-181 4-47 (111)
383 cd05721 IgV_CTLA-4 Immunoglobu 90.1 0.24 5.2E-06 31.3 1.9 23 9-31 72-94 (115)
384 KOG1480|consensus 88.7 0.34 7.3E-06 40.8 2.3 38 10-47 182-219 (909)
385 cd05761 Ig2_Necl-1-4_like Seco 88.3 3.6 7.8E-05 24.2 7.8 23 158-181 2-24 (82)
386 KOG4258|consensus 87.9 3.7 8E-05 35.5 7.6 94 151-244 497-610 (1025)
387 PHA03281 envelope glycoprotein 87.5 15 0.00032 30.3 10.8 76 10-85 297-394 (642)
388 PHA03052 Hypothetical protein; 87.2 2.3 5E-05 23.9 4.2 36 57-92 5-43 (69)
389 COG5475 Uncharacterized small 87.2 2.3 5E-05 22.7 4.0 33 2-36 9-41 (60)
390 PHA03282 envelope glycoprotein 87.1 2.4 5.1E-05 33.8 5.8 44 2-47 117-161 (540)
391 PF02480 Herpes_gE: Alphaherpe 86.0 1.2 2.5E-05 35.8 3.8 76 10-85 88-189 (439)
392 cd00098 IgC Immunoglobulin Con 85.7 3.8 8.3E-05 24.6 5.4 14 154-167 12-25 (95)
393 PLN02533 probable purple acid 85.6 11 0.00024 30.4 9.1 35 203-243 102-136 (427)
394 cd07705 Ig2_Necl-1 Second immu 84.6 6.2 0.00014 23.3 8.7 23 158-181 2-24 (83)
395 PHA02914 Immunoglobulin-like d 84.1 3.1 6.7E-05 32.5 5.1 40 12-53 82-121 (500)
396 KOG4258|consensus 84.1 3.7 7.9E-05 35.6 5.9 78 154-238 841-920 (1025)
397 cd05847 IgC_CH2_IgE CH2 domain 83.7 6 0.00013 24.1 5.5 16 154-169 13-28 (94)
398 PF06832 BiPBP_C: Penicillin-B 83.1 7.8 0.00017 23.2 8.3 56 66-133 31-86 (89)
399 KOG4152|consensus 82.8 1.4 3.1E-05 35.6 3.0 34 208-241 651-684 (830)
400 PHA03269 envelope glycoprotein 82.2 26 0.00056 28.6 11.2 77 105-181 289-369 (566)
401 cd07699 IgC_L Immunoglobulin C 81.3 5.4 0.00012 24.6 4.7 27 154-180 16-42 (100)
402 smart00407 IGc1 Immunoglobulin 81.0 8.3 0.00018 22.1 6.4 22 158-179 2-23 (75)
403 cd05766 IgC_MHC_II_beta Class 79.7 11 0.00024 22.9 8.8 28 154-181 13-40 (94)
404 PF07654 C1-set: Immunoglobuli 79.4 10 0.00022 22.2 6.0 15 155-169 8-22 (83)
405 PHA03273 envelope glycoprotein 79.3 22 0.00049 28.7 8.2 77 105-181 198-277 (486)
406 PF13754 Big_3_4: Bacterial Ig 79.3 7.7 0.00017 20.8 5.2 28 206-234 16-43 (54)
407 PHA03042 CD47-like protein; Pr 76.9 5.4 0.00012 29.5 4.1 33 11-45 71-103 (286)
408 PHA03282 envelope glycoprotein 76.5 2.7 5.8E-05 33.5 2.7 30 4-33 326-355 (540)
409 cd05719 Ig2_PVR_like Second im 74.9 6.3 0.00014 24.1 3.6 34 12-45 60-94 (95)
410 PF11465 Receptor_2B4: Natural 74.3 19 0.0004 22.6 9.1 37 103-139 69-106 (108)
411 PF08205 C2-set_2: CD80-like C 74.3 16 0.00034 21.7 5.5 24 205-228 62-85 (89)
412 cd07703 Ig2_Nectin-2_like Seco 71.8 12 0.00027 22.8 4.3 24 12-35 60-83 (95)
413 PHA02935 Hypothetical protein; 71.7 12 0.00025 26.3 4.6 61 13-75 104-166 (349)
414 cd07696 IgC_CH3 CH3 domain (th 71.2 21 0.00046 21.8 5.5 15 153-167 12-26 (96)
415 cd05890 Ig2_Nectin-1_like Seco 70.5 22 0.00048 21.8 5.3 57 67-128 23-87 (98)
416 TIGR00868 hCaCC calcium-activa 69.7 71 0.0015 28.6 9.7 84 152-235 765-861 (863)
417 cd05770 IgC_beta2m Class I maj 69.4 23 0.0005 21.6 6.5 13 211-223 69-81 (93)
418 PHA03286 envelope glycoprotein 69.3 7.2 0.00016 31.1 3.5 23 11-33 307-329 (492)
419 PF02480 Herpes_gE: Alphaherpe 69.1 4.7 0.0001 32.5 2.6 30 4-33 262-291 (439)
420 PF10179 DUF2369: Uncharacteri 68.9 50 0.0011 25.3 16.7 39 204-242 260-298 (300)
421 PF09067 EpoR_lig-bind: Erythr 67.1 28 0.00061 21.8 9.3 84 142-230 9-96 (104)
422 KOG4228|consensus 67.0 17 0.00038 32.7 5.6 110 119-242 1-111 (1087)
423 PF03921 ICAM_N: Intercellular 66.4 27 0.00058 21.2 9.9 76 53-139 7-85 (91)
424 PHA03290 envelope glycoprotein 64.8 21 0.00045 27.4 5.0 37 10-47 128-164 (357)
425 cd05767 IgC_MHC_II_alpha Class 63.7 31 0.00067 21.0 7.5 13 155-167 15-27 (94)
426 KOG4597|consensus 62.8 8.4 0.00018 31.0 2.8 37 10-47 256-292 (560)
427 cd04986 IgC_CH2 CH2 domain (se 61.9 36 0.00077 21.1 6.0 15 154-168 18-32 (99)
428 PF09423 PhoD: PhoD-like phosp 61.8 54 0.0012 26.8 7.4 37 204-243 64-100 (453)
429 PHA03283 envelope glycoprotein 61.7 10 0.00022 31.0 3.1 30 4-33 308-337 (542)
430 PF02010 REJ: REJ domain; Int 61.5 19 0.00041 29.1 4.8 27 204-230 260-288 (440)
431 cd07697 IgC_TCR_gamma T cell r 60.8 36 0.00079 20.9 7.6 14 154-167 15-28 (96)
432 PHA03281 envelope glycoprotein 59.4 10 0.00022 31.1 2.8 30 4-33 468-497 (642)
433 PF11344 DUF3146: Protein of u 57.3 8.6 0.00019 22.1 1.5 15 210-224 66-80 (80)
434 PHA03189 UL14 tegument protein 57.0 87 0.0019 24.0 9.0 23 112-134 140-163 (348)
435 KOG1026|consensus 56.4 85 0.0018 27.7 7.6 70 60-139 203-272 (774)
436 PHA03289 envelope glycoprotein 56.2 34 0.00073 26.2 4.8 36 10-46 121-156 (352)
437 PHA03112 IL-18 binding protein 55.9 58 0.0013 21.7 5.4 26 62-87 36-63 (141)
438 PHA03292 envelope glycoprotein 53.5 35 0.00076 26.8 4.6 35 11-46 128-162 (413)
439 PHA03240 envelope glycoprotein 52.9 31 0.00068 24.6 4.0 28 102-129 102-129 (258)
440 PF10342 GPI-anchored: Ser-Thr 52.7 48 0.001 19.7 8.7 65 153-222 10-77 (93)
441 KOG0200|consensus 50.3 1.7E+02 0.0036 25.3 9.0 114 7-127 9-139 (609)
442 PF08329 ChitinaseA_N: Chitina 45.7 87 0.0019 20.7 5.8 71 153-238 35-105 (133)
443 KOG4152|consensus 45.5 1.3E+02 0.0029 25.1 6.8 27 210-236 766-792 (830)
444 PHA03291 envelope glycoprotein 45.0 66 0.0014 25.1 4.9 37 10-47 128-164 (401)
445 PF09926 DUF2158: Uncharacteri 41.4 58 0.0013 17.5 3.8 36 1-36 4-42 (53)
446 PHA03270 envelope glycoprotein 41.2 2E+02 0.0043 23.5 18.6 78 104-181 181-261 (466)
447 PHA03240 envelope glycoprotein 36.6 30 0.00066 24.7 2.0 33 4-36 98-130 (258)
448 PHA03189 UL14 tegument protein 36.3 45 0.00097 25.4 2.9 26 17-42 139-164 (348)
449 PF07353 Uroplakin_II: Uroplak 35.3 1.5E+02 0.0032 20.3 8.7 40 202-242 100-139 (184)
450 PF02124 Marek_A: Marek's dise 35.3 1.7E+02 0.0038 21.1 11.8 72 11-90 39-117 (211)
451 PRK14081 triple tyrosine motif 32.8 3.4E+02 0.0074 23.8 21.8 195 17-233 249-466 (667)
452 KOG3611|consensus 31.4 67 0.0014 28.2 3.6 37 13-49 614-650 (737)
453 smart00089 PKD Repeats in poly 31.2 1.1E+02 0.0023 17.5 6.3 17 212-228 52-68 (79)
454 COG4733 Phage-related protein, 30.5 4.1E+02 0.009 24.0 12.2 36 204-240 660-696 (952)
455 PF00801 PKD: PKD domain; Int 30.0 82 0.0018 17.5 2.8 17 213-229 50-66 (69)
456 cd00146 PKD polycystic kidney 29.6 61 0.0013 18.6 2.3 21 212-232 54-74 (81)
457 PF05566 Pox_vIL-18BP: Orthopo 29.3 1.3E+02 0.0028 19.0 3.6 32 12-44 94-125 (126)
458 PF09240 IL6Ra-bind: Interleuk 26.8 1.6E+02 0.0034 18.0 9.0 72 154-233 11-90 (99)
459 PRK15372 pathogenicity island 26.8 1.3E+02 0.0028 22.3 3.8 42 5-52 68-109 (292)
460 PF13750 Big_3_3: Bacterial Ig 26.7 95 0.0021 21.2 3.1 33 208-241 116-148 (158)
461 PF05345 He_PIG: Putative Ig d 26.3 1.1E+02 0.0023 16.0 4.9 15 214-228 35-49 (49)
462 PF02440 Adeno_E3_CR1: Adenovi 25.7 1.3E+02 0.0029 16.8 3.9 19 63-85 4-22 (63)
463 COG3422 Uncharacterized conser 24.1 70 0.0015 17.5 1.6 17 211-227 9-25 (59)
464 PF01688 Herpes_gI: Alphaherpe 23.1 2.4E+02 0.0053 19.4 4.4 26 105-130 124-149 (161)
465 PF12988 DUF3872: Domain of un 20.8 2.7E+02 0.0058 18.5 4.4 41 135-181 33-75 (137)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.6e-31 Score=216.90 Aligned_cols=237 Identities=22% Similarity=0.386 Sum_probs=191.1
Q ss_pred CcceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC--
Q psy12131 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-- 78 (245)
Q Consensus 1 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-- 78 (245)
++|+.+..++. |.|.+++.+|+|.|+|.|.|..|. ...+..|.|++++.+...|....+..|+++.|+|.+.-.+.
T Consensus 470 ~~r~~i~edGt-L~I~n~t~~DaG~YtC~A~N~~G~-a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld 547 (1051)
T KOG3513|consen 470 SGRIRILEDGT-LEISNVTRSDAGKYTCVAENKLGK-AESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLD 547 (1051)
T ss_pred CceEEECCCCc-EEecccCcccCcEEEEEEEcccCc-cceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcc
Confidence 57899988776 999999999999999999999999 79999999999999999998899999999999999975554
Q ss_pred CeEEEEECCEEeccC---CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEecCCCCccccCcccc
Q psy12131 79 AKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNIPVFQKSSRRL 153 (245)
Q Consensus 79 ~~~~w~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~~~~~p~~~~~~~~~ 153 (245)
..+.|.++|..+... .++.+........|+|.+++..|.|.|.|+++....+... .+.+...|.||..+.. ...
T Consensus 548 ~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~-~~i 626 (1051)
T KOG3513|consen 548 ITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHV-DDI 626 (1051)
T ss_pred eEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeE-eee
Confidence 478999999976543 3444433322357999999999999999999986655444 4556666777763332 346
Q ss_pred CCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131 154 GPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231 (245)
Q Consensus 154 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~ 231 (245)
...++.|+|.+ +.++|+.+|.++++... ...|..+....... .++ .+..+.+|.|...|+|||.|.|..|.|+
T Consensus 627 ~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~-~~~W~~v~~vp~~~-~~~---~sa~vv~L~Pwv~YeFRV~AvN~iG~ge 701 (1051)
T KOG3513|consen 627 SDTTARLSWSPGSDNNSPIEKYTIQFRTPF-PGKWKAVTTVPGNI-TGD---ESATVVNLSPWVEYEFRVVAVNSIGIGE 701 (1051)
T ss_pred ccceEEEEeecCCCCCCCceEEeEEecCCC-CCcceEeeECCCcc-cCc---cceeEEccCCCcceEEEEEEEcccccCC
Confidence 77899999999 55589999999999986 88999888544432 221 2366789999999999999999999999
Q ss_pred CCcc-eEEecCCCCC
Q psy12131 232 PSKA-YVFATEGAET 245 (245)
Q Consensus 232 ~s~~-~~~~t~~~~~ 245 (245)
+|.. -.++|.+++|
T Consensus 702 PS~pS~~~rT~ea~P 716 (1051)
T KOG3513|consen 702 PSPPSEKVRTPEAAP 716 (1051)
T ss_pred CCCCccceecCCCCC
Confidence 9984 6778877754
No 2
>KOG3513|consensus
Probab=99.97 E-value=6.6e-28 Score=196.08 Aligned_cols=224 Identities=19% Similarity=0.294 Sum_probs=181.5
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV 81 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 81 (245)
+|+.....+..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+...+....+..|.++.+.|.+.|.|.|.+
T Consensus 285 ~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v 363 (1051)
T KOG3513|consen 285 RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTV 363 (1051)
T ss_pred cceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCce
Confidence 46777788888999999999999999999999996 78999999999999999999999999999999999999999999
Q ss_pred EEEECCEEeccCCc---EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC-----cccc
Q psy12131 82 EWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS-----SRRL 153 (245)
Q Consensus 82 ~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~-----~~~~ 153 (245)
.|++|+.++....+ ..+. ...|.|.+++..|.|.|.|.|.|..|...+.+.|.+...+|.+... ....
T Consensus 364 ~WlkNg~pl~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~ 439 (1051)
T KOG3513|consen 364 KWLKNGEPLEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAV 439 (1051)
T ss_pred EEeeCCeecCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEE
Confidence 99999999886655 5553 3479999999999999999999999999999999988776665543 2346
Q ss_pred CCCeeEEEEEeCCCCCceEEEEEEEeecC-CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131 154 GPDGYRLVWQVDTYSGIIQYLLKFREREE-LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP 232 (245)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~ 232 (245)
.+..+.|.|++.+.+.. .+.|..+.. -.+-..+.+.+. -.+.|.++...+.+.|.|.|.|.+|....
T Consensus 440 ~g~~v~i~C~~~asP~p---~~~W~k~~~~~~~~~r~~i~ed---------GtL~I~n~t~~DaG~YtC~A~N~~G~a~~ 507 (1051)
T KOG3513|consen 440 VGGTVTIDCKPFASPKP---KVSWLKGGEKLLQSGRIRILED---------GTLEISNVTRSDAGKYTCVAENKLGKAES 507 (1051)
T ss_pred eCCeEEEeeccCCCCcc---eEEEEcCCcccccCceEEECCC---------CcEEecccCcccCcEEEEEEEcccCccce
Confidence 78899999999665422 233333321 111112333333 45889999999999999999999999988
Q ss_pred CcceEEecCC
Q psy12131 233 SKAYVFATEG 242 (245)
Q Consensus 233 s~~~~~~t~~ 242 (245)
...+.|+...
T Consensus 508 ~~~L~Vkd~t 517 (1051)
T KOG3513|consen 508 TGNLIVKDAT 517 (1051)
T ss_pred EEEEEEecCc
Confidence 8877776543
No 3
>KOG4221|consensus
Probab=99.95 E-value=1.7e-26 Score=188.04 Aligned_cols=228 Identities=23% Similarity=0.290 Sum_probs=178.6
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 82 (245)
||.+.. +++|.|++++..|+|.|+|+|.|.... ..+.+.|+|..+|.+...+....+.++..+.+.|.+.|.|.|.+.
T Consensus 284 rivl~g-~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~ 361 (1381)
T KOG4221|consen 284 RIVLVG-GSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVR 361 (1381)
T ss_pred EEEEec-ccceEEeccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEE
Confidence 444443 455999999999999999999996555 577788899999999999988888899999999999999999999
Q ss_pred EEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcc-----c-----cCccc
Q psy12131 83 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF-----Q-----KSSRR 152 (245)
Q Consensus 83 w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~-----~-----~~~~~ 152 (245)
|+++|..+.....+.+...+ .+.|..+...|.|.|.|.+.|..|.......+.+.+.+... . .....
T Consensus 362 w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~ 438 (1381)
T KOG4221|consen 362 WYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANL 438 (1381)
T ss_pred EEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceeccc
Confidence 99999988877777775543 28888888899999999999999988877766554432110 0 01223
Q ss_pred cCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131 153 LGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS 230 (245)
Q Consensus 153 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~ 230 (245)
.....+.++|.. ....++..|.+.|+.. ...|..+...... ....++.+|.+.+.|.|+|.|.|..|.+
T Consensus 439 ~~srfi~~tw~~p~~~~g~i~~~~v~~~~~--~~~rer~~~tss~-------g~~~tv~nl~p~t~Y~~rv~A~n~~g~g 509 (1381)
T KOG4221|consen 439 VSSRFIQLTWRPPAQISGNISTYTVFYKVE--GDVRERLQNTSSP-------GIQVTVQNLSPLTMYFFRVRAKNEAGSG 509 (1381)
T ss_pred ccceeEEEeecCccccCCCcceEEEEEecC--CchhhhheeccCC-------ceEEEeeecccceeEEEEEeccCcccCC
Confidence 455678888886 2345777888777774 4556544332221 1788999999999999999999999999
Q ss_pred CCCcceEEecCCCC
Q psy12131 231 RPSKAYVFATEGAE 244 (245)
Q Consensus 231 ~~s~~~~~~t~~~~ 244 (245)
..|..+.|++++++
T Consensus 510 ~sS~pLkV~t~pEg 523 (1381)
T KOG4221|consen 510 ESSAPLKVTTQPEG 523 (1381)
T ss_pred ccCCceEEecCCCC
Confidence 99999999999864
No 4
>KOG4221|consensus
Probab=99.91 E-value=6.7e-23 Score=167.42 Aligned_cols=226 Identities=17% Similarity=0.246 Sum_probs=162.5
Q ss_pred CcceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe------EEeecceEEecCCCeEEEEEEEe
Q psy12131 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE------VSVEKQWIHTAPDMRAEIICNVY 74 (245)
Q Consensus 1 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~~l~C~~~ 74 (245)
|+|+....++. |.|.+++..|.|.|+|.+.+......+..+.|+|...|. |...+....+..|+.+.|.|.+.
T Consensus 184 ~~r~i~lpsG~-L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs 262 (1381)
T KOG4221|consen 184 DSRVIVLPSGA-LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVS 262 (1381)
T ss_pred CCcEEEcCCCc-EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEec
Confidence 45777777766 999999999999999999987665567888888873333 34456666788999999999999
Q ss_pred ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe--CCceeEEEEEEEecCCCCccccCccc
Q psy12131 75 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN--NLGSSQQFIQLSGIPNIPVFQKSSRR 152 (245)
Q Consensus 75 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n--~~g~~~~~~~~~~~~~~p~~~~~~~~ 152 (245)
+.|.|.+.|.+++..+.-++ +.+... ..+.|.|.+++..|.|.|+|.|.| +.+...+.++|...|.-+........
T Consensus 263 ~~p~p~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A 340 (1381)
T KOG4221|consen 263 GVPKPSVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVA 340 (1381)
T ss_pred CCCCCceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceee
Confidence 99999999999999887665 332222 345799999999999999999999 44555666666655443333333444
Q ss_pred cCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131 153 LGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS 230 (245)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~ 230 (245)
.++..+.+.|.+.+. |+..+. ||+... ....|.++.. .. . +.|.++-..+...|+|.|+|..|..
T Consensus 341 ~e~~die~ec~~~g~-p~p~v~-w~kNgd~~ipsdy~ki~~--~~--------~-lrIlgi~~sdeg~yQcvaen~~G~a 407 (1381)
T KOG4221|consen 341 HESMDIEFECPVSGK-PIPTVR-WYKNGDRIIPSDYFKIVG--GG--------N-LRILGIVKSDEGFYQCVAENDAGSA 407 (1381)
T ss_pred eeccceeEeCCCCCC-CcceEE-EEecCcccCcccceEecC--CC--------C-cEEEEEecccchhhhhhhccCcccc
Confidence 567788888888776 665555 666655 3455554422 21 1 4444544555555688899999998
Q ss_pred CCCcceEEecCC
Q psy12131 231 RPSKAYVFATEG 242 (245)
Q Consensus 231 ~~s~~~~~~t~~ 242 (245)
..++.+.+-..+
T Consensus 408 ~a~a~l~vv~~p 419 (1381)
T KOG4221|consen 408 QAAAQLEVVPQP 419 (1381)
T ss_pred cchhhheeccCC
Confidence 887777665554
No 5
>KOG4194|consensus
Probab=99.90 E-value=1.7e-22 Score=155.13 Aligned_cols=156 Identities=21% Similarity=0.328 Sum_probs=130.2
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE-
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA- 89 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~- 89 (245)
+.|.+.|++..|+|.|+|.+.|..|...+..+.|+|...|.+...|.......|+.+.+.|.+.|.|.|+|.|-++|..
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 4599999999999999999999999988889999999999999999999999999999999999999999999997654
Q ss_pred eccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCc--cccCccccCCCeeEEEEEeC
Q psy12131 90 ITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVD 165 (245)
Q Consensus 90 ~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~l~~~~~ 165 (245)
.+.. .+..+.. ....+.|.++..+|.|.|+|+|.|..|..+...++.+...|.. ......+..++++.|.|..+
T Consensus 654 FPAA~eRRl~Vmp--edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~ 731 (873)
T KOG4194|consen 654 FPAARERRLHVMP--EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE 731 (873)
T ss_pred CchhhhheeeecC--CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence 5443 3444443 3347999999999999999999999999888887777644332 22224467899999999996
Q ss_pred CCC
Q psy12131 166 TYS 168 (245)
Q Consensus 166 ~~~ 168 (245)
+.+
T Consensus 732 ~~~ 734 (873)
T KOG4194|consen 732 GAP 734 (873)
T ss_pred CCC
Confidence 654
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.88 E-value=1.7e-19 Score=135.83 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=134.7
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec--CCeEEeecceEEecCCCeEEEEEE-----EeecCCCe
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICN-----VYANPPAK 80 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~ 80 (245)
.++..|.|.++..+|+|.|+|.+.|..|. ....+.|+|.. +|.+...+....+.+|..+.+.|. ..+.+.+.
T Consensus 79 ~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~ 157 (326)
T PHA02785 79 DNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNAD 157 (326)
T ss_pred cCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCce
Confidence 34556999999999999999999998876 56677777754 333322222334668999999997 24568889
Q ss_pred EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE----EEEEEec--CCCCcccc--Cccc
Q psy12131 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ----FIQLSGI--PNIPVFQK--SSRR 152 (245)
Q Consensus 81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~----~~~~~~~--~~~p~~~~--~~~~ 152 (245)
+.|+++.. + ...++... ..+.|.|.++..+|.|.|+|.+.|..|.... .+.+.+. ..||.+.. ....
T Consensus 158 i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~ 232 (326)
T PHA02785 158 IIWSGHRR-L-RNKRLKQR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT 232 (326)
T ss_pred EEEccCCc-c-CCcceEec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEe
Confidence 99987543 2 22333322 2347999999999999999999998775433 2333332 23443221 1223
Q ss_pred cCCCeeEEEEEeCCCCCce-EEEEEEEeec---CCC--CeEEEeeCCCCC--CCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131 153 LGPDGYRLVWQVDTYSGII-QYLLKFRERE---ELT--PWRNIVIPSDGS--LAGPIYTQSYNITGLQLFTQYEASVLAK 224 (245)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~---~~~--~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~y~~~v~a~ 224 (245)
..|..+.|.|.+.+.++.. .-..|+++.. ..+ .-..+....... .........+.|.++...+.+.|.|.|.
T Consensus 233 ~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~ 312 (326)
T PHA02785 233 SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAF 312 (326)
T ss_pred cCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEE
Confidence 4588999999997654321 1122333322 000 001111111000 0011123678999999999999999999
Q ss_pred ecCCCC
Q psy12131 225 NRFGWS 230 (245)
Q Consensus 225 N~~G~~ 230 (245)
|..|..
T Consensus 313 n~~~~~ 318 (326)
T PHA02785 313 TIPSIS 318 (326)
T ss_pred eccCce
Confidence 988543
No 7
>KOG4222|consensus
Probab=99.84 E-value=8.8e-20 Score=148.69 Aligned_cols=221 Identities=20% Similarity=0.220 Sum_probs=160.8
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA 89 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~ 89 (245)
+..|.|.+++++|+|.|.|.+.|..|...+....|.|.++|.+...+....+..|..+.+.|.+.|.|.|.+.|.+++..
T Consensus 186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~ 265 (1281)
T KOG4222|consen 186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS 265 (1281)
T ss_pred CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCC
Confidence 44599999999999999999999999988899999999999999999999999999999999999999999999997776
Q ss_pred eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC---ccccCCCeeEEEEEeCC
Q psy12131 90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDT 166 (245)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~ 166 (245)
++.. ++.+.. .+.++.|..+.+.|.|.|.|.+.|..|.......+.++. +|.|.+. ..+.-+..++|.|+..+
T Consensus 266 ~P~~-ry~i~~--d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-pP~f~kkp~dq~v~lg~~vt~pc~~~g 341 (1281)
T KOG4222|consen 266 LPRS-RYSILD--DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-PPSFGKKPRDQKVALGGTVTFPCETLG 341 (1281)
T ss_pred CCcc-ceeeee--ccccccccccCCCcccceeeeccccccccccccceEEec-CcccccccCccccccCceEEeeeecCC
Confidence 6654 333332 234799999999999999999999999888777766653 3333322 33456779999999977
Q ss_pred CCC-ceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131 167 YSG-IIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA 239 (245)
Q Consensus 167 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~ 239 (245)
+++ +..|. +... .-.-|.. -+..+....-.-.-.++++++...+...|-|.+.|..|.+-.-..+.++
T Consensus 342 nP~PavfW~---keg~q~llf~~~--p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 342 NPPPAVFWL---KEGSQDLLFSAS--PPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred CCCcceEEe---ccCcceecccCC--CCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEE
Confidence 754 33232 2221 0000100 0000000000001367888998888888888899999987665544443
No 8
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=9.9e-18 Score=118.99 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=88.1
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-----cCCCeEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-----NPPAKVEWF 84 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~w~ 84 (245)
+..|.|.+++.+|+|.|+|.|.|..+. ....+.|.|..++ ....+.+|+.+.|.|.+.+ .|.|.+.|+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy 169 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY 169 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence 457999999999999999999997766 6777778875432 1234568999999999853 457899999
Q ss_pred ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+++..+....++.+.. ....|.|.++..+|.|.|+|.+....
T Consensus 170 Kng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 170 KNGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ECCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 9999987666655432 34589999999999999999999864
No 9
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.77 E-value=3.1e-17 Score=101.57 Aligned_cols=95 Identities=21% Similarity=0.384 Sum_probs=81.8
Q ss_pred CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++...|.|.|+|.+.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 45666677788999999999999999999999999999999877777777666778999999999999999999999999
Q ss_pred eeEEEEEEEe--cCCCC
Q psy12131 130 SSQQFIQLSG--IPNIP 144 (245)
Q Consensus 130 ~~~~~~~~~~--~~~~p 144 (245)
.....+.|.+ .|.||
T Consensus 81 ~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 81 SRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ceeEEEEEEEecCCCCC
Confidence 9888777665 45554
No 10
>KOG4222|consensus
Probab=99.76 E-value=4e-18 Score=139.23 Aligned_cols=229 Identities=23% Similarity=0.310 Sum_probs=163.9
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe---c---CCeEEeecceEEecCCCeEEEEEEEee
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---Y---PPEVSVEKQWIHTAPDMRAEIICNVYA 75 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~---~p~~~~~~~~~~~~~g~~~~l~C~~~~ 75 (245)
+|-++...+ +|+|.+++..|.|.|.|...+..+....+.+..++. . +|.+...+.......+....+.|.+.+
T Consensus 368 ~r~svs~~g-~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg 446 (1281)
T KOG4222|consen 368 GRGSVSPTG-TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATG 446 (1281)
T ss_pred ccceecCCC-CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhC
Confidence 345556555 699999999999999999998887754444333332 1 233333444555667889999999999
Q ss_pred cCCCeEEEEECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC-------------
Q psy12131 76 NPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP------------- 141 (245)
Q Consensus 76 ~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~------------- 141 (245)
.|.+.+.|++++..+.... +..+. ....+++..+...|.|.|+|.+.+..|...-...+.+..
T Consensus 447 ~P~p~i~wl~dg~~v~~~d~~~s~~---~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~ 523 (1281)
T KOG4222|consen 447 APTPNISWLKDGCNVMNPDSRISQQ---EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDP 523 (1281)
T ss_pred CCCCCchhhhcccccccCCccccee---eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCCh
Confidence 9999999999987765443 22222 235799999999999999999999988877666655421
Q ss_pred ----CCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131 142 ----NIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214 (245)
Q Consensus 142 ----~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 214 (245)
.+| .......+....++|.|.. .+..|+..|++++-.......|.+...-... ..+.|.+|.+.
T Consensus 524 S~~pS~p-~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~--------t~~~I~gL~P~ 594 (1281)
T KOG4222|consen 524 SALPSPP-GTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKT--------TTYAIRGLKPN 594 (1281)
T ss_pred hhCCCCC-CCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhccccccccccccc--------ceeeecCcCcc
Confidence 111 1122345778899999998 2346888898877554446677665433332 77899999999
Q ss_pred ceEEEEEEEEecCCCCCCCcc-eEEecCCC
Q psy12131 215 TQYEASVLAKNRFGWSRPSKA-YVFATEGA 243 (245)
Q Consensus 215 ~~y~~~v~a~N~~G~~~~s~~-~~~~t~~~ 243 (245)
..|.|.|+|.|..|.+.++.. -.++|.++
T Consensus 595 ~sylf~vRa~n~~Gis~Ps~~S~~vrta~a 624 (1281)
T KOG4222|consen 595 LSYLFLVRAENEQGISDPSTSSDPVRTAPA 624 (1281)
T ss_pred ceeeeeeeccccccccCCcccCCccccCCC
Confidence 999999999999998887763 34444443
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.74 E-value=3.5e-16 Score=117.95 Aligned_cols=127 Identities=20% Similarity=0.325 Sum_probs=91.9
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN 76 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 76 (245)
|+.... ++.|.|.+++.+|+|.|+|.+.|..|.. ....+.|.|.. +|.+ ..|....+..|..+.|.|.+.|.
T Consensus 170 r~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~ 247 (326)
T PHA02785 170 RLKQRT-PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLR 247 (326)
T ss_pred ceEecC-CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECC
Confidence 444443 3469999999999999999999987763 13345566652 4443 33456677889999999999988
Q ss_pred CCC---eEEEEECCEEeccCC-----cEEEEec--------CceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131 77 PPA---KVEWFRDGTAITLGG-----RIDMHVS--------SEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131 (245)
Q Consensus 77 ~~~---~~~w~~~~~~~~~~~-----~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 131 (245)
|.+ .+.|++++..+.... ++..... .....|.|.++..+|.|.|.|.|.|..|..
T Consensus 248 P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 248 PPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 864 899999998775421 2222110 013579999999999999999999987543
No 12
>KOG4194|consensus
Probab=99.73 E-value=4.7e-17 Score=125.65 Aligned_cols=142 Identities=22% Similarity=0.374 Sum_probs=119.8
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC-Ce
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-AK 80 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~ 80 (245)
+|+.+-++...+.|.|++.+|+|.|+|.|.|.+|. .++.+.|+|.+.|.+..+-....+..|+.+.|.|.+.+.|. |+
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr 738 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPR 738 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCcc
Confidence 57777888888999999999999999999999999 79999999999999999888888999999999999999888 99
Q ss_pred EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcc
Q psy12131 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 146 (245)
Q Consensus 81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~ 146 (245)
+.|++...++....+... ......+.+.+...+|.|.|+|...|..|.....+.+.+.+.+...
T Consensus 739 ~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~ 802 (873)
T KOG4194|consen 739 LEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCR 802 (873)
T ss_pred ccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcc
Confidence 999998887765543322 2234568888888999999999999999987777776665554433
No 13
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.72 E-value=4.3e-16 Score=95.76 Aligned_cols=89 Identities=21% Similarity=0.421 Sum_probs=78.4
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
||.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++..+|.|.|.|.+.|..
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 67777778788899999999999999999999999999998877667777666567899999999999999999999999
Q ss_pred ceeEEEEEE
Q psy12131 129 GSSQQFIQL 137 (245)
Q Consensus 129 g~~~~~~~~ 137 (245)
|.....+.|
T Consensus 83 G~~~~~~~l 91 (92)
T cd05747 83 GKQEAQFTL 91 (92)
T ss_pred CCEeEEEEe
Confidence 988877765
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=3.1e-16 Score=95.30 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=73.0
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.. ....|.|.++..+|.|.|.|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec----CCCEEEECcCChhhCEEEEEEEEcCC
Confidence 57777777788889999999999999999999999999877665433322 23479999999999999999999999
Q ss_pred ceeEEEEEEEe
Q psy12131 129 GSSQQFIQLSG 139 (245)
Q Consensus 129 g~~~~~~~~~~ 139 (245)
|.....+.|.+
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99888877765
No 15
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.71 E-value=1.5e-15 Score=93.31 Aligned_cols=90 Identities=24% Similarity=0.517 Sum_probs=82.2
Q ss_pred CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
|.|...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|.|.|+|.+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 56777788889999999999999999999999999999999998888888777899999999999999999999999999
Q ss_pred eeEEEEEEEe
Q psy12131 130 SSQQFIQLSG 139 (245)
Q Consensus 130 ~~~~~~~~~~ 139 (245)
.....+.|.+
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9888887754
No 16
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.69 E-value=1.9e-15 Score=92.81 Aligned_cols=84 Identities=19% Similarity=0.422 Sum_probs=71.8
Q ss_pred cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 134 (245)
|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|.|.|+|.+.|..|.....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 4456788999999999999999999999999998887776666543 345689999999999999999999999998888
Q ss_pred EEEEe
Q psy12131 135 IQLSG 139 (245)
Q Consensus 135 ~~~~~ 139 (245)
+.+.+
T Consensus 88 ~~v~v 92 (92)
T cd05737 88 VTVSV 92 (92)
T ss_pred EEEeC
Confidence 87753
No 17
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.68 E-value=3.2e-15 Score=90.28 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=70.8
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 456789999999999999999999999999988753 3566665556789999999999999999999999999888887
Q ss_pred EEe
Q psy12131 137 LSG 139 (245)
Q Consensus 137 ~~~ 139 (245)
|.+
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 753
No 18
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.68 E-value=5.8e-15 Score=97.98 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=83.2
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec-CC-CeEEEEECCE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKVEWFRDGT 88 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~w~~~~~ 88 (245)
++|.|.+++..|+|.|+|.+.+..+. ....+.|.|..+|.+...+.......|..+.|.|.+.|. |. +.+.|++++.
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 36999999999999999999987777 688899999999998777665555578899999999986 43 4899999875
Q ss_pred Eecc-----CC-cE--EEEe-cC---ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 89 AITL-----GG-RI--DMHV-SS---EKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 89 ~~~~-----~~-~~--~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
.... .. .. .... ++ -.+.|.+..-...+...|.|.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 3111 11 00 0111 11 12355555444445668999998754
No 19
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=1e-14 Score=89.29 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=68.6
Q ss_pred cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 135 (245)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|.|.|.|..|.....+
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 44555889999999999999999999999999877654443333334466899999999999999999999999988877
Q ss_pred EEE
Q psy12131 136 QLS 138 (245)
Q Consensus 136 ~~~ 138 (245)
.|.
T Consensus 87 ~L~ 89 (90)
T cd04972 87 QVT 89 (90)
T ss_pred EEe
Confidence 765
No 20
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=2.9e-15 Score=88.09 Aligned_cols=74 Identities=23% Similarity=0.457 Sum_probs=63.1
Q ss_pred CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+|+.+.|.|.+.|.|.|.+.|++++..+....+..+.. ...|.|.++..+|.|.|+|.|.|..|.....+.|.+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58899999999999999999999999887665544432 347999999999999999999999999888777653
No 21
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.64 E-value=6.7e-15 Score=91.25 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=69.0
Q ss_pred ceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 57 QWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
..+.+..|+++.|.|.+.| .|.|.+.|++++.++.......+.... ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 888999999999998865443332221 2478999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy12131 131 SQQFIQLSG 139 (245)
Q Consensus 131 ~~~~~~~~~ 139 (245)
....+.|.+
T Consensus 91 ~~~t~~L~V 99 (101)
T cd04975 91 KSLTFELYV 99 (101)
T ss_pred EEEEEEEEE
Confidence 888887765
No 22
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.64 E-value=1e-14 Score=85.91 Aligned_cols=74 Identities=22% Similarity=0.483 Sum_probs=65.2
Q ss_pred eEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 66 ~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
.+.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++...|.|.|+|.|.|..|.....+.|.+
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999999987777777766666789999999999999999999999999888887753
No 23
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=5.3e-15 Score=86.28 Aligned_cols=73 Identities=30% Similarity=0.391 Sum_probs=63.1
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+... ..|.|.++..+|.|.|.|.|.|..|....+..|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999999999999988776666666433 37999999999999999999999999888877753
No 24
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.63 E-value=1.9e-14 Score=89.35 Aligned_cols=91 Identities=23% Similarity=0.427 Sum_probs=71.1
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-----CcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 123 (245)
+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|.|.|.|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 466666665555666899999999999999999999988765432 233333334457899999999999999999
Q ss_pred EEeCCceeEEEEEEEe
Q psy12131 124 ASNNLGSSQQFIQLSG 139 (245)
Q Consensus 124 ~~n~~g~~~~~~~~~~ 139 (245)
|.|..|.....+.|.+
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999888877653
No 25
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.63 E-value=1e-14 Score=85.41 Aligned_cols=73 Identities=25% Similarity=0.486 Sum_probs=60.4
Q ss_pred EEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecC-ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ...+|.|.++..+|.|.|+|.|.|..|.......|.+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47899999999999999999998874 3456554432 3358999999999999999999999999888777653
No 26
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.61 E-value=2.2e-14 Score=88.82 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=67.0
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ....+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 346789999999999999999999999999887654 33332 223457999999999999999999999999888887
Q ss_pred EEec
Q psy12131 137 LSGI 140 (245)
Q Consensus 137 ~~~~ 140 (245)
|.+.
T Consensus 90 L~V~ 93 (95)
T cd05730 90 LKVF 93 (95)
T ss_pred EEEE
Confidence 7653
No 27
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=3.2e-14 Score=86.74 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++..+|.|.|.|.+.|..|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 444555666778899999999999999999999999877655443322 1345899999999999999999999999
Q ss_pred eeEEEEEEEe
Q psy12131 130 SSQQFIQLSG 139 (245)
Q Consensus 130 ~~~~~~~~~~ 139 (245)
.......|.+
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 9888777664
No 28
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=1.6e-14 Score=87.28 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=69.1
Q ss_pred eecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 133 (245)
..|....+..|+.+.|.|.+.|.|.|.+.|++++..+....++... ...|.|.++..+|.|.|+|.|.|..|....
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence 3455677889999999999999999999999999988766555442 347999999999999999999999999888
Q ss_pred EEEEEe
Q psy12131 134 FIQLSG 139 (245)
Q Consensus 134 ~~~~~~ 139 (245)
.+.|.+
T Consensus 80 ~~~l~V 85 (85)
T cd05728 80 SAELAV 85 (85)
T ss_pred EEEEEC
Confidence 877653
No 29
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.60 E-value=5.7e-14 Score=86.09 Aligned_cols=84 Identities=20% Similarity=0.429 Sum_probs=70.4
Q ss_pred cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 134 (245)
|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|+|.|.|.+.|..|.....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 4567788999999999999999999999999988776665554332 234579999999999999999999999999888
Q ss_pred EEEEe
Q psy12131 135 IQLSG 139 (245)
Q Consensus 135 ~~~~~ 139 (245)
+.|.+
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 88763
No 30
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=8.1e-14 Score=84.87 Aligned_cols=84 Identities=18% Similarity=0.394 Sum_probs=69.0
Q ss_pred eecceEEecCCCeEEEEEEEeecCCCeEEEEE-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee-
Q psy12131 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS- 131 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~- 131 (245)
..+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|..+..+|.|.|+|.|.|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 3445667889999999999999987 999998 5677766667777666666799999999999999999999999875
Q ss_pred EEEEEEE
Q psy12131 132 QQFIQLS 138 (245)
Q Consensus 132 ~~~~~~~ 138 (245)
.+++.|.
T Consensus 84 ~~~i~l~ 90 (92)
T cd05866 84 EATVVLE 90 (92)
T ss_pred EEEEEEE
Confidence 5566654
No 31
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=4.3e-14 Score=82.30 Aligned_cols=71 Identities=25% Similarity=0.427 Sum_probs=59.9
Q ss_pred eEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 66 ~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
++.|.|.+.|.|.|.+.|++++..+....++.+...+ .+.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 3789999999999999999999888766666554433 5788899999999999999999999888887753
No 32
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.59 E-value=7.4e-14 Score=85.89 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=66.9
Q ss_pred ecceEEecCCCeEEEEEEEeecCC-CeEEEEE-CCEEecc-CCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeCC-c
Q psy12131 55 EKQWIHTAPDMRAEIICNVYANPP-AKVEWFR-DGTAITL-GGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL-G 129 (245)
Q Consensus 55 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g 129 (245)
.|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..++.+.. .+..+.|.|.++..+|.|.|+|.|.|.. |
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 344556889999999999999985 7999998 7766554 33444432 2335789999999999999999999996 8
Q ss_pred eeEEEEEEEe
Q psy12131 130 SSQQFIQLSG 139 (245)
Q Consensus 130 ~~~~~~~~~~ 139 (245)
....++.|.+
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8888887765
No 33
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.59 E-value=4.7e-14 Score=83.81 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=62.3
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 135 (245)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.|..|......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 678999999999999999999998888766666666666667899999999999999999999999766543
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.59 E-value=2.1e-14 Score=81.70 Aligned_cols=65 Identities=25% Similarity=0.469 Sum_probs=55.0
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++..+... ...+.|.|.++..+|.|.|+|.|.|..|....++.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 468999999999999999999988632 13458999999999999999999999997777666553
No 35
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=7.9e-14 Score=86.69 Aligned_cols=89 Identities=25% Similarity=0.472 Sum_probs=68.7
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEecc-----CCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAITL-----GGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 121 (245)
+|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|++. +..+.. ..++.+........|.|.++..+|.|.|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 466544 4467788999999999999999999999984 433321 23444443334568999999999999999
Q ss_pred EEEEeCCceeEEEEEEE
Q psy12131 122 CQASNNLGSSQQFIQLS 138 (245)
Q Consensus 122 C~~~n~~g~~~~~~~~~ 138 (245)
|.|.|..|.....+.|.
T Consensus 81 C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 81 CEAASRIGGHQKSMYLD 97 (98)
T ss_pred EEEeccCCcceeEEEEe
Confidence 99999999888777664
No 36
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=4.8e-14 Score=82.63 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=59.7
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecC-ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++..+... .++.+...+ ....|.|.++..+|.|.|+|.|.|..|....+..|.+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 478999999999999999999888653 345554332 2347999999999999999999999999888877653
No 37
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.58 E-value=7.7e-14 Score=86.63 Aligned_cols=89 Identities=26% Similarity=0.460 Sum_probs=69.5
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-----CcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 123 (245)
+|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|.|.|.|.
T Consensus 2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 466643 33566789999999999999999999999988655432 233333334457899999999999999999
Q ss_pred EEeCCceeEEEEEEE
Q psy12131 124 ASNNLGSSQQFIQLS 138 (245)
Q Consensus 124 ~~n~~g~~~~~~~~~ 138 (245)
|.|..|.....+.|.
T Consensus 81 a~N~~G~~~~s~~l~ 95 (96)
T cd05732 81 ASNRIGGDQQSMYLE 95 (96)
T ss_pred EEeCCCCcEEEEEEe
Confidence 999999988877665
No 38
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=5.2e-14 Score=82.53 Aligned_cols=73 Identities=26% Similarity=0.371 Sum_probs=62.6
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+... ..|.|.++..+|.|.|.|.+.|..|.....+.|.+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999998876666655332 36999999999999999999999999888877653
No 39
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=1.3e-13 Score=83.72 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=63.0
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEe----cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHV----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
|+.+.|.|.+.|.|++.+.|++++..+... .++.+.. ....+.|.|.++...|.|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 688999999999999999999999877543 3454432 12236899999999999999999999999988877777
Q ss_pred ec
Q psy12131 139 GI 140 (245)
Q Consensus 139 ~~ 140 (245)
+.
T Consensus 81 V~ 82 (88)
T cd05735 81 VQ 82 (88)
T ss_pred Ee
Confidence 64
No 40
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.57 E-value=1.4e-13 Score=87.05 Aligned_cols=95 Identities=20% Similarity=0.437 Sum_probs=70.7
Q ss_pred ecCCeEEeecce--EEe--cCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEE--ec--CceeEEEEccCC-CCC
Q psy12131 47 IYPPEVSVEKQW--IHT--APDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMH--VS--SEKHSLLVRHIK-DTD 116 (245)
Q Consensus 47 ~~~p~~~~~~~~--~~~--~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~--~~--~~~~~l~i~~~~-~~d 116 (245)
..+|.+...+.. +.. ..|..+.|.|.+.|.|.+.+.|++++..+.. +.++.+. .. ...+.|.|.++. .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 346666555542 211 3568999999999999999999999988764 3344322 11 124689999987 589
Q ss_pred CeEEEEEEEeCCceeEEEEEEEecC
Q psy12131 117 FGNYMCQASNNLGSSQQFIQLSGIP 141 (245)
Q Consensus 117 ~g~y~C~~~n~~g~~~~~~~~~~~~ 141 (245)
.|.|.|.|.|..|.....+.|.+..
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecC
Confidence 9999999999999998888888763
No 41
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.57 E-value=7.9e-14 Score=86.60 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=67.3
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec------CceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS------SEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 131 (245)
...+..|+.+.|.|.+.|.|.|.+.|++++.++........... ...+.|.|..+..+|.|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 55677899999999999999999999999999876543322111 124689999999999999999999999998
Q ss_pred EEEEEEEe
Q psy12131 132 QQFIQLSG 139 (245)
Q Consensus 132 ~~~~~~~~ 139 (245)
..++.|.+
T Consensus 92 ~~t~~l~V 99 (101)
T cd05859 92 SYTFALQI 99 (101)
T ss_pred EEEEEEEE
Confidence 88877765
No 42
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.57 E-value=1.5e-13 Score=83.30 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=66.0
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEE-EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
...+..|+.+.|.|.+.|.|.|.+.|++++..+....... .........|.|.++..+|.|.|+|.+.|..|.....+.
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 3457789999999999999999999999998887554321 111223457899999999999999999999999888887
Q ss_pred EEe
Q psy12131 137 LSG 139 (245)
Q Consensus 137 ~~~ 139 (245)
|.+
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 753
No 43
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=7.7e-14 Score=82.30 Aligned_cols=74 Identities=19% Similarity=0.428 Sum_probs=59.9
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
|+.+.|.|.+.|.|.|++.|++++.++...... .... ....|.|.++...|.|.|.|.|.|..|.....+.+.+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999987643221 1111 2247889999999999999999999999988887765
No 44
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.56 E-value=1.3e-13 Score=81.08 Aligned_cols=72 Identities=25% Similarity=0.445 Sum_probs=59.2
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+.|.|.+.|.|.|.+.|++++..+... .++.+... .....|.|..+..+|.|.|+|.|.|..|.......|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 478999999999999999999988743 45554433 2344799999999999999999999999988877664
No 45
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=1.2e-13 Score=81.61 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=60.1
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCC---cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
|+.+.|.|.+.|.|.|.+.|++++..+.... ++.. ....|.|.+++.+|.|.|.|.|.|..|.....+.|.+
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999999999999998876532 2222 2347999999999999999999999999888777765
No 46
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.55 E-value=5.6e-14 Score=81.37 Aligned_cols=68 Identities=26% Similarity=0.569 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~ 137 (245)
+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++..+|.|.|.|.|.|..|.....+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4789999999999999999998887666655532 3479999999999999999999999998877665
No 47
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.55 E-value=2.9e-13 Score=84.82 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=65.8
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC----C-cEEEEecCceeEEEEc--cCCCCCCeEEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----G-RIDMHVSSEKHSLLVR--HIKDTDFGNYM 121 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~----~-~~~~~~~~~~~~l~i~--~~~~~d~g~y~ 121 (245)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... . .......+....+.+. .+..+|.|.|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 577777777888999999999999999999999999999887651 1 1122222222222332 23678999999
Q ss_pred EEEEeCCce-eEEEEEEEe
Q psy12131 122 CQASNNLGS-SQQFIQLSG 139 (245)
Q Consensus 122 C~~~n~~g~-~~~~~~~~~ 139 (245)
|.+.|..|. ....+.|.+
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555555543
No 48
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.54 E-value=9.1e-14 Score=80.80 Aligned_cols=69 Identities=23% Similarity=0.505 Sum_probs=57.3
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++..+....++.. ....|.|.++..+|+|.|+|.+.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 46899999999999999999998876644322 3457999999999999999999999998777666553
No 49
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.54 E-value=1.5e-13 Score=81.47 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
|+.+.|.|.+.|.|.|.+.|++++..+....... ........|.|.++...|.|.|.|.|.|..|.....+.|.+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999999999999999998876543221 11223468999999999999999999999999888877765
No 50
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.53 E-value=1.9e-13 Score=81.29 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=57.4
Q ss_pred EEEEEeecCCCeEEEEECCEEeccCCcEEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 69 l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
|.|.+.|.|.|.+.|++++..+.......... ....+.|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 68999999999999999999887665432211 12355799999999999999999999999988887764
No 51
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.53 E-value=1.4e-13 Score=80.15 Aligned_cols=70 Identities=20% Similarity=0.390 Sum_probs=57.0
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++..+..... .. ......|.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999999876654322 11 123458999999999999999999999999888887764
No 52
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=3.4e-13 Score=77.76 Aligned_cols=68 Identities=22% Similarity=0.441 Sum_probs=54.9
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~ 137 (245)
|..+.|.|.+.|.|.|.+.|++++..+.....+.. ....|.|.++. |.|.|+|.|.|..|....+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999988765443322 23468888874 7899999999999988777655
No 53
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.52 E-value=2.4e-13 Score=79.89 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=56.9
Q ss_pred EEEEEeecCCCeEEEEECCEEeccCCcEEE--Ee---cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 69 IICNVYANPPAKVEWFRDGTAITLGGRIDM--HV---SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 69 l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~---~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
|.|.+.|.|.|.+.|++++..+........ .. ....+.|.|..+...|.|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 679999999999999999999976654321 11 12346899999999999999999999999988877653
No 54
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=6.8e-13 Score=79.94 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=61.2
Q ss_pred CeEEEEEEEeecCCC--eEEEEECCEEeccC---CcEEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 65 MRAEIICNVYANPPA--KVEWFRDGTAITLG---GRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 65 ~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+++.|.|.+.|.|.| .+.|++++..+... .++.+ ......+.|.|.+++..|.|.|+|.|.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 68999999887543 23322 2222346899999999999999999999999999988887
Q ss_pred ecC
Q psy12131 139 GIP 141 (245)
Q Consensus 139 ~~~ 141 (245)
+..
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 763
No 55
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.51 E-value=2.1e-13 Score=78.61 Aligned_cols=67 Identities=24% Similarity=0.503 Sum_probs=54.5
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+.|.|.+.|.|.|.+.|++++.++.....+ . ....|.|.++..+|.|.|+|.|.|..|......++.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 368999999999999999999988764332 1 234799999999999999999999999766655443
No 56
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.50 E-value=1.2e-12 Score=80.58 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=59.8
Q ss_pred CeEEeecceEEec---CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCC-CCCCeEEEEEEE
Q psy12131 50 PEVSVEKQWIHTA---PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQAS 125 (245)
Q Consensus 50 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~ 125 (245)
|.+...|..+.+. .|+.+.|.|.+.|.|.|.+.|++++..+.......... ....|.|.++. ..|.|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--IDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--eCCeEEEccCCccCcCEEEEEEEE
Confidence 4444445444333 47899999999999999999999999886443222221 12368888874 689999999999
Q ss_pred eCCceeEE
Q psy12131 126 NNLGSSQQ 133 (245)
Q Consensus 126 n~~g~~~~ 133 (245)
|..|....
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99997643
No 57
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.50 E-value=1.1e-12 Score=81.52 Aligned_cols=88 Identities=22% Similarity=0.490 Sum_probs=68.9
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccC--CcEEEEec----CceeEEEEccCCCCC-CeEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNY 120 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y 120 (245)
||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... +..+.|.|.++..+| .|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 566544 445667899999999999999999 69999999877643 35555432 234689999999955 8999
Q ss_pred EEEEEeCCceeEEEEEE
Q psy12131 121 MCQASNNLGSSQQFIQL 137 (245)
Q Consensus 121 ~C~~~n~~g~~~~~~~~ 137 (245)
.|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999988877765
No 58
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.49 E-value=4.7e-13 Score=79.18 Aligned_cols=74 Identities=22% Similarity=0.417 Sum_probs=60.0
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
+.|.|.+.|.|.|.+.|++++..+.......+........|.|.++...|.|.|+|.+.|..|.....+.|.+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 36899999999999999999988765433333233344579999999999999999999999998888887764
No 59
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.49 E-value=5.2e-13 Score=79.44 Aligned_cols=77 Identities=17% Similarity=0.400 Sum_probs=63.2
Q ss_pred ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
....+.+|+.+.|.|.+.+. .+.+.|++++.++....++.+. ...|.|.++..+|.|.|+|.+.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 34567899999999999885 5689999999988776665543 237999999999999999999999888777666
Q ss_pred EE
Q psy12131 137 LS 138 (245)
Q Consensus 137 ~~ 138 (245)
+.
T Consensus 77 v~ 78 (79)
T cd04973 77 VN 78 (79)
T ss_pred Ee
Confidence 54
No 60
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=9.9e-13 Score=77.37 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=59.1
Q ss_pred CCeEEEEEEEeecCCCeEEEEE-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 64 DMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..... ...|.|..+...|.|.|+|.|.|..|.....+.|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 566665544444332 247999999999999999999999999888777653
No 61
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.48 E-value=1.1e-12 Score=80.07 Aligned_cols=78 Identities=17% Similarity=0.393 Sum_probs=62.1
Q ss_pred ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EE
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FI 135 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~ 135 (245)
....+.+|+.+.|.|.+.|. .|.+.|++++..+... ++.+. .....|.|.++..+|.|.|.|.|.|..|.... .+
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 35578899999999999999 9999999999887643 33332 23457999999999999999999999987443 44
Q ss_pred EEE
Q psy12131 136 QLS 138 (245)
Q Consensus 136 ~~~ 138 (245)
.|.
T Consensus 87 ~L~ 89 (91)
T cd05740 87 ILN 89 (91)
T ss_pred EEE
Confidence 444
No 62
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.48 E-value=4.7e-12 Score=90.21 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=101.4
Q ss_pred ceEEecCCCeEEEEEEEeecC-----------CCeEEEEECCEEe--cc-CCc---EEEE-e--cCceeEEEEccCCCCC
Q psy12131 57 QWIHTAPDMRAEIICNVYANP-----------PAKVEWFRDGTAI--TL-GGR---IDMH-V--SSEKHSLLVRHIKDTD 116 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~-----------~~~~~w~~~~~~~--~~-~~~---~~~~-~--~~~~~~l~i~~~~~~d 116 (245)
..+.+.+|+++.|.|.+.+.+ .+++.|++++... .. +.+ ..+. . ......|.|.++..+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 346678999999999987643 3589999987542 11 111 0000 0 1123589999999999
Q ss_pred CeEEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCC----CCceEEEEEEEeec--CCCCeEEEe
Q psy12131 117 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY----SGIIQYLLKFRERE--ELTPWRNIV 190 (245)
Q Consensus 117 ~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~ 190 (245)
.|.|.|.+.|..+.....+.|.+.+.+. ......+..+.|.|.+.++ .|...+ .||++.. ..... +.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~----~~~~~~G~~v~L~C~~~~~~~~~~p~p~I-~WyKng~~l~~~~r--~~ 182 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGTI----NYQFNSGKDSKLHCYGTDGISSTFKDYTL-TWYKNGNIVLYTDR--IQ 182 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCCc----cceEecCCCEEEEeeCCCCccccCCCceE-EEEECCEECCCCCC--EE
Confidence 9999999999888877888777754321 1234568899999997432 122233 3555543 11111 11
Q ss_pred eCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131 191 IPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227 (245)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~ 227 (245)
..... ..+.|.++...+.+.|+|.|....
T Consensus 183 ~~~~~--------~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 183 LRNNN--------STLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EeCCC--------CEEEECcCCHHhCEEEEEEEEEeE
Confidence 11111 468899999999999999998864
No 63
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.47 E-value=3.2e-12 Score=78.32 Aligned_cols=84 Identities=19% Similarity=0.384 Sum_probs=63.4
Q ss_pred eecceEEecCCCeEEEEEEEeecCCCeEEEEE-CCEEeccCCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEEeCCc-e
Q psy12131 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLG-S 130 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~ 130 (245)
..|....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+..+. .....+.|+|.++..+|.|.|.|.|.|..| .
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 345567788999999999999986 5999997 56655543444333 333457899999999999999999999864 4
Q ss_pred eEEEEEEE
Q psy12131 131 SQQFIQLS 138 (245)
Q Consensus 131 ~~~~~~~~ 138 (245)
...++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 55566554
No 64
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.47 E-value=1.3e-12 Score=77.27 Aligned_cols=71 Identities=31% Similarity=0.553 Sum_probs=55.8
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE--EEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~~~~~~ 139 (245)
++|.|.+.|.|.|.+.|++++..+.... .+.+.. ....|.|.++..+|.|.|.|.+.|..|... ..++|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4789999999999999999999876543 333322 235899999999999999999999999753 3555554
No 65
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.46 E-value=7.1e-13 Score=78.16 Aligned_cols=71 Identities=25% Similarity=0.463 Sum_probs=55.2
Q ss_pred EEEEEEEeecCCCeEEEEECCEEe-cc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAI-TL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~-~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++... .. ..++.+.. ....|.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP--EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec--CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 368999999999999999987532 22 22333322 2347999999999999999999999999888777765
No 66
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=1.9e-12 Score=78.28 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=60.1
Q ss_pred CeEEEEEEEeecCCC--eEEEEECCEEeccCC---cEE-EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 65 MRAEIICNVYANPPA--KVEWFRDGTAITLGG---RID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 65 ~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+.+.|.|.+.|.|.| .+.|++++..+.... .+. .......+.|.|.+++..|.|.|+|.|.|..|.......|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468899999999887 679999998875432 221 22222456899999999999999999999999888888877
Q ss_pred ecC
Q psy12131 139 GIP 141 (245)
Q Consensus 139 ~~~ 141 (245)
+..
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 763
No 67
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.45 E-value=1.7e-12 Score=78.05 Aligned_cols=78 Identities=22% Similarity=0.439 Sum_probs=62.7
Q ss_pred EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+....|+.+.|.|.+.|.|.|.+.|++++..+....... .......|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 445679999999999999999999999988765433221 122346899999999999999999999999887777664
No 68
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.45 E-value=1.2e-12 Score=76.39 Aligned_cols=70 Identities=23% Similarity=0.473 Sum_probs=56.6
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
+.|.|.+.|.|.|.+.|++++..+.... ... ......|.|.++...|.|.|+|.|.|..|.....+.|.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999999999999999887665432 211 123458999999999999999999999999888887765
No 69
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.45 E-value=6.7e-12 Score=77.24 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=59.3
Q ss_pred CeEEeecceEEecC---CCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccCC-CCCCeEEEEE
Q psy12131 50 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIK-DTDFGNYMCQ 123 (245)
Q Consensus 50 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~ 123 (245)
|.+...|....+.+ |+.+.|.|.+.|.|.|.+.|++++..+.... ++.+. ...|.|.++. ..|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV----AGNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE----CCeEEEccCCccCcCEEEEEE
Confidence 44555555554444 4689999999999999999999998886432 33332 2368887765 5899999999
Q ss_pred EEeCCceeEE
Q psy12131 124 ASNNLGSSQQ 133 (245)
Q Consensus 124 ~~n~~g~~~~ 133 (245)
|.|..|....
T Consensus 78 A~N~~G~~~s 87 (94)
T cd05850 78 AINRCGTVVS 87 (94)
T ss_pred EEcCcCcEEE
Confidence 9999997654
No 70
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.44 E-value=1.1e-12 Score=75.92 Aligned_cols=68 Identities=28% Similarity=0.569 Sum_probs=55.7
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+.|.|.+.|.|.|.+.|++++..+.. .++.+. ....|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 47899999999999999998776543 334443 234799999999999999999999999888877765
No 71
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.44 E-value=2e-12 Score=79.01 Aligned_cols=76 Identities=25% Similarity=0.538 Sum_probs=57.3
Q ss_pred CCeEEEEEEEeecCCCeEEEEEC----CEEeccCCc--EEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRD----GTAITLGGR--IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
|+.+.|.|.+.|.|.|.+.|+++ +..+..... ..+.. ....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 343332221 11111 112368999999999999999999999998
Q ss_pred eEEEEEEEe
Q psy12131 131 SQQFIQLSG 139 (245)
Q Consensus 131 ~~~~~~~~~ 139 (245)
......|.+
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888777665
No 72
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.44 E-value=4.4e-12 Score=77.70 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=58.6
Q ss_pred CeEEeecceEEecC---CCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCC-CCCCeEEEEEE
Q psy12131 50 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQA 124 (245)
Q Consensus 50 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~ 124 (245)
|.+...|....+.+ +..+.|.|.+.|.|.|.+.|++++..+.. ..++.+. ...|.|.++. ..|.|.|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCCCCEEEEEEE
Confidence 44444444443333 45799999999999999999999988753 3344332 2478998875 58999999999
Q ss_pred EeCCceeEE
Q psy12131 125 SNNLGSSQQ 133 (245)
Q Consensus 125 ~n~~g~~~~ 133 (245)
.|..|....
T Consensus 78 ~N~~G~~~s 86 (93)
T cd05849 78 SNIYGKVRS 86 (93)
T ss_pred EeCcceEEE
Confidence 999987644
No 73
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.44 E-value=2.2e-12 Score=75.75 Aligned_cols=69 Identities=28% Similarity=0.580 Sum_probs=54.0
Q ss_pred EEEEEEEeecCCCeEEEEECCEEecc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLS 138 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~~~ 138 (245)
+.|.|.+.|.|.|.+.|++++..+.. ..++... ....|.|.++..+|.|.|.|.|.|..|.. .....|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 46899999999999999999988763 3344332 23469999999999999999999999874 3444444
No 74
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.44 E-value=1.5e-12 Score=76.93 Aligned_cols=70 Identities=21% Similarity=0.471 Sum_probs=56.4
Q ss_pred EEEEEEEee-cCCCeEEEEECCEEeccCCcEE---EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRID---MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
+.|.|.+.| .|.|.+.|++++..+....... +........|.|..+..+|.|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 8999999999998886544322 333344678999999999999999999999998766653
No 75
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.43 E-value=2e-12 Score=79.02 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=59.1
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEec--------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 135 (245)
|+.+.|.|.+.|.|.|.+.|++++.... ...++.+.. ...|.|.++..+|.|.|.|.+.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999875421 123344322 34799999999999999999999999988877
Q ss_pred EEEec
Q psy12131 136 QLSGI 140 (245)
Q Consensus 136 ~~~~~ 140 (245)
.|.+.
T Consensus 78 ~l~V~ 82 (90)
T cd05726 78 YLEVT 82 (90)
T ss_pred EEEEe
Confidence 77764
No 76
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.43 E-value=2.5e-12 Score=76.36 Aligned_cols=71 Identities=15% Similarity=0.384 Sum_probs=56.6
Q ss_pred ecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131 55 EKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 55 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 133 (245)
.|..+.+..|+.+.|.|.+.|.|.| .+.|++++.++.... ....+.|.|..+. |.|.|.|.|.|..|....
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 4556788999999999999999999 799999998876411 1133578888764 789999999999996544
No 77
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.42 E-value=3.2e-12 Score=76.22 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=59.6
Q ss_pred CeEEEEEEEeecC--CCeEEEEECCEEecc---CCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 65 MRAEIICNVYANP--PAKVEWFRDGTAITL---GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 65 ~~~~l~C~~~~~~--~~~~~w~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
+++.|.|.+.+.+ .+.+.|++++..+.. ..++.+... ...+.|.|.+++..|.|.|+|.|.|..+....+..|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 3688999998744 678999999999863 224433211 2345899999999999999999999999988888877
Q ss_pred ec
Q psy12131 139 GI 140 (245)
Q Consensus 139 ~~ 140 (245)
+.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 76
No 78
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.42 E-value=4.7e-12 Score=76.86 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=60.1
Q ss_pred cceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131 56 KQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 132 (245)
|....+..|+.+.|.|.+ .|.|.|.+.|++++..+.. ..++.+.. ...|.|.++...|.|.|.|.+.|..|...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 345667899999999998 7889999999999988765 33343332 34799999999999999999999988654
No 79
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.41 E-value=6.4e-12 Score=77.68 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=59.9
Q ss_pred ecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCc--EEEEecCceeEEEEccC-----CCCCCeEEEEEEEeC
Q psy12131 55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHI-----KDTDFGNYMCQASNN 127 (245)
Q Consensus 55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~ 127 (245)
.|....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..+... ..+.|..+ ...|.|.|.|.+.|.
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 44556677899999999999999999999999988765432 222222 24556555 578999999999999
Q ss_pred -Ccee-EEEEEEE
Q psy12131 128 -LGSS-QQFIQLS 138 (245)
Q Consensus 128 -~g~~-~~~~~~~ 138 (245)
.|.. ...+.|.
T Consensus 82 ~~G~~~s~~~~l~ 94 (95)
T cd05722 82 SLGSIVSRTARLT 94 (95)
T ss_pred ccCcEEEeeeEEe
Confidence 8875 3455443
No 80
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.40 E-value=1.6e-11 Score=75.20 Aligned_cols=88 Identities=25% Similarity=0.482 Sum_probs=69.4
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccC--CcEEEEec----CceeEEEEccCCCCC-CeEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNY 120 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y 120 (245)
||.+ ..+....+.+|+.+.|.|.+.+.|.| .+.|.+++..+... .++.+... +..+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5655 45556778899999999999888887 67888877665443 46666443 467899999998877 6899
Q ss_pred EEEEEeCCceeEEEEEE
Q psy12131 121 MCQASNNLGSSQQFIQL 137 (245)
Q Consensus 121 ~C~~~n~~g~~~~~~~~ 137 (245)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998887765
No 81
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=4e-12 Score=75.03 Aligned_cols=67 Identities=22% Similarity=0.490 Sum_probs=48.6
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC----CCCeEEEEEEEeCCceeEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~ 133 (245)
+.|.|.+.|.|.|++.|++++..+..............+.|.|..+.. .|.|.|.|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999999999999999876433222222222334677777664 3789999999999997554
No 82
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.40 E-value=4.4e-12 Score=77.42 Aligned_cols=76 Identities=24% Similarity=0.491 Sum_probs=56.3
Q ss_pred CCeEEEEEEEeecCCCeEEEEECC----EEeccCCc--EEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDG----TAITLGGR--IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~----~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
|+.+.|.|.+.|.|.|.+.|++++ ..+..... ..... .+....|.|.++..+|.|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999853 22221111 11111 122347999999999999999999999998
Q ss_pred eEEEEEEEe
Q psy12131 131 SQQFIQLSG 139 (245)
Q Consensus 131 ~~~~~~~~~ 139 (245)
...++.|.+
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888777765
No 83
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.39 E-value=2.5e-12 Score=76.09 Aligned_cols=67 Identities=27% Similarity=0.540 Sum_probs=49.9
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC----CCCeEEEEEEEeCCceeEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~ 133 (245)
+.|.|.+.|.|.|.+.|++++..+.......+........|.|..+.. +|.|.|.|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 468999999999999999999887543222222222345788887753 6899999999999986543
No 84
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.39 E-value=4.9e-12 Score=73.03 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=51.0
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 135 (245)
+.|.|.+.|.|.|++.|++++.++... ..+.. . ...|.|.++..+|+|.|+|.+.|.........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 368999999999999999999887654 23322 2 24799999999999999999999865444433
No 85
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=5e-12 Score=75.83 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCE---Ee--ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGT---AI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~---~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~ 138 (245)
|+.+.|.|.+.|.|.|.+.|+++.. .. ................|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6789999999999999999999632 11 111100000111235799999999999999999999999988888775
Q ss_pred e
Q psy12131 139 G 139 (245)
Q Consensus 139 ~ 139 (245)
+
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 3
No 86
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.37 E-value=4.3e-12 Score=77.79 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=61.0
Q ss_pred eEEecCCCeEEEEEEEee-----cCCCeEEEEECCEEeccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 58 WIHTAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~-----~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
...+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ....+.. ....|.|.++..+|.|.|.|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 445668999999999998 688899999988654321 1122222 2357999999999999999999999998
Q ss_pred eEEEEEEE
Q psy12131 131 SQQFIQLS 138 (245)
Q Consensus 131 ~~~~~~~~ 138 (245)
....+.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 88877765
No 87
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.37 E-value=8.6e-12 Score=73.61 Aligned_cols=65 Identities=28% Similarity=0.529 Sum_probs=48.6
Q ss_pred EEEEEEEeecCCCeEEEEECCEEecc--CCcEEEEecCceeEEEEccCCC----CCCeEEEEEEEeCCceeEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~ 133 (245)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+. .....|.|..+.. .|.|.|.|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 46899999999999999999987642 3344332 2345788887642 3689999999999997554
No 88
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.33 E-value=1.4e-11 Score=72.62 Aligned_cols=67 Identities=22% Similarity=0.589 Sum_probs=54.6
Q ss_pred CeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
|.+...|....+.+|+.++|.|.+.+.|.+ .+.|++++..+.. ....|.|.++ .+|.|.|.|.+.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 445566777788899999999999987764 7999999987632 2346889888 99999999999986
No 89
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.32 E-value=1e-10 Score=70.74 Aligned_cols=80 Identities=23% Similarity=0.476 Sum_probs=63.8
Q ss_pred EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137 (245)
Q Consensus 59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~ 137 (245)
+.+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4566899999999999999999999999887765443332 122334578999999999999999999999988777766
Q ss_pred E
Q psy12131 138 S 138 (245)
Q Consensus 138 ~ 138 (245)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 90
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.32 E-value=3.1e-11 Score=71.32 Aligned_cols=70 Identities=21% Similarity=0.492 Sum_probs=54.3
Q ss_pred EEEEEEEee-cCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 67 AEIICNVYA-NPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
+.|.|.+.+ .|.+.+.|++++..+.... ++.+......+.|.|.++...|.|.|.|.+.|..|....+++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999875 5778999999998775321 233333345678999999999999999999999998777654
No 91
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.30 E-value=7.1e-11 Score=71.00 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=56.0
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc--eeEEEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL 137 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g--~~~~~~~~ 137 (245)
|+++.|.|.+.+.|.+.+.|++.+....... ...+......+.|.|.+++.+|.|.|.|.+.|..+ ...+++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999999999999998665322111 11111122357899999999999999999999775 56666666
Q ss_pred Eec
Q psy12131 138 SGI 140 (245)
Q Consensus 138 ~~~ 140 (245)
.+.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 653
No 92
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=1.2e-10 Score=71.38 Aligned_cols=80 Identities=23% Similarity=0.416 Sum_probs=56.9
Q ss_pred CeEEeecceEEec---CCCeEEEEEEEeecCCCeEEEEECCEEeccC--CcEEEEecCceeEEEEccCC-CCCCeEEEEE
Q psy12131 50 PEVSVEKQWIHTA---PDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQ 123 (245)
Q Consensus 50 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~ 123 (245)
|.+...+....+. .+..+.|.|.+.|.|.|.+.|++++..+... ..+... ...|.|.++. ..|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV----GGNLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE----CCEEEEecCCccCCCEEEEEE
Confidence 3344444444332 3467999999999999999999999887432 233321 2368888776 4899999999
Q ss_pred EEeCCceeEE
Q psy12131 124 ASNNLGSSQQ 133 (245)
Q Consensus 124 ~~n~~g~~~~ 133 (245)
|.|..|....
T Consensus 78 a~N~~G~~~S 87 (91)
T cd04967 78 ASNIVGTVLS 87 (91)
T ss_pred EEcCCCEEEe
Confidence 9999986543
No 93
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.29 E-value=4.1e-11 Score=72.25 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCeEEEEEEEeec--CCCeEEEEECCEEeccCCc-----EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 64 DMRAEIICNVYAN--PPAKVEWFRDGTAITLGGR-----IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 64 g~~~~l~C~~~~~--~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
|+.+.|.|.+.+. |.+.+.|.+.+..+..... .........+.|.|.+++.+|.|.|.|.+.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999999 7889999886654322111 11111123568999999999999999999999988777766
Q ss_pred EEe
Q psy12131 137 LSG 139 (245)
Q Consensus 137 ~~~ 139 (245)
|.+
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 653
No 94
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.28 E-value=5e-11 Score=70.96 Aligned_cols=68 Identities=29% Similarity=0.639 Sum_probs=50.0
Q ss_pred EEEEEEEeecCCCeEEEEECCEEe-c-------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee-EEEEEE
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAI-T-------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQL 137 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~-~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~~ 137 (245)
+.|.|.+.|.|.|.+.|++++... . ...++.+. ....|.|.++..+|.|.|.|.|.|..|.. .+.+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 478999999999999999864321 1 12233332 23579999999999999999999999865 444444
No 95
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.26 E-value=7e-11 Score=71.43 Aligned_cols=76 Identities=24% Similarity=0.443 Sum_probs=60.3
Q ss_pred cceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131 56 KQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 134 (245)
|....+..|+.++|.|.+.+ .|.+.+.|++++..+.... . .....|.|..+..+|.|.|.|.+.|..|.....
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 44567889999999999975 6778999999886543221 1 123579999999999999999999999988877
Q ss_pred EEE
Q psy12131 135 IQL 137 (245)
Q Consensus 135 ~~~ 137 (245)
..|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 655
No 96
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.22 E-value=2.6e-10 Score=68.34 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=54.8
Q ss_pred cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
|....+..|+++.|.|.+. .+.+.+.|++++.++... .++.+. . ..|.|.+++.+|.|.|.|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~-~---~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY-R---DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE-C---CcEEEeCCCHHHCEEEEEEEEecc
Confidence 4456788999999999985 467899999999998765 344332 2 359999999999999999999864
No 97
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.21 E-value=4.6e-10 Score=69.04 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=54.7
Q ss_pred ceEEecCCCeEEEEEEEeecCCCeEEEEECC--------EEeccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDG--------TAITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--------~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
..+.+.+|+.+.|.|.+.+.|.+.+.|++.+ .......++.+.. ......|.|.+++.+|.|.|.|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 4567889999999999999999999998632 1122234554432 234578999999999999999999984
Q ss_pred C
Q psy12131 128 L 128 (245)
Q Consensus 128 ~ 128 (245)
.
T Consensus 85 ~ 85 (95)
T cd07701 85 P 85 (95)
T ss_pred c
Confidence 3
No 98
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.18 E-value=2.7e-10 Score=69.39 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=57.6
Q ss_pred EEecCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131 59 IHTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 59 ~~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 133 (245)
..+..|....|.|...+. |.|.+.|++++.++....... . ....|.|.++..+|.|.|+|.+.|..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 456789999999987532 567999999999887654332 2 3458999999999999999999998876555
Q ss_pred EEE
Q psy12131 134 FIQ 136 (245)
Q Consensus 134 ~~~ 136 (245)
.++
T Consensus 81 ~~t 83 (92)
T cd05757 81 NVT 83 (92)
T ss_pred EEE
Confidence 443
No 99
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.17 E-value=1.8e-09 Score=66.19 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=53.7
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECCEEe--------ccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEe
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASN 126 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n 126 (245)
...+..|+.+.|.|.+.+.|.|.+.|++.+..+ ....++.+... .....|.|.++..+|.|.|+|.+..
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 456789999999999999999999998866432 12234443222 2357899999999999999999997
No 100
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.16 E-value=3.3e-10 Score=69.06 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=59.3
Q ss_pred cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC-ce
Q psy12131 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-GS 130 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~ 130 (245)
+..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ++... ...|.|.++..+|.|.|.|.+.+.. +.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT----EDGLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc----CCCEEEccCCHHHCEEEEEEEecCccce
Confidence 34566788999999999976 778999999987665432 22221 2358999999999999999998754 44
Q ss_pred eEEEEEEEec
Q psy12131 131 SQQFIQLSGI 140 (245)
Q Consensus 131 ~~~~~~~~~~ 140 (245)
...++.|.+.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 5556666553
No 101
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.13 E-value=5.4e-09 Score=62.98 Aligned_cols=82 Identities=24% Similarity=0.538 Sum_probs=65.3
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEEC-CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 34567899999999999887889999998 77776555666555544678999999999999999999988776665555
Q ss_pred EEe
Q psy12131 137 LSG 139 (245)
Q Consensus 137 ~~~ 139 (245)
+.+
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 543
No 102
>smart00409 IG Immunoglobulin.
Probab=99.13 E-value=5.4e-09 Score=62.98 Aligned_cols=82 Identities=24% Similarity=0.538 Sum_probs=65.3
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEEC-CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 34567899999999999887889999998 77776555666555544678999999999999999999988776665555
Q ss_pred EEe
Q psy12131 137 LSG 139 (245)
Q Consensus 137 ~~~ 139 (245)
+.+
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 543
No 103
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.09 E-value=1.2e-09 Score=65.49 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=51.6
Q ss_pred EEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 59 IHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 59 ~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
..+.+|+.++|.|.+.. .+.+.+.|++++..+... .....|.|.++..+|.|.|.|.+.+..+.
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCce
Confidence 35789999999999853 556789999998765421 13457999999999999999999998864
No 104
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.09 E-value=3.8e-10 Score=68.62 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=54.5
Q ss_pred eEEecCCCeEEEEEEE-eecCCCeEEEEECCEEe--ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131 58 WIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 131 (245)
...+.+|+.+.|.|.. .|.|.+.+.|++++.+. ..+.+..+. .....|.+.++..+|.|.|.|.|.|..+..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~--~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS--QTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe--CCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 4557789999999976 77899999999987653 222222222 234589999999999999999999976443
No 105
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.07 E-value=4.6e-10 Score=66.99 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=37.2
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 50 (245)
..+.|.|.+++..|+|+|+|.|.|..+. .++++.|.|..||
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L~V~~pP 85 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADLIVRGPP 85 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEEEEecCC
Confidence 3456999999999999999999999988 7999999999887
No 106
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.06 E-value=4.3e-09 Score=62.77 Aligned_cols=77 Identities=27% Similarity=0.627 Sum_probs=56.8
Q ss_pred CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
|.+...+ ..+..|+.+.|.|.+.+.|.+.+.|++++..+..... .+.+..+..+|.|.|.|.+.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCC
Confidence 5555555 3467899999999999888899999998877663221 266778888999999999999654
Q ss_pred -eeEEEEEEE
Q psy12131 130 -SSQQFIQLS 138 (245)
Q Consensus 130 -~~~~~~~~~ 138 (245)
.....+.|.
T Consensus 70 ~~~s~~~~v~ 79 (80)
T PF13895_consen 70 SNTSTSVNVT 79 (80)
T ss_dssp EEEEEEEEEE
T ss_pred CeEeeeEEee
Confidence 344455443
No 107
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.06 E-value=1.5e-09 Score=61.41 Aligned_cols=63 Identities=22% Similarity=0.539 Sum_probs=50.1
Q ss_pred CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
+|+.+.|.|.+.+.+.+.+.|++++..+.. .... ......|.|.++...|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999988888899999998887762 1111 12345899999999999999999998754
No 108
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.04 E-value=3e-09 Score=64.84 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=53.5
Q ss_pred EEecCCCeEEEEEEEeecCCCeEEEEECCEEecc--------------CCcEEEEe---cCceeEEEEccCCCCCCeEEE
Q psy12131 59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL--------------GGRIDMHV---SSEKHSLLVRHIKDTDFGNYM 121 (245)
Q Consensus 59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~ 121 (245)
+.+..|+.++|.|.+.+.+.+.+.|++++..... ..++.... ......|.|.++..+|.|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 3567899999999999888899999976532211 11222222 233567999999999999999
Q ss_pred EEEEeCCcee
Q psy12131 122 CQASNNLGSS 131 (245)
Q Consensus 122 C~~~n~~g~~ 131 (245)
|.+.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999976543
No 109
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.02 E-value=1.1e-09 Score=65.92 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=37.0
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 50 (245)
..++|.|.+++..|+|.|+|.|.|..|. .++.+.|.|..+|
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L~V~~~P 85 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATLVVRGPP 85 (85)
T ss_pred eEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEEEEECCC
Confidence 3467999999999999999999999998 7889999998876
No 110
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.00 E-value=1.1e-08 Score=63.09 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=55.7
Q ss_pred ceEEecCCCeEEEEEEEeecCCCeEEEEECCEE-e-------ccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA-I-------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~-~-------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
..+.+.+|+.+.|.|.+.+.+.+.+.|++.+.. + ....++.+.. ......|.|.+++.+|.|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 345678999999999998888889999852211 1 1123444422 234568999999999999999999976
Q ss_pred CceeEEEEEE
Q psy12131 128 LGSSQQFIQL 137 (245)
Q Consensus 128 ~g~~~~~~~~ 137 (245)
.. ......|
T Consensus 85 ~~-~~~~~~~ 93 (95)
T cd05717 85 PV-QTAKATV 93 (95)
T ss_pred CC-ceEEEEE
Confidence 53 2344433
No 111
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.97 E-value=3e-09 Score=64.56 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=55.4
Q ss_pred ceEEecCCCeEEEEEE-EeecCCCeEEEEECCEE-eccCCcEEEEecCceeEEEEccCCCCCCe-EEEEEEEeCCc
Q psy12131 57 QWIHTAPDMRAEIICN-VYANPPAKVEWFRDGTA-ITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLG 129 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~-~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 129 (245)
..+.+.+|+.+.|.|. ..|.|.|.+.|+.++.. +..+.+..+.. ...|.|.++...|.| .|.|.|.|...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC---CceEEEEEEehhhCCCCeEEEEEcccc
Confidence 5677889999999997 69999999999986543 34444444332 358999999999999 79999999764
No 112
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.97 E-value=2.6e-08 Score=60.70 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=65.2
Q ss_pred ceEEecCCCeEEEEEEEeecCCCe-EEEEECCEEeccCCcEEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
..+.+..|+++.|.|.+..+|.|+ +.|.+++..+.......+.... -.+.|.+..+..++.|.|+|.+.|+...
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456788999999999999999997 9999987755433221111111 2478999999999999999999999998
Q ss_pred eEEEEEEEe
Q psy12131 131 SQQFIQLSG 139 (245)
Q Consensus 131 ~~~~~~~~~ 139 (245)
...++.|.+
T Consensus 91 ~s~tF~l~v 99 (101)
T cd05860 91 ASVTFNVYV 99 (101)
T ss_pred EEEEEEEEE
Confidence 888887765
No 113
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.97 E-value=4.5e-09 Score=63.49 Aligned_cols=73 Identities=32% Similarity=0.543 Sum_probs=59.0
Q ss_pred cCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131 153 LGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS 230 (245)
Q Consensus 153 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~ 230 (245)
....++.|.|..+ ....+..|.|.|+.......|......... ..+.+.+|.+++.|.|+|.|.|..|.|
T Consensus 11 ~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~v~a~~~~g~g 82 (85)
T PF00041_consen 11 ISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNE--------TSYTITGLQPGTTYEFRVRAVNSDGEG 82 (85)
T ss_dssp ECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTS--------SEEEEESCCTTSEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeee--------eeeeeccCCCCCEEEEEEEEEeCCcCc
Confidence 4778999999996 467899999999987633336655554443 579999999999999999999999988
Q ss_pred CCC
Q psy12131 231 RPS 233 (245)
Q Consensus 231 ~~s 233 (245)
.+|
T Consensus 83 ~~S 85 (85)
T PF00041_consen 83 PPS 85 (85)
T ss_dssp EEE
T ss_pred CCC
Confidence 654
No 114
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.95 E-value=1.8e-08 Score=61.40 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=54.8
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECC--EE----eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE-eCCce
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDG--TA----ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGS 130 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-n~~g~ 130 (245)
.+.+.+|+.+.|.|.. +.|.|.+.|++.. .. +....++... ...|.|.++..+|.|.|.|.+. +..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3456789999999996 4788899999732 11 1122333322 2459999999999999999998 46665
Q ss_pred eEEEEEEEec
Q psy12131 131 SQQFIQLSGI 140 (245)
Q Consensus 131 ~~~~~~~~~~ 140 (245)
....++|.+.
T Consensus 80 ~~~~~~l~v~ 89 (91)
T cd05871 80 TLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEe
Confidence 5566666653
No 115
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.93 E-value=1.6e-08 Score=60.96 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=53.8
Q ss_pred CCeEEEEEEEeecCC--CeEEEEECCEEeccC---C--c-EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131 64 DMRAEIICNVYANPP--AKVEWFRDGTAITLG---G--R-IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135 (245)
Q Consensus 64 g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~---~--~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 135 (245)
|+++.|.|.+.+.+. ..+.|...+...... . + .........+.|.|.+++..|.|.|+|.+.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987654 478998766432110 1 0 0011122457899999999999999999999988777766
Q ss_pred EEEe
Q psy12131 136 QLSG 139 (245)
Q Consensus 136 ~~~~ 139 (245)
.|.+
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 6655
No 116
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.93 E-value=7.6e-09 Score=58.80 Aligned_cols=61 Identities=23% Similarity=0.549 Sum_probs=44.9
Q ss_pred CCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCce--eEEEEccCCCCCCeEEEEEE
Q psy12131 64 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQA 124 (245)
Q Consensus 64 g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~ 124 (245)
|+.+.|.|.+ .+.+.+.+.|.+++................. ..|.|.++..+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 6677789999998875544333322222211 13999999999999999986
No 117
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.91 E-value=3.3e-09 Score=64.03 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=36.8
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 50 (245)
..+.|.|.+++..|+|.|+|.|.|..|. .++++.|.|..+|
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~pP 85 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADLIVRGPP 85 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEEEEECCC
Confidence 4567999999999999999999999887 7889999998876
No 118
>KOG0196|consensus
Probab=98.90 E-value=6.5e-08 Score=78.46 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=94.1
Q ss_pred eeEEEEccCCCCCCeEEEEEEEeCCceeE------EEEEEE--ecCCCCccccCccccCCCeeEEEEEe--CCCCCceEE
Q psy12131 104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQ------QFIQLS--GIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQY 173 (245)
Q Consensus 104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~------~~~~~~--~~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 173 (245)
...+++.++.++....|...|.|+..... ..+++. ...+++...........++++|.|.. ..++.++.|
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildY 476 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDY 476 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeE
Confidence 45788999998888888999998753211 122222 22333434444455778899999998 446788999
Q ss_pred EEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131 174 LLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243 (245)
Q Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~ 243 (245)
.+.|.+.. +...+..+.. . .+..++.+|.+++.|.|+|+|+...|.|..|....++|.+.
T Consensus 477 Evky~ek~~~e~~~~~~~t-~---------~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 477 EVKYYEKDEDERSYSTLKT-K---------TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred EEEEeeccccccceeEEec-c---------cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 99888865 2233322222 1 16789999999999999999999999999999999999875
No 119
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.89 E-value=9.5e-08 Score=58.27 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=55.3
Q ss_pred ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEe--------ccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
+.+.+.+|+++.|.|.+.+.....+.|++-+..+ ..+.++.... .+...+|.|.+++.+|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 3467889999999999998777778887644322 2455666554 456678999999999999999999864
Q ss_pred C
Q psy12131 128 L 128 (245)
Q Consensus 128 ~ 128 (245)
.
T Consensus 85 p 85 (95)
T cd05881 85 P 85 (95)
T ss_pred c
Confidence 3
No 120
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.88 E-value=7.8e-09 Score=63.03 Aligned_cols=45 Identities=36% Similarity=0.570 Sum_probs=38.9
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+..++..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 46 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 46 PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 456666667789999999999999999999999987778888877
No 121
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.87 E-value=9.4e-09 Score=60.13 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=35.3
Q ss_pred cceEEEeec---ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNR---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+++..++ .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 29 ~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 75 (75)
T cd05892 29 DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLDV 75 (75)
T ss_pred CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEeC
Confidence 466665433 26999999999999999999999998 677777754
No 122
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.87 E-value=5.9e-09 Score=60.72 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=35.6
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+..++ +|.|.+++.+|+|.|+|.|.|..|. ...++.|+|
T Consensus 31 ~r~~~~~~g-~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~ 73 (73)
T cd05852 31 SRISIWDDG-SLEILNITKLDEGSYTCFAENNRGK-ANSTGVLSV 73 (73)
T ss_pred CCEEEcCCC-EEEECcCChhHCEEEEEEEECCCCc-eeEEEEEEC
Confidence 567776554 5999999999999999999999998 677777654
No 123
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.84 E-value=5.4e-08 Score=57.94 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=52.7
Q ss_pred eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 125 (245)
...+..|.++.|.|...+. ...+.|++++..+..+.++.....+ |.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe
Confidence 4567899999999999854 6699999999988776666655544 8899999999999999977
No 124
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.84 E-value=2.7e-07 Score=61.25 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=46.6
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccCc--cccCCCeeEEEEEeCCCCC
Q psy12131 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS--RRLGPDGYRLVWQVDTYSG 169 (245)
Q Consensus 106 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~l~~~~~~~~~ 169 (245)
+|.|.+++..|.|.|.|.+.+..+.....+.|.+...|....... ....+..+.|.|.+.+..|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P 67 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP 67 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC
Confidence 689999999999999999999888877777777754332222221 1125678999999977544
No 125
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.84 E-value=1.6e-08 Score=59.44 Aligned_cols=74 Identities=26% Similarity=0.488 Sum_probs=50.0
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 126 (245)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ ....... ..........+.|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46666666555444444 99999998877 7799999 1111111 01111222456899999999999999999987
No 126
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.84 E-value=2.9e-08 Score=60.44 Aligned_cols=71 Identities=11% Similarity=0.262 Sum_probs=51.8
Q ss_pred EecCCCeEEEEEEE-e----ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131 60 HTAPDMRAEIICNV-Y----ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131 (245)
Q Consensus 60 ~~~~g~~~~l~C~~-~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 131 (245)
.+..|.+..|.|.- . ..+.+++.|++++.++........... ....|.|.++..+|+|.|+|.+.+..|..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 35678899999973 2 235679999999998775432211111 23479999999999999999999986544
No 127
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.82 E-value=1.9e-08 Score=59.14 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=37.0
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.|+.+...+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 31 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 31 RRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred cceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 35566666678999999999999999999999988 677787776
No 128
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.82 E-value=2e-08 Score=61.21 Aligned_cols=45 Identities=16% Similarity=0.442 Sum_probs=37.0
Q ss_pred cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+..++ ..|.|.+++.+|+|.|+|.|.|..|....+++.|.+
T Consensus 45 ~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 45 QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 467776554 379999999999999999999999986677777765
No 129
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.78 E-value=2.2e-08 Score=58.65 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=35.2
Q ss_pred cceEEEeecc---eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.|+++..++. .|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 29 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 75 (75)
T cd05893 29 DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLDV 75 (75)
T ss_pred CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEeC
Confidence 4566655432 5999999999999999999999998 577777654
No 130
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.77 E-value=3.8e-08 Score=60.57 Aligned_cols=44 Identities=23% Similarity=0.454 Sum_probs=34.6
Q ss_pred ceEEEee---cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 3 EIELLYN---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 3 ~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
|+.+..+ .++|.|.+++.+|+|.|+|.|.|..|....+++.|.|
T Consensus 49 r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 49 RISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred eEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 5555433 2579999999999999999999997443788888876
No 131
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.75 E-value=1.9e-08 Score=57.25 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=31.3
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.++.|.|.++..+|+|.|+|.|.|..|. ..+++.|++
T Consensus 29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l 65 (67)
T cd05863 29 SQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL 65 (67)
T ss_pred CcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence 4567999999999999999999999987 566666655
No 132
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.74 E-value=2e-07 Score=55.79 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=44.5
Q ss_pred EEEEEEEee-cCCCeEEEEECCEEeccCCcEE-EEecC----ceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRID-MHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
+.|.|.+.| .|.+.+.|++++..+....... ....+ ..+.|.+......+.+.|+|.+.|...
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 689999987 5888999999998875432111 11122 134677777777788899999999753
No 133
>PHA03376 BARF1; Provisional
Probab=98.74 E-value=7.3e-07 Score=59.93 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=53.1
Q ss_pred ceEEE--eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCe
Q psy12131 3 EIELL--YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 80 (245)
Q Consensus 3 ~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 80 (245)
|.++. .++.+|.|.+++.+|.|.|+|.+...... ..+.-.|.+..|-.............-...++.|...|.|.|.
T Consensus 77 rtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~ 155 (221)
T PHA03376 77 FFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH 155 (221)
T ss_pred EEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCch
Confidence 44552 24556999999999999999999975433 2333334443333222222111122255678899988899999
Q ss_pred EEEEEC
Q psy12131 81 VEWFRD 86 (245)
Q Consensus 81 ~~w~~~ 86 (245)
+.|..+
T Consensus 156 ~~Wle~ 161 (221)
T PHA03376 156 VQWLMP 161 (221)
T ss_pred heeccc
Confidence 999864
No 134
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.73 E-value=1.7e-07 Score=57.38 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=55.3
Q ss_pred eEEecCCCeEEEEEEEee-----------cCCCeEEEEECCEEeccCCc-----EEEEecCceeEEEEccCCCCCCeEEE
Q psy12131 58 WIHTAPDMRAEIICNVYA-----------NPPAKVEWFRDGTAITLGGR-----IDMHVSSEKHSLLVRHIKDTDFGNYM 121 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~-----------~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~ 121 (245)
...+.+|+.+.|.|.... .....+.|++++........ .++.. ....|.|.++..+|.|.|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCCEEEEEeCChhhCeEEE
Confidence 456789999999999621 12347999998644333221 12221 2347999999999999999
Q ss_pred EEEEeCCceeEEEEEEE
Q psy12131 122 CQASNNLGSSQQFIQLS 138 (245)
Q Consensus 122 C~~~n~~g~~~~~~~~~ 138 (245)
|++.|........+.|.
T Consensus 87 C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 87 CVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEECCCCcceEEEEEEE
Confidence 99999887766666654
No 135
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.73 E-value=3.9e-08 Score=58.40 Aligned_cols=44 Identities=36% Similarity=0.575 Sum_probs=35.4
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+..+ .+|.|.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus 36 ~r~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 36 GRIQLLSN-GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CCEEEecC-CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 35555443 569999999999999999999999986677777764
No 136
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=1.6e-07 Score=59.51 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=55.0
Q ss_pred ecceEEecCCCeEEEEEEEeecCCCeEEEEECCE---Ee-----------ccCCcEEEEec--CceeEEEEccCCCCCCe
Q psy12131 55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT---AI-----------TLGGRIDMHVS--SEKHSLLVRHIKDTDFG 118 (245)
Q Consensus 55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~---~~-----------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g 118 (245)
.+..+.+.+|+++.|.|.+.+.+.+.+.|++... +. ....++.+... .....|.|.+++.+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 4556778999999999999877778999997321 10 12234544332 35678999999999999
Q ss_pred EEEEEEEeCC
Q psy12131 119 NYMCQASNNL 128 (245)
Q Consensus 119 ~y~C~~~n~~ 128 (245)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998754
No 137
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.72 E-value=5e-08 Score=59.52 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=37.3
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 49 (245)
|+.+..+ ..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|...
T Consensus 40 r~~v~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~ 84 (90)
T cd05726 40 RFSVSQT-GDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYLEVTDV 84 (90)
T ss_pred eEEECCC-CeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEEEEeec
Confidence 4555443 46999999999999999999999998 688888988753
No 138
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.71 E-value=7.6e-08 Score=56.45 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=34.4
Q ss_pred cceEEEeec---ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNR---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.|+.+...+ .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 29 ~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 75 (75)
T cd05744 29 DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLDV 75 (75)
T ss_pred CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEeC
Confidence 355554332 26999999999999999999999998 677776654
No 139
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.70 E-value=6.4e-08 Score=55.84 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=34.0
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++.+. ....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 28 ~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 69 (69)
T cd05725 28 RAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLTV 69 (69)
T ss_pred cEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEEC
Confidence 45555 3456999999999999999999999988 677776654
No 140
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.70 E-value=6.7e-08 Score=56.06 Aligned_cols=40 Identities=35% Similarity=0.523 Sum_probs=34.2
Q ss_pred EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
......+|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 31 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 31 KLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred EEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 3445667999999999999999999999998 677887776
No 141
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.70 E-value=1.7e-07 Score=55.03 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=47.1
Q ss_pred EEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131 67 AEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSS 131 (245)
Q Consensus 67 ~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 131 (245)
+.|.|... +.|.+.+.|++++.++..... . ...+ ..+.|.+.....+|.+.|.|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 67999985 578889999999998865321 1 0111 23578888888889999999999987643
No 142
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.70 E-value=7.6e-08 Score=59.40 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=38.6
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 48 (245)
.++.+..+++.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..
T Consensus 49 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~ 94 (95)
T cd05730 49 EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHLKVFA 94 (95)
T ss_pred CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEEe
Confidence 35555666678999999999999999999999998 68888888753
No 143
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.70 E-value=5.6e-08 Score=60.32 Aligned_cols=44 Identities=30% Similarity=0.503 Sum_probs=35.3
Q ss_pred cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+++.. +...|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus 53 ~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~ 98 (98)
T cd05870 53 GRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI 98 (98)
T ss_pred ceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc-ceeEEEEeC
Confidence 4666653 2357999999999999999999999997 577777754
No 144
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.70 E-value=4.8e-08 Score=57.20 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=35.7
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.|+....+ ..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 30 ~~~~~~~~-g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 30 GRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CCEEEcCC-cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 35555443 459999999999999999999999986677777776
No 145
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.70 E-value=3.2e-07 Score=56.77 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=61.4
Q ss_pred cccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG 228 (245)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G 228 (245)
.+..|+.+.|.|...+.+++. ..|+++.. .......+..... ...+.|.++...+.+.|.|.|.|.+|
T Consensus 11 ~v~~G~~v~l~C~~~G~p~p~--v~W~kdg~~l~~~~~~~~~~~~~--------~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 11 KVRAGESVELFCKVTGTQPIT--CTWMKFRKQIQEGEGIKIENTEN--------SSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred EEECCCEEEEEEEEcccCCCc--eEEEECCEEecCCCcEEEEecCC--------eeEEEECCCChhhCEEEEEEEEcCCC
Confidence 357799999999998765543 22455443 1121122221111 26789999999999999999999999
Q ss_pred CCCCCcceEEecCCCCC
Q psy12131 229 WSRPSKAYVFATEGAET 245 (245)
Q Consensus 229 ~~~~s~~~~~~t~~~~~ 245 (245)
....+..+.|...|.||
T Consensus 81 ~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 81 SRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ceeEEEEEEEecCCCCC
Confidence 99999999999998876
No 146
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.68 E-value=4.5e-08 Score=57.16 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=34.6
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.|+.+..+ .+|.|.+++.+|+|.|+|.|.|..|. ...++.|.|
T Consensus 31 ~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 73 (73)
T cd04969 31 SRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLSV 73 (73)
T ss_pred CCEEECCC-CeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEEC
Confidence 35555544 45999999999999999999999988 677777654
No 147
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.68 E-value=5.4e-08 Score=56.52 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=34.9
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
......+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 29 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 29 TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred eeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 344445567999999999999999999999987 677777776
No 148
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.68 E-value=9.6e-08 Score=55.40 Aligned_cols=43 Identities=21% Similarity=0.426 Sum_probs=34.4
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+++.+..++ .|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus 29 ~~~~~~~~~-~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V 71 (71)
T cd05723 29 DYFKIVKEH-NLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLII 71 (71)
T ss_pred CCEEEEecC-CEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEEC
Confidence 345555544 4999999999999999999999998 677777654
No 149
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.68 E-value=9.4e-08 Score=56.40 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=35.3
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI 47 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 47 (245)
++.+..+...|.|.+++.+|+|.|+|.|.|..|.. .++.+.|.|.
T Consensus 30 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 30 NYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred cEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 44555556689999999999999999999999873 3456767664
No 150
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.68 E-value=8.9e-08 Score=58.60 Aligned_cols=36 Identities=19% Similarity=0.533 Sum_probs=30.7
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++|.|.+++.+|+|.|+|.|.|..|....+++.|.|
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 479999999999999999999987665677777754
No 151
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.67 E-value=1e-07 Score=57.47 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=35.7
Q ss_pred cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+.. +.+.|.|.+++.+|+|.|+|.|.|..|. .++++.|.|
T Consensus 41 ~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V 86 (86)
T cd05894 41 GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASLFVKV 86 (86)
T ss_pred CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEEEEEC
Confidence 3565554 3467999999999999999999999998 677777764
No 152
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.67 E-value=5.6e-07 Score=54.52 Aligned_cols=85 Identities=11% Similarity=-0.096 Sum_probs=56.6
Q ss_pred CCeeEEEEEeCCCCCceEEEEEEEeec--CC-CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131 155 PDGYRLVWQVDTYSGIIQYLLKFRERE--EL-TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231 (245)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~ 231 (245)
|+.+.|.|.+.+.+++ .+ .|+++.. .. .....+..... .......+.|.++...+.+.|.|.|.|.+|...
T Consensus 1 g~~~~l~C~~~g~p~~-~i-~W~k~~~~i~~~~~r~~~~~~~~----~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~ 74 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IV-RWEKEDRIINPEMSRYLVSTKEV----GDEVISTLQILPTVREDSGFFSCHAINSYGEDR 74 (88)
T ss_pred CCeEEEEEEEECCCCC-EE-EEeeCCEECCCCCCcEEEEEecC----CCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence 4678999999776544 22 2344332 11 11111111111 112236789999999999999999999999999
Q ss_pred CCcceEEecCCCCC
Q psy12131 232 PSKAYVFATEGAET 245 (245)
Q Consensus 232 ~s~~~~~~t~~~~~ 245 (245)
.+..+.+...|.||
T Consensus 75 ~~~~L~V~~~P~~P 88 (88)
T cd05735 75 GIIQLTVQEPPDPP 88 (88)
T ss_pred EEEEEEEeCCCCCC
Confidence 99999999988876
No 153
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.66 E-value=1.8e-07 Score=57.16 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=54.1
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
+|.+...+. ..+..|++++|.|... .+...+.|++++....... .........|.|.++..+|.|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 355555554 3578999999999875 5667899999887533211 112234567999999999999999999885
No 154
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.66 E-value=1.4e-07 Score=55.55 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=37.6
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
++.+..++..|.|.+++.+|+|.|+|.+.|..|. ...++.|.|.
T Consensus 31 ~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 31 QLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred cEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 4556666678999999999999999999999998 6788888875
No 155
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.66 E-value=6.5e-08 Score=56.66 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=33.4
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++.+.. ..+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 33 ~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V 74 (74)
T cd05745 33 RHLVLS-SGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLTV 74 (74)
T ss_pred CeEEcc-CCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEeC
Confidence 333433 446999999999999999999999998 677777754
No 156
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.65 E-value=8.1e-08 Score=56.27 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=34.5
Q ss_pred ceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 3 EIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 3 ~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++.+.. ..+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 30 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 74 (74)
T cd05748 30 RVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV 74 (74)
T ss_pred eEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence 444433 3567999999999999999999999998 677777764
No 157
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.61 E-value=7.6e-07 Score=56.24 Aligned_cols=77 Identities=12% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCeEEEEEEEeecC------------CCeEEEEEC--CE---Ee-----------ccCCcEEEEe---cCceeEEEEcc
Q psy12131 63 PDMRAEIICNVYANP------------PAKVEWFRD--GT---AI-----------TLGGRIDMHV---SSEKHSLLVRH 111 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~------------~~~~~w~~~--~~---~~-----------~~~~~~~~~~---~~~~~~l~i~~ 111 (245)
.|++++|.|...... .+.+.|++- +. .+ ....++.+.. ......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999987432 358999973 21 01 0112343332 33567999999
Q ss_pred CCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 112 IKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 112 ~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
++.+|.|.|.|.+.++.......+.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999988777766666654
No 158
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.61 E-value=1.2e-06 Score=54.61 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=50.0
Q ss_pred CCeEEEEEEEeecCC---CeEEEEECC--EEe---------c------cCCcEEEEe---cCceeEEEEccCCCCCCeEE
Q psy12131 64 DMRAEIICNVYANPP---AKVEWFRDG--TAI---------T------LGGRIDMHV---SSEKHSLLVRHIKDTDFGNY 120 (245)
Q Consensus 64 g~~~~l~C~~~~~~~---~~~~w~~~~--~~~---------~------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y 120 (245)
|+++.|.|...+... ..+.|++.. ..+ . ...++.+.. .....+|.|.+++.+|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678899998863322 367787743 111 0 001222211 12356899999999999999
Q ss_pred EEEEEeCCceeEEEEEEEe
Q psy12131 121 MCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 121 ~C~~~n~~g~~~~~~~~~~ 139 (245)
.|.+.+..+.....+.|.+
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999988777777777765
No 159
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.60 E-value=5.4e-07 Score=57.19 Aligned_cols=74 Identities=14% Similarity=0.307 Sum_probs=52.9
Q ss_pred eecceEEecCCCeEEEEEEEeecCCCeEEEEECCE--Eec----------------cCCcEEEEec-CceeEEEEccCCC
Q psy12131 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT--AIT----------------LGGRIDMHVS-SEKHSLLVRHIKD 114 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~--~~~----------------~~~~~~~~~~-~~~~~l~i~~~~~ 114 (245)
..|..+.+.+|++++|.|...+ +.+.+.|++... ... ...++..... .....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3455678899999999999987 667899998321 100 0123433322 2457899999999
Q ss_pred CCCeEEEEEEEeCC
Q psy12131 115 TDFGNYMCQASNNL 128 (245)
Q Consensus 115 ~d~g~y~C~~~n~~ 128 (245)
+|.|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998753
No 160
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.59 E-value=1.6e-06 Score=54.60 Aligned_cols=78 Identities=18% Similarity=0.436 Sum_probs=53.9
Q ss_pred CCCeEEEEEEEeecC------CCeEEEEECC-----E-Eec--cCCcE--------EEE---ecCceeEEEEccCCCCCC
Q psy12131 63 PDMRAEIICNVYANP------PAKVEWFRDG-----T-AIT--LGGRI--------DMH---VSSEKHSLLVRHIKDTDF 117 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~------~~~~~w~~~~-----~-~~~--~~~~~--------~~~---~~~~~~~l~i~~~~~~d~ 117 (245)
.|++++|.|.....+ .+.+.|++.. . .+. .+... ++. .......|+|.+++.+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987653 4589999852 1 110 11111 111 123467999999999999
Q ss_pred eEEEEEEEeCCceeEEEEEEEec
Q psy12131 118 GNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 118 g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
|.|.|.+.+..+.....+.|.+.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999987777777777653
No 161
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.58 E-value=2.2e-07 Score=57.56 Aligned_cols=35 Identities=40% Similarity=0.614 Sum_probs=31.1
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+.|.|.+++.+|+|.|+|.|.|..|. .++.+.|.|
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 97 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQ-DSQSMYLEV 97 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCC-eeEEEEEEC
Confidence 56999999999999999999999998 677777764
No 162
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.58 E-value=2.3e-07 Score=56.27 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=33.3
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
..+..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|+
T Consensus 50 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V~ 88 (88)
T cd05851 50 MSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVYVQ 88 (88)
T ss_pred cCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEEEC
Confidence 34567999999999999999999999998 6777777763
No 163
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.57 E-value=1.4e-07 Score=54.43 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=32.0
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
++.+.. .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|
T Consensus 29 ~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L 68 (69)
T cd05746 29 KFHISP-EGYLAIRDVGVADQGRYECVARNTIGY-ASVSMVL 68 (69)
T ss_pred CEEECC-CCEEEECcCChhhCEEEEEEEECCCCc-EEEEEEe
Confidence 444443 456999999999999999999999988 5666655
No 164
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.57 E-value=2.9e-07 Score=57.15 Aligned_cols=37 Identities=32% Similarity=0.315 Sum_probs=33.1
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
.+.|.|.++..+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~-~~~t~~L~V~ 100 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDAS-KSLTFELYVN 100 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCcc-EEEEEEEEEE
Confidence 467999999999999999999999998 7888888775
No 165
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.56 E-value=1.8e-07 Score=57.82 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=38.8
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+++..++.+|+|.+++.+|+|.|.|.+....+....+.+.|.|
T Consensus 52 ~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 52 ERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred eeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 477887777889999999999999999999887776677888876
No 166
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.55 E-value=6.5e-07 Score=56.32 Aligned_cols=70 Identities=17% Similarity=0.346 Sum_probs=50.5
Q ss_pred EecCCCeEEEEEEEeec-CCCeEEEEECCE-----Ee------------ccCCcEEEEecC--ceeEEEEccCCCCCCeE
Q psy12131 60 HTAPDMRAEIICNVYAN-PPAKVEWFRDGT-----AI------------TLGGRIDMHVSS--EKHSLLVRHIKDTDFGN 119 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~-----~~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~ 119 (245)
.+.+|+.+.|.|...+. +...+.|++... .+ ....++.+.... ....|+|.+++.+|.|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999876 567899998322 11 011233333322 46789999999999999
Q ss_pred EEEEEEeCCc
Q psy12131 120 YMCQASNNLG 129 (245)
Q Consensus 120 y~C~~~n~~g 129 (245)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998764
No 167
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.54 E-value=9.8e-07 Score=55.59 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=52.5
Q ss_pred EeecceEEecCCCeEEEEEEEeecC-CCeEEEEECC--E---Eec---------cCCcEEEEecCceeEEEEccCCCCCC
Q psy12131 53 SVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF 117 (245)
Q Consensus 53 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~ 117 (245)
...|....+.+|+++.|.|.+.+.. ...+.|++.. . .+. ...++..........|.|.+++.+|.
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3445567789999999999987655 5679999732 1 111 01234443334456899999999999
Q ss_pred eEEEEEEEeC
Q psy12131 118 GNYMCQASNN 127 (245)
Q Consensus 118 g~y~C~~~n~ 127 (245)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998753
No 168
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.54 E-value=1.6e-06 Score=54.62 Aligned_cols=78 Identities=18% Similarity=0.409 Sum_probs=54.0
Q ss_pred CCCeEEEEEEEeecC------CCeEEEEECCE------E--ecc----------CCcEEEEec-CceeEEEEccCCCCCC
Q psy12131 63 PDMRAEIICNVYANP------PAKVEWFRDGT------A--ITL----------GGRIDMHVS-SEKHSLLVRHIKDTDF 117 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~------~~~~~w~~~~~------~--~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~ 117 (245)
.|++++|.|.....| ...+.|++... . +.. ..++.+... .....|.|.+++.+|.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999987653 34799998431 1 110 122222211 2346899999999999
Q ss_pred eEEEEEEEeCCceeEEEEEEEec
Q psy12131 118 GNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 118 g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
|.|.|.+.+..+.....+.|.+.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988888777777653
No 169
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.54 E-value=2.8e-07 Score=55.70 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=34.1
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++.+.. ...|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 44 ~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 44 RVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred CEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 455554 4569999999999999999999999886566666653
No 170
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.53 E-value=1.5e-07 Score=57.41 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=31.6
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
..|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~sa~L~V 89 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGP-SHHSAWLTV 89 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCc-ccCCEEEEe
Confidence 46999999999999999999999998 677888877
No 171
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.53 E-value=3.1e-07 Score=53.20 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=30.7
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+..|.|.+++.+|+|.|+|.|.|..|. ....+.+.|
T Consensus 33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~ 69 (71)
T cd04976 33 SGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL 69 (71)
T ss_pred CCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence 4567999999999999999999999887 556555554
No 172
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.53 E-value=9.4e-07 Score=56.69 Aligned_cols=72 Identities=15% Similarity=0.370 Sum_probs=52.8
Q ss_pred ecceEEecCCCeEEEEEEEee--cCCCeEEEEEC--CE-E---e-------------ccCCcEEEEecC--ceeEEEEcc
Q psy12131 55 EKQWIHTAPDMRAEIICNVYA--NPPAKVEWFRD--GT-A---I-------------TLGGRIDMHVSS--EKHSLLVRH 111 (245)
Q Consensus 55 ~~~~~~~~~g~~~~l~C~~~~--~~~~~~~w~~~--~~-~---~-------------~~~~~~~~~~~~--~~~~l~i~~ 111 (245)
.+..+.+.+|+.+.|.|.+.+ .+.+.+.|++. +. + + ....++.+.... ....|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 355677889999999999987 56778999983 21 1 0 012345544443 467899999
Q ss_pred CCCCCCeEEEEEEEe
Q psy12131 112 IKDTDFGNYMCQASN 126 (245)
Q Consensus 112 ~~~~d~g~y~C~~~n 126 (245)
++.+|.|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999874
No 173
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.51 E-value=1.9e-07 Score=53.79 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.6
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN 45 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 45 (245)
+..|.|.++..+|+|.|+|.|.|..|.. ...++.|.
T Consensus 33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4569999999999999999999999873 33444443
No 174
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.50 E-value=5.8e-07 Score=52.88 Aligned_cols=36 Identities=33% Similarity=0.358 Sum_probs=31.6
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
...|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 456999999999999999999999998 677777776
No 175
>KOG3515|consensus
Probab=98.49 E-value=1.3e-06 Score=71.54 Aligned_cols=226 Identities=15% Similarity=0.163 Sum_probs=116.7
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEEecCCe---EEeecceEEecCCCeEEEEEEEe-ecCCCeEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEW 83 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w 83 (245)
.+.|.+...+.+|.|+|+|.|.+..-.. ......+.+..+.. +..........+|+.+.|.|.+. +.|.+.+.|
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW 241 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence 4558999999999999999999863222 22333334432221 11122334567899999999774 567789999
Q ss_pred EECCEEeccCCcEEEEecCc--eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC-CCccccCccccCCCeeEE
Q psy12131 84 FRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN-IPVFQKSSRRLGPDGYRL 160 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~l 160 (245)
+++...+...........+. .+.+.+..-.....-...|.+.| .........+...+. .++.........+++..+
T Consensus 242 ~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~ 320 (741)
T KOG3515|consen 242 YKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAASQITAVQVKPTAVPISTSDSGLSSGRSARS 320 (741)
T ss_pred ccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccceeeecccccccccccCccccccccccccc
Confidence 99877655431111111111 11222222222234456799998 221111111111111 122222223466778888
Q ss_pred EEEeCCCCCceEEEEEEEeecCCCCeEE--EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131 161 VWQVDTYSGIIQYLLKFREREELTPWRN--IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~ 238 (245)
.|...+..|...+. ||++.+ |.+ ...................+..+...+...+.|.|.|..+....|....+
T Consensus 321 ~c~~sss~p~~~i~-w~~~~~----~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l 395 (741)
T KOG3515|consen 321 SCVSSSSKPPAHIA-WYKDTK----MPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL 395 (741)
T ss_pred ceeccCCCCcccee-eeccCc----ccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence 88874433333333 222222 111 11111222222333455556666777777888889888865554444444
Q ss_pred ecC
Q psy12131 239 ATE 241 (245)
Q Consensus 239 ~t~ 241 (245)
...
T Consensus 396 ~~l 398 (741)
T KOG3515|consen 396 PVL 398 (741)
T ss_pred ccc
Confidence 333
No 176
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.48 E-value=1.3e-06 Score=53.61 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=50.3
Q ss_pred CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 126 (245)
|.+...+ ...+..|++++|.|.... ....+.|++++...................+.|..++.+|+|.|+|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 5555554 344779999999998764 44579999987653211000011122355789999999999999999753
No 177
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.48 E-value=4.7e-07 Score=55.50 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=31.3
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 58 ~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~~~~~~L~v 94 (94)
T cd05756 58 QKDLLWFLPAALEDSGLYTCVVRNSTYC-MKVSISLTV 94 (94)
T ss_pred cCCeEEEccCCcccCeEEEEEEcCCCcc-EEEEEEEEC
Confidence 4567999999999999999999998887 666776654
No 178
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.48 E-value=3.8e-07 Score=54.41 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=31.6
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
...|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 81 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPLSV 81 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCce-EEEEEEEeC
Confidence 356999999999999999999999998 677777764
No 179
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.48 E-value=4.8e-07 Score=52.93 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=30.9
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
..+|.|.++..+|+|.|+|.|.|..|. .++.+.|.|
T Consensus 39 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 74 (74)
T cd05764 39 NGTLDILITTVKDTGSFTCIASNAAGE-ATATVELHI 74 (74)
T ss_pred CCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEEC
Confidence 356999999999999999999999987 677777654
No 180
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.48 E-value=3e-06 Score=52.87 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=50.4
Q ss_pred EecCCCeEEEEEEEeecCCCeEEEEECCE-----Ee----c----------cCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131 60 HTAPDMRAEIICNVYANPPAKVEWFRDGT-----AI----T----------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~~~~~~~w~~~~~-----~~----~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 120 (245)
.+.+|+++.|.|.........+.|++... .+ . ..++..+. .+.+|.|.++...|.|.|
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~~D~G~Y 85 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQKDTGFY 85 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCcccCEEE
Confidence 46789999999976533334899999521 11 0 01222222 234899999999999999
Q ss_pred EEEEEeCC-ceeEEEEEEE
Q psy12131 121 MCQASNNL-GSSQQFIQLS 138 (245)
Q Consensus 121 ~C~~~n~~-g~~~~~~~~~ 138 (245)
.|.+.+.. ......+.+.
T Consensus 86 ~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 86 TLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEeCCccEEEEEEEEE
Confidence 99999876 3444444443
No 181
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.47 E-value=5.6e-07 Score=55.61 Aligned_cols=35 Identities=43% Similarity=0.634 Sum_probs=30.6
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~s~~l~v 96 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGG-DQQSMYLEV 96 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCC-cEEEEEEeC
Confidence 57999999999999999999999998 577776654
No 182
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.47 E-value=3.9e-07 Score=56.66 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=32.6
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
.+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~-~~~t~~l~V~ 100 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAV-KSYTFALQIQ 100 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCce-EEEEEEEEEE
Confidence 467999999999999999999999988 6778887774
No 183
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.47 E-value=5.8e-07 Score=52.88 Aligned_cols=39 Identities=33% Similarity=0.328 Sum_probs=33.2
Q ss_pred EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
...+..|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus 37 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 37 RVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred EccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 334567999999999999999999999988 677777776
No 184
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.46 E-value=3.7e-06 Score=52.14 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=49.8
Q ss_pred CeEEEEEEEeecC---CCeEEEEECCEE----e-----------cc--CCcEEEEecC-ceeEEEEccCCCCCCeEEEEE
Q psy12131 65 MRAEIICNVYANP---PAKVEWFRDGTA----I-----------TL--GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ 123 (245)
Q Consensus 65 ~~~~l~C~~~~~~---~~~~~w~~~~~~----~-----------~~--~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~ 123 (245)
+++.|.|.....+ ...+.|++.... + .. ..+..+.... ....|.|.+++.+|.|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987654 347999984321 0 00 1111111111 356899999999999999999
Q ss_pred EEe-CCceeEEEEEEEe
Q psy12131 124 ASN-NLGSSQQFIQLSG 139 (245)
Q Consensus 124 ~~n-~~g~~~~~~~~~~ 139 (245)
+.. ..|.....+.|.+
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6677777777765
No 185
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.46 E-value=6.2e-07 Score=54.91 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=30.1
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v 92 (92)
T cd05737 58 ASLTIKGVSSEDSGKYGIVVKNKYGG-ETVDVTVSV 92 (92)
T ss_pred EEEEEccCChhhCEEEEEEEEECCCc-ceEEEEEeC
Confidence 46999999999999999999999988 566666654
No 186
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.46 E-value=5.6e-07 Score=55.15 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=36.1
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+..+ .+|.|.+++.+|+|.|+|.+....+......+.|.|
T Consensus 49 ~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 49 GRETIYPN-GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred CeEEEcCC-ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 57788776 669999999999999999999887665666776654
No 187
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.46 E-value=2.4e-07 Score=56.48 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=31.3
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+.|.|.+++.+|+|.|+|.|.|..|. ...++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGI-SHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCc-ccceEEEEE
Confidence 46999999999999999999999998 677777776
No 188
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.45 E-value=6e-07 Score=53.21 Aligned_cols=40 Identities=25% Similarity=0.509 Sum_probs=31.0
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
|+.+. +..|.|.+++.+|+|.|+|.|.|..|. ....+.|+
T Consensus 39 ~~~~~--~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~ 78 (79)
T cd04973 39 RTRIT--GEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVN 78 (79)
T ss_pred eEEEe--CCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEe
Confidence 45543 346999999999999999999998876 45555554
No 189
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.44 E-value=9.8e-07 Score=54.46 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=36.3
Q ss_pred cceEEEe---ecceEEEeccCCCCCEEEEEEEEcC-CCCceeeEEEEEEe
Q psy12131 2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~ 47 (245)
+|+.+.. ++++|.|.+++.+|+|.|+|.+.+. .|. .++.+.|.|.
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V~ 99 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTVY 99 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEEC
Confidence 5777663 3477999999999999999999994 454 7888888873
No 190
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.43 E-value=7e-07 Score=53.80 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=32.1
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.....|.|.+++.+|+|.|+|.|.|..|. ...++.|.|
T Consensus 48 ~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 85 (85)
T cd05857 48 NQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 85 (85)
T ss_pred CCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEEEEC
Confidence 34556999999999999999999999998 677777764
No 191
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.43 E-value=8.5e-07 Score=55.33 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=35.2
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|..+..+++ |.|.+++.+|+|.|+|.+.+.......+.+.|.|
T Consensus 62 gR~~~~~ngS-L~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 62 GRETIYPNGS-LLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CcEEEeCCCc-EEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 6778887665 9999999999999999999876544566666653
No 192
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.43 E-value=8e-06 Score=52.02 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=49.9
Q ss_pred ceEEecCCCeEEEEEEEeecC----CCeEEEEE---------------CCEEec-cC----CcEEEEe--cCceeEEEEc
Q psy12131 57 QWIHTAPDMRAEIICNVYANP----PAKVEWFR---------------DGTAIT-LG----GRIDMHV--SSEKHSLLVR 110 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~ 110 (245)
..+.+..|+.+.|.|...... ...+.|.. ++.... .. .+..+.. .....++.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345678999999999997643 35899933 232221 11 1222221 2345689999
Q ss_pred cCCCCCCeEEEEEEEeCCc
Q psy12131 111 HIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 111 ~~~~~d~g~y~C~~~n~~g 129 (245)
+++.+|.|.|.|.+.|..+
T Consensus 86 nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred cCCcccCEEEEEEEEcCCC
Confidence 9999999999999999765
No 193
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.43 E-value=6e-07 Score=53.97 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=30.8
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+.|.|.+++.+|+|.|+|.|.|..|. .+++..|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMD-QKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCc-eEEEEEEEE
Confidence 457999999999999999999999887 566776665
No 194
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.43 E-value=5.1e-06 Score=52.58 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=52.8
Q ss_pred CCCeEEEEEEEeecC----------CCeEEEEEC--CEEe--c--c----------CCcEEEE---ecCceeEEEEccCC
Q psy12131 63 PDMRAEIICNVYANP----------PAKVEWFRD--GTAI--T--L----------GGRIDMH---VSSEKHSLLVRHIK 113 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~----------~~~~~w~~~--~~~~--~--~----------~~~~~~~---~~~~~~~l~i~~~~ 113 (245)
.|++++|.|.....+ ...+.|++. +... . . ..++.+. .......|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999997543 257999983 1110 0 0 1122221 12345789999999
Q ss_pred CCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131 114 DTDFGNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 114 ~~d~g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
.+|.|.|.|.+..........+.|.+.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876667777776653
No 195
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.43 E-value=9.3e-07 Score=51.96 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=32.5
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++..|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus 39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 39 DGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred cCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 3456999999999999999999999998 688888876
No 196
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.42 E-value=1.3e-06 Score=53.05 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=32.5
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 87 (88)
T cd04968 51 SGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIYV 87 (88)
T ss_pred eCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEEE
Confidence 4567999999999999999999999998 677777776
No 197
>KOG3515|consensus
Probab=98.42 E-value=5.7e-06 Score=67.86 Aligned_cols=231 Identities=13% Similarity=0.017 Sum_probs=133.9
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC--e
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--K 80 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~ 80 (245)
++.+..+...+.+.++...|.|.|.|.+.|..|. ....+.+.+...|.............++++.+.|.....+.- .
T Consensus 450 ~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg-~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m 528 (741)
T KOG3515|consen 450 VVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGG-AQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQM 528 (741)
T ss_pred eEEeeccccccccceeeeccCCcceeeeccCCCc-eeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhh
Confidence 3444555554557889999999999999999888 566666778888887766666777788888999998765543 5
Q ss_pred EEEEECCEEeccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecC------CCCccccCcc
Q psy12131 81 VEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIP------NIPVFQKSSR 151 (245)
Q Consensus 81 ~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~------~~p~~~~~~~ 151 (245)
+.|.+.+...... .............+.+.....-.++.|.|.+.+ .+.... ...+.+.+ .+|..... .
T Consensus 529 ~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v~~~tp~~~~~-~ 606 (741)
T KOG3515|consen 529 HHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKAYSALIVTVRTPNMYTA-Q 606 (741)
T ss_pred hcccccCCCCcccccccccccccCCccceeecccccccccceEEeecC-CCCccccceEEEecccccccccCCceeee-c
Confidence 7898877654321 111122222344566666666667999999999 433222 22222221 11111111 1
Q ss_pred ccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131 152 RLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229 (245)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~ 229 (245)
...+ .+.+.|.+.+. +...|........ .......+..-.. .....+..+.+..++..|.+.|.+.|.+|.
T Consensus 607 ~g~v-~as~~~~a~~~-~~~~~~~~k~p~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~ 679 (741)
T KOG3515|consen 607 EGCV-NASDDCVASGV-PSTSFTTAKTPLQTTEGPHIREKATQQG-----QTHSSSEWILNHIDGSDYENGCTTQNLLGS 679 (741)
T ss_pred cCcc-cccccceeccc-ccceeecccCCCcccCCceEEEeeeecc-----ccccccccccCCcchhhhcceeeecccCCC
Confidence 1111 66777744433 2223332111111 1111111111111 111234455677788899999999999999
Q ss_pred CCCCcceEEecCCC
Q psy12131 230 SRPSKAYVFATEGA 243 (245)
Q Consensus 230 ~~~s~~~~~~t~~~ 243 (245)
++-+-.++--+.+.
T Consensus 680 ~~v~~~~~~~t~~~ 693 (741)
T KOG3515|consen 680 DHVSGAIHSGTASV 693 (741)
T ss_pred ccccceecCCcCCC
Confidence 88777655544443
No 198
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.42 E-value=6.2e-07 Score=52.76 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=29.7
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
.+.|.|.++..+|+|.|+|.|.|..|. .++++.+.
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~~~ 77 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVSAH 77 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCcc-cceEEEee
Confidence 346999999999999999999999998 56666553
No 199
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.42 E-value=8.2e-07 Score=53.30 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=31.5
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCC-CceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~ 47 (245)
.+.|.|.+++.+|+|.|+|.|.+..+ ...++++.|+|.
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 46799999999999999999998765 236778888774
No 200
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.41 E-value=6.6e-07 Score=53.18 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=29.2
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
+.|.|.+++..|+|.|+|.|.|..|. .++.+.|.
T Consensus 46 ~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~~~ 79 (81)
T cd04971 46 GCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSISAH 79 (81)
T ss_pred EEEEECCCCcccCeEEEEEEEeCCCC-eeeEEEee
Confidence 45999999999999999999999998 56666554
No 201
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.41 E-value=1.1e-06 Score=55.51 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.5
Q ss_pred cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+|+++.. +.++|+|.+++.+|+|.|+|.+.+.... .+..+.|.|.
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~ 109 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIED-NYDTVEVQVK 109 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence 4777754 6788999999999999999999976555 5777777765
No 202
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.41 E-value=1.4e-06 Score=54.23 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=35.1
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEEEcC-CCCceeeEEEEEE
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v 46 (245)
+|+.+.. ++.+|+|.+++.+|+|.|+|.+.+. .|. ..+.+.|.|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 5777763 2567999999999999999999974 455 577888876
No 203
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.40 E-value=8.5e-07 Score=56.07 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=35.5
Q ss_pred ceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEEEEecCCe
Q psy12131 11 ESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51 (245)
Q Consensus 11 ~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 51 (245)
+.|.|.++. .+|.|.|+|.|.|..|. ....+.|.|..+|.
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i~L~~~~~p~ 109 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGE-DSLDIQLVSTSRPD 109 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCcc-CcEEEEEEecCCCC
Confidence 569999997 59999999999999998 68899999987773
No 204
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.39 E-value=1.1e-06 Score=51.71 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=27.3
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNF 42 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 42 (245)
.+.|.|.+++.+|+|.|+|.+.|..|. .+.++
T Consensus 43 ~~~L~I~~~~~~DsG~Y~C~a~N~~g~-~~~~~ 74 (76)
T cd05895 43 SSELQISKASLADNGEYKCMVSSKLGN-DSVTA 74 (76)
T ss_pred EEEEEECcCCcccCEEEEEEEEeCCCc-eeEEE
Confidence 466999999999999999999999887 45444
No 205
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.39 E-value=6.9e-07 Score=53.41 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=30.8
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
...|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v 82 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVDV 82 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEeC
Confidence 457999999999999999999999987 677776653
No 206
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.39 E-value=3.1e-07 Score=54.95 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=32.7
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+..|.|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus 46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 45679999999999999999999998876777777765
No 207
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.38 E-value=6.1e-07 Score=54.71 Aligned_cols=37 Identities=38% Similarity=0.582 Sum_probs=32.0
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
..+.|.|.+++.+|+|.|+|.+.|..|. ..+.+.|.|
T Consensus 54 ~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V 90 (90)
T PF07679_consen 54 GSSSLTIKNVTREDAGTYTCVASNSSGE-ATASVNLTV 90 (90)
T ss_dssp TEEEEEESSESGGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred ceeEEccCCCChhhCEEEEEEEEECCCE-EEEEEEEEC
Confidence 4567999999999999999999999877 677777765
No 208
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.38 E-value=3.5e-06 Score=52.23 Aligned_cols=67 Identities=19% Similarity=0.393 Sum_probs=48.5
Q ss_pred EecCCCeEEEEEEEeec--CCCeEEEEECC---EE--ec---------cCCcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131 60 HTAPDMRAEIICNVYAN--PPAKVEWFRDG---TA--IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~--~~~~~~w~~~~---~~--~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 123 (245)
.+.+|++++|.|...+. ....+.|++-. .+ +. ...++..........|.|.+++.+|.|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 36789999999998765 45679998721 11 10 12345554555667899999999999999999
Q ss_pred EEe
Q psy12131 124 ASN 126 (245)
Q Consensus 124 ~~n 126 (245)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 209
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.36 E-value=1.5e-06 Score=51.26 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=32.5
Q ss_pred ceEEEeecceEEEeccCC----CCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 3 EIELLYNRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
++.+......|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 31 ~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 31 RVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 555655567799999864 799999999999999865555544
No 210
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.36 E-value=2.1e-06 Score=52.51 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=35.4
Q ss_pred cceEEE---eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELL---YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+. ..+++|.|.+++.+|+|.|+|.+.........++..|.|
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 467764 345779999999999999999998665443788888876
No 211
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.35 E-value=1.9e-06 Score=50.70 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=32.5
Q ss_pred cceEEEeecceEEEeccCC----CCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 2 KEIELLYNRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
.++.+...+.+|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 30 ~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 30 PRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4566655667799998752 479999999999999866666554
No 212
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.35 E-value=1.2e-05 Score=51.38 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=49.1
Q ss_pred cceEEecCCCeEEEEEEEeecC----CCeEEEEEC----CEE--ec---------cCCc----EEEEe--cCceeEEEEc
Q psy12131 56 KQWIHTAPDMRAEIICNVYANP----PAKVEWFRD----GTA--IT---------LGGR----IDMHV--SSEKHSLLVR 110 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~~----~~~--~~---------~~~~----~~~~~--~~~~~~l~i~ 110 (245)
+..+.+.+|+++.|.|.....+ ...+.|++. +.. +. ...+ ..+.. ......|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4467788999999999986543 236999741 111 10 0111 11111 1235679999
Q ss_pred cCCCCCCeEEEEEEEeCCc
Q psy12131 111 HIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 111 ~~~~~d~g~y~C~~~n~~g 129 (245)
+++.+|.|.|.|.+.|..+
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999998665
No 213
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.34 E-value=1.6e-06 Score=54.04 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=35.0
Q ss_pred cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+.. +..+|+|.+++.+|+|.|+|.+.+..+. ..+.+.|.|
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 4666542 3467999999999999999999987665 677777776
No 214
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.34 E-value=1.3e-06 Score=54.93 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.1
Q ss_pred cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+|+++.. +..+|.|.+++.+|+|.|+|.+...... ..+.+.|.|.
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V~ 107 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEVT 107 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 5778864 5678999999999999999999986544 6788888875
No 215
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.34 E-value=1.1e-06 Score=53.04 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=30.9
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
.+.|.|.+++.+|+|.|+|.|.|..|. ..+...|.|.
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMI-AKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceE-ecccEEEEEe
Confidence 457999999999999999999998776 5666666664
No 216
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.33 E-value=2.4e-06 Score=52.34 Aligned_cols=41 Identities=15% Similarity=0.413 Sum_probs=32.7
Q ss_pred ceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
|+.+... .+.|.|.+++.+|+|.|+|.|.|..|. ...++.|
T Consensus 49 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 91 (92)
T cd05747 49 RHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQFTL 91 (92)
T ss_pred cEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEEEEe
Confidence 4455432 357999999999999999999999987 6666655
No 217
>PHA03376 BARF1; Provisional
Probab=98.33 E-value=2.8e-05 Score=52.56 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=51.0
Q ss_pred eEEecCCCeEEEEEEEeec---CCCeEEEEECC----EEe-------------ccCCcEEEEecCceeEEEEccCCCCCC
Q psy12131 58 WIHTAPDMRAEIICNVYAN---PPAKVEWFRDG----TAI-------------TLGGRIDMHVSSEKHSLLVRHIKDTDF 117 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~~~---~~~~~~w~~~~----~~~-------------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 117 (245)
.+.+..|+.+.|.|..... ..-+|.|++.+ ..+ ....++.+..+.++-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3456679999999997522 33479999842 111 112334444455677999999999999
Q ss_pred eEEEEEEEeCCcee
Q psy12131 118 GNYMCQASNNLGSS 131 (245)
Q Consensus 118 g~y~C~~~n~~g~~ 131 (245)
|.|+|..+-.....
T Consensus 100 GtY~C~fQkge~~~ 113 (221)
T PHA03376 100 GNYLCRMKLGETEV 113 (221)
T ss_pred ceEEEEEEcCCCce
Confidence 99999998755433
No 218
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.32 E-value=1.8e-06 Score=51.96 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=31.1
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+..|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus 50 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 85 (85)
T cd05728 50 AGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELAV 85 (85)
T ss_pred CCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEEC
Confidence 456999999999999999999999988 677777654
No 219
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.32 E-value=2.8e-05 Score=49.45 Aligned_cols=74 Identities=20% Similarity=0.439 Sum_probs=52.0
Q ss_pred eecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCE-----Eec--c------------CCcEEEEec--CceeEEEEcc
Q psy12131 54 VEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGT-----AIT--L------------GGRIDMHVS--SEKHSLLVRH 111 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~-----~~~--~------------~~~~~~~~~--~~~~~l~i~~ 111 (245)
..+..+.+.+|+++.|.|... ......+.|++... .+. . ..++.+... .....|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 345677889999999999998 44556899997211 111 0 112222222 2356899999
Q ss_pred CCCCCCeEEEEEEEeC
Q psy12131 112 IKDTDFGNYMCQASNN 127 (245)
Q Consensus 112 ~~~~d~g~y~C~~~n~ 127 (245)
++.+|.|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999999986
No 220
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.31 E-value=3.1e-06 Score=52.50 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=34.9
Q ss_pred cceEEEe---ecceEEEeccCCCCCEEEEEEEEc-CCCCceeeEEEEEEe
Q psy12131 2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~ 47 (245)
+|+.+.. +..+|+|.+++.+|+|.|.|.+.. ..|. ..+.+.|.|.
T Consensus 50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~l~V~ 98 (98)
T cd05718 50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGN-RQKVTTLTVL 98 (98)
T ss_pred ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCc-EEEEEEEEeC
Confidence 4666654 456799999999999999999985 4455 6777877763
No 221
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.31 E-value=1.8e-06 Score=49.91 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.4
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGE 36 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 36 (245)
++.+|.|.+++.+|+|.|+|.|.+....
T Consensus 34 ~~~~L~I~~v~~~D~G~YtC~a~~~~~~ 61 (72)
T cd07702 34 DGYSLVIKDVTEEDAGIYTILLGIKQYN 61 (72)
T ss_pred CCCEEEECcCCHHHCEEEEEEEEccccc
Confidence 4557999999999999999999997554
No 222
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.31 E-value=7.3e-06 Score=50.15 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCeEEEEEEEeecCCCeEEEEECCEEecc------------------CCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131 64 DMRAEIICNVYANPPAKVEWFRDGTAITL------------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 125 (245)
|++|+|.|.........+.|++....... ..++.+. ....|.|.+++.+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY---PNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc---CCceEEEccCCchhcEEEEEEEE
Confidence 68899999987655568999985422110 0112221 23689999999999999999999
Q ss_pred eCCce-eEEEEEE
Q psy12131 126 NNLGS-SQQFIQL 137 (245)
Q Consensus 126 n~~g~-~~~~~~~ 137 (245)
...+. ....+.|
T Consensus 78 ~~~~~~~~~~~~l 90 (92)
T cd05741 78 STNGVTENAKFFL 90 (92)
T ss_pred cCCCcEEEEEEEE
Confidence 87643 3334443
No 223
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.30 E-value=7.4e-06 Score=50.58 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=50.5
Q ss_pred cCCCeEEEEEEEee-cCCCeEEEEECCEEec--c-----------CCcE--EEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131 62 APDMRAEIICNVYA-NPPAKVEWFRDGTAIT--L-----------GGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125 (245)
Q Consensus 62 ~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 125 (245)
..|++|+|.|.... .....+.|++....+. . ...+ ++.......+|+|.+++.+|.|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999998754 3345799997542211 0 0111 12223345789999999999999999999
Q ss_pred eCCcee-EEEEEEE
Q psy12131 126 NNLGSS-QQFIQLS 138 (245)
Q Consensus 126 n~~g~~-~~~~~~~ 138 (245)
+..|.. ...+.|.
T Consensus 82 ~~~~~~~~~~f~L~ 95 (97)
T cd05775 82 TKNGVTITKEFTLH 95 (97)
T ss_pred cCCCCeEEEEEEEE
Confidence 876543 3444443
No 224
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.30 E-value=2.6e-06 Score=51.96 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=29.7
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEE
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNV 46 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v 46 (245)
.+...|.|.++..+|+|.|+|.+.+..+.. ....+.|.|
T Consensus 52 ~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 52 KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRI 93 (95)
T ss_pred CCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence 345679999999999999999999986542 344555544
No 225
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.30 E-value=2.2e-06 Score=54.02 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=36.2
Q ss_pred cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+|+.+.. +..+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|.
T Consensus 56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccc-eEEEEEEEEE
Confidence 4666642 3467999999999999999999987766 6788888875
No 226
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.29 E-value=3.4e-06 Score=53.28 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=37.3
Q ss_pred cceEEE-----eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 2 KEIELL-----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+|+++. .++.+|.|.+++.+|+|.|+|.+...... ..+.+.|.|.
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 577775 24688999999999999999999987666 6888888875
No 227
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.29 E-value=1.7e-06 Score=50.73 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=27.3
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNF 42 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 42 (245)
...|.|.+++.+|+|.|+|.|.|..|. ...++
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~ 73 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGN-DTVTA 73 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCc-eeEEE
Confidence 457999999999999999999999987 44443
No 228
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.28 E-value=3.9e-05 Score=48.57 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=32.5
Q ss_pred ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 103 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
...+|.|.+++.+|.|.|.|.+..........+.|.+.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 35799999999999999999999988777777777653
No 229
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.27 E-value=1.6e-05 Score=50.92 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=48.4
Q ss_pred cceEEecCCCeEEEEEEEeecC----CCeEEEEECCE------Eec----------cCCc----EEEEe--cCceeEEEE
Q psy12131 56 KQWIHTAPDMRAEIICNVYANP----PAKVEWFRDGT------AIT----------LGGR----IDMHV--SSEKHSLLV 109 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~~~~------~~~----------~~~~----~~~~~--~~~~~~l~i 109 (245)
|..+.+..|+.++|.|...... ...+.|++... .+. ...+ +.+.. ......|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4456778999999999986533 14699976211 110 0111 11111 123468999
Q ss_pred ccCCCCCCeEEEEEEEeCCc
Q psy12131 110 RHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 110 ~~~~~~d~g~y~C~~~n~~g 129 (245)
.+++.+|.|.|.|.+.|..+
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999998654
No 230
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.27 E-value=2.8e-06 Score=53.52 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=33.6
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 48 (245)
.+..+|+|.+++.+|+|.|+|.+.+..+. ..+.+.|.|..
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~~ 104 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVRG 104 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEEE
Confidence 35678999999999999999999987655 68888888753
No 231
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.27 E-value=2.8e-06 Score=51.75 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.1
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
...|.|.+++.+|.|.|+|.|.|..|. ..+.+.|.|
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~~~L~v 90 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQ-ANVSVQVTV 90 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCc-eeEEEEEeC
Confidence 456999999999999999999999998 677777654
No 232
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.27 E-value=3.1e-06 Score=53.88 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=33.7
Q ss_pred cceEEE----eecceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12131 2 KEIELL----YNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v 46 (245)
+|+++. .++.+|.|.+++.+|+|.|+|.+.|..+. .....+.|.|
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 477764 45577999999999999999999987653 2345565553
No 233
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.25 E-value=4.4e-06 Score=50.86 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=29.7
Q ss_pred ceEEEeccCCCCCEEEEEEEEc-CCCCceeeEEEEEEec
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIY 48 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~ 48 (245)
..|.|.+++++|+|.|+|.+.+ ..+. ..+.+.|.|..
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~~~l~v~~ 90 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAKYTLHVIE 90 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCeE-EEEEEEEEEec
Confidence 4599999999999999999985 4443 56688888753
No 234
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.25 E-value=1.3e-05 Score=49.33 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=46.9
Q ss_pred EecCCCeEEEEEEEee-cCCCe--EEEEECCEEeccCCcEEE--EecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 60 HTAPDMRAEIICNVYA-NPPAK--VEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~-~~~~~--~~w~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
.+.+|+.++|.|.+.| .|.+. +.|++++..+........ ......+++.+..-..+|...|+|.|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 3578999999999976 45555 799999988864321110 01113456666644444445999999997653
No 235
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.25 E-value=1.6e-05 Score=51.00 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=52.3
Q ss_pred eecceEEecCCCeEEEEEEEeec-CCCeEEEEEC--CEE---e---------ccCCcEEEEe--cCceeEEEEccCCCCC
Q psy12131 54 VEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRD--GTA---I---------TLGGRIDMHV--SSEKHSLLVRHIKDTD 116 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~--~~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d 116 (245)
..+..+.+..|+++.|.|..... ....+.|++- +.. + ....++.+.. ......|.|.++..+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34556778999999999998754 4467999972 111 1 1123455432 2346789999999999
Q ss_pred CeEEEEEEEeC
Q psy12131 117 FGNYMCQASNN 127 (245)
Q Consensus 117 ~g~y~C~~~n~ 127 (245)
.|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999998853
No 236
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.24 E-value=6.8e-06 Score=50.09 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=25.2
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGE 36 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 36 (245)
.+..|.|.+++.+|+|.|+|.+.+..+.
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 4567999999999999999999998766
No 237
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.24 E-value=3.4e-06 Score=51.26 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=32.5
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 48 (245)
...|.|.+++.+|+|.|+|.|.+..+....+++.|.|.+
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 50 EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 345999999999999999999987666578888888753
No 238
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.24 E-value=1.2e-05 Score=47.38 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=42.8
Q ss_pred EEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEe-cC--ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV-SS--EKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+.|.|.+.| .|.+.|.|++++.++.......... .+ ..+.|.+..-...|...|+|.|.|+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 578999976 5667999999998886543211111 11 24577776666666678999999965
No 239
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.24 E-value=4.6e-06 Score=49.08 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=31.2
Q ss_pred ceEEEeecceEEEeccCCC----CCEEEEEEEEcCCCCceeeEEEE
Q psy12131 3 EIELLYNRESLDLDRVTLK----LAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~----d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
++.+...+++|.|..+..+ |.|.|+|.|.|..|...+..+.|
T Consensus 31 ~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 31 KVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 4555555677999888753 78999999999999855555544
No 240
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.23 E-value=4.3e-06 Score=52.91 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.5
Q ss_pred cceEEE-----eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131 2 KEIELL-----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48 (245)
Q Consensus 2 ~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 48 (245)
+|+++. .+.++|+|.+++.+|+|.|.|.+...... ..+.+.|.|..
T Consensus 58 gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 58 GRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred CeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 566664 24577999999999999999999986544 67888888753
No 241
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.22 E-value=1.1e-05 Score=49.62 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=47.2
Q ss_pred cCCCeEEEEEEEeec-CC-CeEEEEECCEEeccCCc-EEEE-ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 62 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGR-IDMH-VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~-~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
..|+.+.|.|.+.|. |. ..+.|++++..+..... .... ..+. .+.|.+......+.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 368899999999997 53 58999999988765542 1111 1111 23455665555689999999998654
No 242
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.22 E-value=4.4e-06 Score=51.37 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+++.. +..+|.|.+++.+|+|.|+|.+.+.... ++...|.|
T Consensus 50 ~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~--~~~~~l~v 95 (95)
T cd07701 50 NRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK--TSKAYLTV 95 (95)
T ss_pred CCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc--cEEEEEEC
Confidence 5666542 3357999999999999999999985433 55555543
No 243
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.21 E-value=1.3e-05 Score=47.83 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=40.4
Q ss_pred EEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 67 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 67 ~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
+.|.|.+.+. |.+.+.|++++..+...........+. .+.|.+......+.+.|+|.+.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 5799999764 778999999998876432111111111 23444444444456799999998754
No 244
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.21 E-value=2.1e-05 Score=48.09 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=50.0
Q ss_pred cccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG 228 (245)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G 228 (245)
....++.+.|.|...+.++. . ..||++.. ....-..+...... ...+.|.++...+...|.|.|.|.+|
T Consensus 12 ~v~eG~~v~L~C~v~g~P~p-~-i~W~k~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 12 TIMEGKTLNLTCTVFGNPDP-E-VIWFKNDQDIELSEHYSVKLEQGK-------YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred EEcCCCEEEEEEEEEEeCCC-e-EEEEECCEECCCCCCEEEEEcCCC-------EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 35788999999998655332 2 34555543 11111122221111 24688999999999999999999999
Q ss_pred CCCCCcceE
Q psy12131 229 WSRPSKAYV 237 (245)
Q Consensus 229 ~~~~s~~~~ 237 (245)
....+..+.
T Consensus 83 ~~~~~~~v~ 91 (92)
T cd05891 83 GETVDVTVS 91 (92)
T ss_pred ceeeEEEEE
Confidence 887765554
No 245
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.20 E-value=2.6e-05 Score=46.55 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=41.9
Q ss_pred EEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCc------eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 67 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 67 ~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
+.|.|.+.+. |.+.|.|++++..+..... .+...+. .+.+.+......+...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 5799999875 7789999999988765432 2222211 13445545555567899999998753
No 246
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.20 E-value=5.5e-06 Score=50.82 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=29.5
Q ss_pred cceEEEee---cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
+|+.+... ..+|.|.+++.+|+|.|+|.+..... ..+...|+
T Consensus 50 ~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~--~~~~~~~~ 94 (95)
T cd05882 50 NRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPV--RTAKATVT 94 (95)
T ss_pred CeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeecc--ccEEEEEE
Confidence 45554432 35799999999999999999997432 34555444
No 247
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.18 E-value=3.7e-05 Score=47.75 Aligned_cols=74 Identities=22% Similarity=0.466 Sum_probs=48.2
Q ss_pred eEEEEEEEeecC---CCeEEEEEC--CE---Eec---c----------CCcEEEEe--cCceeEEEEccCCCCCCeEEEE
Q psy12131 66 RAEIICNVYANP---PAKVEWFRD--GT---AIT---L----------GGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC 122 (245)
Q Consensus 66 ~~~l~C~~~~~~---~~~~~w~~~--~~---~~~---~----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C 122 (245)
++.|.|...... ...+.|++. +. .+. . .++..+.. ......|.|.+++.+|.|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578999886443 337889872 11 111 0 01222221 2235689999999999999999
Q ss_pred EEEe-CCceeEEEEEEEe
Q psy12131 123 QASN-NLGSSQQFIQLSG 139 (245)
Q Consensus 123 ~~~n-~~g~~~~~~~~~~ 139 (245)
.+.+ +.|..+..+.|.+
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 6676666666654
No 248
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.16 E-value=5.4e-05 Score=47.67 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=50.8
Q ss_pred CCeEEEEEEEeecC-------CCeEEEEECC-----EEe----cc----------CCcEEEEe---cCceeEEEEccCCC
Q psy12131 64 DMRAEIICNVYANP-------PAKVEWFRDG-----TAI----TL----------GGRIDMHV---SSEKHSLLVRHIKD 114 (245)
Q Consensus 64 g~~~~l~C~~~~~~-------~~~~~w~~~~-----~~~----~~----------~~~~~~~~---~~~~~~l~i~~~~~ 114 (245)
|.++.|.|...-.| .+.+.|.+-. ... .. ..+..+.. .....+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67889999975322 3588898631 111 01 12333322 12467999999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131 115 TDFGNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 115 ~d~g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
+|.|.|.|.+..........+.|.+.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999877666666666653
No 249
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.16 E-value=8.6e-05 Score=45.04 Aligned_cols=80 Identities=16% Similarity=0.366 Sum_probs=47.9
Q ss_pred CeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEE-ecC----ceeEEEEccCCCCCCeEEEEE
Q psy12131 50 PEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMH-VSS----EKHSLLVRHIKDTDFGNYMCQ 123 (245)
Q Consensus 50 p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~ 123 (245)
|.+.......... ++.+.+.|.+ .+.|.+.+.|+.++..+......... ... ..+.|.+..-...+...++|.
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~ 79 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCR 79 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEE
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEE
Confidence 3444444334333 7899999977 56788999999998776211111111 111 124566665444566789999
Q ss_pred EEeCCce
Q psy12131 124 ASNNLGS 130 (245)
Q Consensus 124 ~~n~~g~ 130 (245)
+.+..-.
T Consensus 80 ~~~~~~~ 86 (89)
T PF08205_consen 80 ASHPALS 86 (89)
T ss_dssp EEETTCC
T ss_pred EECCccC
Confidence 9987543
No 250
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.16 E-value=2e-05 Score=48.48 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=45.5
Q ss_pred ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CC---CCeEEEeeCCCCCCCcceeeeEEEecCCCCCc-eEEEEEEEE
Q psy12131 150 SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-EL---TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT-QYEASVLAK 224 (245)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~y~~~v~a~ 224 (245)
.....++.+.|.|.+.+.++.....+.|.... .. ..+ .+.... ........|.|.++...+ ...|.|.|.
T Consensus 11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~-~I~~~~----~~~g~~S~L~I~~~~~~d~~g~Y~C~a~ 85 (98)
T cd05898 11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERY-TVERTS----TGSGVLSTLTINNIMEADFQTHYNCTAW 85 (98)
T ss_pred EEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCE-EEEEEc----cCCCcEEEEEECCCccccCCcEEEEEEE
Confidence 34578999999999966655543333333222 11 122 111111 111234789999987655 456777799
Q ss_pred ecCCCCCC
Q psy12131 225 NRFGWSRP 232 (245)
Q Consensus 225 N~~G~~~~ 232 (245)
|.+|....
T Consensus 86 N~~G~d~~ 93 (98)
T cd05898 86 NSFGSGTA 93 (98)
T ss_pred eCCccceE
Confidence 99998754
No 251
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.15 E-value=8.6e-06 Score=49.99 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=28.3
Q ss_pred cceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 10 RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 10 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
+..|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 57 ~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 57 DGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 3569999985 6999999999999999865666554
No 252
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.14 E-value=0.0001 Score=45.54 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=31.2
Q ss_pred eeEEEEccCCCCCCeEEEEEEEe-CCceeEEEEEEEe
Q psy12131 104 KHSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLSG 139 (245)
Q Consensus 104 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~~~~ 139 (245)
..+|.|.+++.+|.|.|.|.+.+ +.|..+..+.|.+
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 47899999999999999999999 6787777777765
No 253
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.13 E-value=1e-05 Score=50.13 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=32.0
Q ss_pred cceEEEeec------ceEEEeccCCC-CCEEEEEEEEcCCCCceeeEEEE
Q psy12131 2 KEIELLYNR------ESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 2 ~~~~~~~~~------~~L~i~~~~~~-d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
+|+.+.... +.|.|.+++.+ |.|.|+|.|.|..|. ..+.+.|
T Consensus 49 ~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~-~~~~~~L 97 (98)
T cd05758 49 GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS-GTAIISL 97 (98)
T ss_pred CCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCc-ccEEEEe
Confidence 456665432 46999999994 599999999999998 5666654
No 254
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.12 E-value=1.2e-05 Score=49.21 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=29.1
Q ss_pred cceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 10 RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 10 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
+..|.|.++. .+|+|.|+|.|.|..|...+..+.|.
T Consensus 56 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 56 GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 4569999985 68999999999999998656666553
No 255
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.10 E-value=1.7e-05 Score=48.59 Aligned_cols=43 Identities=26% Similarity=0.242 Sum_probs=32.0
Q ss_pred cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
+|+.+.. .+.+|.|.|++.+|+|.|+|.+.........+.+.+
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 5777763 357799999999999999999987643324555443
No 256
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.09 E-value=1.9e-05 Score=48.48 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=29.2
Q ss_pred cceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 10 RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 10 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
+..|.|.++. ..|+|.|+|.|.|..|...+..+.|.
T Consensus 57 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 57 AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 3469998865 59999999999999998767666653
No 257
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.08 E-value=1.4e-05 Score=49.17 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=30.3
Q ss_pred cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+++.. +...|.|.+++.+|+|.|+|.+..... ..+.+.|+|
T Consensus 50 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~--~~~~~~~~v 95 (95)
T cd05717 50 NRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV--QTAKATVTV 95 (95)
T ss_pred CcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC--ceEEEEEEC
Confidence 4555532 235699999999999999999997643 355555543
No 258
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.07 E-value=9.1e-05 Score=44.73 Aligned_cols=77 Identities=29% Similarity=0.460 Sum_probs=57.3
Q ss_pred CCCeeEEEEEeCCC--CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131 154 GPDGYRLVWQVDTY--SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231 (245)
Q Consensus 154 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~ 231 (245)
...++.|.|..... ..+..|.+++.... ...|..+...... ...+.+.+|.+++.|.+++.|.+..|.|.
T Consensus 13 ~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~ 84 (93)
T cd00063 13 TSTSVTLSWTPPEDDGGPITGYVVEYREKG-SGDWKEVEVTPGS-------ETSYTLTGLKPGTEYEFRVRAVNGGGESP 84 (93)
T ss_pred cCCEEEEEECCCCCCCCcceeEEEEEeeCC-CCCCEEeeccCCc-------ccEEEEccccCCCEEEEEEEEECCCccCC
Confidence 35789999998433 35678999988764 4567665443111 26789999999999999999999988887
Q ss_pred CCcceEE
Q psy12131 232 PSKAYVF 238 (245)
Q Consensus 232 ~s~~~~~ 238 (245)
++....+
T Consensus 85 ~s~~~~~ 91 (93)
T cd00063 85 PSESVTV 91 (93)
T ss_pred Ccccccc
Confidence 7764444
No 259
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.06 E-value=9e-05 Score=50.29 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=56.1
Q ss_pred eEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEec----------c--CCcEE-EEecCceeEEEEccCCCCCCeEEEEE
Q psy12131 58 WIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAIT----------L--GGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQ 123 (245)
Q Consensus 58 ~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~ 123 (245)
.+.+.+|+++.|.|... +...+.+.|.+....+. . .+++. .......+.++|.++..+|.|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45678999999999985 55667999998532221 0 12333 22333457899999999999999999
Q ss_pred EEe-CCc-eeEEEEEEEec
Q psy12131 124 ASN-NLG-SSQQFIQLSGI 140 (245)
Q Consensus 124 ~~n-~~g-~~~~~~~~~~~ 140 (245)
..- +.| ..+...-|.+.
T Consensus 104 F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEecCCCCCceeEEEEEEE
Confidence 775 345 44455555543
No 260
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.06 E-value=7.4e-05 Score=44.17 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=50.6
Q ss_pred EecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131 60 HTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~ 137 (245)
.+..|++++|.|.....+.| .+.|..-+...... ......+|.+..+...|.|.++|.+....-.....+.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee------ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 46789999999999654454 99998643321110 01133478999999999999999998665444455555
Q ss_pred Ee
Q psy12131 138 SG 139 (245)
Q Consensus 138 ~~ 139 (245)
.+
T Consensus 84 ~V 85 (88)
T cd07694 84 KV 85 (88)
T ss_pred EE
Confidence 44
No 261
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.05 E-value=0.00015 Score=45.79 Aligned_cols=67 Identities=13% Similarity=0.360 Sum_probs=41.3
Q ss_pred ecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecCc-----eeEEEEccCCCCCCe-EEEEEEEeCC
Q psy12131 61 TAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSE-----KHSLLVRHIKDTDFG-NYMCQASNNL 128 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g-~y~C~~~n~~ 128 (245)
...|+.++|.|.+.|.-+ ..+.|++|+..+............. .+.|.+.. ...|.+ .|+|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 456888999999988544 4899999999876432221111111 22344443 333433 5999999864
No 262
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.05 E-value=6e-05 Score=44.95 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=40.6
Q ss_pred EEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+.|.|.+.| .|...+.|++++..+............ ..+.|.+..-...+...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 679999977 566799999999987543322221111 12355565444556678999999864
No 263
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.05 E-value=1.5e-05 Score=49.07 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=29.3
Q ss_pred ceEEEecc-----CCCCCEEEEEEEEcC-CCCceeeEEEEEE
Q psy12131 11 ESLDLDRV-----TLKLAGLYQCIASNN-IGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~-----~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v 46 (245)
.+|.|.++ ..+|.|.|+|.|.|. .|...+..+.|.|
T Consensus 54 ~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 54 GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 34778777 689999999999999 8886677777764
No 264
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.04 E-value=7.1e-05 Score=44.14 Aligned_cols=72 Identities=11% Similarity=-0.065 Sum_probs=45.3
Q ss_pred CCeeEEEEEeCCCC-CceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131 155 PDGYRLVWQVDTYS-GIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS 230 (245)
Q Consensus 155 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~ 230 (245)
++.+.|.|.+.+.+ |... |+++.. ..... .+.... ....+.|.++...+.+.|.|.|.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~---W~~~~~~~~~~~~~-~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIIN---WRLNWGHVPDSARV-SITSEG--------GYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEE---EEECCeECCCCCCE-EEEECC--------CEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 46789999996654 3222 334322 11111 111111 12578999999999999999999999987
Q ss_pred CCCcceEE
Q psy12131 231 RPSKAYVF 238 (245)
Q Consensus 231 ~~s~~~~~ 238 (245)
...+.+.+
T Consensus 69 ~~~~~~~~ 76 (78)
T cd05743 69 FGIPDGIL 76 (78)
T ss_pred EecccEEE
Confidence 66555544
No 265
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.02 E-value=5.8e-05 Score=46.63 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=48.0
Q ss_pred CCeEEEEEEEeecCCC-eEEEEECCE----Eec-----c--------CCcEEE-EecCceeEEEEccCCCCCCeEEEEEE
Q psy12131 64 DMRAEIICNVYANPPA-KVEWFRDGT----AIT-----L--------GGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQA 124 (245)
Q Consensus 64 g~~~~l~C~~~~~~~~-~~~w~~~~~----~~~-----~--------~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~ 124 (245)
|++++|.|........ .+.|++... .+. . ..+..+ ........|.|.+++.+|.|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999987544332 699987321 110 0 011111 11234578999999999999999998
Q ss_pred Ee-CCceeEEEEEEEe
Q psy12131 125 SN-NLGSSQQFIQLSG 139 (245)
Q Consensus 125 ~n-~~g~~~~~~~~~~ 139 (245)
.. +.|.....+.|.+
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 75 4566555555554
No 266
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.01 E-value=0.00014 Score=44.47 Aligned_cols=75 Identities=19% Similarity=0.444 Sum_probs=48.9
Q ss_pred CeEEEEEEEeecCC-CeEEEEECC----EEecc-------------CCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131 65 MRAEIICNVYANPP-AKVEWFRDG----TAITL-------------GGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS 125 (245)
Q Consensus 65 ~~~~l~C~~~~~~~-~~~~w~~~~----~~~~~-------------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~ 125 (245)
+++.|.|.....+. .++.|.+.. ..+.. ..+..+. ......+|.|.++..+|.|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36789999864332 378897732 12210 1122221 12235689999999999999999976
Q ss_pred e-CCceeEEEEEEEe
Q psy12131 126 N-NLGSSQQFIQLSG 139 (245)
Q Consensus 126 n-~~g~~~~~~~~~~ 139 (245)
. +.|+...++.|.+
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 5 6788888777765
No 267
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.01 E-value=2.2e-05 Score=48.24 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=30.3
Q ss_pred EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
.++..+..|.|.++..+|+|.|+|.+.|...- ..-.+.|+
T Consensus 64 Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C-~~~~i~l~ 103 (104)
T cd05896 64 RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC-MKVSMSLT 103 (104)
T ss_pred eEEEeCCEEEEEeCChhhCeEEEEEECCCCcc-eEEEEEEE
Confidence 34445677999999999999999999987643 34455554
No 268
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.01 E-value=7.7e-06 Score=49.91 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE 36 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 36 (245)
.|..+......|.|.+++++|+|.|+|.|.|....
T Consensus 51 ~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 51 GRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 34445554566999999999999999999997543
No 269
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.00 E-value=6.3e-05 Score=46.58 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=48.6
Q ss_pred EEecCCCeEEEEEEEee-cCCCeEEEEECCE-----Ee--------ccCCcEEEEe--cCceeEEEEccCCCCCCeEEEE
Q psy12131 59 IHTAPDMRAEIICNVYA-NPPAKVEWFRDGT-----AI--------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC 122 (245)
Q Consensus 59 ~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~-----~~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C 122 (245)
+.+.+|++++|.|.... .....+.|++... .+ ....++.+.. ......|.|.+++.+|.|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 34678999999999865 3456789997431 11 1123444432 2345689999999999999999
Q ss_pred EEEeCC
Q psy12131 123 QASNNL 128 (245)
Q Consensus 123 ~~~n~~ 128 (245)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988754
No 270
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.98 E-value=0.00011 Score=47.22 Aligned_cols=72 Identities=15% Similarity=0.321 Sum_probs=48.7
Q ss_pred cceEEecCCCeEEEEEEEeecC------CCeEEEEECCE------Eec-----------cCCcEEEE--ecCceeEEEEc
Q psy12131 56 KQWIHTAPDMRAEIICNVYANP------PAKVEWFRDGT------AIT-----------LGGRIDMH--VSSEKHSLLVR 110 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~w~~~~~------~~~-----------~~~~~~~~--~~~~~~~l~i~ 110 (245)
|..+.+..|+.++|.|...... ...+.|++... .+. ...++.+. .......|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4456788999999999875322 24689997321 110 01233332 13345789999
Q ss_pred cCCCCCCeEEEEEEEeC
Q psy12131 111 HIKDTDFGNYMCQASNN 127 (245)
Q Consensus 111 ~~~~~d~g~y~C~~~n~ 127 (245)
+++.+|.|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 271
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.97 E-value=7.4e-05 Score=46.79 Aligned_cols=66 Identities=18% Similarity=0.412 Sum_probs=45.5
Q ss_pred ecCCCeEEEEEEEeecCCCeEEEEECCE----E---ec---c------------CCcEEEEecCceeEEEEccCCCCCCe
Q psy12131 61 TAPDMRAEIICNVYANPPAKVEWFRDGT----A---IT---L------------GGRIDMHVSSEKHSLLVRHIKDTDFG 118 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~----~---~~---~------------~~~~~~~~~~~~~~l~i~~~~~~d~g 118 (245)
+..|+.++|.|.........+.|++-.. . +. . ..++..........|.|.+++.+|.|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 5689999999998655456799997221 1 10 0 11233323345668999999999999
Q ss_pred EEEEEEEe
Q psy12131 119 NYMCQASN 126 (245)
Q Consensus 119 ~y~C~~~n 126 (245)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998764
No 272
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.95 E-value=1.5e-05 Score=47.96 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=28.4
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
++.|.|.+++.+|+|.|+|.|.|..|. ..+.+.|
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l 84 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDT-DEATATL 84 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEEE
Confidence 457999999999999999999999887 4555543
No 273
>smart00409 IG Immunoglobulin.
Probab=97.95 E-value=6e-05 Score=44.91 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=33.5
Q ss_pred cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+++.+.... ..|.|.+++.+|+|.|+|.+.+..+. ....+.|.|
T Consensus 40 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~-~~~~~~l~V 85 (86)
T smart00409 40 GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS-ASSTTTLTV 85 (86)
T ss_pred CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe-EEEEEEEEE
Confidence 345555544 67999999999999999999987766 444466665
No 274
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.95 E-value=6e-05 Score=44.91 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=33.5
Q ss_pred cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+++.+.... ..|.|.+++.+|+|.|+|.+.+..+. ....+.|.|
T Consensus 40 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~-~~~~~~l~V 85 (86)
T smart00410 40 GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS-ASSTTTLTV 85 (86)
T ss_pred CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe-EEEEEEEEE
Confidence 345555544 67999999999999999999987766 444466665
No 275
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.95 E-value=2.5e-05 Score=49.86 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=28.9
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v 46 (245)
+..+|.|.+++.+|+|.|+|.+.+..+. .....+.|.|
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 4567999999999999999999986553 2345565543
No 276
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.94 E-value=2.8e-05 Score=44.63 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=25.7
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
...|.|.+++ |+|.|+|.|.|..|. ..+++.|
T Consensus 37 ~~~L~i~~~~--d~G~Y~C~A~N~~G~-~~~~a~l 68 (69)
T cd05739 37 RNVLELTNIY--ESANYTCVAISSLGM-IEATAQV 68 (69)
T ss_pred ccEEEEeccc--cCeeEEEEEEeCCCE-EEEEEEE
Confidence 4569999974 899999999999987 5666554
No 277
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.93 E-value=0.00024 Score=43.50 Aligned_cols=74 Identities=26% Similarity=0.426 Sum_probs=42.0
Q ss_pred CCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE-EEEec-Cc----eeEEEEccCCCCCCeEE
Q psy12131 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI-DMHVS-SE----KHSLLVRHIKDTDFGNY 120 (245)
Q Consensus 49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~-~~----~~~l~i~~~~~~d~g~y 120 (245)
+|.+...+... .++.+.|.|.+.|..++ .+.|++++......... ..... +. .+.|.+ ...+...|
T Consensus 2 pP~v~v~~~~~---~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~y 75 (93)
T cd07698 2 PPEVRVTRKRA---PDGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARY 75 (93)
T ss_pred CCEEEEEecCC---CCCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCEE
Confidence 45554443322 16789999999996443 89999998633222111 11111 11 122333 33467899
Q ss_pred EEEEEeCC
Q psy12131 121 MCQASNNL 128 (245)
Q Consensus 121 ~C~~~n~~ 128 (245)
+|.+.+..
T Consensus 76 tC~V~H~~ 83 (93)
T cd07698 76 SCRVEHSG 83 (93)
T ss_pred EEEEEeCC
Confidence 99988754
No 278
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.93 E-value=4.4e-05 Score=46.64 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.7
Q ss_pred CcceEEEe---ecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131 1 EKEIELLY---NRESLDLDRVTLKLAGLYQCIASNNI 34 (245)
Q Consensus 1 ~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~ 34 (245)
|.|+++.. ...+|+|.+++.+|+|.|+|.+....
T Consensus 49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred CcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEccc
Confidence 45777665 23459999999999999999998643
No 279
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.93 E-value=9.8e-05 Score=42.05 Aligned_cols=62 Identities=24% Similarity=0.500 Sum_probs=44.6
Q ss_pred EEEEEEEeecCCCeEEEEECCEEeccCCcE----EEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 67 AEIICNVYANPPAKVEWFRDGTAITLGGRI----DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+.|.|.+.+.+...+.|++.+......... ..........+.+..+...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368899988677799999987665433211 11112235678999999999999999998865
No 280
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.92 E-value=3.3e-05 Score=49.45 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=31.2
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN 45 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 45 (245)
+|+.+.. +..+|+|.+++.+|+|.|.|.+.+..... ....+.|.
T Consensus 67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 4566543 24679999999999999999999765431 23455554
No 281
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.91 E-value=2e-05 Score=46.46 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=27.3
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
..+..|.|.++ .+|+|.|+|.|.+. . .+..+.|.|
T Consensus 44 ~~~~~l~i~~~-~~dsG~Y~C~a~~~--~-~S~~v~l~V 78 (78)
T cd05752 44 TTTNSYRIRAA-NNDSGEYRCQTQGS--S-LSDPVHLEV 78 (78)
T ss_pred ccCCeEEEeec-ccCCEEeEEECCCC--c-CCCCEEEeC
Confidence 45567999999 99999999999875 2 466666654
No 282
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.91 E-value=9.7e-05 Score=46.54 Aligned_cols=67 Identities=16% Similarity=0.371 Sum_probs=45.4
Q ss_pred EecCCCeEEEEEEEeec-CCCeEEEEECCEE---------e--c-----------cCCcEEEE--ecCceeEEEEccCCC
Q psy12131 60 HTAPDMRAEIICNVYAN-PPAKVEWFRDGTA---------I--T-----------LGGRIDMH--VSSEKHSLLVRHIKD 114 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~~---------~--~-----------~~~~~~~~--~~~~~~~l~i~~~~~ 114 (245)
.+.+|+.++|.|...+. ....+.|++-... + . ...++.+. .......|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998754 3457999972210 0 0 01234332 223346799999999
Q ss_pred CCCeEEEEEEEe
Q psy12131 115 TDFGNYMCQASN 126 (245)
Q Consensus 115 ~d~g~y~C~~~n 126 (245)
+|.|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999763
No 283
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.91 E-value=3.2e-05 Score=47.80 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=30.8
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+.++|+|.+++.+|+|.|+|.+........+..+.|+|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 45679999999999999999988654333677788876
No 284
>PHA02633 hypothetical protein; Provisional
Probab=97.90 E-value=5.3e-05 Score=41.16 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 50 (245)
++..|.|-++..+|+|.|.|...|..-. ..-++.|+|...+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEeecc
Confidence 5566999999999999999999975433 4556777776443
No 285
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.90 E-value=3.2e-05 Score=46.36 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=29.8
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
..|.|.+++.+|+|.|+|.+.|..|. ..+++.|.|
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l~v 85 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGS-INHTYKVDV 85 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCce-EEEEEEEeC
Confidence 46999999999999999999999887 577776653
No 286
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.88 E-value=0.00041 Score=42.23 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=39.6
Q ss_pred cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE-EEecCceeEEEE---ccCCCCCCeEEEEEEEeCC
Q psy12131 62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID-MHVSSEKHSLLV---RHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~ 128 (245)
..|....|.|.+.|.-++ .+.|+++|..+. +.... ...++ ..++++ -.+.+.+...|.|.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~-d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSK-DWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECC-CCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 346667899999996444 789999999876 32211 11111 112221 1234556778999988753
No 287
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.84 E-value=6.8e-05 Score=46.49 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=24.8
Q ss_pred cCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 18 VTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 18 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEe
Confidence 36899999999999999986677777776
No 288
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.82 E-value=5.1e-05 Score=48.27 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=32.5
Q ss_pred cceEEEeecc----eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+|+.+..+.. +|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 4666665544 79999999999999999999873332444555554
No 289
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.79 E-value=0.00054 Score=40.06 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=45.6
Q ss_pred CCeeEEEEEeCCCCCceEEEEEEEeecCC--CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131 155 PDGYRLVWQVDTYSGIIQYLLKFREREEL--TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229 (245)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~ 229 (245)
..++.|+|.+........|.+.|...... ..|........ ...+.+.+|.++..|.++|.|.+..|.
T Consensus 14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 14 STSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPS--------STSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred CCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCC--------ccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 44899999964322215677777665411 23554443332 267899999999999999999998664
No 290
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.78 E-value=0.01 Score=46.17 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=58.9
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEECC
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRDG 87 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~ 87 (245)
.|.|..++..++|.|+=+..+..+.. ....+.+....+|.+...+.. +.+|+...-.|.+..+-++ .+.|++++
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 49999999999999986655543431 345555555778887766543 5689999999999765444 79999999
Q ss_pred EEec
Q psy12131 88 TAIT 91 (245)
Q Consensus 88 ~~~~ 91 (245)
.++.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 9887
No 291
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.78 E-value=5.8e-05 Score=42.05 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=25.0
Q ss_pred EEeecceEEEeccCCCCCEEEEEEEEcCCC
Q psy12131 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIG 35 (245)
Q Consensus 6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 35 (245)
.......|.|.+++..|+|.|+|.+.+..|
T Consensus 34 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 34 LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 334556799999999999999999998654
No 292
>KOG4367|consensus
Probab=97.77 E-value=4.4e-05 Score=58.04 Aligned_cols=92 Identities=23% Similarity=0.346 Sum_probs=73.1
Q ss_pred CCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131 141 PNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218 (245)
Q Consensus 141 ~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 218 (245)
|..|++....--....+++|.|..+ ...|+-+|.++..+.. ++++..+..... +-+++.+|.-.+.|.
T Consensus 438 patpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~-~g~frevy~g~e---------tmctvdglhfns~y~ 507 (699)
T KOG4367|consen 438 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGN-GGQFREVYVGKE---------TMCTVDGLHFNSTYN 507 (699)
T ss_pred CCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCC-CCceeEEEecCc---------eeEEecceecchhHH
Confidence 3344444444445678999999953 3357889999988874 888988887655 679999999999999
Q ss_pred EEEEEEecCCCCCCCcceEEecCC
Q psy12131 219 ASVLAKNRFGWSRPSKAYVFATEG 242 (245)
Q Consensus 219 ~~v~a~N~~G~~~~s~~~~~~t~~ 242 (245)
.||.|.|..|.+++|..+..+|..
T Consensus 508 arvka~n~tg~s~ys~tl~lqts~ 531 (699)
T KOG4367|consen 508 ARVKAFNKTGVSPYSKTLVLQTSE 531 (699)
T ss_pred HHHHHhhccCCCcccceeEeeecc
Confidence 999999999999999988887764
No 293
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.77 E-value=0.00051 Score=41.83 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=50.1
Q ss_pred cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEec-CCC
Q psy12131 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR-FGW 229 (245)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~-~G~ 229 (245)
.+..|+.|+|+|..+. +...|. ++++.. ...+... .. ......|.|..+.+.+.+.|+|++.|. .+.
T Consensus 12 vV~~G~~VtL~C~~~~--~~~~f~-l~k~g~-~~~~~~~-~~-------~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~ 79 (91)
T cd05751 12 VVPLGKPVTLRCQGPY--GAVEYR-LYREGS-TFAVKKP-PE-------PQNKAKFFIPSMKREHAGRYRCYYRSGVALW 79 (91)
T ss_pred ccCCCCcEEEEEecCC--CCCEEE-EEECCC-Ccccccc-CC-------CceeEEEEccCCChhHCEEEEEEEECCCCcc
Confidence 3578999999998753 333443 455533 1112111 00 112367899999999999999999998 677
Q ss_pred CCCCcceEEe
Q psy12131 230 SRPSKAYVFA 239 (245)
Q Consensus 230 ~~~s~~~~~~ 239 (245)
+..|+.+.+.
T Consensus 80 S~~Sd~lel~ 89 (91)
T cd05751 80 SEPSDPLELV 89 (91)
T ss_pred CCCCCcEEEE
Confidence 8888877653
No 294
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.75 E-value=6.3e-05 Score=45.85 Aligned_cols=30 Identities=40% Similarity=0.526 Sum_probs=24.7
Q ss_pred cceEEEeccCC-CCCEEEEEEEEcCCCCcee
Q psy12131 10 RESLDLDRVTL-KLAGLYQCIASNNIGESTS 39 (245)
Q Consensus 10 ~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~ 39 (245)
...|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 57 ~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 57 GGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 34699998875 8999999999999987433
No 295
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.75 E-value=2.4e-05 Score=47.68 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=28.8
Q ss_pred CcceEEEeecceEEEeccCCCCCE-EEEEEEEcCCC
Q psy12131 1 EKEIELLYNRESLDLDRVTLKLAG-LYQCIASNNIG 35 (245)
Q Consensus 1 ~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~ 35 (245)
++|+.+..+ ..|.|.+++.+|+| .|.|.|.+...
T Consensus 49 ~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 49 DERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cccEEECCC-ceEEEEEEehhhCCCCeEEEEEcccc
Confidence 468888766 45999999999999 89999998753
No 296
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.74 E-value=6.2e-05 Score=45.18 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.0
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNI 34 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 34 (245)
|+.+.+ ..|.|.+++.+|+|.|+|.+.+..
T Consensus 42 r~~~~~--~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 42 KYLLYR--DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred eEEEEC--CcEEEeCCCHHHCEEEEEEEEecc
Confidence 444432 349999999999999999999763
No 297
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.73 E-value=0.00037 Score=44.64 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=47.4
Q ss_pred cceEEecCCCeEEEEEEEeecC--CCeEEEEEC--C-EE--e---c-----------cCCcEEEEecC--ceeEEEEccC
Q psy12131 56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--G-TA--I---T-----------LGGRIDMHVSS--EKHSLLVRHI 112 (245)
Q Consensus 56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~-~~--~---~-----------~~~~~~~~~~~--~~~~l~i~~~ 112 (245)
|....+.+|+.++|.|...+.. ...+.|++- + .+ + . ...++...... ....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4456688999999999976433 456899871 1 11 1 0 01234333222 3357999999
Q ss_pred CCCCCeEEEEEEEe
Q psy12131 113 KDTDFGNYMCQASN 126 (245)
Q Consensus 113 ~~~d~g~y~C~~~n 126 (245)
..+|.|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998764
No 298
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.71 E-value=0.00085 Score=40.99 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE-EEec-Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID-MHVS-SE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
.+...+|.|.+.|.-+ ..+.|.++|..+..+.... ...+ +. .+.|.+. +.+...|+|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 4566799999999544 3789999998875432111 1111 11 1233333 234557888877653
No 299
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.66 E-value=0.0014 Score=40.13 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=29.5
Q ss_pred ceeEEEEccCCCCCCeEEEEEEEe-CCceeEEEEEEE
Q psy12131 103 EKHSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLS 138 (245)
Q Consensus 103 ~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~~~ 138 (245)
...++.|.++..+|.|.|.|.+.. +.|...+.+.+.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 357899999999999999999876 467777776654
No 300
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.66 E-value=0.015 Score=44.63 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=54.5
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe-cCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEEC
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI-YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRD 86 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~ 86 (245)
.|.|.++...|+|.|+....+..... ..+.+.+.+. -+|.+...+.. +..|+...-.|.+..+-+| .+.|+++
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 49999999999997766655543332 2233334443 46666665433 5689999999999776444 7999999
Q ss_pred CEEecc
Q psy12131 87 GTAITL 92 (245)
Q Consensus 87 ~~~~~~ 92 (245)
|..+..
T Consensus 286 G~~V~~ 291 (490)
T PHA03271 286 GNIATP 291 (490)
T ss_pred CccccC
Confidence 987654
No 301
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.63 E-value=3.2e-05 Score=47.22 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=23.5
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGE 36 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 36 (245)
..+|+|.+++.+|+|.|+|.+.|..+.
T Consensus 64 ~~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 64 SFPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred eEEEEECCCCHHHCEEEEEEECCccce
Confidence 356999999999999999999987654
No 302
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.63 E-value=0.00023 Score=42.49 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=28.8
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
|+..... .|.|.+++.+|+|.|+|.+.-..-....+.+.|.|.
T Consensus 41 r~~~~~~--GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v~ 83 (85)
T cd05872 41 SYRVGTD--GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV 83 (85)
T ss_pred ceEEeCC--CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEEe
Confidence 4444433 388999999999999999984322224556666553
No 303
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.63 E-value=0.00018 Score=42.44 Aligned_cols=36 Identities=36% Similarity=0.460 Sum_probs=29.4
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
..|.|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus 45 ~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 45 NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 338889999999999999999976655677777765
No 304
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.62 E-value=0.0011 Score=38.66 Aligned_cols=62 Identities=27% Similarity=0.437 Sum_probs=38.4
Q ss_pred EEEEEEEeec-CC-CeEEEEECCEEeccCCcE-EEEec-Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 67 AEIICNVYAN-PP-AKVEWFRDGTAITLGGRI-DMHVS-SE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 67 ~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~-~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+.|.|.+.|. |. ..+.|++++..+..+... ..... +. .+.|.+......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5799999986 33 489999999874432111 11111 11 2345555545566779999998753
No 305
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.62 E-value=0.02 Score=44.97 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=60.3
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCC-CC-ceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNI-GE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFR 85 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~ 85 (245)
-.|.|.+++..++|.|+=+..+.. +. .....+.+.+..+|.+...+.. +.+|+...-.|.+..+-++ .+.|++
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEe
Confidence 349999999999999986655432 22 2456777777788877666543 5689999999999765444 799999
Q ss_pred CCEEecc
Q psy12131 86 DGTAITL 92 (245)
Q Consensus 86 ~~~~~~~ 92 (245)
|+.++..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9888774
No 306
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.59 E-value=0.00044 Score=42.90 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=40.6
Q ss_pred ecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE-E-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 61 TAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI-D-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
...++.++|.|.+.|..+ ..+.|++++..+..+... . ....+. .+.|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 335778999999988543 489999999887533111 0 111111 1234343333334568999988754
No 307
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.56 E-value=0.0038 Score=38.18 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=38.6
Q ss_pred cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCc-EEEEecCc-----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-IDMHVSSE-----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
..++.+.|.|.+.|..++ .+.|++++..+..+.. .....+++ .+.|.+ ...+...|.|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 357889999999985443 7899999988765411 11111111 122322 2335557888887754
No 308
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.55 E-value=0.00017 Score=42.82 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.8
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
.+.|.|.++ .|+|.|.|.|.|..|...+..+.|
T Consensus 48 ~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 48 PSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 456999887 588999999999999755555544
No 309
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.52 E-value=0.00077 Score=39.82 Aligned_cols=58 Identities=21% Similarity=0.451 Sum_probs=37.2
Q ss_pred EEEEEEEeecCCC--eEEEEECCE-----Eec-------------cCCcEEEEec--CceeEEEEccCCCCCCeEEEEEE
Q psy12131 67 AEIICNVYANPPA--KVEWFRDGT-----AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQA 124 (245)
Q Consensus 67 ~~l~C~~~~~~~~--~~~w~~~~~-----~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~ 124 (245)
+.|.|.......+ .+.|++... .+. ...++.+... .....|.|.+++.+|.|.|.|.+
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 6788887655443 678876321 010 1123333332 45678999999999999999963
No 310
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.47 E-value=0.0002 Score=45.28 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=26.5
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNI 34 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~ 34 (245)
+|+++.. +..+|+|.+++.+|+|.|.|.+.+..
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 4665553 45679999999999999999999754
No 311
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.47 E-value=0.00074 Score=41.46 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=57.6
Q ss_pred cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS 230 (245)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~ 230 (245)
.+..+..+.|.|..+.+|++.++.+.+-.......+... . .........+...+.+..|.....+.|.+.|.|+.+..
T Consensus 14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~-~-~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHY-V-KSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccce-e-EEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 356788999999998888876565443322212222221 1 11111334567888999998888888888899999888
Q ss_pred CCCcceEEec
Q psy12131 231 RPSKAYVFAT 240 (245)
Q Consensus 231 ~~s~~~~~~t 240 (245)
..+-.+.++|
T Consensus 92 s~tF~l~v~~ 101 (101)
T cd05860 92 SVTFNVYVNT 101 (101)
T ss_pred EEEEEEEEeC
Confidence 7776666654
No 312
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.40 E-value=0.0024 Score=39.07 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=40.5
Q ss_pred CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE--EEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI--DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
....+.|.|.+.|.-+ ..+.|++++..+...... .....+. .+.|.+..-...+...|.|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4566899999998544 378999999876332111 1111111 123444433333557899999986543
No 313
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.39 E-value=0.00063 Score=41.62 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=37.0
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+|+.+...+-.|.|..+++.|+|.|.-++.+..|..-.+.+.+.|.
T Consensus 62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 4778888888899999999999999999999999866666666553
No 314
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.34 E-value=0.00035 Score=40.52 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=22.4
Q ss_pred EeecceEEEeccCCCCCEEEEEEEEc
Q psy12131 7 LYNRESLDLDRVTLKLAGLYQCIASN 32 (245)
Q Consensus 7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~ 32 (245)
....+.|.|.++..+|.|.|+|.|.|
T Consensus 50 ~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 50 SSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred cceeeEEEEccCCHHhCcEEEEEEEC
Confidence 34456799999999999999999986
No 315
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.33 E-value=0.0002 Score=40.31 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=17.4
Q ss_pred EEEeccCCCCCEEEEEEE
Q psy12131 13 LDLDRVTLKLAGLYQCIA 30 (245)
Q Consensus 13 L~i~~~~~~d~G~Y~C~~ 30 (245)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 316
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.29 E-value=0.0018 Score=40.32 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=39.2
Q ss_pred cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEE--Eec---Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDM--HVS---SE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~--~~~---~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
..+..++|.|.+.|..+. .+.|++++..+........ ... +. .+.|.+..-...+...|.|.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 356789999999986554 6899999987654321111 100 01 1234443222234457999888754
No 317
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.27 E-value=0.00046 Score=43.22 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=26.6
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCCC
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNIG 35 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 35 (245)
+|+.+.. +..+|+|.+++.+|+|.|.|.+.+..+
T Consensus 54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 4555543 335799999999999999999997654
No 318
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.24 E-value=0.06 Score=41.75 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=61.7
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEECC
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRDG 87 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~ 87 (245)
.|.|..++...+|.|+=...+..+.. ..+.+.+....+|.+...+.. +..|+...-.|.+..+-++ .+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 39999999999999999877655432 455677777788887766543 5689999999999765444 79999999
Q ss_pred EEecc
Q psy12131 88 TAITL 92 (245)
Q Consensus 88 ~~~~~ 92 (245)
.++..
T Consensus 261 ~~V~~ 265 (466)
T PHA03270 261 DEVFA 265 (466)
T ss_pred ccccC
Confidence 88753
No 319
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.22 E-value=0.0063 Score=37.29 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=38.1
Q ss_pred CCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 64 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 64 g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
.....+.|.+ .|.|.+.|.|+++..... ........++. .+.|.+......+...|+|.+.+..-.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 3456778998 578889999998621100 00000111111 345666555555556899999987643
No 320
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.18 E-value=0.0094 Score=35.49 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEE-E-ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDM-H-VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
.+..+.|.|.+.+..+. .+.|++++..+........ . ..++ .+.|.+. ..+...|.|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48899999999885443 7999999988765432221 1 1121 2344454 4455689999987653
No 321
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.18 E-value=0.0067 Score=38.57 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=43.6
Q ss_pred CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE--EEEecC-c----eeEEEEccCCCCC-CeEEEEEEEeCCceeE
Q psy12131 63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI--DMHVSS-E----KHSLLVRHIKDTD-FGNYMCQASNNLGSSQ 132 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~--~~~~~~-~----~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~ 132 (245)
.+..+.|.|.+.+.-+. .+.|++++..+..+... .....+ . .+.|.+..-...+ ...|.|.+........
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 56778999999985443 78999999877643211 111111 1 2344444333223 4689999998755444
Q ss_pred EEE
Q psy12131 133 QFI 135 (245)
Q Consensus 133 ~~~ 135 (245)
...
T Consensus 97 ~~~ 99 (115)
T cd05769 97 DKW 99 (115)
T ss_pred eee
Confidence 433
No 322
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.17 E-value=0.00036 Score=41.27 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=22.8
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEE
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIA 30 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~ 30 (245)
+|+.+.. +..+|.|.+++.+|+|.|.|.+
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 4666553 3366999999999999999963
No 323
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.16 E-value=0.0013 Score=36.50 Aligned_cols=52 Identities=15% Similarity=0.357 Sum_probs=35.6
Q ss_pred cCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
..|..|+|+|..... .+.|.+++..+.... ..+.+.+.. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCCC
Confidence 468999999986522 399999885544321 134444455 7899999999753
No 324
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.15 E-value=0.0045 Score=37.88 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=41.4
Q ss_pred CCeEEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131 64 DMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137 (245)
Q Consensus 64 g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~ 137 (245)
...+.+.|.+. |.|.+.|.|+++..... ........++. .+.|.+......+...|.|.+.+..-.....+.+
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 34567899875 67888999998721110 00111111111 2456665545555668999999976444444433
No 325
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.14 E-value=0.0013 Score=44.88 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=33.2
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcC-CCCceeeEEEEEEecC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYP 49 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~ 49 (245)
..+.|+|.+++.+|+|.|+|.+..- .|...+++.-|.|...
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 4567999999999999999999854 3524788888998754
No 326
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.14 E-value=0.006 Score=37.46 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=37.3
Q ss_pred ecCCCeEEEEEEEeec-CCC--eEEEEECCEEe-ccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 61 TAPDMRAEIICNVYAN-PPA--KVEWFRDGTAI-TLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~~-~~~--~~~w~~~~~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+..++.++|.|.+.|. -++ .+.|.+++... ...........+. .+.|.+..-...+.-.|.|.+....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4568899999999988 333 78999986422 1110100111111 1233333322223457999998764
No 327
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.13 E-value=0.015 Score=35.66 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCc-E-EEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-I-DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~-~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
.++.+.|.|.+.|..+. .+.|++++.. ..+.. . .....+. .+.|.+..-.......|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46678999999986443 7899999987 32211 0 1111111 1234444322222457999998864
No 328
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.11 E-value=0.00071 Score=43.50 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=25.3
Q ss_pred cceEEE----eecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 2 KEIELL----YNRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 2 ~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
+|+++. .+..+|+|.+++.+|+|.|.|.+...
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 466663 33467999999999999999998764
No 329
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.11 E-value=0.005 Score=37.75 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE-EEEecCc----eeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI-DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
.+..++|.|.+.|.-++ .+.|.++|..+..+... .....+. .+.|.+..-. ....|+|.+...
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 45678999999985443 78999999876543211 1111111 1233333221 233599998874
No 330
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.05 E-value=0.0009 Score=42.36 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred cceEEEeccCCCCCEEEEEEEEcC
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
..+|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 71 RSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred ccEEEECCCChhhCEEEEEEeeCC
Confidence 467999999999999999999864
No 331
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.05 E-value=0.0013 Score=40.57 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=25.7
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNI 34 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~ 34 (245)
+|..+.. +..+|+|.+++.+|+|.|.|.+....
T Consensus 51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 4566542 33569999999999999999888653
No 332
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.91 E-value=0.0016 Score=40.30 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=23.6
Q ss_pred ceEEEee--cceEEEeccCCCCCEEEEEEEEcC
Q psy12131 3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
|+....+ ...|+|.+++++|+|.|.|.+.+.
T Consensus 53 rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 53 RFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 4444433 346999999999999999988753
No 333
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.89 E-value=0.018 Score=33.91 Aligned_cols=71 Identities=10% Similarity=-0.074 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131 158 YRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234 (245)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~ 234 (245)
+.|+|...+..|...+. ||++.. ...... ....+..... ...+.+.....++...|.|.|.|..+.+...+
T Consensus 2 ~~L~C~s~~skP~a~i~-W~k~~~~l~~~~~---~~~~~~~~t~--~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~ 73 (80)
T cd05885 2 VELTCLSPRSKPAATLR-WYRDRKELKGVIS---QQENGKTVSV--SNTIRFPVDRKDDGAILSCEASHPALVSQKKQ 73 (80)
T ss_pred EEEEEeCCCccCCCeEE-EEECCEECCCCcc---cccCCceEEE--EEEEEEEeeeccCCcEEEEEEEChhhCCCCee
Confidence 68999996655554554 666654 111110 0011100111 12344444444445555555999999765443
No 334
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.85 E-value=0.024 Score=35.72 Aligned_cols=70 Identities=11% Similarity=0.250 Sum_probs=45.1
Q ss_pred ceEEecCCCeEEEEEEEeecCCC---eEEEEECCE-Ee--------------ccCCcEE--EEecCceeEEEEccCCCCC
Q psy12131 57 QWIHTAPDMRAEIICNVYANPPA---KVEWFRDGT-AI--------------TLGGRID--MHVSSEKHSLLVRHIKDTD 116 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~~-~~--------------~~~~~~~--~~~~~~~~~l~i~~~~~~d 116 (245)
....+..|..+.|.|.+.|.... .+.|+|... .+ ....++. .......-.|++.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 34557788899999999775443 577887211 10 0112222 2223445688999999999
Q ss_pred CeEEEEEEEe
Q psy12131 117 FGNYMCQASN 126 (245)
Q Consensus 117 ~g~y~C~~~n 126 (245)
.+.|.|..+.
T Consensus 86 Ta~Y~Ca~e~ 95 (115)
T cd05721 86 TDIYFCKIEL 95 (115)
T ss_pred CeEEEEEeee
Confidence 9999997753
No 335
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.80 E-value=0.0027 Score=39.86 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.3
Q ss_pred ceEEEeccCCCCCEEEEEEEEcC
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 71 FTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEEEECCCChHHCEEEEEEEeCC
Confidence 45999999999999999998753
No 336
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.80 E-value=0.0022 Score=40.96 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=24.7
Q ss_pred cceEEEee----cceEEEeccCCCCCEEEEEEEEc
Q psy12131 2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASN 32 (245)
Q Consensus 2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~ 32 (245)
+|+.+..+ ...|+|.+++.+|+|.|.|.+..
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 46666543 35699999999999999999874
No 337
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.79 E-value=0.046 Score=33.41 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=50.0
Q ss_pred cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE---ecC
Q psy12131 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK---NRF 227 (245)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~---N~~ 227 (245)
.+..|..|+|.|..... .. ..++|++......|. ..... .......|.|..+.+.+.+.|+|... ...
T Consensus 11 vV~~G~~VTL~C~~~~~--~~-~f~l~k~g~~~~~~~-~~~~~-----~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~ 81 (94)
T cd05711 11 VVPSGENVTLQCHSDIR--FD-RFILYKEGRSKPVLH-LYEKH-----HGGFQASFPLGPVTPAHAGTYRCYGSYNHSLY 81 (94)
T ss_pred ccCCCCeEEEEEecCCC--CC-EEEEEECCCCCCcee-ccccc-----CCeEEEEEEecCCCcccCEEEEEEEECCCCCc
Confidence 35679999999987432 22 345677655222222 11110 01223678999999988888888863 346
Q ss_pred CCCCCCcceEEe
Q psy12131 228 GWSRPSKAYVFA 239 (245)
Q Consensus 228 G~~~~s~~~~~~ 239 (245)
..+.+|+.+++.
T Consensus 82 ~wS~~Sdpl~l~ 93 (94)
T cd05711 82 EWSAPSDPLKIV 93 (94)
T ss_pred cccCCCCCeEEe
Confidence 788999888753
No 338
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.71 E-value=0.0017 Score=41.52 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=25.5
Q ss_pred cceEEEe----ecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
+|+.+.. +..+|.|.+++.+|+|.|.|.+...
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 4666642 3457999999999999999999853
No 339
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.51 E-value=0.0057 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCCEEEEEEEEc
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASN 32 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~ 32 (245)
..|+|.+++.+|+|.|.|...+
T Consensus 72 ~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 72 YRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEEECCCCHHHCEEEEEeEcC
Confidence 4599999999999999999864
No 340
>PHA02633 hypothetical protein; Provisional
Probab=96.48 E-value=0.013 Score=32.04 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=31.7
Q ss_pred eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131 104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142 (245)
Q Consensus 104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~ 142 (245)
...|.|-+...+|.|.|.|...|..-....++.+.+...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 346888888999999999999998877777787776543
No 341
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.40 E-value=0.012 Score=35.04 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=26.9
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
++.+|.+.++...|+|.++|.+.-+.-. ..+.+.+.|
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~-~~~~~~V~V 85 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSSE-KTLKLDIKV 85 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECceE-EEEEeeEEE
Confidence 5567999999999999999999754222 344454444
No 342
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.37 E-value=0.027 Score=31.65 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=34.6
Q ss_pred CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 126 (245)
....+.|.|.. ...|.|++ |..+.... ..++-+.....+..|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 35678999975 24699999 44333211 23577777777788999999877
No 343
>PHA02982 hypothetical protein; Provisional
Probab=96.37 E-value=0.07 Score=37.17 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=51.1
Q ss_pred ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEec-CCCeEEEEEEEeecCCCeE
Q psy12131 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA-PDMRAEIICNVYANPPAKV 81 (245)
Q Consensus 3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~ 81 (245)
++++..+.++|+|.++..+..|.|+|.+....+....-.-=|.|+.--. ..... ......+.|-+-....+-.
T Consensus 92 ~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V------~~~W~e~nNeT~V~CyVgS~~~dvp 165 (251)
T PHA02982 92 ALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDI------LYVVEEHNNETIITCFVGSKHGDVP 165 (251)
T ss_pred EEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceE------EEEEEecCCeEEEEEEEEeccCCCc
Confidence 4566777899999999999999999999986655333233334421111 01111 2334456788866555444
Q ss_pred EEEECCEE
Q psy12131 82 EWFRDGTA 89 (245)
Q Consensus 82 ~w~~~~~~ 89 (245)
.|..+|..
T Consensus 166 ~W~V~GVv 173 (251)
T PHA02982 166 RFIVAGIV 173 (251)
T ss_pred cEEEeeEE
Confidence 89887764
No 344
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.30 E-value=0.0078 Score=35.71 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=25.3
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN 45 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 45 (245)
+.|.|.....+|.|.|+|.|.|..... ..+++.|.
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 458888888889999999999875432 44555543
No 345
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.30 E-value=0.026 Score=34.76 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=37.1
Q ss_pred ecCCCeEEEEEEEeecC-C--CeEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 61 TAPDMRAEIICNVYANP-P--AKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
...+..+.|.|.+.+.- + ..+.|.+++.. ...........+. .+.|.+..-.......|+|.+....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 34678899999999854 2 37999998764 1100001111111 2344444222223346999988754
No 346
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.19 E-value=1.4 Score=43.08 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=106.6
Q ss_pred cCCCCCEEEEEE--EEcCCCCceeeEEEEEEecCCe-EEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC-EEeccC
Q psy12131 18 VTLKLAGLYQCI--ASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG-TAITLG 93 (245)
Q Consensus 18 ~~~~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~-~~~~~~ 93 (245)
.+..++|.|+.. |.|..+. ...+..+.|++++. +........+..|+.+++.+.........+.|...+ ......
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSG-KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCc-ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence 567799999765 4577666 67777888887764 333333445678999999998877777788887643 322211
Q ss_pred CcEEEEecCceeEEEEccCCCCCCeEE--EEEEEeCCceeEEEEEEEecCCCCcc---ccCc-cccCCCeeEEEEEeCCC
Q psy12131 94 GRIDMHVSSEKHSLLVRHIKDTDFGNY--MCQASNNLGSSQQFIQLSGIPNIPVF---QKSS-RRLGPDGYRLVWQVDTY 167 (245)
Q Consensus 94 ~~~~~~~~~~~~~l~i~~~~~~d~g~y--~C~~~n~~g~~~~~~~~~~~~~~p~~---~~~~-~~~~~~~~~l~~~~~~~ 167 (245)
... .+ .+... ..|.| ...+.|..+.....+.+.+...-... .... ....+...++.=.....
T Consensus 1913 ~~~---------t~-~HsY~--~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g 1980 (2740)
T TIGR00864 1913 PGP---------RF-SHSFP--RVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRG 1980 (2740)
T ss_pred CCC---------eE-EeecC--CCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecC
Confidence 110 01 11111 23444 45678888777766665543221111 0001 12334444444344444
Q ss_pred CCceEEEEEEEee--cCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131 168 SGIIQYLLKFRER--EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241 (245)
Q Consensus 168 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~ 241 (245)
.|+ .|.+.+... +....|... ... ..+.. .....|.+.|.|.|.+|.......++++..
T Consensus 1981 ~~V-~f~W~f~~~~~~g~~~~~~~---G~~--------vty~~---~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 1981 KPV-AFAWTFDLHHLHGDSLVIHM---GKD--------VSYTA---EAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred Cce-EEEEEeeecccCCCcceeec---CCc--------eEEcc---CCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 444 344333322 111222111 111 33433 357899999999999998765555555543
No 347
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.13 E-value=0.05 Score=33.28 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=41.4
Q ss_pred ecCCCeEEEEEEEee-cCC--CeEEEEECCEEeccCCcEEE----EecCceeEEEEccCCCCCCe-EEEEEEEeCCc
Q psy12131 61 TAPDMRAEIICNVYA-NPP--AKVEWFRDGTAITLGGRIDM----HVSSEKHSLLVRHIKDTDFG-NYMCQASNNLG 129 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~-~~~--~~~~w~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 129 (245)
...|..+++.|.+.+ .|. ..+.|++....+........ ........+++..- .+|.| .|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 368999999999965 444 47999886655543321110 00112245555553 55655 89999986543
No 348
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.12 E-value=0.0047 Score=38.63 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.4
Q ss_pred ecceEEEeccCCCCCEEEEEEEEc
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASN 32 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~ 32 (245)
+...|+|.+++.+|+|.|.|.+.+
T Consensus 67 ~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 67 NSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CEEEEEECCCCHHHCEEEEEEEcc
Confidence 345699999999999999998763
No 349
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.09 E-value=0.063 Score=32.91 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=40.6
Q ss_pred eEEecCCCeEEE-EEEE-eecCCCeEEEEECCEEec-------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 58 WIHTAPDMRAEI-ICNV-YANPPAKVEWFRDGTAIT-------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 58 ~~~~~~g~~~~l-~C~~-~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
...+.+|+.+.+ .|.+ .|.|.++|.|+.+..... .++.+.+ .+.+.+......+.-.+.|.+....
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 345667888888 7876 567888999997632211 1112222 2355555444445668999998764
No 350
>KOG0196|consensus
Probab=96.04 E-value=0.07 Score=45.01 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=56.1
Q ss_pred ccCCCeeEEEEEeC---CCCCceEEEEEEEeec-CCCCeE----EE-eeCCCCCCCcceeeeEEEecCCCCCceEEEEEE
Q psy12131 152 RLGPDGYRLVWQVD---TYSGIIQYLLKFRERE-ELTPWR----NI-VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVL 222 (245)
Q Consensus 152 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~ 222 (245)
...+.++.|.|.++ +...-..|.+-.+.-. ..+.=. .+ ..+. ..........+.+|.+.++|+|.|.
T Consensus 341 ~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~----q~gLt~~~V~v~~L~ah~~YTFeV~ 416 (996)
T KOG0196|consen 341 NVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPR----QRGLTETSVTVSDLLAHTNYTFEVE 416 (996)
T ss_pred ecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCC----CCCcccceEEEeccccccccEEEEE
Confidence 47888999999983 3345566776666544 110000 01 1111 1223347889999999999999999
Q ss_pred EEecCCCCC----CCcceEEecCCCC
Q psy12131 223 AKNRFGWSR----PSKAYVFATEGAE 244 (245)
Q Consensus 223 a~N~~G~~~----~s~~~~~~t~~~~ 244 (245)
|.|.+..-. ....+.++|..++
T Consensus 417 AvNgVS~lsp~~~~~a~vnItt~qa~ 442 (996)
T KOG0196|consen 417 AVNGVSDLSPFPRQFASVNITTNQAA 442 (996)
T ss_pred EeecccccCCCCCcceeEEeeccccC
Confidence 999986432 3345677765543
No 351
>KOG4802|consensus
Probab=96.04 E-value=0.03 Score=43.06 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=52.5
Q ss_pred CCCccccCccccCCCeeEEEEEeCCCCCce--------EEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCC
Q psy12131 142 NIPVFQKSSRRLGPDGYRLVWQVDTYSGII--------QYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212 (245)
Q Consensus 142 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 212 (245)
.+|.....-.........+.|.......+. +|...+...+ ..-.|.++...... ..+...++.
T Consensus 146 l~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e--------~~~~~t~~r 217 (516)
T KOG4802|consen 146 LPPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEE--------NTYIFTDMR 217 (516)
T ss_pred CCCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeeecCCC--------ceeeeeecC
Confidence 344333333334455677788874432221 1111111111 34567777654443 457778999
Q ss_pred CCceEEEEEEEEecCCC---CCCCcceEEecC
Q psy12131 213 LFTQYEASVLAKNRFGW---SRPSKAYVFATE 241 (245)
Q Consensus 213 ~~~~y~~~v~a~N~~G~---~~~s~~~~~~t~ 241 (245)
|++-|.||+.|+|..|. +++|.....+-.
T Consensus 218 PgRwyefrvaavn~~G~rGFs~PSkpf~ssk~ 249 (516)
T KOG4802|consen 218 PGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKN 249 (516)
T ss_pred cceeEEEEEeeeecccccccCCCCCCCCCCCC
Confidence 99999999999999975 555554444433
No 352
>PHA02982 hypothetical protein; Provisional
Probab=96.02 E-value=0.029 Score=39.00 Aligned_cols=73 Identities=14% Similarity=0.363 Sum_probs=50.7
Q ss_pred EecCCCeEEEEEEEeecCC-CeEEEEECC-EEec----------c--------CCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131 60 HTAPDMRAEIICNVYANPP-AKVEWFRDG-TAIT----------L--------GGRIDMHVSSEKHSLLVRHIKDTDFGN 119 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~~~-~~~~w~~~~-~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~g~ 119 (245)
.+..++.+.|.|....... .+..|+.+. ..+. . ...+.+...+..++|+|+.+..+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 3456899999999533222 367887633 2222 1 123445667788999999999999999
Q ss_pred EEEEEEeCCceeE
Q psy12131 120 YMCQASNNLGSSQ 132 (245)
Q Consensus 120 y~C~~~n~~g~~~ 132 (245)
|+|.+....+..+
T Consensus 115 Ytc~~ks~~~k~E 127 (251)
T PHA02982 115 FTCEAKDAEGKEE 127 (251)
T ss_pred eEEEEecCCCchh
Confidence 9999998665443
No 353
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.79 E-value=0.13 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=47.0
Q ss_pred CCCeeEEEEEe-CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCC--CCceEEEEEEEEecCC
Q psy12131 154 GPDGYRLVWQV-DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ--LFTQYEASVLAKNRFG 228 (245)
Q Consensus 154 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--~~~~y~~~v~a~N~~G 228 (245)
......|+|.+ .+.++...|.++|+.. ....|..+.. ...+....+.++... ....|.+||+|.-.-.
T Consensus 33 ~nf~~iL~W~~~~~~~~~~~ytVq~~~~-~~~~W~~v~~------C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~ 103 (107)
T PF01108_consen 33 VNFKHILRWDPGPGSPPNVTYTVQYKKY-GSSSWKDVPG------CQNITETSCDLTDETSDPSESYYARVRAEVGNQ 103 (107)
T ss_dssp ETTEEEEEEEESTTSSSTEEEEEEEEES-STSCEEEECC------EEEESSSEEECTTCCTTTTSEEEEEEEEEETTE
T ss_pred ECCceEEEeCCCCCCCCCeEEEEEEEec-CCcceeeccc------eecccccceeCcchhhcCcCCEEEEEEEEeCCc
Confidence 35568999999 5556778999999943 4788987621 011122667777643 7889999999976543
No 354
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.60 E-value=0.02 Score=36.68 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.3
Q ss_pred eEEEeccCCCCCEEEEEEEEc
Q psy12131 12 SLDLDRVTLKLAGLYQCIASN 32 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~ 32 (245)
.|+|.+++.+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 699999999999999998764
No 355
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.52 E-value=0.019 Score=37.07 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=44.5
Q ss_pred EecCCCeEEEEEEEeec-----CCCeEEEEECCEEecc--CC--cE--------EE-EecCceeEEEEccCCCCCCeEEE
Q psy12131 60 HTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITL--GG--RI--------DM-HVSSEKHSLLVRHIKDTDFGNYM 121 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~--~~--~~--------~~-~~~~~~~~l~i~~~~~~d~g~y~ 121 (245)
...-.+.+.|+|.+... +...+.|..++..+-. +. .. .+ ....+.++|.+.....- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 34468899999998642 2236999988876531 11 11 01 00122345776664433 79999
Q ss_pred EEEEeCCceeEEEEEEEec
Q psy12131 122 CQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 122 C~~~n~~g~~~~~~~~~~~ 140 (245)
|.+.......+..+.|+..
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999888777777777653
No 356
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=95.27 E-value=0.31 Score=30.13 Aligned_cols=74 Identities=12% Similarity=-0.039 Sum_probs=38.6
Q ss_pred ccCCCeeEEEEEeCCCCCceEE-EEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131 152 RLGPDGYRLVWQVDTYSGIIQY-LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229 (245)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~ 229 (245)
...++.++|+|.+.+..|...- +.||+.... -.-... .......... ...+.+..-..++--.|+|+|.+.++.
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~-l~~~~~-~~~~~~~~~~--~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET-LSRQPF-GDNTKSPVNA--PATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE-ccccee-ccccCCCcee--EEEEEEecchhhCCcEEEEEEEeccCc
Confidence 4678999999999877676554 456666441 000011 1100111111 233444333333333666669999875
No 357
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.08 E-value=0.03 Score=31.28 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=22.9
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNI 34 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 34 (245)
.....|.|.+++..|.|.|.|.+.+..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 344569999999999999999999765
No 358
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.72 E-value=0.38 Score=28.35 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=22.5
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEE
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIAS 31 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 31 (245)
.+.......+........|+|.++|.|.
T Consensus 36 ~k~~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 36 KKSLETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ccccccceEEEEecCCCCCCEEEEEEEc
Confidence 3455566667888999999999999995
No 359
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.71 E-value=0.068 Score=38.72 Aligned_cols=49 Identities=14% Similarity=0.381 Sum_probs=38.3
Q ss_pred CCCeEEEEE-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 77 PPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 77 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
..|.+.|.- ++..+.......+...| .|.+.++..++.|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 357899986 45666666677776554 69999999999999999987644
No 360
>KOG1480|consensus
Probab=94.45 E-value=0.0042 Score=51.28 Aligned_cols=75 Identities=21% Similarity=0.432 Sum_probs=55.5
Q ss_pred eecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131 54 VEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131 (245)
Q Consensus 54 ~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 131 (245)
..+....+..+..+.+.|.. .+.|...+.|++++..+..+........ ..+.+......|.|+|+|++.|..+..
T Consensus 134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred cChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhcccceeeeehhhccc
Confidence 34445567777788888776 6677779999999887776554443332 258888899999999999999976543
No 361
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.36 E-value=0.68 Score=28.43 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=24.9
Q ss_pred CCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEE
Q psy12131 141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177 (245)
Q Consensus 141 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 177 (245)
|.+|.+........|..++|.|.+.+..|...-.+.+
T Consensus 1 p~~p~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~v~L 37 (99)
T cd07689 1 PKDPEILLSGPLEEGKPVTVKCEVPDVYPFDRLEIEL 37 (99)
T ss_pred CCCccCcccCcccCCceEEEEEEecCcccCCceEEEE
Confidence 3455555555568899999999997666664444433
No 362
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.27 E-value=0.075 Score=29.93 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.0
Q ss_pred cceEEEeccCCCCCEEEEEEEEc
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASN 32 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~ 32 (245)
..+|.+.+...+-.|.|.|.+.+
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc
Confidence 45688899999999999998876
No 363
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.13 E-value=0.058 Score=39.05 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=26.0
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
+++.+...|. |.+.+.+.+++|.|+|...-.
T Consensus 29 ~~~nIT~TG~-L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 29 SYVNITETGK-LMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CeEEEccCce-EEeeccccccCCceEEEEEEE
Confidence 3667776665 999999999999999999854
No 364
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=93.98 E-value=0.21 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=27.5
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 48 (245)
++|.|..-..+|...|+|+|.|..-........|.|.+
T Consensus 44 S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 44 SQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 45888777767777999999987644456667777653
No 365
>KOG4802|consensus
Probab=93.77 E-value=0.73 Score=35.88 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=69.3
Q ss_pred eEEEEccCCCCCCeEEEEEEEeCCceeEEEE-----EEEe---cCCCCccccCcc-ccCCC-eeEEEEEe-CCCCCceEE
Q psy12131 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFI-----QLSG---IPNIPVFQKSSR-RLGPD-GYRLVWQV-DTYSGIIQY 173 (245)
Q Consensus 105 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~-----~~~~---~~~~p~~~~~~~-~~~~~-~~~l~~~~-~~~~~~~~~ 173 (245)
.........+..-..|+..|.|..|....+. ...- .|++|....... ...|. ...+.|-+ .++-|+..|
T Consensus 209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Y 288 (516)
T KOG4802|consen 209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKY 288 (516)
T ss_pred ceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCcceee
Confidence 3566677777677777888887766543322 1111 233343333322 22233 34555666 567899999
Q ss_pred EEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131 174 LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP 232 (245)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~ 232 (245)
.|.|.-.-+.. -..|.... ...... ..+.|..|.|+..|.+.+.|..-.|.++.
T Consensus 289 ki~Ws~~v~s~-k~~m~tks--~~~k~t--hq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 289 KITWSLYVNSA-KASMITKS--SYVKDT--HQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred EEEeehhhhhh-hhhccccc--ceeecc--chhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 98875533000 00010000 001111 23458999999999999999999998763
No 366
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.73 E-value=0.89 Score=27.45 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=42.4
Q ss_pred ceEEecCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131 57 QWIHTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 125 (245)
+...+..|.+++..|..... ....+.|..++..++.. .+..... ..+.+++.++.....-.|.|...
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~-~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIND-TVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEEST-TEEEEEESS--SSEEEEEEEEEC
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCC-eEEEEEEccCCCCCceEEEEEEc
Confidence 34457899999999998532 33579999998866654 4444433 34778888877655556666643
No 367
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.53 E-value=8.7 Score=38.21 Aligned_cols=192 Identities=10% Similarity=0.104 Sum_probs=100.5
Q ss_pred eccCCCCCEEEEEE--EEcCCCCceeeEEEEEEecCC-eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE-Eec
Q psy12131 16 DRVTLKLAGLYQCI--ASNNIGESTSKNFIVNVIYPP-EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT-AIT 91 (245)
Q Consensus 16 ~~~~~~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~-~~~ 91 (245)
..+...+.|.|... +.|..|. ..+...+.|.++- .+........+..+..+.+.-.........+.|...+. ...
T Consensus 1662 ~~vt~~~pG~Y~VtL~aSN~vG~-~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864 1662 AKLNPLEAGPCDIFLQAANLLGQ-ATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred eEEecCCCceEEEEEEEeecccc-eeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence 34556788888654 4477777 4666666665532 22222222334568888887666666667899986543 211
Q ss_pred -cCCcEEEEecCceeEEEEccCCCCCCeEEE--EEEEeCCceeEEEEEEEecCCCC--ccccCc-----cccCCCeeEEE
Q psy12131 92 -LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM--CQASNNLGSSQQFIQLSGIPNIP--VFQKSS-----RRLGPDGYRLV 161 (245)
Q Consensus 92 -~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~~~n~~g~~~~~~~~~~~~~~p--~~~~~~-----~~~~~~~~~l~ 161 (245)
....+. . .....|.|. ..+.|..|+...++.+.+..... .+.... -...+.++.+.
T Consensus 1741 ~s~p~~t---------H-----tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~ 1806 (2740)
T TIGR00864 1741 TSEPFMS---------H-----SFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQ 1806 (2740)
T ss_pred cCCCceE---------E-----EccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEE
Confidence 111111 1 122456665 45778888766666555542221 111110 01122333332
Q ss_pred EEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131 162 WQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~ 241 (245)
=.+..+.+ ..|.+.+.+.. ... . ..... -....+.|.+++.|.|.+|....+..+.++..
T Consensus 1807 a~vstGsn-Vsw~W~f~~g~--s~~-------g---------k~v~~-Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~ 1866 (2740)
T TIGR00864 1807 GELATGTN-VSWCWAIDGGS--SKM-------G---------KHACM-TFPDAGTFAIRLNASNAVSGKSASREFFAEEP 1866 (2740)
T ss_pred EEccCCCe-eEEEEEeCCCC--ccc-------c---------ceeEE-ecCCCeEEEEEEEEEcccCcceeeeeEEEEEe
Confidence 22222223 35665443211 010 0 11111 23466789999999999998888777776654
Q ss_pred C
Q psy12131 242 G 242 (245)
Q Consensus 242 ~ 242 (245)
.
T Consensus 1867 I 1867 (2740)
T TIGR00864 1867 I 1867 (2740)
T ss_pred c
Confidence 3
No 368
>PHA03042 CD47-like protein; Provisional
Probab=93.50 E-value=0.78 Score=33.64 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=45.0
Q ss_pred cCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131 62 APDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 136 (245)
.-.+.+.++|..... ....+.|..++..+-..... ..++|.+.. ...-.|+|+|.+.+........+.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccEEEE
Confidence 357789999998642 34479999988765432221 123455443 333479999999986655555555
Q ss_pred EEe
Q psy12131 137 LSG 139 (245)
Q Consensus 137 ~~~ 139 (245)
++.
T Consensus 102 Lk~ 104 (286)
T PHA03042 102 LQY 104 (286)
T ss_pred EEE
Confidence 553
No 369
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=93.24 E-value=0.078 Score=34.29 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=24.3
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.+.++|.|...+.- .|+|+|++...... ....+.|..
T Consensus 83 kG~aSL~~~~~~a~-~GnYTCeVt~~~~e-ge~~i~Lk~ 119 (130)
T PF08204_consen 83 KGNASLKMDKSDAV-EGNYTCEVTELSRE-GETTIELKY 119 (130)
T ss_dssp GTB--EEEEHHHHH--EEEEEEEEETTEE-EEEEEEEEE
T ss_pred CCCEEEEEcchhcc-ccceEEEEEecCCC-ceEEEEEEE
Confidence 34566888876655 99999999976654 455666655
No 370
>KOG4597|consensus
Probab=93.05 E-value=0.17 Score=39.95 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=57.1
Q ss_pred EecCCCeEEEEEEEeecCCCeEEEEE---CCEEeccCCcEEE--EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131 60 HTAPDMRAEIICNVYANPPAKVEWFR---DGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~~~~~~~w~~---~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 134 (245)
.+-.++...++|...|.+.+.|.|.+ +.+.+.......+ ........|.|-+-+..|+|-|+|.+.+..|.....
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rd 286 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRD 286 (560)
T ss_pred hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecc
Confidence 34567888999999999999999976 3332221111111 111134578899999999999999999999988887
Q ss_pred EEEEec
Q psy12131 135 IQLSGI 140 (245)
Q Consensus 135 ~~~~~~ 140 (245)
+.+.+.
T Consensus 287 v~c~s~ 292 (560)
T KOG4597|consen 287 VPCSSV 292 (560)
T ss_pred ceeeee
Confidence 776653
No 371
>KOG0613|consensus
Probab=92.06 E-value=1.6 Score=39.14 Aligned_cols=124 Identities=9% Similarity=-0.003 Sum_probs=78.3
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec----------------CCeEEe---ecceEEecCCCeEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----------------PPEVSV---EKQWIHTAPDMRAEI 69 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----------------~p~~~~---~~~~~~~~~g~~~~l 69 (245)
++.++.|.+....+.+.|+|...+..+.. ...+...+.. +|.+.. ....+....+..+.+
T Consensus 276 ~~~t~~i~~~~~~~~~s~t~~~~~~~~q~-~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m 354 (1205)
T KOG0613|consen 276 GGNTKTIQNDGPEPELSWTVADKRQGCQD-RFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEM 354 (1205)
T ss_pred CCccccccccCCccccceeeecccCCccc-ceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceee
Confidence 45568888889999999999998876653 2222222210 111111 112233445677889
Q ss_pred EEEEeecCCCe-EEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131 70 ICNVYANPPAK-VEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 70 ~C~~~~~~~~~-~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 133 (245)
.|...+.+.|. +.|+++........ .+..........+.+..+...+.+.+.|.+.|..|....
T Consensus 355 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 355 PTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred cccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 99998888875 99998765444332 111222223346778888888899999999999886544
No 372
>PHA03286 envelope glycoprotein E; Provisional
Probab=92.06 E-value=4 Score=32.48 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=51.3
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec-----CCeEE--eec------------ceEEecCCCeEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-----PPEVS--VEK------------QWIHTAPDMRAEI 69 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--~~~------------~~~~~~~g~~~~l 69 (245)
.++.|+|.+++.+++|.|+-...|+.|......+.|.|.. +|.+. ..| .......|+++.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 3466999999999999999999988777667778888852 12221 111 2233457888876
Q ss_pred EEEEee--c---CCCeEEEEE
Q psy12131 70 ICNVYA--N---PPAKVEWFR 85 (245)
Q Consensus 70 ~C~~~~--~---~~~~~~w~~ 85 (245)
.-.... . -...+.|+.
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEeecccCCCceEEEEEEE
Confidence 655541 1 123788975
No 373
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=91.96 E-value=1.6 Score=26.44 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=10.7
Q ss_pred CCeeEEEEEeCCC
Q psy12131 155 PDGYRLVWQVDTY 167 (245)
Q Consensus 155 ~~~~~l~~~~~~~ 167 (245)
++.+.|.|.+.+.
T Consensus 14 ~~~~~L~C~a~gF 26 (93)
T cd07698 14 DGSLTLSCHATGF 26 (93)
T ss_pred CCcEEEEEEEEEE
Confidence 5689999999664
No 374
>KOG0613|consensus
Probab=91.83 E-value=1.3 Score=39.73 Aligned_cols=164 Identities=9% Similarity=-0.074 Sum_probs=89.7
Q ss_pred ecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 140 (245)
Q Consensus 61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~ 140 (245)
...+....+.|.......+.+.|+.+....... .....+..+.+....+.+.|+|...+..+.....+.....
T Consensus 241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~ 313 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAP 313 (1205)
T ss_pred ccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEee
Confidence 345666777777777666766666544322211 0122355666666777788888888877766554443321
Q ss_pred -----CCCCc----------cc------cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec---CCCCeEEEeeCCCCC
Q psy12131 141 -----PNIPV----------FQ------KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE---ELTPWRNIVIPSDGS 196 (245)
Q Consensus 141 -----~~~p~----------~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 196 (245)
+.|.. .. .......+.-+++.|...+..+.-.+. ++.... ....|..... .
T Consensus 314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~--~-- 388 (1205)
T KOG0613|consen 314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQ-GYHGEEVSSESLGALPCPV--G-- 388 (1205)
T ss_pred ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchhe-eeccccccccccccccccc--c--
Confidence 11111 00 001223445677777765543222111 222221 1222321111 1
Q ss_pred CCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131 197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA 239 (245)
Q Consensus 197 ~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~ 239 (245)
......+.+.++.++..|..+|.|.|..|.....+...++
T Consensus 389 ---~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs 428 (1205)
T KOG0613|consen 389 ---TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS 428 (1205)
T ss_pred ---cccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence 1122567788899999999999999999988777654443
No 375
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.67 E-value=3.8 Score=33.23 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=33.1
Q ss_pred eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48 (245)
Q Consensus 8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 48 (245)
.+.+.|+|.+++.+++|.|+-...+..+ .....+.|+|+.
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 3456699999999999999999998766 467778888876
No 376
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.62 E-value=1.8 Score=25.57 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=29.3
Q ss_pred CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEE-EeCCceeEEEEEE
Q psy12131 79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNNLGSSQQFIQL 137 (245)
Q Consensus 79 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~n~~g~~~~~~~~ 137 (245)
+.+.|...+....... ....+......|.|.+.|.| .+........+.+
T Consensus 27 ~~~~l~~~~~k~~~~~----------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i 76 (80)
T PF05790_consen 27 PSLFLENPGKKSLETK----------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEI 76 (80)
T ss_dssp EEEEEECSSCEEEEES----------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred hhheeeccCccccccc----------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence 4677766554433222 13455566678999999999 6655444444443
No 377
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.37 E-value=1.7 Score=33.29 Aligned_cols=35 Identities=20% Similarity=0.558 Sum_probs=23.3
Q ss_pred cCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEEC
Q psy12131 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRD 86 (245)
Q Consensus 48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~ 86 (245)
++|.+.+... ...+ .+.|.|.+.|.-+. .+.|.++
T Consensus 202 vpP~V~Vt~k---~~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 202 VTPTVKVTGE---ELGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCceEEecc---cCCC-CceEEEEEEeEeCCccEEEEEec
Confidence 4566555432 1123 57999999996554 7889998
No 378
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.32 E-value=1.6 Score=24.39 Aligned_cols=52 Identities=23% Similarity=0.209 Sum_probs=30.1
Q ss_pred EEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC-cceEE
Q psy12131 176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS-KAYVF 238 (245)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s-~~~~~ 238 (245)
.|+..+..+.|....... ..+...+| +.+.|+|+|.|.|..|..... ..+.+
T Consensus 11 ~Y~l~g~d~~W~~~~~~~----------~~~~~~~L-~~G~Y~l~V~a~~~~~~~~~~~~~l~i 63 (66)
T PF07495_consen 11 RYRLEGFDDEWITLGSYS----------NSISYTNL-PPGKYTLEVRAKDNNGKWSSDEKSLTI 63 (66)
T ss_dssp EEEEETTESSEEEESSTS-----------EEEEES---SEEEEEEEEEEETTS-B-SS-EEEEE
T ss_pred EEEEECCCCeEEECCCCc----------EEEEEEeC-CCEEEEEEEEEECCCCCcCcccEEEEE
Confidence 343333457787653221 16777777 555999999999999876554 34443
No 379
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.16 E-value=1.6 Score=33.98 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=46.5
Q ss_pred ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec--CCCeEEEEEC
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN--PPAKVEWFRD 86 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~ 86 (245)
..++|+|.++..+.+|-|+|+|...... ....-=|.|...-.+... ........+.|-+... .++.+.|..+
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~-~ec~~Cl~V~d~V~f~W~-----~e~~n~T~V~Cyv~sy~~kp~si~wkvn 417 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFK-EECRHCFKVADHVFFKWN-----TEGDNETKVACYAAQYDMQPFSILWKSN 417 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcch-hhhhhheEeccEEEEEEE-----eccCceEEEEEEEEecccCCceeEEEEc
Confidence 3578999999999999999999975332 222222333221111100 1112334567887554 4457999998
Q ss_pred CEEec
Q psy12131 87 GTAIT 91 (245)
Q Consensus 87 ~~~~~ 91 (245)
|....
T Consensus 418 GV~~~ 422 (500)
T PHA02914 418 GVSFG 422 (500)
T ss_pred cEEec
Confidence 87654
No 380
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=91.06 E-value=2.1 Score=25.39 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=13.7
Q ss_pred eEEEEEeCCCCCceEEEEEEEeec
Q psy12131 158 YRLVWQVDTYSGIIQYLLKFRERE 181 (245)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~ 181 (245)
+.|+|.+.+..|. .-..|+++..
T Consensus 2 ~~LtC~a~gf~P~-~~itW~kng~ 24 (83)
T cd05884 2 MQLTCKTSGSKPA-ADIRWFKNDK 24 (83)
T ss_pred EEEEEEeCCccCC-CEEEEEECCE
Confidence 5789999654444 3344565544
No 381
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=90.82 E-value=2.4 Score=26.28 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=34.2
Q ss_pred eEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC--CCCCCCcceEEec
Q psy12131 171 IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF--GWSRPSKAYVFAT 240 (245)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~--G~~~~s~~~~~~t 240 (245)
..|.+.+.... ...-..... ... ..+.+.+|.+++.|=++|.|.... -.|.+|...-++|
T Consensus 44 ~~Y~v~~~~~~-~~~~~~~~~-~~~--------~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 44 LSYNVSYWKNG-SNEKKKEIE-TKN--------SSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp -EEEEEEEETT-TSCEEEEEE-SSS--------EEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred eEEEEEEEeCC-CccceEEEe-ecC--------CEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 56888877755 221112222 221 567899999999999999993332 2466666655554
No 382
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=90.41 E-value=3.1 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=23.2
Q ss_pred ecCCCCccccCc-cccCCCeeEEEEEeCCCCCceEEEEEEEeec
Q psy12131 139 GIPNIPVFQKSS-RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE 181 (245)
Q Consensus 139 ~~~~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (245)
..|..|.+.... ....++.++|.|.+.+..|......|+++..
T Consensus 4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~ 47 (111)
T cd05772 4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGN 47 (111)
T ss_pred cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCE
Confidence 445555444332 2345677899999966444322333555443
No 383
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=90.10 E-value=0.24 Score=31.35 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=19.3
Q ss_pred ecceEEEeccCCCCCEEEEEEEE
Q psy12131 9 NRESLDLDRVTLKLAGLYQCIAS 31 (245)
Q Consensus 9 ~~~~L~i~~~~~~d~G~Y~C~~~ 31 (245)
+..+|+|.+++.+|++.|.|...
T Consensus 72 ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 72 EQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CEEEEEEcCCCHHHCeEEEEEee
Confidence 34559999999999999999653
No 384
>KOG1480|consensus
Probab=88.75 E-value=0.34 Score=40.80 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=28.9
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
...|.|..+...|+|+|+|+|.|-.+...+..+.+.|.
T Consensus 182 d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 182 DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred cCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 34599999999999999999999876644444444443
No 385
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=88.34 E-value=3.6 Score=24.20 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=13.3
Q ss_pred eEEEEEeCCCCCceEEEEEEEeec
Q psy12131 158 YRLVWQVDTYSGIIQYLLKFRERE 181 (245)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~ 181 (245)
+.|.|.+.+..|.. -..|+++..
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~ 24 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDK 24 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCE
Confidence 67999995543433 334555543
No 386
>KOG4258|consensus
Probab=87.90 E-value=3.7 Score=35.55 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=61.1
Q ss_pred cccCCCeeEEEEEeCC---CCCceEEEEEEEeec-------------CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131 151 RRLGPDGYRLVWQVDT---YSGIIQYLLKFRERE-------------ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214 (245)
Q Consensus 151 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 214 (245)
...+.+++.|+|..-. ....++|.+.|+.+- ....|....+...+-...+.....+.+.+|+|+
T Consensus 497 ~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~ 576 (1025)
T KOG4258|consen 497 TVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPW 576 (1025)
T ss_pred EEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCcc
Confidence 3466789999999822 234788998887653 345676665554421112233346889999999
Q ss_pred ceEEEEEEEEe--cCCCC--CCCcceEEecCCCC
Q psy12131 215 TQYEASVLAKN--RFGWS--RPSKAYVFATEGAE 244 (245)
Q Consensus 215 ~~y~~~v~a~N--~~G~~--~~s~~~~~~t~~~~ 244 (245)
+.|-+.|.+.. ..+.. ..|...-++|.+..
T Consensus 577 TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~ 610 (1025)
T KOG4258|consen 577 TQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDI 610 (1025)
T ss_pred ceeEEEEeeeehhhhccccccccceEEEEecCCC
Confidence 99999988862 22222 35677888887653
No 387
>PHA03281 envelope glycoprotein E; Provisional
Probab=87.47 E-value=15 Score=30.27 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=48.8
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC-------eEEeec----------ceEEecCCCeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP-------EVSVEK----------QWIHTAPDMRAEIICN 72 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------~~~~~~----------~~~~~~~g~~~~l~C~ 72 (245)
.+.|+|.+++.+++|.|+-......|......+.|.|+..+ .+...+ .......|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 45699999999999999998887767655567778887532 111111 1223456777766555
Q ss_pred Eeec--CC---CeEEEEE
Q psy12131 73 VYAN--PP---AKVEWFR 85 (245)
Q Consensus 73 ~~~~--~~---~~~~w~~ 85 (245)
.... .. ..+.|+.
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 4432 22 3788975
No 388
>PHA03052 Hypothetical protein; Provisional
Probab=87.21 E-value=2.3 Score=23.88 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.1
Q ss_pred ceEEecCCCeEEEEEEEeec---CCCeEEEEECCEEecc
Q psy12131 57 QWIHTAPDMRAEIICNVYAN---PPAKVEWFRDGTAITL 92 (245)
Q Consensus 57 ~~~~~~~g~~~~l~C~~~~~---~~~~~~w~~~~~~~~~ 92 (245)
..+.+..|.+++|.|.+.-. ..+.+.|..|+..+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 45677899999999998532 2357899988877743
No 389
>COG5475 Uncharacterized small protein [Function unknown]
Probab=87.15 E-value=2.3 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=26.4
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE 36 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 36 (245)
..+++..++...+++..+.+ |.|.|.-.+..|.
T Consensus 9 dvV~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~ 41 (60)
T COG5475 9 DVVTLKSGGPRMTVSGYSSD--GMYECRWFDGYGV 41 (60)
T ss_pred cEEEeecCCceEEEeccccC--CeEEEEEecCCCc
Confidence 45677778888888887755 9999999998775
No 390
>PHA03282 envelope glycoprotein E; Provisional
Probab=87.08 E-value=2.4 Score=33.84 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=31.1
Q ss_pred cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe
Q psy12131 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI 47 (245)
Q Consensus 2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 47 (245)
.|+.+.+ .+|.|.+++.+|+|.|+-.+....... ..+.+.|+|.
T Consensus 117 ~rvs~~n--~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 117 PRVAVVN--GTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceeEec--ceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 5777773 349999999999999999876433221 3455666664
No 391
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=86.01 E-value=1.2 Score=35.84 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=11.7
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE--------Ee------------ecceEEecCCCeEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV--------SV------------EKQWIHTAPDMRAEI 69 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~--------~~------------~~~~~~~~~g~~~~l 69 (245)
.+.|.|.+++.+|+|.|+-...+..+......+.|.|..+... .. ....+....|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 3459999999999999999998776665555677777642111 01 112334567888777
Q ss_pred EEEEee--cC-C---CeEEEEE
Q psy12131 70 ICNVYA--NP-P---AKVEWFR 85 (245)
Q Consensus 70 ~C~~~~--~~-~---~~~~w~~ 85 (245)
.-.... .. . ..+.|+.
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEE
Confidence 655432 22 2 2788975
No 392
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=85.74 E-value=3.8 Score=24.65 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=11.6
Q ss_pred CCCeeEEEEEeCCC
Q psy12131 154 GPDGYRLVWQVDTY 167 (245)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (245)
.+..+.|.|.+.+.
T Consensus 12 ~~~~~~L~C~a~g~ 25 (95)
T cd00098 12 LGGSVTLTCLATGF 25 (95)
T ss_pred cCCCeEEEEEEeeE
Confidence 57799999999665
No 393
>PLN02533 probable purple acid phosphatase
Probab=85.55 E-value=11 Score=30.42 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=27.0
Q ss_pred eeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131 203 TQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243 (245)
Q Consensus 203 ~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~ 243 (245)
.....|.+|++++.|.|+|- ....|....|+|.+.
T Consensus 102 iH~v~l~~L~p~T~Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 102 INDVVIGPLKPNTVYYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred EEEEEeCCCCCCCEEEEEEC------CCCCccceEEECCCC
Confidence 45678999999999999973 223467788888764
No 394
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=84.64 E-value=6.2 Score=23.31 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=13.9
Q ss_pred eEEEEEeCCCCCceEEEEEEEeec
Q psy12131 158 YRLVWQVDTYSGIIQYLLKFRERE 181 (245)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~ 181 (245)
+.|+|.+.+..|.. -+.|+++..
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~ 24 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQ 24 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCE
Confidence 57999996654443 445665543
No 395
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=84.12 E-value=3.1 Score=32.51 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=28.9
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEE
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 53 (245)
++.+.|++.+|.|.|+|.+...... +-...+.|...|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~E--tyrH~I~vrVmPKId 121 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDNE--SHKHEILVRKAPKID 121 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCce--eEEEEEEEEEcccee
Confidence 4788899999999999999975433 444445555566654
No 396
>KOG4258|consensus
Probab=84.11 E-value=3.7 Score=35.57 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131 154 GPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231 (245)
Q Consensus 154 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~ 231 (245)
+.+.+.|.|.. ..++-+..|.+.|+....+....-+.... ........+..|. .+.|.++|+|..-.|.|.
T Consensus 841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~------~~k~~gv~l~~l~-~G~y~~~vratSlaGng~ 913 (1025)
T KOG4258|consen 841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMD------YAKAGGVYLKRLN-PGNYSVRVRATSLAGNGS 913 (1025)
T ss_pred CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhh------hhhcCceEEEecC-CCcEEEEEEEEeeccCCC
Confidence 56788999997 56778899999999765222111010000 0011334555564 458999999999999999
Q ss_pred CCcceEE
Q psy12131 232 PSKAYVF 238 (245)
Q Consensus 232 ~s~~~~~ 238 (245)
+...+.+
T Consensus 914 ~t~~~~~ 920 (1025)
T KOG4258|consen 914 WTESVIF 920 (1025)
T ss_pred CcCCcce
Confidence 8876443
No 397
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=83.66 E-value=6 Score=24.12 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=11.0
Q ss_pred CCCeeEEEEEeCCCCC
Q psy12131 154 GPDGYRLVWQVDTYSG 169 (245)
Q Consensus 154 ~~~~~~l~~~~~~~~~ 169 (245)
..+.+.|.|.+.+..|
T Consensus 13 ~~~~~~L~C~a~gFyP 28 (94)
T cd05847 13 TSETIQLLCLISGYTP 28 (94)
T ss_pred CCCCEEEEEEEEeEEC
Confidence 3456889999965433
No 398
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=83.10 E-value=7.8 Score=23.24 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=35.5
Q ss_pred eEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133 (245)
Q Consensus 66 ~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 133 (245)
...|.+.+.+. ...+.|+.|+..+...... ..+.+ .....|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45566666665 4599999999988433221 11222 224568999988887776544
No 399
>KOG4152|consensus
Probab=82.82 E-value=1.4 Score=35.55 Aligned_cols=34 Identities=26% Similarity=0.066 Sum_probs=30.0
Q ss_pred ecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131 208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241 (245)
Q Consensus 208 i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~ 241 (245)
-..|.++..|+|||.|.|..|.+.+|..+.+.|-
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc 684 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC 684 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeec
Confidence 3467899999999999999999999998888764
No 400
>PHA03269 envelope glycoprotein C; Provisional
Probab=82.16 E-value=26 Score=28.57 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=50.5
Q ss_pred eEEEEccCCCCCCeEEEEEEEeCC---ceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeC-CCCCceEEEEEEEee
Q psy12131 105 HSLLVRHIKDTDFGNYMCQASNNL---GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD-TYSGIIQYLLKFRER 180 (245)
Q Consensus 105 ~~l~i~~~~~~d~g~y~C~~~n~~---g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 180 (245)
..|.|.++...+.|.|.-...+.. ......+.|...-.|-..+....++.|+...-.|.+. -++|-..+..|+++.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng 368 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNF 368 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 468999999999999987755322 2233445554443343444445578899999999994 445555666677774
Q ss_pred c
Q psy12131 181 E 181 (245)
Q Consensus 181 ~ 181 (245)
.
T Consensus 369 ~ 369 (566)
T PHA03269 369 G 369 (566)
T ss_pred c
Confidence 4
No 401
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=81.28 E-value=5.4 Score=24.62 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=15.0
Q ss_pred CCCeeEEEEEeCCCCCceEEEEEEEee
Q psy12131 154 GPDGYRLVWQVDTYSGIIQYLLKFRER 180 (245)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (245)
.++.+.|.|.+.+..|..-...|+++.
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g 42 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDG 42 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECC
Confidence 456789999995543322223344443
No 402
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=81.04 E-value=8.3 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=11.0
Q ss_pred eEEEEEeCCCCCceEEEEEEEe
Q psy12131 158 YRLVWQVDTYSGIIQYLLKFRE 179 (245)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~ 179 (245)
++|.|.+.+.-|..-...|+++
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~ 23 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRN 23 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEEC
Confidence 5678888554332223334444
No 403
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=79.71 E-value=11 Score=22.89 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=16.4
Q ss_pred CCCeeEEEEEeCCCCCceEEEEEEEeec
Q psy12131 154 GPDGYRLVWQVDTYSGIIQYLLKFRERE 181 (245)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (245)
.+....|.|.+.+.-|..-...|+++..
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~ 40 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQ 40 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCe
Confidence 4577899999966433322333555543
No 404
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=79.41 E-value=10 Score=22.23 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.0
Q ss_pred CCeeEEEEEeCCCCC
Q psy12131 155 PDGYRLVWQVDTYSG 169 (245)
Q Consensus 155 ~~~~~l~~~~~~~~~ 169 (245)
+..+.|.|.+.+..|
T Consensus 8 ~~~~~L~C~v~~f~P 22 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYP 22 (83)
T ss_dssp TSEEEEEEEEEEEBS
T ss_pred CCCEEEEEEEEEEEC
Confidence 778899999955433
No 405
>PHA03273 envelope glycoprotein C; Provisional
Probab=79.34 E-value=22 Score=28.66 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred eEEEEccCCCCCCeEEEEEEEeCCceeE--EEEEEEecCCCCccccCccccCCCeeEEEEEeC-CCCCceEEEEEEEeec
Q psy12131 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD-TYSGIIQYLLKFRERE 181 (245)
Q Consensus 105 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 181 (245)
..|.|..+...++|.|.-...+..+... ..+.+...-.|-..+.....+.|+...-.|.+. -++|-.....|+++..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~ 277 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAK 277 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence 3588999999999999877655444333 333332222233333444568889999999984 3455555666777655
No 406
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=79.28 E-value=7.7 Score=20.75 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=21.7
Q ss_pred EEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131 206 YNITGLQLFTQYEASVLAKNRFGWSRPSK 234 (245)
Q Consensus 206 ~~i~~l~~~~~y~~~v~a~N~~G~~~~s~ 234 (245)
+.+..+ ....|.+.+.|.+..|......
T Consensus 16 ~t~~~~-~dG~y~itv~a~D~AGN~s~~~ 43 (54)
T PF13754_consen 16 FTVPAL-ADGTYTITVTATDAAGNTSTSS 43 (54)
T ss_pred EeCCCC-CCccEEEEEEEEeCCCCCCCcc
Confidence 445555 6889999999999999866553
No 407
>PHA03042 CD47-like protein; Provisional
Probab=76.88 E-value=5.4 Score=29.52 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=19.9
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 45 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 45 (245)
++|.+.... .-.|+|+|+|.+.... ....+.|+
T Consensus 71 aSL~~~f~~-~l~GNYTCEv~~l~n~-gk~~IeLk 103 (286)
T PHA03042 71 SSLKFNFSK-NLSGNYTCEAINKFNK-IKNTIELQ 103 (286)
T ss_pred eEEEEeccc-cCCCceeEEEeecccC-ccEEEEEE
Confidence 346554433 4589999999976544 23444443
No 408
>PHA03282 envelope glycoprotein E; Provisional
Probab=76.48 E-value=2.7 Score=33.54 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.5
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
+....++-.|.|.|+..+++|.|.|.+.-+
T Consensus 326 L~~~~n~VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 326 LGWYGHTVNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred ccccCCccceEecCCCcccCceEEEEEEEC
Confidence 556667778999999999999999999854
No 409
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=74.87 E-value=6.3 Score=24.11 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=20.8
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEE
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVN 45 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~ 45 (245)
.|.+.....+|.-.|+|++.+..-. .....+.|.
T Consensus 60 ~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 60 EYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 4666555555666999999986533 134444443
No 410
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=74.30 E-value=19 Score=22.61 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=27.3
Q ss_pred ceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEe
Q psy12131 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSG 139 (245)
Q Consensus 103 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~ 139 (245)
.+.+|.|+.++..|.|.|...+.+..|.... .+.+.+
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4458999999999999999999998887543 444443
No 411
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=74.29 E-value=16 Score=21.67 Aligned_cols=24 Identities=8% Similarity=-0.146 Sum_probs=14.0
Q ss_pred EEEecCCCCCceEEEEEEEEecCC
Q psy12131 205 SYNITGLQLFTQYEASVLAKNRFG 228 (245)
Q Consensus 205 ~~~i~~l~~~~~y~~~v~a~N~~G 228 (245)
.+.+..-.....-.|+|.|.|..-
T Consensus 62 ~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 62 TLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp EEEEETTGGGTTEEEEEEEEETTC
T ss_pred EEEEEcChHHCCeEEEEEEECCcc
Confidence 344443334455667777988753
No 412
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=71.80 E-value=12 Score=22.84 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=16.8
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCC
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIG 35 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~ 35 (245)
.|.+.....+|.-.|+|++.+...
T Consensus 60 ~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 60 EYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCccc
Confidence 466655555566699999998753
No 413
>PHA02935 Hypothetical protein; Provisional
Probab=71.69 E-value=12 Score=26.32 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=37.4
Q ss_pred EEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecce--EEecCCCeEEEEEEEee
Q psy12131 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW--IHTAPDMRAEIICNVYA 75 (245)
Q Consensus 13 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~ 75 (245)
|.|+.++.+|+|.|.-......|.....++.+.|+.. +...... .....--.+.+.|....
T Consensus 104 lnisslryedsgsykgvshlkdgvivtttmnisvkan--iidltgrvryltrnycevkirceiks 166 (349)
T PHA02935 104 LNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKAN--IIDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred eeccceeeccCCcccCchhhcCceEEEEEEEEEEEee--eEeccceeeeeccccEEEEEEEEEee
Confidence 7889999999999988777666765666666666532 2111111 11122335677787653
No 414
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=71.17 E-value=21 Score=21.84 Aligned_cols=15 Identities=20% Similarity=0.168 Sum_probs=11.4
Q ss_pred cCCCeeEEEEEeCCC
Q psy12131 153 LGPDGYRLVWQVDTY 167 (245)
Q Consensus 153 ~~~~~~~l~~~~~~~ 167 (245)
..++.+.|.|.+.+-
T Consensus 12 ~~~~~~tLtC~v~gf 26 (96)
T cd07696 12 LLTKSVKLTCLVTNL 26 (96)
T ss_pred ccCCCeEEEEEEeCC
Confidence 346788999999555
No 415
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=70.53 E-value=22 Score=21.80 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=31.8
Q ss_pred EEEEEEE-eecCCCeEEEEEC--CEE-e----ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131 67 AEIICNV-YANPPAKVEWFRD--GTA-I----TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128 (245)
Q Consensus 67 ~~l~C~~-~~~~~~~~~w~~~--~~~-~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 128 (245)
+.-.|.+ .|.|+.+|.|.-+ |.. . ..+..+.+ .+.+.+-.....+.-...|.+....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEecc
Confidence 4457984 7888899999852 321 0 01111211 2344444445556667888887753
No 416
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=69.66 E-value=71 Score=28.65 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=48.8
Q ss_pred ccCCCeeEEEEEeCCC----CCceEEEEEEEeec--CCCCeEEEe-eCCC---CCCCcceeeeEEEecCCC--CCceEEE
Q psy12131 152 RLGPDGYRLVWQVDTY----SGIIQYLLKFRERE--ELTPWRNIV-IPSD---GSLAGPIYTQSYNITGLQ--LFTQYEA 219 (245)
Q Consensus 152 ~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~-~~~~---~~~~~~~~~~~~~i~~l~--~~~~y~~ 219 (245)
...++.+.|+|+++++ +.+..|.|.+...- ..+++.... +... ...........|...... .++.|.|
T Consensus 765 ~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~~~~~~~ 844 (863)
T TIGR00868 765 GFQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIENGTDLFI 844 (863)
T ss_pred eecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccCCeEEEE
Confidence 4667789999999554 56778888775532 111121111 0000 111233344566655543 5678999
Q ss_pred EEEEEecCCC-CCCCcc
Q psy12131 220 SVLAKNRFGW-SRPSKA 235 (245)
Q Consensus 220 ~v~a~N~~G~-~~~s~~ 235 (245)
-++|.+..|. |..|+.
T Consensus 845 ai~a~d~~~~~s~~sn~ 861 (863)
T TIGR00868 845 AVQAIDKANLTSEVSNI 861 (863)
T ss_pred EEEEEcccccccccccc
Confidence 9999999974 555543
No 417
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=69.43 E-value=23 Score=21.57 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=9.9
Q ss_pred CCCCceEEEEEEE
Q psy12131 211 LQLFTQYEASVLA 223 (245)
Q Consensus 211 l~~~~~y~~~v~a 223 (245)
...++.|.|+|.-
T Consensus 69 ~~~~~~ysC~V~H 81 (93)
T cd05770 69 PTKGDEYACRVRH 81 (93)
T ss_pred CCCCCeEEEEEEE
Confidence 4678888888765
No 418
>PHA03286 envelope glycoprotein E; Provisional
Probab=69.26 E-value=7.2 Score=31.13 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.6
Q ss_pred ceEEEeccCCCCCEEEEEEEEcC
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
.+|.|.|+..+|+|.|.|.+.-+
T Consensus 307 ~nL~f~nA~~s~SGLYVfVl~yN 329 (492)
T PHA03286 307 PSFRLANAQPTDAGLYVVVALYN 329 (492)
T ss_pred CceeecCCCcccCceEEEEEEEC
Confidence 36999999999999999999854
No 419
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=69.11 E-value=4.7 Score=32.55 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
+++..++..|+|.|+..+++|.|.|.+.-+
T Consensus 262 ~~~~~~~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 262 LRWASNGVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp EEE-TTSSSEEESS--GGG-EEEEEEEEET
T ss_pred ccccCCCcceEecCCCcccCceEEEEEEEC
Confidence 556667777999999999999999999854
No 420
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=68.88 E-value=50 Score=25.28 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=32.9
Q ss_pred eEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131 204 QSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242 (245)
Q Consensus 204 ~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~ 242 (245)
...+|.+|+|+..|.+.|.|.-..|.+-+-..+.|.|..
T Consensus 260 ~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr~ 298 (300)
T PF10179_consen 260 TTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTRR 298 (300)
T ss_pred ceeecccCCCCcEEEEEEEEecCCCceeecceEEEEecC
Confidence 456899999999999999999888888777778887753
No 421
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=67.11 E-value=28 Score=21.75 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=49.3
Q ss_pred CCCccccCccccCCCeeEEEEEeCCCCC-ceEEEEEEEeecCCCCeEEEeeCCCC-CCCcceeeeEEEec--CCCCCceE
Q psy12131 142 NIPVFQKSSRRLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDG-SLAGPIYTQSYNIT--GLQLFTQY 217 (245)
Q Consensus 142 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~--~l~~~~~y 217 (245)
..|.+...- ......++..|.+..... ...|.+.|.... ..|..+..-... ..+.-. ..+.+. +..-...|
T Consensus 9 ~~P~~~~C~-S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~--~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 9 EKPENLKCF-SREMETFTCFWEPGSEGNLPTNYTLFYKKEG--EEWKECPDYSTSGPNSTVR--HICYFPKSDTSLFVPY 83 (104)
T ss_dssp CCCEEEEEE-BSSSS-EEEEEEEESSSTSTCEEEEEEEETT--SEEEEESESSTTETTEEEE--EEEEE-CCGCSSSSEE
T ss_pred CCCccCccC-CCCCCcEEEEeeCCCCCCCCCcEEEEEEeCC--CCCccCCCeEecCCCCcee--EEEEcCCCCeEEEEEE
Confidence 334444332 245568899999943322 234888888853 667776543221 111111 224444 77889999
Q ss_pred EEEEEEEecCCCC
Q psy12131 218 EASVLAKNRFGWS 230 (245)
Q Consensus 218 ~~~v~a~N~~G~~ 230 (245)
.++|.|.|..|..
T Consensus 84 ~i~V~a~~~~~~~ 96 (104)
T PF09067_consen 84 CIQVEATNALGSI 96 (104)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEeccCCCcE
Confidence 9999999998753
No 422
>KOG4228|consensus
Probab=67.04 E-value=17 Score=32.71 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=65.9
Q ss_pred EEEEEEEeCCceeEEEEEEEecCCCCccccCc-cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCC
Q psy12131 119 NYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS-RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197 (245)
Q Consensus 119 ~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (245)
.|.|.+....+-......+.+...||...... .......+.+.|..... +...|.+.++-.. .+ ..-+.....
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t-~~~~y~v~~~~~~-s~-~~~~~~~~~--- 74 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST-WPNYYQVIFKALS-SG-YGYIDVDLT--- 74 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC-ChhhhheeeeEec-cC-cceeeccce---
Confidence 48899888877776666666655554433321 12334455666665333 4456666666654 22 222222221
Q ss_pred CcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242 (245)
Q Consensus 198 ~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~ 242 (245)
..+....+.+.+.+.+ .+.|..|.+.++..+.-++..
T Consensus 75 ------~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~ 111 (1087)
T KOG4228|consen 75 ------TRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGE 111 (1087)
T ss_pred ------eecccCCCCCcchhhh--hhcccccccccccccCCcccc
Confidence 4456667777777777 799999998888876665544
No 423
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=66.41 E-value=27 Score=21.25 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=44.1
Q ss_pred EeecceEEecCCCeEEEEEEEeecCCC-eEEEEECC--EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 53 SVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDG--TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
.+.|+...+..|+++.+.|... .+.| .+.|.-.- ..+..+.. =..+.+.++.. | ....|.+.-...
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~~~~~g~~--------W~~f~LsnV~~-d-s~~~C~~~C~g~ 75 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKTELDSGPQ--------WKAFQLSNVTE-D-SSPLCFFNCSGE 75 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSEEEEEEEETT--------EEEEEEEEE-S-C-EEEEEEEEETTE
T ss_pred EEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecCCcccCCCCc--------EEEEEEEcccc-C-CeEEEEEEcCCe
Confidence 3456677788999999999975 4444 44554221 12222111 12577888875 3 567898887654
Q ss_pred eeEEEEEEEe
Q psy12131 130 SSQQFIQLSG 139 (245)
Q Consensus 130 ~~~~~~~~~~ 139 (245)
....++.+.+
T Consensus 76 Q~~~~~~ItV 85 (91)
T PF03921_consen 76 QSSASANITV 85 (91)
T ss_dssp EEEEEEEEEE
T ss_pred EEEeEEeeEE
Confidence 4445544443
No 424
>PHA03290 envelope glycoprotein I; Provisional
Probab=64.83 E-value=21 Score=27.41 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=26.2
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+--|.|.+.+.+|+|.|.-+++-.... ...-+.+.+.
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~-~sDvF~lsv~ 164 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSR-LFDGFFLGLN 164 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCc-ccceEEEEEE
Confidence 445999999999999999999965433 3344444443
No 425
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=63.70 E-value=31 Score=21.02 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=9.0
Q ss_pred CCeeEEEEEeCCC
Q psy12131 155 PDGYRLVWQVDTY 167 (245)
Q Consensus 155 ~~~~~l~~~~~~~ 167 (245)
+...+|.|.+.+.
T Consensus 15 ~~~~tL~C~a~gF 27 (94)
T cd05767 15 GEPNTLICFVDNF 27 (94)
T ss_pred CCCeEEEEEEEEE
Confidence 3456899999553
No 426
>KOG4597|consensus
Probab=62.84 E-value=8.4 Score=31.01 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=30.7
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
...|.|-+....|+|-|+|.+.+..|. ..+.+.+.+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~-~~rdv~c~s~ 292 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGF-LRRDVPCSSV 292 (560)
T ss_pred eeeEEEcchhhcCCCceeeccccccce-eeccceeeee
Confidence 445999999999999999999999887 5666666554
No 427
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=61.86 E-value=36 Score=21.09 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=11.2
Q ss_pred CCCeeEEEEEeCCCC
Q psy12131 154 GPDGYRLVWQVDTYS 168 (245)
Q Consensus 154 ~~~~~~l~~~~~~~~ 168 (245)
.+..+.|.|.+.+..
T Consensus 18 ~~~~atLtClV~~f~ 32 (99)
T cd04986 18 LGSSASLTCTLSGLR 32 (99)
T ss_pred cCCccEEEEEEeccC
Confidence 467889999995543
No 428
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=61.84 E-value=54 Score=26.81 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=19.9
Q ss_pred eEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131 204 QSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243 (245)
Q Consensus 204 ~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~ 243 (245)
..+.+.+|.+++.|.|++.+.+ .+..+..-.++|.+.
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~~---~~~~s~~g~~rT~p~ 100 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVDG---GGQTSPVGRFRTAPD 100 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE-----TTEE---EEEE--TT
T ss_pred eecccCCCCCCceEEEEEEEec---CCCCCCceEEEcCCC
Confidence 6688999999999999988822 244555667777753
No 429
>PHA03283 envelope glycoprotein E; Provisional
Probab=61.68 E-value=10 Score=31.01 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.1
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
|+...++-.|.|.|+..+++|.|.|.+.-+
T Consensus 308 l~~~~~~v~L~f~nap~~~SGLYVfVv~yN 337 (542)
T PHA03283 308 IQPAQNRVDLLFKNAPASASGLYVFVLLYN 337 (542)
T ss_pred ceecCCCcceEeccCCcccCceEEEEEEEC
Confidence 455566677999999999999999999844
No 430
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=61.54 E-value=19 Score=29.10 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=0.0
Q ss_pred eEEEec--CCCCCceEEEEEEEEecCCCC
Q psy12131 204 QSYNIT--GLQLFTQYEASVLAKNRFGWS 230 (245)
Q Consensus 204 ~~~~i~--~l~~~~~y~~~v~a~N~~G~~ 230 (245)
..+.|. .|.++..|.|++.|.+..|..
T Consensus 260 ~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~ 288 (440)
T PF02010_consen 260 SNLVIDPGVLEPGSTYTFRLTVTDSSGSS 288 (440)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 344444 589999999999999997765
No 431
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=60.85 E-value=36 Score=20.85 Aligned_cols=14 Identities=0% Similarity=0.019 Sum_probs=10.2
Q ss_pred CCCeeEEEEEeCCC
Q psy12131 154 GPDGYRLVWQVDTY 167 (245)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (245)
.+..+.|.|.+.+-
T Consensus 15 ~~~~~tL~C~a~gF 28 (96)
T cd07697 15 KQGQGIYLCLLENF 28 (96)
T ss_pred cCCCEEEEEEEEEE
Confidence 34678999999553
No 432
>PHA03281 envelope glycoprotein E; Provisional
Probab=59.37 E-value=10 Score=31.13 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.8
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEEcC
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIASNN 33 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 33 (245)
+.+.+++..|.|.++..+++|.|.|.+.-+
T Consensus 468 L~~~~n~vdL~F~nApasaSGLYVfVl~yN 497 (642)
T PHA03281 468 LEIHDGGSALKFVDAAESLSGLYVFIIHFN 497 (642)
T ss_pred ccccCCCcceEeccCCcccCceEEEEEEEC
Confidence 344566777999999999999999999854
No 433
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=57.26 E-value=8.6 Score=22.15 Aligned_cols=15 Identities=27% Similarity=0.239 Sum_probs=12.7
Q ss_pred CCCCCceEEEEEEEE
Q psy12131 210 GLQLFTQYEASVLAK 224 (245)
Q Consensus 210 ~l~~~~~y~~~v~a~ 224 (245)
.|+++..|.|.|+|+
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 478999999999874
No 434
>PHA03189 UL14 tegument protein; Provisional
Probab=56.99 E-value=87 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=16.1
Q ss_pred CCCCCCeEEEEEEEeCC-ceeEEE
Q psy12131 112 IKDTDFGNYMCQASNNL-GSSQQF 134 (245)
Q Consensus 112 ~~~~d~g~y~C~~~n~~-g~~~~~ 134 (245)
+..+.+|.|.|...|.. |....+
T Consensus 140 v~t~taG~Y~CvLrN~tHglv~~r 163 (348)
T PHA03189 140 VSTSTAGMYECVLRNETHGLVLQR 163 (348)
T ss_pred EEecccceEEEEeccccceeeeEE
Confidence 45567999999999865 443333
No 435
>KOG1026|consensus
Probab=56.38 E-value=85 Score=27.67 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=43.0
Q ss_pred EecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131 60 HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139 (245)
Q Consensus 60 ~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~ 139 (245)
.+..+..+++.|...+.+.|.+.|+..+............. .....+ ...+.|.+.|..|.....+.+..
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c------~~~~~~----~~~~~c~~E~~~~~~~~~v~~~~ 272 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC------RSECEV----LENDLCIAENAVARSNPSILLVV 272 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecccccccCCCcccccc------ccccee----eechhhHHHHhhhhcCceeeeEE
Confidence 34567889999999999999999998665444322111000 000000 11288999998887665555444
No 436
>PHA03289 envelope glycoprotein I; Provisional
Probab=56.19 E-value=34 Score=26.20 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=25.9
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
+--|.|.+.+.+|+|.|.-+++-.... ...-+.+.+
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~-~sDvF~lsv 156 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRN-KSDIFRTSV 156 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCc-cCceEEEEE
Confidence 345999999999999999999966443 334444443
No 437
>PHA03112 IL-18 binding protein; Provisional
Probab=55.87 E-value=58 Score=21.67 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=19.5
Q ss_pred cCCCeEEEEEEEeec-CC-CeEEEEECC
Q psy12131 62 APDMRAEIICNVYAN-PP-AKVEWFRDG 87 (245)
Q Consensus 62 ~~g~~~~l~C~~~~~-~~-~~~~w~~~~ 87 (245)
..++.+.|.|.+-+. |. .-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 468899999999765 33 468899654
No 438
>PHA03292 envelope glycoprotein I; Provisional
Probab=53.53 E-value=35 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=25.5
Q ss_pred ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46 (245)
Q Consensus 11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 46 (245)
.-|.|.+.+.+|+|.|.-++.-+... ...-+.|.+
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~-~aDvF~lsv 162 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAP-TADVFGLSA 162 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCc-cCceeEEEE
Confidence 44999999999999999999976444 233344433
No 439
>PHA03240 envelope glycoprotein M; Provisional
Probab=52.95 E-value=31 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=20.1
Q ss_pred CceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131 102 SEKHSLLVRHIKDTDFGNYMCQASNNLG 129 (245)
Q Consensus 102 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g 129 (245)
..+++|.|..+..+|.|+|.-.-....|
T Consensus 102 C~NstL~i~~vn~sd~~nYcr~k~~~~g 129 (258)
T PHA03240 102 CHNSTLIIAHLNLSDAGEYCRKKCPPKG 129 (258)
T ss_pred eccceEEEEEEeecCcchhhhccCCCCC
Confidence 3567899999999999998544333333
No 440
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=52.67 E-value=48 Score=19.73 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=36.5
Q ss_pred cCCCeeEEEEEeCCCCCceEEEEEEEeecC--CCCeEEEeeCCCCCCCcceeeeEEEe-cCCCCCceEEEEEE
Q psy12131 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREE--LTPWRNIVIPSDGSLAGPIYTQSYNI-TGLQLFTQYEASVL 222 (245)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~y~~~v~ 222 (245)
..+..+.++|+..+..+ ..|.|....... ...+..+...... ......+.+ .++..+..|.+++.
T Consensus 10 ~~g~~~~I~W~~~~~~~-~~~~I~L~~g~~~~~~~~~~ia~~v~~----~~gs~~~~~p~~l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 10 TAGQPITITWTSDGTDP-GNVTIYLCNGNNTNLNFVQTIASNVSN----SDGSYTWTIPSDLPSGGDYFIQIV 77 (93)
T ss_pred ECCCcEEEEEeCCCCCC-cEEEEEEEcCCCCCcceeEEEEecccC----CCCEEEEEcCCCCCCCCcEEEEEE
Confidence 45678999999965433 456666665541 1223222211111 002255666 45888888999866
No 441
>KOG0200|consensus
Probab=50.29 E-value=1.7e+02 Score=25.26 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=57.7
Q ss_pred EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec-CCeEEee-cceEEecCCCeEEEEEEEeecCCCeEEEE
Q psy12131 7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVEWF 84 (245)
Q Consensus 7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~w~ 84 (245)
......+.+..+...|.|.|+|.+.+ .. ...... .... .+..... +.......+....+ +...+.+.+.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~y~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 81 (609)
T KOG0200|consen 9 RINHWFLIIDSVVPGDKGFYTCLVSN--IN-LIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWG 81 (609)
T ss_pred eeccceEEEEEEEecCCccEEEEEec--Cc-eeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceee
Confidence 33455688999999999999999999 11 111111 1111 1111111 11122223333333 222335566665
Q ss_pred ECCEEe-----ccCCc-EEE---------EecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131 85 RDGTAI-----TLGGR-IDM---------HVSSEKHSLLVRHIKDTDFGNYMCQASNN 127 (245)
Q Consensus 85 ~~~~~~-----~~~~~-~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 127 (245)
...... ..... ... ........+.+.++...+.+.|.|.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 139 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRT 139 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCc
Confidence 432110 00000 000 00224457788899999999999988763
No 442
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=45.71 E-value=87 Score=20.70 Aligned_cols=71 Identities=17% Similarity=0.049 Sum_probs=34.8
Q ss_pred cCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP 232 (245)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~ 232 (245)
...-.+.|+|..-.+.....|.+.+.... -|. -... . .... ......++.|+++|...|..|-+..
T Consensus 35 ~~~v~V~VtwN~WsG~~Gd~~kly~dG~~---V~t-G~~~--~-------~~~a-~~~~~~gG~y~~~VeLCN~~GCS~S 100 (133)
T PF08329_consen 35 NDQVDVSVTWNVWSGTNGDTAKLYFDGVL---VWT-GPSP--Q-------QKSA-TFTVTKGGRYQMQVELCNADGCSTS 100 (133)
T ss_dssp -SSEEEEEEEE-SSS---SEEEEEETTEE---EEE-EE----S-------EEEE-EEEE-S-EEEEEEEEEEETTEEEE-
T ss_pred cCceEEEEEEEEecCCCCCEEEEEECCEE---EEe-CCCc--c-------CceE-EEEecCCCEEEEEEEEECCCCcccC
Confidence 44557899999954445556665543321 121 1111 0 0122 2244689999999999999996543
Q ss_pred CcceEE
Q psy12131 233 SKAYVF 238 (245)
Q Consensus 233 s~~~~~ 238 (245)
..+.+
T Consensus 101 -~~~~V 105 (133)
T PF08329_consen 101 -APVEV 105 (133)
T ss_dssp ---EEE
T ss_pred -CCEEE
Confidence 34443
No 443
>KOG4152|consensus
Probab=45.49 E-value=1.3e+02 Score=25.07 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131 210 GLQLFTQYEASVLAKNRFGWSRPSKAY 236 (245)
Q Consensus 210 ~l~~~~~y~~~v~a~N~~G~~~~s~~~ 236 (245)
+....-...||+.|+|..|.|......
T Consensus 766 d~t~~paivfri~aknekGyGpatqvr 792 (830)
T KOG4152|consen 766 DITTGPAIVFRIVAKNEKGYGPATQVR 792 (830)
T ss_pred ccccCcceEEEEEecCCCCCCcceEEE
Confidence 344566788999999999999877643
No 444
>PHA03291 envelope glycoprotein I; Provisional
Probab=45.03 E-value=66 Score=25.08 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=26.9
Q ss_pred cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47 (245)
Q Consensus 10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 47 (245)
+--|.|.+...+|+|.|.-+++-+... ...-+.|.+.
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat-~adlF~lg~~ 164 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGAT-NASLFPLGLA 164 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCc-ccceEEEeee
Confidence 345999999999999999999976444 3334555544
No 445
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=41.38 E-value=58 Score=17.46 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=27.3
Q ss_pred CcceEEEeecceEEEeccCCC---CCEEEEEEEEcCCCC
Q psy12131 1 EKEIELLYNRESLDLDRVTLK---LAGLYQCIASNNIGE 36 (245)
Q Consensus 1 ~~~~~~~~~~~~L~i~~~~~~---d~G~Y~C~~~~~~~~ 36 (245)
|..+++..++...++..+... +.+.|.|.=.+..+.
T Consensus 4 GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 4 GDVVQLKSGGPRMTVTEVGPNAGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCEEEEccCCCCeEEEEccccccCCCCeEEEEeCCCCCc
Confidence 456788888888999887654 778999987776554
No 446
>PHA03270 envelope glycoprotein C; Provisional
Probab=41.17 E-value=2e+02 Score=23.48 Aligned_cols=78 Identities=9% Similarity=0.101 Sum_probs=52.0
Q ss_pred eeEEEEccCCCCCCeEEEEEEEeCCce--eEEEEEEEecCCCCccccCccccCCCeeEEEEEe-CCCCCceEEEEEEEee
Q psy12131 104 KHSLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV-DTYSGIIQYLLKFRER 180 (245)
Q Consensus 104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 180 (245)
...|.|..+.....|.|.-...+..+. ....++|...-.|-..+.....+.++...-.|.+ +-++|-..+..||++.
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 346999999999999999987765543 2334444433233334444556889999999998 4445656666777776
Q ss_pred c
Q psy12131 181 E 181 (245)
Q Consensus 181 ~ 181 (245)
.
T Consensus 261 ~ 261 (466)
T PHA03270 261 D 261 (466)
T ss_pred c
Confidence 5
No 447
>PHA03240 envelope glycoprotein M; Provisional
Probab=36.62 E-value=30 Score=24.67 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=22.5
Q ss_pred eEEEeecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGE 36 (245)
Q Consensus 4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 36 (245)
+.+.=.+++|.|.++..+|.|+|.-.-....|.
T Consensus 98 i~y~C~NstL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 98 ILYECHNSTLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred eEEEeccceEEEEEEeecCcchhhhccCCCCCC
Confidence 334445678999999999999996444433343
No 448
>PHA03189 UL14 tegument protein; Provisional
Probab=36.30 E-value=45 Score=25.40 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=18.9
Q ss_pred ccCCCCCEEEEEEEEcCCCCceeeEE
Q psy12131 17 RVTLKLAGLYQCIASNNIGESTSKNF 42 (245)
Q Consensus 17 ~~~~~d~G~Y~C~~~~~~~~~~~~~~ 42 (245)
++..+-+|.|.|...|.........+
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf 164 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRF 164 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEe
Confidence 56778899999999997654333333
No 449
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=35.29 E-value=1.5e+02 Score=20.31 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=26.7
Q ss_pred eeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131 202 YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242 (245)
Q Consensus 202 ~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~ 242 (245)
....+.+.+|.+++.|.+.-...+. -..+.|..+..+|.+
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkg-tstESS~~i~msT~n 139 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKG-TSTESSNEIPMSTLN 139 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecC-ccceecceecccccc
Confidence 3466888999999999988666555 234445555555443
No 450
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=35.27 E-value=1.7e+02 Score=21.14 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=38.3
Q ss_pred ceEEE-eccCCCCCEEEEEEEEcCCCCceeeE----EEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEE
Q psy12131 11 ESLDL-DRVTLKLAGLYQCIASNNIGESTSKN----FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEW 83 (245)
Q Consensus 11 ~~L~i-~~~~~~d~G~Y~C~~~~~~~~~~~~~----~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w 83 (245)
++|.+ .+....-.-..+|.+.-......... ..-.|..+|.+... . .+. ...|.+.--|. -.+.|
T Consensus 39 Stl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv~-----F-~~g--~AVC~A~CVP~~~v~l~W 110 (211)
T PF02124_consen 39 STLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSVR-----F-EDG--YAVCTARCVPRGNVTLRW 110 (211)
T ss_pred EEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEEE-----e-cCC--EEEEEcceeeCCCeEEEE
Confidence 44666 34444555688999886544322222 22233345554332 1 222 34477765553 48999
Q ss_pred EECCEEe
Q psy12131 84 FRDGTAI 90 (245)
Q Consensus 84 ~~~~~~~ 90 (245)
..++...
T Consensus 111 ~v~d~~~ 117 (211)
T PF02124_consen 111 SVGDDPS 117 (211)
T ss_pred EECCccC
Confidence 9877654
No 451
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=32.81 E-value=3.4e+02 Score=23.80 Aligned_cols=195 Identities=11% Similarity=0.088 Sum_probs=95.4
Q ss_pred ccCCCCCEEEE--EEEEcCCCC---ceeeEEEEEEe--cCCeEEee--cceEEecCCCeEEEEEEEeecCCCeEEEEECC
Q psy12131 17 RVTLKLAGLYQ--CIASNNIGE---STSKNFIVNVI--YPPEVSVE--KQWIHTAPDMRAEIICNVYANPPAKVEWFRDG 87 (245)
Q Consensus 17 ~~~~~d~G~Y~--C~~~~~~~~---~~~~~~~l~v~--~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~ 87 (245)
+-.+..+|.|+ |.+.+.... -..+.+...|. .++.+..- ........|+.+.+...+.|...........|
T Consensus 249 ~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~llYrf~I~G 328 (667)
T PRK14081 249 SYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKELLYRFIIKG 328 (667)
T ss_pred EEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCceEEEEEECC
Confidence 44466788885 566553321 13344445553 22332111 01112346889999999988666655544445
Q ss_pred EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC--Cce----eEEEEEEE--ecCCCCcc-c-----cCcccc
Q psy12131 88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN--LGS----SQQFIQLS--GIPNIPVF-Q-----KSSRRL 153 (245)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~--~g~----~~~~~~~~--~~~~~p~~-~-----~~~~~~ 153 (245)
......+ + .....+. ..+...|.|...+.-. ... ....+... ..+..|.. . ......
T Consensus 329 ~~~e~~~-Y-----~~~n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~l 399 (667)
T PRK14081 329 KESEDSG-Y-----IRNNIYT---WKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHIL 399 (667)
T ss_pred cEEeecc-c-----cccceEE---EeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceE
Confidence 4332211 1 1111222 2344678887765532 211 12233333 33334431 1 113456
Q ss_pred CCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12131 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233 (245)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s 233 (245)
.|+.+.+.+.+.+...+ .|..+-+..+ .+..-.--... ..+.+.. ...+.|++.|.|.|....-..-
T Consensus 400 vG~~i~i~v~a~gg~~~-lY~f~ik~ng---~~ve~~~Y~~~--------~~~~f~P-~~~G~Y~IeV~vKdk~S~~~yD 466 (667)
T PRK14081 400 KGEEIKIRVIAEGGTNL-RYSFIIKKDG---KEEEKIDYGKN--------NWVNFIP-EEKGNYELEVRVKDKYSDKEYD 466 (667)
T ss_pred eCCeEEEEEEecCCCeE-EEEEEEEECC---EEEEEeecccc--------cEEEEEE-CCCeeEEEEEEEecccCchhcc
Confidence 68899999888555332 3443433322 12111100000 2333332 5677999999999998765443
No 452
>KOG3611|consensus
Probab=31.44 E-value=67 Score=28.25 Aligned_cols=37 Identities=30% Similarity=0.248 Sum_probs=26.8
Q ss_pred EEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49 (245)
Q Consensus 13 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 49 (245)
|.+..++..|.|.|.|.+....-......+.+.+...
T Consensus 614 lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~~~ 650 (737)
T KOG3611|consen 614 LVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVARP 650 (737)
T ss_pred eeEEEEeeccCcccccccccCccccceEEEeeeecCc
Confidence 8889999999999999999754333445555555443
No 453
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=31.18 E-value=1.1e+02 Score=17.47 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.7
Q ss_pred CCCceEEEEEEEEecCC
Q psy12131 212 QLFTQYEASVLAKNRFG 228 (245)
Q Consensus 212 ~~~~~y~~~v~a~N~~G 228 (245)
.....|.+++.+.|..|
T Consensus 52 ~~~G~y~v~l~v~n~~g 68 (79)
T smart00089 52 TKPGTYTVTLTVTNAVG 68 (79)
T ss_pred CCCcEEEEEEEEEcCCC
Confidence 35678999999999998
No 454
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=30.47 E-value=4.1e+02 Score=24.03 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=27.3
Q ss_pred eEEEecCCCCCceEEEEEEEEecCCCCCCCc-ceEEec
Q psy12131 204 QSYNITGLQLFTQYEASVLAKNRFGWSRPSK-AYVFAT 240 (245)
Q Consensus 204 ~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~-~~~~~t 240 (245)
..+.+.++-. ..|..+|+|.|.+|....-+ ...++-
T Consensus 660 ~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i 696 (952)
T COG4733 660 AGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFAL 696 (952)
T ss_pred cceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEe
Confidence 5688888866 89999999999999765444 444443
No 455
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=29.98 E-value=82 Score=17.50 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.8
Q ss_pred CCceEEEEEEEEecCCC
Q psy12131 213 LFTQYEASVLAKNRFGW 229 (245)
Q Consensus 213 ~~~~y~~~v~a~N~~G~ 229 (245)
..+.|.+++.|.|..|.
T Consensus 50 ~~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 50 SPGTYTVTLTVTNGVGS 66 (69)
T ss_dssp SSEEEEEEEEEEETTSE
T ss_pred CCeEEEEEEEEEECCCC
Confidence 47799999999999885
No 456
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=29.60 E-value=61 Score=18.64 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.7
Q ss_pred CCCceEEEEEEEEecCCCCCC
Q psy12131 212 QLFTQYEASVLAKNRFGWSRP 232 (245)
Q Consensus 212 ~~~~~y~~~v~a~N~~G~~~~ 232 (245)
.....|.+++.+.|..|.+..
T Consensus 54 ~~~G~y~v~l~v~d~~g~~~~ 74 (81)
T cd00146 54 TKPGTYTVTLTVTNAVGSSST 74 (81)
T ss_pred CCCcEEEEEEEEEeCCCCEEE
Confidence 467789999999999876543
No 457
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=29.28 E-value=1.3e+02 Score=18.95 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=21.6
Q ss_pred eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 44 (245)
Q Consensus 12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 44 (245)
.|++.+...-+.-.++|......|. ..+.++|
T Consensus 94 vL~vt~t~Kf~h~rfTCVL~t~DGv-skk~iw~ 125 (126)
T PF05566_consen 94 VLHVTDTEKFAHYRFTCVLTTIDGV-SKKNIWL 125 (126)
T ss_dssp EEEE--TTTTTTEEEEEEEEETTEE-EEE----
T ss_pred eeeecchhhccceeEEEEEEcCCcc-ccccccC
Confidence 4888999999999999999988776 4555443
No 458
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=26.85 E-value=1.6e+02 Score=17.98 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=44.8
Q ss_pred CCCeeEEEEEeCCC-CCceEEEEEEEeecCCCCeEEEe---eCCCCCCCcceeeeEEEecCCCC----CceEEEEEEEEe
Q psy12131 154 GPDGYRLVWQVDTY-SGIIQYLLKFREREELTPWRNIV---IPSDGSLAGPIYTQSYNITGLQL----FTQYEASVLAKN 225 (245)
Q Consensus 154 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~----~~~y~~~v~a~N 225 (245)
..+.+..+|.+... ++-..|.+.|+... ...-..+. ...+ ....+.+..... ...|.+.|.+.|
T Consensus 11 ~~~~m~CtW~~g~~~~~~t~y~L~~~~~~-~~~~~eC~~y~~~~~-------~~~gC~~~~~~~~~~~~~~~~v~V~~ss 82 (99)
T PF09240_consen 11 NLEYMNCTWEPGKEAPPDTQYTLYYWYSP-LEEEKECPHYSKDSG-------TRIGCQFPVSEIDSSEFSQYNVCVNGSS 82 (99)
T ss_dssp TTTEEEEEEECCTTCSTTEEEEEEEEETT-SSSEEEESEEEESTS-------SEEEEEEESCTT-TTTTSEEEEEEEEEE
T ss_pred CCEEEEEEECCCCCCCCcccEEEEEEcCC-CCccccCCCccccCC-------ceeEEEecCCCccccccceEEEEEEecc
Confidence 35678899998443 45578998888864 22222221 1111 125566665554 347999999999
Q ss_pred cCCCCCCC
Q psy12131 226 RFGWSRPS 233 (245)
Q Consensus 226 ~~G~~~~s 233 (245)
..|.-.+.
T Consensus 83 ~~~~i~~~ 90 (99)
T PF09240_consen 83 SAGSIRSS 90 (99)
T ss_dssp TTEEEECE
T ss_pred CCCccCCc
Confidence 98875543
No 459
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=26.84 E-value=1.3e+02 Score=22.32 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=25.9
Q ss_pred EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE
Q psy12131 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 52 (245)
Q Consensus 5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 52 (245)
=|.+.++ -.|-+++.+|+|.|+..... .+.+..+....+|.+
T Consensus 68 cI~den~-qEILSvt~dda~~YTV~c~g-----~~~t~~~~~~~~~~v 109 (292)
T PRK15372 68 CILDEDS-QEILSVTLDDVGNYTVNCQG-----YSETHHLTMATEPGV 109 (292)
T ss_pred EEEcCCC-ceeEEEEEcCCCceEEEeCC-----cceEEEeeccCCCcc
Confidence 3444444 56778899999999876652 244455555555543
No 460
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=26.67 E-value=95 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=24.2
Q ss_pred ecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131 208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241 (245)
Q Consensus 208 i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~ 241 (245)
+..|..++.|++.|.|....|.... ..+.|.-.
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~-~si~F~y~ 148 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQST-KSISFSYM 148 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEE-EEEEEEEe
Confidence 4577899999999999999997533 24444433
No 461
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=26.29 E-value=1.1e+02 Score=15.96 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=12.6
Q ss_pred CceEEEEEEEEecCC
Q psy12131 214 FTQYEASVLAKNRFG 228 (245)
Q Consensus 214 ~~~y~~~v~a~N~~G 228 (245)
...|.|.|.|.+..|
T Consensus 35 ~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 35 PGTYTFTVTATDGSG 49 (49)
T ss_pred ccEEEEEEEEEcCCC
Confidence 368999999998876
No 462
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.69 E-value=1.3e+02 Score=16.82 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=11.4
Q ss_pred CCCeEEEEEEEeecCCCeEEEEE
Q psy12131 63 PDMRAEIICNVYANPPAKVEWFR 85 (245)
Q Consensus 63 ~g~~~~l~C~~~~~~~~~~~w~~ 85 (245)
.|.+++| .|.+...+.|++
T Consensus 4 ~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 4 VGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EcCcEEE----eCCCCCceEEEE
Confidence 4555555 444445789984
No 463
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=70 Score=17.52 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=13.1
Q ss_pred CCCCceEEEEEEEEecC
Q psy12131 211 LQLFTQYEASVLAKNRF 227 (245)
Q Consensus 211 l~~~~~y~~~v~a~N~~ 227 (245)
....+.|.|++.|.|.-
T Consensus 9 kdk~Ge~rfrlkA~N~e 25 (59)
T COG3422 9 KDKAGEYRFRLKAANGE 25 (59)
T ss_pred EcCCCcEEEEEEccCcc
Confidence 45677899999998864
No 464
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=23.10 E-value=2.4e+02 Score=19.40 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.3
Q ss_pred eEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131 105 HSLLVRHIKDTDFGNYMCQASNNLGS 130 (245)
Q Consensus 105 ~~l~i~~~~~~d~g~y~C~~~n~~g~ 130 (245)
-.|.|.+...+|.|.|..++.-....
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCC
Confidence 35889999999999999988865433
No 465
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=20.79 E-value=2.7e+02 Score=18.54 Aligned_cols=41 Identities=5% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEEecCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeec
Q psy12131 135 IQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFRERE 181 (245)
Q Consensus 135 ~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~ 181 (245)
+.+...|.|. .+..|.++.+.|.. .++-.-..|.|.|-+..
T Consensus 33 F~v~tmPVpk------~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~d 75 (137)
T PF12988_consen 33 FTVETMPVPK------KIKKGETVEIRCELKREGNYADTRYTIRYFQPD 75 (137)
T ss_dssp EEEEE----S------S--TTEEEEEEEEEEESS--SS---EEEEE-SS
T ss_pred cEEEEecccc------ccCCCCEEEEEEEEecCceecccEEEEEEEeec
Confidence 4445555543 35778999999998 55544456777775544
Done!