RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12131
(245 letters)
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 121 bits (306), Expect = 2e-34
Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 28/228 (12%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW 83
Y +S + + +Y P++ ++T + I C V+A P A + W
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 84 FRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--- 138
FRDG + I ++ + L V + DFGNY C A N +G L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Query: 139 --GIPNIPVFQKSSRRLGPDGYRLVW---QVDTYSGIIQYLLKFREREELTPWRNIVIPS 193
P+I + S ++ + + I++Y ++R E
Sbjct: 113 TPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 167
Query: 194 DGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
+ I GL+ T Y + A N G S A F T+
Sbjct: 168 EA-----SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210
Score = 37.5 bits (87), Expect = 0.002
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---------- 52
+I + L++ + G Y C A N IG+ S FI+ P
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQVEPYS 126
Query: 53 -SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH 111
+ + Q+ I+ Y K EW G + D +S + + +
Sbjct: 127 STAQVQFDEPEATGGVPILK--Y-----KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVG 179
Query: 112 IK 113
+K
Sbjct: 180 LK 181
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 123 bits (310), Expect = 3e-33
Identities = 57/253 (22%), Positives = 99/253 (39%), Gaps = 26/253 (10%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
E++ + SL + V L +G Y C A++ IG K+ +++ Y P+ + ++
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNY 120
I C+V +NPPA + W RD + + + + K L + D DFG Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 121 MCQASNNLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVWQVDTYSG---II 171
C A+N++G+ Q L+ +P+ P + + S ++ + G I
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTA-----KVSFNKPDSHGGVPIH 228
Query: 172 QYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231
Y + +E W+ + + L+ T YE V A N G
Sbjct: 229 HYQVDVKEVASEI-WKIVRSHGV--------QTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279
Query: 232 PSKAYVFATEGAE 244
SK +F T
Sbjct: 280 YSKIEIFQTLPVR 292
Score = 73.7 bits (181), Expect = 2e-15
Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 50/246 (20%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------------EVSVEKQWI 59
L++ + G Y C A+N+IG + +I+ + P + + + +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADVPSSPYGVKIIELSQTTAKVSFN 217
Query: 60 HTAPDMRAEIIC-NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
I V A W + + +++ +++
Sbjct: 218 KPDSHGGVPIHHYQVDVKEVASEIWKI------------VRSHGVQTMVVLNNLEPNTTY 265
Query: 119 NYMCQASNNLGSSQ---------QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTY 167
A N G ++ P+I + ++L D
Sbjct: 266 EIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHG-----QPSSGKSFKLSITKQDDGG 320
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ I++Y++K+R +++ W + + + LQ YE + A NR
Sbjct: 321 APILEYIVKYRSKDKEDQWLEKKVQGN--------KDHIILEHLQWTMGYEVQITAANRL 372
Query: 228 GWSRPS 233
G+S P+
Sbjct: 373 GYSEPT 378
Score = 62.9 bits (153), Expect = 9e-12
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDM 98
+I + + + + ++C+ P ++ W R T GRI++
Sbjct: 4 IIQLKNETTYE-------NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 99 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
SL ++ +K +D G Y C+A++ +G Q+ + L
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 114 bits (286), Expect = 2e-30
Identities = 54/238 (22%), Positives = 86/238 (36%), Gaps = 29/238 (12%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV---IYPPEVSVEKQWIHTAPDMRA 67
L + VT A +YQ A+N G S + + V V I+ P+ +H
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 68 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQASN 126
I P + W + I G + V+ SL+ ++ D G Y+ A N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 127 NLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKF 177
G Q+ ++L +P+ P V S + L W G I Y+++
Sbjct: 183 RFGIDQKTVELDVADVPDPPRGVKVSDVSRDSV-----NLTWTEPASDGGSKITNYIVEK 237
Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
W G Y + L T Y+ V+A+N+FG S+PS+
Sbjct: 238 CATTAER-WLR---------VGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEP 285
Score = 64.8 bits (158), Expect = 2e-12
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHS 106
P E + ++ A ++C V +P V+W+R G I G + + H
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L++ + D D Y +A+N GS L
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 110 bits (276), Expect = 4e-30
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
+ + N + L + V G+Y C A+N +G + + V P+++ +
Sbjct: 52 DTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK 111
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
++A + C NP V W + +A+ RI + E SL + +++ D G Y
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQY 168
Query: 121 MCQASNNLGSSQ-QFIQLSGIPNIPVF 146
C A N+LG++ + ++L + VF
Sbjct: 169 RCVAKNSLGTAYSKLVKL----EVEVF 191
Score = 58.2 bits (141), Expect = 1e-10
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P ++ + + + A +C V + P ++ W R+ I L + L
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLT 65
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQ 133
+ ++D+D G Y C A+N +G + +
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVE 90
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 109 bits (275), Expect = 8e-28
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
+ + + L++ ++++ +G Y C A N G ++S + + V PP + + T
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 397
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ C + PP +V W +D + G + + + S+ + ++ D G Y C
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457
Query: 123 QASNNLGSSQQFIQLS 138
+ASN++GS ++
Sbjct: 458 KASNDVGSDTCVGSIT 473
Score = 98.3 bits (245), Expect = 9e-24
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
++ L+ N +L + +VT AG Y C ASN G+ + + V PP + +
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIV 303
Query: 63 -PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
D C + +P KV W++D T I + M L + ++ D G+Y
Sbjct: 304 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 363
Query: 122 CQASNNLGSSQQFIQLSGIPNIPVFQK 148
C+A N GS+ L + PVF+K
Sbjct: 364 CEAHNAAGSASSSTSLK-VKEPPVFRK 389
Score = 97.2 bits (242), Expect = 2e-23
Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWI 59
+++ N SL +++V G Y C A N++G S + ++ + PP + + + +
Sbjct: 53 KMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSFARKLKDV 111
Query: 60 HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 119
H C + + P +V W++DG + + +L + + G
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171
Query: 120 YMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSR 151
Y C ASN LG++ +L+ P F
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPV 205
Score = 94.5 bits (235), Expect = 2e-22
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
S+ + V G YQC ASN++G + + + PP + I T +
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQ 496
Query: 69 IICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
+ + P V WF+D I I + S +L + + G Y CQ N
Sbjct: 497 LQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNE 556
Query: 128 LGSSQQFIQLS 138
G+ + F LS
Sbjct: 557 AGTQECFATLS 567
Score = 92.9 bits (231), Expect = 6e-22
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWI 59
+ ++N +L + + G Y C ASN +G ++S + + + PP ++ +
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSV 207
Query: 60 HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 119
A C+V P K+ W +D I GG M + +L V + D G
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 120 YMCQASNNLGSSQQFIQLS 138
Y C ASN G QL
Sbjct: 268 YTCYASNVAGKDSCSAQLG 286
Score = 75.2 bits (185), Expect = 8e-16
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
PP + + A + C V P ++ W+++ T + M + SL+
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 109 VRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKS 149
+ + +D G Y C+A N++G +S + + P F +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARK 107
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 105 bits (265), Expect = 1e-27
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
+ + + L++ ++++ +G Y C A N G ++S + + V PP + + T
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 205
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ C + PP +V W +D + G + + + S+ + ++ D G Y C
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Query: 123 QASNNLGSSQQFIQLS 138
+ASN++GS ++
Sbjct: 266 KASNDVGSYTCVGSIT 281
Score = 102 bits (256), Expect = 3e-26
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
++ L+ N +L + +VT AG Y C ASN G+ S + + V PP + +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIV 111
Query: 63 -PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
D C + +P KV W++D T I + M L + ++ D G+Y
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 171
Query: 122 CQASNNLGSSQQFIQLS 138
C+A N GS+ L
Sbjct: 172 CEAHNAAGSASSSTSLK 188
Score = 70.9 bits (174), Expect = 9e-15
Identities = 25/90 (27%), Positives = 34/90 (37%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
PP ++ + A C+V P K+ W +D I GG M + +L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
V + D G Y C ASN G QL
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 107 bits (268), Expect = 8e-27
Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
++L +L+ G Y C+A + + + V P ++ + T+ E
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
+ C NPP ++ WF+D + I + +L +R ++ D G Y CQA + L
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743
Query: 129 GSSQQFIQLS--GIPNIPVFQK 148
G ++ G ++
Sbjct: 744 GCAKVEAFFIIEGAQEKTNLER 765
Score = 87.9 bits (217), Expect = 5e-20
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---IHTAPDMRAE 68
+L +D VT GLY C AS+ + + V V P V+ + R
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
I PP +++W+++G + I H L + + + D GNY +N +
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTI-----KAGHVLTIMEVSERDTGNYTVILTNPI 404
Query: 129 GSSQQFIQLS 138
+Q +S
Sbjct: 405 SKEKQSHVVS 414
Score = 82.5 bits (203), Expect = 3e-18
Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 22/150 (14%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
N+ L ++ LY+C A N +G + +V PE++++ +
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFHVTRGPEITLQPD-MQPTEQESVS 568
Query: 69 IICNVYANPPAKVEWFRDGTAI--------------------TLGGRIDMHVSSEKHSLL 108
+ C + + W++ G L + + +++ +
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+++ D G+Y+C A + + +
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 74.0 bits (181), Expect = 2e-15
Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 15/158 (9%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDM 65
+++ + + AG+ C A N S +IV V+ V I +
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240
Query: 66 RAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHS--------LLVRHIKDT 115
+ + C ++ W + ++ + ++ S L + + +
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300
Query: 116 DFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSR 151
D G Y C AS+ L + + + P +
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Score = 73.3 bits (179), Expect = 4e-15
Identities = 26/165 (15%), Positives = 45/165 (27%), Gaps = 38/165 (23%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEV---SVEKQWIHTAPDMRA 67
L + V+ + G Y I +N I + S + V PP++ S+
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 68 EIICNVYANP-PAKVEWFRDGTAITL---------------------------------G 93
+ C VYA P P + W+
Sbjct: 442 TLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501
Query: 94 GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ + K + Y C+A N +G ++ I
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546
Score = 69.0 bits (168), Expect = 1e-13
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 11/149 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ----WIHTAPDMRA 67
+L + +V G Y+C S ++ + P SV Q +I +
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 68 EIICNVYANPPAKV--EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
I C + + + + G RI K + + G C+A
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRI---SWDSKKGFTIPSYMISYAGMVFCEAK 203
Query: 126 NNLGS--SQQFIQLSGIPNIPVFQKSSRR 152
N S S +I + I S
Sbjct: 204 INDESYQSIMYIVVVVGYRIYDVVLSPSH 232
Score = 67.1 bits (163), Expect = 5e-13
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
L+ C+ + + P +S++K + + +I C
Sbjct: 9 VALWLCVETRAASVGLPSVSLD----LPRLSIQKDILTIKANTTLQITCR--GQRDLDWL 62
Query: 83 WFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
W + + + L + + D G Y C +S ++ +
Sbjct: 63 WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122
Query: 142 NIPVFQKSSR 151
+ + S +
Sbjct: 123 SPFIASVSDQ 132
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 101 bits (253), Expect = 1e-26
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 9/136 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 70
+ VT + G Y C+ S G S + + + V+ PP RA +
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128
Query: 71 CNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFGNYMC 122
C+ +PP++ WF+DG + + S+ + L+ + +D G Y C
Sbjct: 129 CSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 123 QASNNLGSSQQFIQLS 138
+A N G+ +
Sbjct: 189 EARNGYGTPMTSNAVR 204
Score = 47.6 bits (113), Expect = 6e-07
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHV 100
V + + + ++ C +VEW D T + + V
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI----PNIPVFQKSS 150
+ + + + D G Y C S G+S +++ I P+ P S
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS 117
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 100 bits (250), Expect = 2e-26
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVSVEKQWIHT--APDMRAE 68
+L + + G+Y+C GE ++ IV V PP +S+ ++ +
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
C +P + WFR+G I + + L VR+I ++D G Y+C+A+N
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKA 175
Query: 129 GSSQQFIQLS 138
G ++ L
Sbjct: 176 GEDEKQAFLQ 185
Score = 56.3 bits (136), Expect = 5e-10
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
AE++C V ++P V W +T + + ++L + +I +D G Y C+
Sbjct: 20 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 78
Query: 127 NLGSSQQF 134
F
Sbjct: 79 EARGEIDF 86
Score = 34.8 bits (80), Expect = 0.011
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV 46
L + L + + G Y C A+N GE V V
Sbjct: 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 100 bits (251), Expect = 1e-25
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 5/137 (3%)
Query: 7 LYNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEVSVEKQWIHTA--P 63
+ + L + + G Y+C E K+ V V PP V + ++
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYM 121
++C+ P + W +DG I D S + L +R++ D Y+
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270
Query: 122 CQASNNLGSSQQFIQLS 138
C A N G I L
Sbjct: 271 CIAENKAGEQDASIHLK 287
Score = 90.3 bits (224), Expect = 9e-22
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + + AG+Y+C+ + G + V + A I+C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 132 QQFIQLS 138
F +
Sbjct: 182 INFKDIQ 188
Score = 54.1 bits (130), Expect = 6e-09
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 6/107 (5%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKH--- 105
+V + + +C V + + WF + + V
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSSR 151
+L + + D G Y C + G+ + + I +F+ +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-IFQKLMFKNAPT 108
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 97.9 bits (244), Expect = 2e-25
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDM 65
R L + VT +G Y A+N G++TS + V PP Q +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
+ + V P V+++RDG I + + +SLL+ D G Y A+
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 126 NNLGSSQQFIQLS 138
N++G + +L
Sbjct: 180 NSVGRATSTAELL 192
Score = 65.9 bits (161), Expect = 2e-13
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHS 106
P + Q + A ++ P +V WFRDG I+ + +S +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQK 148
L + + + G Y +A+N G + +L P F +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ 108
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 98.0 bits (244), Expect = 2e-25
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
L + L + + G Y C A+N GE K + V P + ++ + T
Sbjct: 51 YILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHI-IQLKNETTYE 108
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHIKDTD 116
+ + ++C+ P ++ W R T GRI++ SL ++ +K +D
Sbjct: 109 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 168
Query: 117 FGNYMCQASNNLGSSQQFIQLS 138
G Y C+A++ +G Q+ + L
Sbjct: 169 SGRYDCEAASRIGGHQKSMYLD 190
Score = 62.5 bits (152), Expect = 3e-12
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
C +P + WFR+G I + + L VR+I ++D G Y+C+A+N
Sbjct: 22 MTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATN 79
Query: 127 NLGSSQQFIQLS 138
G ++ L
Sbjct: 80 KAGEDEKQAFLQ 91
Score = 35.6 bits (82), Expect = 0.008
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
E++ + SL + V L +G Y C A++ IG K+ +++
Sbjct: 149 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDI 191
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 97.5 bits (243), Expect = 2e-25
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 1/126 (0%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L + ++ AG+Y+C A++ G++ ++ + AE++C
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 118
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
V ++P V W +T + + ++L + +I +D G Y C+
Sbjct: 119 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGE 177
Query: 132 QQFIQL 137
F +
Sbjct: 178 IDFRDI 183
Score = 64.0 bits (156), Expect = 7e-13
Identities = 15/84 (17%), Positives = 30/84 (35%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
+V++ + + C P + + G I R+ + + L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
+ + D G Y CQA++ G +Q
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQ 85
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 97.2 bits (242), Expect = 4e-25
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + + AG+Y+C+ + G + V + A I+C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 132 QQFIQLS 138
F +
Sbjct: 182 INFKDIQ 188
Score = 53.3 bits (128), Expect = 5e-09
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFR-DGTAITLG-GRIDM-HVSSEK 104
+V + + +C V + K + WF +G ++ RI + +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+L + + D G Y C + G+
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQS 89
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 99.2 bits (247), Expect = 6e-25
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
+ +L + + K AG+Y+ I ++ G+ S+ + E+ +E
Sbjct: 54 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALS 112
Query: 64 DMRAEIIC----------NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
+I Y KV W +G+AI R+ V+ E+ L +
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 172
Query: 114 DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGP 155
D G Y+ + + Q+ + LSG + + R
Sbjct: 173 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQA 214
Score = 91.5 bits (227), Expect = 5e-22
Identities = 20/151 (13%), Positives = 41/151 (27%), Gaps = 21/151 (13%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTS--------------------KNFIVNVIY 48
+ L ++ T G Y + + I
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSL 107
+ + + CNV+ +PP +V W ++ A+ ++ + +
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYF 281
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ + D G Y N GS +S
Sbjct: 282 TINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 64.9 bits (158), Expect = 2e-12
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 4/122 (3%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSS 102
++ P W + + C V + W++D I++ + D
Sbjct: 2 IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KD 58
Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVW 162
+LL+ D G Y ++ G + ++L + + +++ L
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 163 QV 164
Q
Sbjct: 119 QS 120
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 100 bits (250), Expect = 9e-25
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + VT +G Y C+ + + S + + V+ PP ++ M E C
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPPWFLNHPSNLYAYESMDIEFEC 334
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
V P V W ++G + + +L + + +D G Y C A N G++
Sbjct: 335 AVSGKPVPTVNWMKNGDVVIPSDYFQI---VGGSNLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 132 QQFIQLS 138
Q QL
Sbjct: 392 QSSAQLI 398
Score = 93.4 bits (232), Expect = 3e-22
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD------M 65
+L + R+ +G+Y+C A N T V ++ P + + ++ +
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
A + C V PP W R I L + + +LL+ ++ D D G Y C +
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKK--YSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 126 NNLGSSQQFIQLS 138
+ +L+
Sbjct: 296 YKNENISASAELT 308
Score = 82.2 bits (203), Expect = 2e-18
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 1/122 (0%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
++ R GLYQC AS G S+ V V P + + I +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C V +P + W ++ + V +L + ++ D G Y C A N +
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 131 SQ 132
Sbjct: 203 RT 204
Score = 59.9 bits (145), Expect = 1e-10
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 30 ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGT 88
+ + S+ + E T + C+ ++ ++W +DG
Sbjct: 3 WGSELE-SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 89 AITLGGRIDMHVSSEKHSLLVRHI-----KDTDFGNYMCQASNNLGSSQQ----FIQLSG 139
+ LG SLL+++I D G Y C+AS S + ++G
Sbjct: 62 ILALGMDDRKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
Query: 140 IPNIPVFQKS 149
+S
Sbjct: 121 PLRFLSQTES 130
Score = 34.8 bits (80), Expect = 0.017
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49
+ +L + V G YQC+A N G + + + V P
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAG-NAQSSAQLIVPKP 402
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 98.3 bits (245), Expect = 1e-24
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVS-VEKQWIHTAPD-MRAE 68
+L + + G+Y+C GE ++ IV V PP +S +K + TA
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
C +P + WFR+G I + + L VR+I ++D G Y+C+A+N
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKA 271
Query: 129 GSSQQFIQLS 138
G ++ L
Sbjct: 272 GEDEKQAFLQ 281
Score = 89.1 bits (221), Expect = 3e-21
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L + ++ AG+Y+C A++ G++ ++ + AE++C
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
V ++P V W +T + + ++L + +I +D G Y C+
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGE 179
Query: 132 QQF 134
F
Sbjct: 180 IDF 182
Score = 59.8 bits (145), Expect = 7e-11
Identities = 15/84 (17%), Positives = 30/84 (35%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
+V++ + + C P + + G I R+ + + L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
+ + D G Y CQA++ G +Q
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQ 87
Score = 39.4 bits (92), Expect = 5e-04
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
L + L + + G Y C A+N GE + V
Sbjct: 241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQHH 287
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 96.2 bits (239), Expect = 2e-24
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 70
+ VT K G Y C+ S G++ + I + V+ PP RA +
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125
Query: 71 CNVY-ANPPAKVEWFRDGTAITLGGRID--------MHVSSEKHSLLVRHIKDTDFGNYM 121
C+ + +PP++ WF+DG ++ + + L+ + D G Y
Sbjct: 126 CSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYY 185
Query: 122 CQASNNLGSSQQFIQL 137
CQA N G++ +
Sbjct: 186 CQAQNGYGTAMRSEAA 201
Score = 46.1 bits (109), Expect = 2e-06
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 14/126 (11%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKH--- 105
V + + + ++ C +VEW G+ L +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 106 ----SLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGI--PNIPVFQKSSRRLGPDG 157
+ + D G Y C S G + I L+ + P+ P S G
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSV--TIG 119
Query: 158 YRLVWQ 163
R V
Sbjct: 120 NRAVLT 125
Score = 35.7 bits (82), Expect = 0.008
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
L D VT +G Y C A N G + V
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 94.8 bits (236), Expect = 3e-24
Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAE 68
+L + + G+Y CIA+N +GE + + + + P+ K+ + A
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNN 127
+ P + WF + I + + L+++++ + T G Y Q SN
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 128 LGSSQQFIQLS 138
G+ + +
Sbjct: 183 FGTVDAILDVE 193
Score = 65.5 bits (160), Expect = 3e-13
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
P + E + + T A++ C + P ++W+R G + + M H+L
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQ 132
V + D G Y C A+N +G +
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVE 90
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 94.8 bits (236), Expect = 4e-24
Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 7/133 (5%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWIHTAPDMR 66
L + VT A +YQ A+N G S + V P ++ + K +H
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQAS 125
I P + W + I G + V+ SL+ ++ D G Y+ A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 126 NNLGSSQQFIQLS 138
N G Q+ ++L
Sbjct: 182 NRFGIDQKTVELD 194
Score = 56.3 bits (136), Expect = 6e-10
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KH 105
P E + ++ A ++C V +P V+W+R G I G + H
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L++ + D D Y +A+N GS L
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
Score = 32.0 bits (73), Expect = 0.11
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTS 39
+ + V K AG Y A N G
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 189
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 98.9 bits (246), Expect = 8e-24
Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 16/199 (8%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTA 62
++L + +L L VT G Y+C N + S I+NV+Y P + ++ + +
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
P + + C+ +NPPA+ W DG L + +I + + G Y C
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTC 443
Query: 123 QASNNLGSSQQ--FIQLSGIPNIPVFQKSSRRLGP--DGYRLVWQVDTYSGIIQYLLKFR 178
QA+N+ + ++ +P SS P D + + + + YL
Sbjct: 444 QANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVN 503
Query: 179 EREELTPWRNIVIPSDGSL 197
+ R + + +L
Sbjct: 504 GQSLPVSPRLQLSNGNRTL 522
Score = 93.1 bits (231), Expect = 7e-22
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 12/136 (8%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTA 62
++L +L L VT A Y C N++ + S ++V+Y P+ +
Sbjct: 513 LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL 572
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ C+ +NP + W +G L + I + G Y C
Sbjct: 573 SGANLNLSCHSASNPSPQYSWRINGIPQQHTQ-----------VLFIAKITPNNNGTYAC 621
Query: 123 QASNNLGSSQQFIQLS 138
SN I S
Sbjct: 622 FVSNLATGRNNSIVKS 637
Score = 92.3 bits (229), Expect = 1e-21
Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 16/199 (8%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA- 62
++L +L L VT Y+C N + S + I+NV+Y P+ +
Sbjct: 157 LQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYR 216
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ C+ +NPPA+ WF +GT L + +I + G+Y C
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTC 265
Query: 123 QASNNLGSSQQ----FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFR 178
QA N+ + I + P P ++ D + + YL
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVN 325
Query: 179 EREELTPWRNIVIPSDGSL 197
+ R + + +L
Sbjct: 326 NQSLPVSPRLQLSNDNRTL 344
Score = 79.2 bits (195), Expect = 3e-17
Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 8/151 (5%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEVSVEKQWIHTA 62
E++Y SL + + G Y + E + F V P
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVE 124
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
C W+ + ++ + R + +S+ +L + ++ D +Y C
Sbjct: 125 DKDAVAFTCEPETQDA-TYLWWVNNQSLPVSPR--LQLSNGNRTLTLFNVTRNDTASYKC 181
Query: 123 QASNNLGSSQQ---FIQLSGIPNIPVFQKSS 150
+ N + + + + + P+ P +
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLN 212
Score = 43.4 bits (102), Expect = 4e-05
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 17/117 (14%)
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH----- 105
++++E + A ++ + W++ I + +++
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 106 -----------SLLVRHIKDTDFGNYMCQASNNL-GSSQQFIQLSGIPNIPVFQKSS 150
SLL+++I D G Y + + + Q P +P SS
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 95.0 bits (236), Expect = 2e-23
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 7/136 (5%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 64
+ R + YQC A + S + + V PP +++ +
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG 201
Query: 65 MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYM 121
A+I+C+ + V + T + + + D H + + +L + + GNY
Sbjct: 202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYS 261
Query: 122 CQASNNLGSSQQFIQL 137
C ASN G +
Sbjct: 262 CVASNVQGKHSTSMFF 277
Score = 70.0 bits (171), Expect = 2e-14
Identities = 25/145 (17%), Positives = 37/145 (25%), Gaps = 11/145 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 70
L + T + G Y+C + S + V P Q + D A +
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPL-GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110
Query: 71 CNVYA-NPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
C + A V R G + S H + K +Y C A
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTNY---SFSPWHGFTIHRAKFIQSQDYQCSALMGG 167
Query: 129 GSSQ----QFIQLSGIPNIPVFQKS 149
+ IP P
Sbjct: 168 RKVMSISIRLKVQKVIPGPPALTLV 192
Score = 42.3 bits (99), Expect = 7e-05
Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 9/91 (9%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
P + + P + C VEW ++ L
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGP-----PSPHWTLYSDGSSSIL 53
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ + G Y C + I L
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 91.1 bits (226), Expect = 7e-23
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+++ + +G Y C+ + + N + V P+++ K+ + A + C
Sbjct: 57 EYRINKPRAEDSGEYHCVY--HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYC 114
Query: 72 NVYANPPAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQAS 125
P + W + + GR + L + +++ T D G Y C A+
Sbjct: 115 KSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174
Query: 126 NNLGSSQQFIQLS 138
N++GS+ L
Sbjct: 175 NSIGSASVSTVLR 187
Score = 52.9 bits (127), Expect = 8e-09
Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHS 106
P + ++ I + + CN+ ++ + W ++G +T + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN-----ME 57
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ + D G Y C + + + + +
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIE 88
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 96.2 bits (239), Expect = 7e-23
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHT 61
+ ++ L ++ V + G+YQC N+ + + + + + PP + Q
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEA-SAELKLGGRFDPPVIRQAFQEETM 441
Query: 62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-----SSEKHSLLVRHIKDTD 116
P + C NP ++ W DG I R + L + + D
Sbjct: 442 EPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501
Query: 117 FGNYMCQASNNLGSSQQFIQLS 138
G Y C A + +G ++ +L+
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLN 523
Score = 94.2 bits (234), Expect = 3e-22
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 4/130 (3%)
Query: 12 SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEI 69
+L ++ V Y C+A N G S + V V+ P + + +
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 70 ICNVYANP-PAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
C+V P ++W DG AI+ I V L + ++ + GN+ C A N
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNL 699
Query: 128 LGSSQQFIQL 137
G Q L
Sbjct: 700 AGHQQFTTPL 709
Score = 89.2 bits (221), Expect = 1e-20
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + ++ +G Y C+ +N++G + + ++ V P ++ A C
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 365
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V W +DG AI + L + +K D G Y C N+ S+
Sbjct: 366 QYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 132 QQFIQL--SGIPNIPVFQKS 149
+ +L G + PV +++
Sbjct: 416 EASAELKLGGRFDPPVIRQA 435
Score = 88.8 bits (220), Expect = 2e-20
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L ++ V AG + C A N G +NV PP +E A A++ C
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVEC 736
Query: 72 NVYANPPAKVEWFRDGTAITLGGRI---DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
P +V W + + ++ E+ +L V +I+ T+ G Y+C+A N +
Sbjct: 737 KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGI 796
Query: 129 GSS 131
GS
Sbjct: 797 GSG 799
Score = 81.5 bits (201), Expect = 7e-18
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)
Query: 16 DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-- 73
D A +Y C+A N G S++ V + + H A I C +
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 164
Query: 74 -YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNYMCQASNNLG 129
A+ V W D G ++ L +R + D + +Y C+ + L
Sbjct: 165 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 224
Query: 130 SSQQFIQ 136
+
Sbjct: 225 GETRLSA 231
Score = 76.9 bits (189), Expect = 3e-16
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVI---------YPPEVSVEKQWIHTAPDM-RAEIICN 72
YQC + + T + + P VS+ K + T ++C
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271
Query: 73 VYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
P W++ T + + V +L+++ D G Y+C +N++G
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 131 SQQFIQLS 138
L+
Sbjct: 332 ESVETVLT 339
Score = 71.5 bits (175), Expect = 2e-14
Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 11/150 (7%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEII 70
+++ LK L+ +A G T + N P E I + AEI
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 71 CNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF------GNYMCQ 123
C NP ++ W R DGTA+ + S L+ + D+ Y C
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGL--RQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 153
A N GS ++ +
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Score = 41.5 bits (97), Expect = 2e-04
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
+L +D + G Y C A N IG S +++V
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 94.6 bits (235), Expect = 9e-23
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + V+ + +G Y C+ASN +G S V V P E + + AP ++C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVC 334
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V+W +G + + + +++ R + + Y C SN G
Sbjct: 335 RANGNPKPTVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393
Query: 132 QQFIQLS 138
+S
Sbjct: 394 LANAFVS 400
Score = 71.8 bits (176), Expect = 9e-15
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 10/140 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYA-NPPAK 80
G YQC A N G + S + V P E + + CN P
Sbjct: 89 EGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPV 148
Query: 81 VEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTD-FGNYMCQASNNLGSSQQ---FI 135
+ W IT R+ L ++ D +Y C A + + Q
Sbjct: 149 IFWMSSSMEPITQDKRV---SQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205
Query: 136 QLSGIPNIPVFQKSSRRLGP 155
L + V +++ + P
Sbjct: 206 TLKVLTTRGVAERTPSFMYP 225
Score = 71.8 bits (176), Expect = 1e-14
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 15/128 (11%)
Query: 23 AGLYQCIASNNIGEST--SKNFIVNVIYPPEVSVEK----------QWIHTAPDMRAEII 70
Y C A + + F + V+ V+ M +
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C P + W++ G + + +L + ++ + D G Y C ASN +GS
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 131 SQQFIQLS 138
+ I +
Sbjct: 301 IRHTISVR 308
Score = 61.8 bits (150), Expect = 2e-11
Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 9/170 (5%)
Query: 37 STSKNFIVNVIYPPEVSVEKQWIHTA-PDMRAEIICNVYANPPAKVEWFRDGTAITLGGR 95
+ + PP ++ + H P I C NP W R+ +
Sbjct: 4 PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63
Query: 96 IDMHVSSEKHSLLVR----HIKDTDFGNYMCQASNNLGSSQQ---FIQLSGIPNIPVFQK 148
+ + +L++ + G Y C A N G++ +Q+S P P
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123
Query: 149 SSRRLGP-DGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
+ L E +T + + +G L
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL 173
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 93.8 bits (233), Expect = 2e-22
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L + V + G Y+C A N G T + + + P+ C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSC 316
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
P V W RDG + RI++ L + D G Y C A N G+
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTV 372
Query: 132 QQFIQLS 138
+L+
Sbjct: 373 YASAELT 379
Score = 78.7 bits (194), Expect = 3e-17
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYA-NPPAK 80
AG YQC+A+N G S+ + + E S E++ + C+ P
Sbjct: 74 AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 140
W + + VS +L + + +D GNY C A++++ + +
Sbjct: 134 YRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFS 193
Query: 141 PNIPVFQKSSRRLGP 155
+ + + +R+ P
Sbjct: 194 Q-LSLAAEDARQYAP 207
Score = 72.2 bits (177), Expect = 7e-15
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 17/138 (12%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNVIYPPEVSVEKQWIHTAP---- 63
+L + + G Y C A+++I T SK +++ P
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 64 ---DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
+ C + NP +++W + G S + L ++++ D G Y
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTY 272
Query: 121 MCQASNNLGSSQQFIQLS 138
C+A N G ++
Sbjct: 273 ECEAENIKGRDTYQGRII 290
Score = 56.4 bits (136), Expect = 1e-09
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 48 YPPEVSVEKQ---WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
Y P + + + + + + C ANPPA W +GT + +G D
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVA 60
Query: 105 HSLLV-RHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPV 145
L++ +K D G+Y C A+N G S + ++ +
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSA 105
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 93.7 bits (233), Expect = 2e-22
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L++ + AG Y+C+A N+ G + P IH A + C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRG-KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 317
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
P W ++G + RI + E+ +L + + +D G Y C A N G
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHGVI 373
Query: 132 QQFIQLS 138
+LS
Sbjct: 374 FSSAELS 380
Score = 79.1 bits (195), Expect = 2e-17
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNV-YANPPAK 80
AG YQCIA+N+ G S+ + Y + + ++C +
Sbjct: 75 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELS 134
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
W + R VS E +L + ++ +D GNY C +N + + +
Sbjct: 135 YAWIFNEYPSYQDNRR--FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186
Score = 72.2 bits (177), Expect = 6e-15
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 15/138 (10%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVI-------YPPEVSVEK-QWIHT 61
+L + +V G Y C+ +N + + + Y P++ V+ + +
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 62 APDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
++ C NP + W R DG I R L + + + D G+Y
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAGSY 273
Query: 121 MCQASNNLGSSQQFIQLS 138
C A N+ G + QL+
Sbjct: 274 ECVAENSRGKNVAKGQLT 291
Score = 58.3 bits (141), Expect = 4e-10
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P V + + + ++ C V NP + W +GT + +G D S SLL
Sbjct: 12 PSHVMF----PLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM--DFRYSVVDGSLL 65
Query: 109 VRHI-KDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP-DGYRLVWQ 163
+ + K D G Y C A+N+ G S + +Q + + N +S+ + G L+
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG 125
Query: 164 VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
+SG + Y F E R V G+L
Sbjct: 126 PPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNL 159
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 90.6 bits (225), Expect = 2e-22
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAK 80
G+Y C+A N +GE+ S + + V + + A A + C +P
Sbjct: 84 EGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT 143
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ W +DG+ + ++ L++ + + +D G Y+C +N +G +
Sbjct: 144 ISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERE 192
Score = 47.9 bits (114), Expect = 6e-07
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSSEKH 105
+PP + + + A + C P +EW++ G + +
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 106 SLLVRHI-----KDTDFGNYMCQASNNLGSS 131
SL I D G Y+C A N LG +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 38.3 bits (89), Expect = 0.001
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
L + AG Y C+ +N +GE S+ + V+ P
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 93.4 bits (232), Expect = 2e-22
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEII 70
L + G+Y C N +G+ + + V+ P+ + + + I
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C V P V W + ++ GGR + L+++ +K+ D G Y C+A+N G
Sbjct: 331 CKVTGLPAPNVVWSHNAKPLS-GGRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGD 385
Query: 131 SQQFIQLS 138
+
Sbjct: 386 KYFETLVQ 393
Score = 80.0 bits (197), Expect = 1e-17
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 8/130 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
SL R G YQC A G ++S+ Y + ++ C
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 72 NV-YANPPAKVEWFRDGTAITLGGRIDMH----VSSEKHSLLVRHIKDTD---FGNYMCQ 123
+ A P + W + + + + +L + D Y+C
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 124 ASNNLGSSQQ 133
A N +
Sbjct: 183 AKNAAVDEEV 192
Score = 77.6 bits (191), Expect = 9e-17
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIY----------PPEVSVEKQWIHTAPDMRAEIICN 72
Y C A N + + P + + I C
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235
Query: 73 VYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
+NP +F++G + RI H + LL + D G Y C+ N +G
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Query: 131 SQ 132
Q
Sbjct: 296 PQ 297
Score = 60.3 bits (146), Expect = 7e-11
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSS 102
+ V P + + + + + C + N K W +DG + + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRK 59
Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 149
++ SL+ + +D G+Y C A G S + + + P
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHE 109
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 89.9 bits (223), Expect = 3e-22
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 75
Y+C+A N +G++ S + + + + I P + C
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 76 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
NP + W ++ T + + S + L + + ++ D G Y C A N++G+
Sbjct: 137 NPTPNIYWIKNQTKVDMSNP---RYSLKDGFLQIENSREEDQGKYECVAENSMGTEH 190
Score = 53.3 bits (128), Expect = 7e-09
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
+PPE+ + Q A C +PP + W ++G ++ V +
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPG 61
Query: 106 SLLVRHIKDT----DFGNYMCQASNNLGSSQQ 133
+ + I+ D Y C A N +G +
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVS 93
Score = 36.3 bits (84), Expect = 0.005
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
L ++ + G Y+C+A N++G SK + V
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 91.5 bits (227), Expect = 4e-22
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 7/140 (5%)
Query: 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHT 61
+ + + + Y C N ESTS + V PP++ +E +
Sbjct: 139 FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198
Query: 62 APDMRAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
A+I+C+ + G I L + + +L + + D G
Sbjct: 199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAG 258
Query: 119 NYMCQASNNLGSSQQFIQLS 138
Y C ASN++G+ +
Sbjct: 259 IYSCVASNDVGTRTATMNFQ 278
Score = 77.3 bits (190), Expect = 5e-17
Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 9/148 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 70
+L T K G Y+C + + S + V P Q + A +
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPM-AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP 110
Query: 71 CNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
C + V R+G L ++ S ++R K D Y+C+ N
Sbjct: 111 CLITDPALKDSVSLMREGGRQVLRKT--VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR 168
Query: 130 SSQ-QFIQL---SGIPNIPVFQKSSRRL 153
S I L P P + +L
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKL 196
Score = 40.7 bits (95), Expect = 2e-04
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P + + P + C VEW + + S +L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVS----NGSVEWDGPISP-----YWTLDPESPGSTLT 54
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
R+ + G Y C + + I L
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLY 84
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 88.7 bits (220), Expect = 4e-22
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 10/122 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L L V AG Y C + S+ + V P +VE + + P+ ++ C
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120
Query: 72 NVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
P P + W+R T I ++ T + C+A N G
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIG---------GPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171
Query: 131 SQ 132
+
Sbjct: 172 AS 173
Score = 56.7 bits (137), Expect = 3e-10
Identities = 13/86 (15%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HS 106
++ + + ++ C+V ++W +DG + ++ + VS +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQ 132
L ++ ++ +D G Y CQ + +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEI 87
Score = 36.7 bits (85), Expect = 0.002
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 15 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
L+ + + ++ C A N G ++S+ V++
Sbjct: 150 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 87.4 bits (216), Expect = 2e-21
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 12/134 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+ + G Y C+ + + + + PP V K H A ++C
Sbjct: 50 KTEFKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVC 105
Query: 72 NVYANPPA-KVEWFRDGTAI------TLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQ 123
+ PP W++ + R + S + L + ++ D G Y C
Sbjct: 106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
Query: 124 ASNNLGSSQQFIQL 137
+++ GS Q I L
Sbjct: 166 GTSSKGSDQAIITL 179
Score = 48.5 bits (115), Expect = 3e-07
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 66 RAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
+ + C++ + W + G + + + D +G Y C
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVDSDDQWGEYSCV 67
Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKS 149
+ IQL G P + + S
Sbjct: 68 FLPEPMGTAN-IQLHGPPRVKAVKSS 92
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 89.9 bits (222), Expect = 3e-21
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVE 82
Y C + G+ ++ PP E + T ++ C + YA +
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162
Query: 83 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142
W+++ + + G S +L++ + + D G Y C + + I +S
Sbjct: 163 WYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219
Query: 143 IPVFQKSSRR 152
+ V R
Sbjct: 220 LTVIPSQDHR 229
Score = 69.9 bits (170), Expect = 3e-14
Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 20/145 (13%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---------IHTA 62
+L + L+ +G Y C + + +V+ V + I+
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241
Query: 63 PDMRAEIICNVYANP----PAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIK 113
A I C + ++W I + + +L ++
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301
Query: 114 DTDFGN-YMCQASNNLGSSQQFIQL 137
+ GN Y C+ N +
Sbjct: 302 EEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 36.3 bits (83), Expect = 0.006
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN-YM 121
P + ++ + Y + V W + G R ++ + L + + D Y+
Sbjct: 52 PPIEDSLLSHRYNDKDNVVNWEKIGK-----TRRPLNRRVKNGDLWIANYTSNDSHRRYL 106
Query: 122 CQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLG-PDGYRLVWQVDTYSGIIQYLLK-FRE 179
C + G Q I S I P + LG D Y + + ++
Sbjct: 107 CTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKN 166
Query: 180 REELTPWRNIVIPSDGSL 197
+EL S +L
Sbjct: 167 NQELIIDGTKYSQSGQNL 184
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 86.9 bits (215), Expect = 4e-21
Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 24/139 (17%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-- 66
N L + V +K AG Y C +NN S+ ++V PE + ++
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 67 -------------AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
+ C +P +WF++ +T K +V ++
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVD 173
Query: 114 DTDFGNYMCQASNNLGSSQ 132
G Y C N+ S
Sbjct: 174 LEHQGTYWCHVYNDRDSQD 192
Score = 57.6 bits (139), Expect = 2e-10
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 34 IGESTSKNFIVNVIYP--PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT 91
+G S + + + P +++V + ++ C +P + +WF+ I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP 60
Query: 92 LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
+ L+ + D G Y+C+ +NN
Sbjct: 61 ---------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93
Score = 44.1 bits (104), Expect = 1e-05
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
++ + V L+ G Y C N+ SK + + +
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 86.8 bits (215), Expect = 5e-21
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICN-VYANPPAK 80
G Y C+A N +G++ S++ + + + VE + A A + C P
Sbjct: 81 GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140
Query: 81 VEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ W +DG + + SS + +LL+ +++ D GNY C A N +G+ +
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Score = 52.2 bits (125), Expect = 2e-08
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS----SEK 104
P + + + A + C V P +EWF+DG ++ + V +
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQK 148
++ K+ D G Y C A N +G S +Q++ + F+
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR--DDFRV 113
Score = 38.7 bits (90), Expect = 8e-04
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
+L + V G Y+CIA N +G S + V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 90.1 bits (223), Expect = 5e-21
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 21/148 (14%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L L R+ G Y + SN+ + + F V V P + + + + C
Sbjct: 376 ELHLTRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVNTKP------EILTYDRLVNGMLQC 428
Query: 72 NVYANPPAKVEWF-------RDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGN 119
P ++W+ R ++ ++ S + G
Sbjct: 429 VAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGT 488
Query: 120 YMCQASNNLGSSQQFIQLS--GIPNIPV 145
C+A N++G + + + G +
Sbjct: 489 VECKAYNDVGKTSAYFNFAFKGNNKEQI 516
Score = 87.0 bits (215), Expect = 8e-20
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---IHTAPDMRAE 68
+L + + +G++ C A+N G S + + V+ +++ + +
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332
Query: 69 IICNVYANP-PAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+I A P P +W T + L + +K T+ G Y
Sbjct: 333 LIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF 392
Query: 123 QASNNLGSSQQFIQLS 138
SN+ ++ +
Sbjct: 393 LVSNSDVNAAIAFNVY 408
Score = 80.5 bits (198), Expect = 1e-17
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 12/136 (8%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYA-NP 77
C S+ FI+ V P VSV K + C + +
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Query: 78 PAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGNYMCQASNNLGSSQ 132
W R+ + L + + + + +L + + D G +MC A+N GS+
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 133 QFIQLS--GIPNIPVF 146
L I +F
Sbjct: 301 VTTTLEVVDKGFINIF 316
Score = 73.5 bits (180), Expect = 3e-15
Identities = 13/121 (10%), Positives = 32/121 (26%), Gaps = 5/121 (4%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
++ G Y C + + S V V P ++ + + ++ D + C
Sbjct: 81 EWITEKAEATNTGKYTCTNKHGLSNSIY----VFVRDPAKLFLVDRSLYGKEDNDTLVRC 136
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
+ +P + L + + ++ + C S
Sbjct: 137 PL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195
Query: 132 Q 132
Sbjct: 196 L 196
Score = 54.7 bits (131), Expect = 7e-09
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 23 AGLYQCI----ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 78
A + C+ G S PP + K + ++C P
Sbjct: 7 AWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD----P 61
Query: 79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
V+W + +D ++++ + + T+ G Y C + L +S
Sbjct: 62 GFVKWTFEI--------LDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS 106
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 89.8 bits (222), Expect = 8e-21
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 10/128 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEI 69
+ V G Y C +S + +S V ++ ++ +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQYEEFCF 346
Query: 70 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
A P + W + + +S+ G Y+ A N+
Sbjct: 347 SVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 130 SSQQFIQL 137
+ L
Sbjct: 403 QFTKMFTL 410
Score = 88.2 bits (218), Expect = 3e-20
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKV 81
+C A N +G ++ F +++ P+ ++ + + I C N +
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGL 260
Query: 82 EWFRDGTAITLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSS 131
W + A+ G +M S V + D G Y C +S + S
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 84.4 bits (208), Expect = 6e-19
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 20/147 (13%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
E + L N S+ G Y A N+ +K F +N+ P+V E
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVLAE------- 421
Query: 63 PDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHS----------LLVRH 111
++ C P W + + I V + K + +
Sbjct: 422 -ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480
Query: 112 IKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ C A N+LG+S + I L+
Sbjct: 481 SEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 77.0 bits (189), Expect = 2e-16
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 9/141 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
S+ + ++T AG Y + + + F V++ ++ + + + + ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG-- 129
+ P VEW + V ++ + + + + C A N LG
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE----KVLHELFGTDIRCCARNELGRE 217
Query: 130 -SSQQFIQLSGIPNIPVFQKS 149
+ I L+ P + Q
Sbjct: 218 CTRLFTIDLNQTPQTTLPQLF 238
Score = 66.6 bits (162), Expect = 6e-13
Identities = 18/186 (9%), Positives = 55/186 (29%), Gaps = 8/186 (4%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
+ Y ++ + + E + + V A
Sbjct: 27 SSSYPMVSESPEDLGCALR-----PQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81
Query: 83 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS-GIP 141
W +++ D+ + S+++ + +T G Y+ + + +S
Sbjct: 82 WVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Query: 142 NIPVFQKSSRRLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDGSLAGP 200
+ ++ R + LV ++ I++++L + E V+ + +
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200
Query: 201 IYTQSY 206
++
Sbjct: 201 LFGTDI 206
Score = 37.8 bits (87), Expect = 0.002
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIH 60
S L+ L +C A N++G ++ + ++N P K H
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPGPFPFIQDGGTKHHHH 525
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 85.0 bits (210), Expect = 1e-20
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L + + L G YQC+ S+ V + P E + A + + C
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128
Query: 72 NVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
P P + W +D + + SL V + T ++ C+A N G
Sbjct: 129 QAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLNKT--SSFSCEAHNAKGV 181
Query: 131 SQ 132
+
Sbjct: 182 TT 183
Score = 50.3 bits (120), Expect = 7e-08
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-- 105
I A + + C + P +V W RDG + L V +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 106 -------SLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNI 143
L + ++ +D G Y C S ++ L G+P
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF 109
Score = 39.5 bits (92), Expect = 3e-04
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPE 51
+ C A N G +TS+ + V+ P +
Sbjct: 168 TSSFSCEAHNAKGVTTSRTATITVL-PQQ 195
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 87.5 bits (216), Expect = 2e-20
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANPPA-K 80
CI + ++ ++ +NV Y PEV++E + M ++ C ANPPA +
Sbjct: 206 QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATE 264
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
W ++ G + + I + G Y+C+A+N +G+ ++++
Sbjct: 265 YHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Score = 68.6 bits (167), Expect = 9e-14
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 8/135 (5%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE--- 68
++ L R+ L+ G+Y C + + + V+ P +E +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 69 --IICNV-YANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
C PP+ V W R + + ++ + C
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212
Query: 124 ASNNLGSSQQFIQLS 138
+ ++ ++ + L+
Sbjct: 213 VNYHMDRFKESLTLN 227
Score = 45.5 bits (107), Expect = 5e-06
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
NR + LAG Y C A+N IG + S VN+ +
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAALEHHHH 329
Score = 39.7 bits (92), Expect = 5e-04
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 31/146 (21%)
Query: 29 IASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP----AKVEWF 84
+AS G+ ++ V + + C+ P +V W
Sbjct: 1 MASMTGGQQMGRDPSQVVQVNDSMYGFI-------GTDVVLHCSFANPLPSVKITQVTWQ 53
Query: 85 RDGTAI---------TLGGRID---------MHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
+ ++G + + S ++ + ++ D G Y+C+ +
Sbjct: 54 KSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT 113
Query: 127 N-LGSSQQFIQLSGIPNIPVFQKSSR 151
G+ + + L+ + P
Sbjct: 114 FPTGNRESQLNLT-VMAKPTNWIEGT 138
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 84.9 bits (210), Expect = 3e-20
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMR------AEIICNVYA 75
+Y+C+ASNN+GE S + + V+ ++ I P A ++C
Sbjct: 76 EAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG 134
Query: 76 NPPAKVEWFRDGTAITL---GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
NP ++ WF+D + GRI S +L + +++D G Y C A+N+ G+
Sbjct: 135 NPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY 194
Score = 56.0 bits (135), Expect = 9e-10
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EK 104
PP + A IC +P K+ W + G ++ +
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 105 HSLLVRHIKD-TDFGNYMCQASNNLGSSQQFIQLS------GIPNIPVFQK 148
L ++ ++ D Y C ASNN+G +L+ P
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM 113
Score = 40.2 bits (94), Expect = 2e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
+L +++ G Y+C+A+N+ G S + V
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 86.3 bits (213), Expect = 3e-20
Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 7/118 (5%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 80
Y C + E S + V + VSV ++C V N
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN 212
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
EW + L + + D G Y C + ++ Q
Sbjct: 213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270
Score = 65.9 bits (160), Expect = 7e-13
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 19/159 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------EVSVEKQWIHTAPDM 65
L L +T G Y C +++ G T + + + P E+ +I
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
I C V +P V + L D + +Y+C+ +
Sbjct: 112 EITIPCRV-TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF---------EDRSYICKTT 161
Query: 126 NNLG---SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 161
S ++ + +I V + + + G +
Sbjct: 162 IGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Score = 36.6 bits (84), Expect = 0.005
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 10 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSV 54
R L + L+ +G Y C + ++ + K + V+
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHH 286
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 87.3 bits (216), Expect = 3e-20
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + ++ +G Y C+ +N++G S ++ V P ++ A C
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
NP V W +DG AI L + +K D G Y C N+ S+
Sbjct: 330 QYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESA 379
Query: 132 QQFIQLS 138
+ +L
Sbjct: 380 EASAELK 386
Score = 75.7 bits (186), Expect = 4e-16
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 11/126 (8%)
Query: 24 GLYQCIASNNIGEST--SKNFIVNVIYPPEVSVE-------KQWIHTAPDMRAEIICNVY 74
YQC + + T S VI P S ++ + ++C
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 75 ANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
P W++ T + + V +L+++ D G Y+C +N++G
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 133 QFIQLS 138
L+
Sbjct: 298 VETVLT 303
Score = 70.7 bits (173), Expect = 2e-14
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 16 DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-- 73
D A +Y C+A N G S++ V + + H A I C +
Sbjct: 70 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129
Query: 74 -YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNYMCQASNNLG 129
A+ V W D G ++ L +R + D + +Y C+ + L
Sbjct: 130 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 189
Query: 130 SSQQF 134
+
Sbjct: 190 GETRL 194
Score = 46.5 bits (110), Expect = 3e-06
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 13/112 (11%)
Query: 49 PPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHS 106
P E I + AEI C NP ++ W R DGTA+ + S
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GK 60
Query: 107 LLVRHIKDTDF------GNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 149
L+ + D+ Y C A N G S ++
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK 112
Score = 33.8 bits (77), Expect = 0.044
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSK 40
+ L ++ V + G+YQC N+ + +
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESAEAS 382
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 86.0 bits (213), Expect = 5e-20
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 11/139 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK--NFIVNVIY-PPEVSVEKQWIHTAPDMRAE 68
+L ++ G Y+C+A+N+ G S N V V P S+ P
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN 224
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
I C +P V+W + +T + + ++ D NY C A ++L
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSL 278
Query: 129 GSSQQFIQLS--GIPNIPV 145
G + Q++ +P
Sbjct: 279 GVIEAVAQITVKSLPKAGT 297
Score = 79.1 bits (195), Expect = 1e-17
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 75
+Y+C+A N++GE T + + V+ ++ I P A ++C
Sbjct: 76 ENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134
Query: 76 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQ 132
NP ++ WF+D + +L + ++TD G Y C A+N+ G SS
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP 194
Query: 133 QFIQLSGIPNIPVFQK 148
+ + P F
Sbjct: 195 ANLYVRVQNVAPRFSI 210
Score = 58.3 bits (141), Expect = 3e-10
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
PP E + A +C +P +V W + G + +
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 106 SLLVRHIKDT----DFGNYMCQASNNLGSSQQFIQLS 138
++L I+ D Y C A N++G +L+
Sbjct: 63 AVL--RIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Score = 35.2 bits (81), Expect = 0.015
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 55
L+ +K + Y C+A +++G + + V P+ +
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAV-AQITVKSLPKAGTK 298
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 87.0 bits (215), Expect = 6e-20
Identities = 16/134 (11%), Positives = 34/134 (25%), Gaps = 10/134 (7%)
Query: 6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAP 63
+ + V G Y C +S + +S V ++ ++ +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQ 340
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
A P + W + + +S+ G Y+
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 124 ASNNLGSSQQFIQL 137
A N+ + L
Sbjct: 397 AENDDAQFTKMFTL 410
Score = 84.3 bits (208), Expect = 5e-19
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 26 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWF 84
+C A N +G ++ F +++ P+ ++ + + I C N + W
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWE 263
Query: 85 RDGTAITLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
+ A+ G +M S V + D G Y C +S + S
Sbjct: 264 LENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318
Score = 74.7 bits (183), Expect = 1e-15
Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
S+ + ++T AG Y + T F V++ ++ + + + + ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
+ P VEW + V ++ + + + + C A N LG
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGTDIRCCARNELGRE 217
Query: 132 QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLK-FREREELTPWRNIV 190
+ + P L G L + + L E + L
Sbjct: 218 CTRLFTIDLNQTPQTTLPQLFLKV-GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE 276
Query: 191 IPSDGSLAGPIYTQSYNITGLQL 213
+ + + I ++ +
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVAR 299
Score = 69.3 bits (169), Expect = 7e-14
Identities = 20/187 (10%), Positives = 57/187 (30%), Gaps = 10/187 (5%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
+ Y ++ + + E + + V A
Sbjct: 27 SSSYPMVSESPEDLGCALR-----PQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81
Query: 83 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142
W +++ D+ S+++ + +T G Y+ + + +S I N
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVS-IRN 139
Query: 143 IPVF--QKSSRRLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDGSLAG 199
++ ++ R + LV ++ I++++L + E V+ + +
Sbjct: 140 TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199
Query: 200 PIYTQSY 206
++
Sbjct: 200 ELFGTDI 206
Score = 42.4 bits (99), Expect = 6e-05
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
E + L N S+ G Y A N+ + +K F +N+ +
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRSGTK 417
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 85.4 bits (211), Expect = 9e-20
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------PP 50
E+E N+ + + + G+Y C ++ G ++S +
Sbjct: 50 EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLL 108
V E + + AKV + + I G + MH+ +
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 169
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS 150
+ ++D D G Y Q + ++ + L G + +++
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 211
Score = 81.2 bits (200), Expect = 2e-18
Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 22/146 (15%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS------------------ 53
+ ++++ + G Y + + S ++ ++
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 54 VEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI 112
VE + + C V + W++D I++ + D +LL+
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 283
Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLS 138
D G Y ++ G + ++L
Sbjct: 284 SKKDAGIYEVILKDDRGKDKSRLKLV 309
Score = 63.5 bits (154), Expect = 5e-12
Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P + + C+ P ++ W +D + R+++ K +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
+ + D G Y C ++ G + ++ +
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLL 98
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 83.0 bits (205), Expect = 1e-19
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 13/136 (9%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVI--------YPPEVSVEKQWIHTA 62
+L + V G Y C S+ S FI + YP ++ V+ + ++
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ C NP + W + + I S+ L + +I+ D G Y C
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI----STSGAVLKIFNIQLEDEGIYEC 182
Query: 123 QASNNLGSSQQFIQLS 138
+A N G + ++
Sbjct: 183 EAENIRGKDKHQARIY 198
Score = 52.6 bits (126), Expect = 1e-08
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 67 AEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
++C+ + P W + + + VS +L + +++ +D GNY C
Sbjct: 26 MVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV 85
Query: 125 SNNLGSSQQFIQLSGIPNIPVFQ 147
S+ + F + + IP
Sbjct: 86 SSPSITKSVFSKFIPLIPIPERT 108
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 81.8 bits (202), Expect = 4e-19
Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 23/152 (15%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-- 66
+ L ++ T G Y + ++ E E Q + A
Sbjct: 57 EQIWLQINEPTPNDKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQAAIAEKN 115
Query: 67 -------------------AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HS 106
+ CNV+ +PP +V W ++ A+ ++ + +
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ + D G Y N GS +S
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 70.7 bits (173), Expect = 5e-15
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 67 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
++ V Y KV W +G+AI R+ V+ E+ L + D G Y+ +
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 126 NNLGSSQQFIQLSGIPNIPVFQKSSRR 152
+ Q+ + LSG + + R
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRL 106
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 82.9 bits (204), Expect = 5e-19
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 64
+ +C A + S F + V P VSV +
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203
Query: 65 MRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE-------KHSLLVRHIKDTD 116
++C + + W + ++ + + +L + + D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Query: 117 FGNYMCQASNNLGSSQQFIQL 137
G +MC A+N GS+ L
Sbjct: 264 SGVFMCYANNTFGSANVTTTL 284
Score = 73.2 bits (179), Expect = 1e-15
Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 12/159 (7%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
+ ++ G Y C SN + S V V P ++ + + D A
Sbjct: 55 KKNEWIQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDAL 110
Query: 69 IICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
+ C + ++ DG ++ + + + + C A +
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 128 LG---SSQQFIQLSGIPNIP--VFQKSSRRLGPDGYRLV 161
S + +++ V + L G
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207
Score = 40.9 bits (95), Expect = 2e-04
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
PP + + + + C P V W + V ++K+ +
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKT-------YFNEMVENKKNEWI 60
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIP 144
+ T G Y C SN L SS F++ +
Sbjct: 61 QEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLV 97
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 82.8 bits (204), Expect = 6e-19
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 4/126 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
SL + + ++ G Y C+ S S + + V+ P+ + E Q + + C
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 139
Query: 72 NV-YANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASNN 127
PPA++ W D + ++ +S + ++ D N C+ +
Sbjct: 140 VSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHE 199
Query: 128 LGSSQQ 133
Q
Sbjct: 200 SFEKPQ 205
Score = 82.8 bits (204), Expect = 7e-19
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 9/119 (7%)
Query: 23 AGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANP-PA 79
C + E + V YPPEVS+ + A + C+ +NP P
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
W G + ++ LL+R + +C +N LG+ Q + +
Sbjct: 249 GYNWSTTM------GPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 41.2 bits (96), Expect = 2e-04
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 33/129 (25%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-----AKVEWFRDGTAITLG----- 93
V V P +V + C + +++ W R G + ++
Sbjct: 2 VVVQAPTQVPGFL-------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54
Query: 94 -------------GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSG 139
+ SL + ++ D GNY C GS I L
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Query: 140 I--PNIPVF 146
+ P
Sbjct: 115 LAKPQNTAE 123
Score = 36.6 bits (84), Expect = 0.005
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
L + V + C +N +G + V V
Sbjct: 269 QLLIRPVDKPINTTLICNVTNALG-ARQAELTVQV 302
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 81.3 bits (200), Expect = 6e-19
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 4/128 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
S+++ + L G YQC G +K F++ V+ P + ++ C
Sbjct: 85 SINVTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKC 143
Query: 72 NVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
+ P + EW + + T+ + V++ G Y C N +GS
Sbjct: 144 EPKEGSLPLQFEWQKLSDSQTMPTP--WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS 201
Query: 131 SQQFIQLS 138
Q ++L
Sbjct: 202 DQCMLRLD 209
Score = 40.4 bits (94), Expect = 2e-04
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 30/130 (23%)
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANP----PAKVEWFRDGTAIT--------------- 91
++ +Q I A A + C +P P +EW +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 92 ------LGGRI---DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GI 140
L GR+ V S S+ V +++ +D G Y C+ G + + L+
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 141 PNIPVFQKSS 150
P+
Sbjct: 122 PSGTRCFVDG 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 83.6 bits (206), Expect = 6e-19
Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 13/134 (9%)
Query: 12 SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
L L VT L C A N++G + + VNV +P Q I
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFPAS----VQLHTAVEMHHWCIP 267
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-------HSLLVRHIKDTDFGNYMCQ 123
+V P + W +G+ + I L + + GNY
Sbjct: 268 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327
Query: 124 ASNNLGSSQQFIQL 137
A+N G + I
Sbjct: 328 AANPFGQASASIMA 341
Score = 47.8 bits (113), Expect = 1e-06
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
P + V+ + C V + W + + S L
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL-GLTLA 217
Query: 110 RHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD 165
D + N C A N++G ++ +Q+ + P + + + + + VD
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQV--NVSFPASVQLHTAVEMHHWCIPFSVD 271
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 79.9 bits (197), Expect = 2e-18
Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEK 56
++ SL ++ V G Y C+ N G S + + ++V+ P +
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLP 125
Query: 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-----------MHVSSEKH 105
T E +C VY++ ++W + D SS
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQK 148
L + ++ + D G Y+C+ SN +G + Q L+ P +K
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 65.7 bits (160), Expect = 3e-13
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 29 IASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT 88
+A + + E+++ ++ EK+ + C NP + W ++G
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 58
Query: 89 AITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
RI V ++ SL++ + +D GNY C N GS L
Sbjct: 59 EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 77.8 bits (191), Expect = 9e-18
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 5/128 (3%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
N L + + G Y C E T + ++V+ P +SV +
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLT 123
Query: 69 IICNVYANPPAKVEWFRDGTAITL----GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
+ C V A P V+W G + + + C
Sbjct: 124 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 125 SNNLGSSQ 132
N+ +
Sbjct: 184 KNDKEEAH 191
Score = 53.1 bits (127), Expect = 8e-09
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 17/86 (19%)
Query: 70 ICNVYANPPAKVEWFRDGTAIT-----------------LGGRIDMHVSSEKHSLLVRHI 112
V P +V WF+ G G D+H S+ L+V
Sbjct: 15 WRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 74
Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLS 138
+ GNY+C+ + LS
Sbjct: 75 NISHDGNYLCRMKLGETEVTKQEHLS 100
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 78.4 bits (193), Expect = 1e-17
Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 18/154 (11%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEK 56
I+L + + SL ++ V G Y C+ N G + + ++V+ P +
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLP 121
Query: 57 QWIHTAPDMRAEIICNVYANPPAKVEWFR-----------DGTAITLGGRIDMHVSSEK- 104
E C VY++ ++W + DGT + + S E
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L + ++ + D G Y+C+A+N +G +++ LS
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Score = 62.6 bits (152), Expect = 5e-12
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 30 ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA 89
A + G T + P + +K+ + C NP + W ++G
Sbjct: 1 ADPDTGVDTGAPYWTR---PERM--DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 55
Query: 90 ITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS---GIPNIPV 145
RI + ++ SL++ + +D GNY C N GS +Q L P+ P+
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Query: 146 FQ 147
Q
Sbjct: 116 LQ 117
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 73.2 bits (180), Expect = 4e-17
Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
PP + + AE+ C V PP V W + G + R+ +H LL
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
+ TD G Y+C+A N G +
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAY 96
Score = 36.6 bits (85), Expect = 0.001
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
L L AG+Y C A N GE+ + V V+ PP
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGEAYA-AAAVTVLEPP 107
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 75.4 bits (185), Expect = 8e-17
Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 20/146 (13%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-----------------V 54
+ ++++ + G Y + + S +V ++ V
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 55 EKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
E + + C V + W++D I++ + D +LL+
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFS 179
Query: 114 DTDFGNYMCQASNNLGSSQQFIQLSG 139
D G Y ++ G + ++L
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 61.5 bits (149), Expect = 1e-11
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNL 128
+ AKV + + I G + MH+ + + ++D D G Y Q +
Sbjct: 25 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 84
Query: 129 GSSQ 132
++
Sbjct: 85 ATNH 88
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 75.2 bits (184), Expect = 9e-17
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 13/143 (9%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV---EKQWIHTAPDM 65
+++ + + AG+ C A N S +IV V+ V I +
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121
Query: 66 RAEIICNVYANPPAKVE--WFRDGTAITLGGRI--------DMHVSSEKHSLLVRHIKDT 115
+ + C ++ W + + + +L + + +
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181
Query: 116 DFGNYMCQASNNLGSSQQFIQLS 138
D G Y C AS+ L + + +
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVR 204
Score = 41.3 bits (96), Expect = 8e-05
Identities = 14/104 (13%), Positives = 23/104 (22%), Gaps = 3/104 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
+I + I C + V + K
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 67
Query: 109 VRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVFQKSS 150
+ + G C+A N S S +I + I S
Sbjct: 68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSP 111
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 77.5 bits (190), Expect = 1e-16
Identities = 40/247 (16%), Positives = 73/247 (29%), Gaps = 26/247 (10%)
Query: 8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW----IHTAP 63
+NR L + + + ++ + V V+ P +
Sbjct: 120 WNRAELAISTFWPNFYQVIFEVITSG-HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNA 178
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS---LLVRHIKDTDFGNY 120
A C+ A + G + ++ V+S + V + D G Y
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 121 MCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLL 175
C G S + P +P+ +G + ++ +G I+ +
Sbjct: 239 RCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREV 298
Query: 176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR--FGWSRPS 233
++ W + P+ + SY I L T+YE SVL G P
Sbjct: 299 EY--CTASGSWNDRQ---------PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG 347
Query: 234 KAYVFAT 240
A T
Sbjct: 348 PALRTRT 354
Score = 53.6 bits (128), Expect = 2e-08
Identities = 29/256 (11%), Positives = 62/256 (24%), Gaps = 44/256 (17%)
Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------------SVEKQWIH 60
++ T + AG Y+C+ G S + V PP + Q
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284
Query: 61 TAPDMRAEIIC-NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK-DTDFG 118
+ + I+ V G + + S + H+ DT++
Sbjct: 285 NSINGDGPIVAREVEYCTA--------------SGSWNDRQPVDSTSYKIGHLDPDTEY- 329
Query: 119 NYMCQASNNLGS-------SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYS 168
+ + + P + + + W+ +
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ + + + D + IT L +T ++ N
Sbjct: 390 CHSYNLTVHYCYQVGGQEQVREEVSWD----TENSHPQHTITNLSPYTNVSVKLILMNPE 445
Query: 228 GWSRPSKAYVFATEGA 243
G + V E
Sbjct: 446 GRKESQELIVQTDEDL 461
Score = 45.5 bits (107), Expect = 7e-06
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 123 QASNNLG---SSQQFIQ-LSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLK 176
N G S + +Q +P + + L W+ T + I Y +
Sbjct: 440 ILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEIT 499
Query: 177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY 236
++ P ++ S G ++ + GL T Y ++ A G+ P+
Sbjct: 500 YKAVSSFDPEIDLSNQS-GRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQ 558
Query: 237 VFATEGA 243
A
Sbjct: 559 FTTKISA 565
Score = 32.1 bits (72), Expect = 0.20
Identities = 12/62 (19%), Positives = 19/62 (30%)
Query: 184 TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
P ++ ++ Y T L + Y A +R AT+GA
Sbjct: 645 FPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGA 704
Query: 244 ET 245
T
Sbjct: 705 AT 706
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 74.7 bits (183), Expect = 2e-16
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 6/144 (4%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + V L+ AG+Y+C+ S G + K V V P ++ + E+ C
Sbjct: 81 ALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTC 138
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR---HIKDTDFGNYMCQASNNL 128
P A+V W + G + E+ V I T + C
Sbjct: 139 QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLD 198
Query: 129 GSSQQFIQLSGIPNIPVFQKSSRR 152
+L IP +P+ + R
Sbjct: 199 PEENHTAELV-IPELPLAHPPNER 221
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 71.6 bits (176), Expect = 2e-16
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 35 GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG 94
G S S EV + + +A C V ++ +W+++G +
Sbjct: 1 GSSGSS-------GQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSK 52
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
RI + H L++ ++ D G+Y S
Sbjct: 53 RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLS 90
Score = 31.6 bits (72), Expect = 0.071
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 52
L +D V + G Y + ++K +N +
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSLSAK---LNFLEIKVS 101
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 75.8 bits (186), Expect = 2e-16
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 19/153 (12%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 58
I+L + + SL ++ V G Y C+ N G S + + ++V+ P +
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPAN 231
Query: 59 IHTAPDMRAEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKH 105
E C VY++ ++W + +G+ + G + V E
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L + ++ D G Y C A N++G S L
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 75.0 bits (184), Expect = 5e-16
Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 25/152 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN--------------------VIYPPE 51
L + + + +G Y C + V P
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Query: 52 VS----VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHS 106
+ ++K+ + C NP + W ++G RI + + ++ S
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 181
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L++ + +D GNY C N GS +Q L
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213
Score = 55.8 bits (134), Expect = 2e-09
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
P +++ + E+ C P W +DGT + R+ + L
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRL 63
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
V + D G Y C+ F
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93
Score = 44.6 bits (105), Expect = 1e-05
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 55
E L L VT + AG Y C+A N+IG S + + V+ E VE
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVVLPAEEELVE 334
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 73.9 bits (181), Expect = 3e-16
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
E++Y+ SL +T+K G+Y ++ T +V P + T +
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
+ + + + + A ++W + ++ L R M +S L + IK D G Y C+
Sbjct: 125 LDSVTLTCLSNDIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEI 182
Query: 125 SNNLGSSQ 132
SN + +
Sbjct: 183 SNPVSVRR 190
Score = 51.2 bits (122), Expect = 4e-08
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
+ L N L +D + + AG YQC SN + S + +++I+ P
Sbjct: 156 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203
Score = 35.8 bits (82), Expect = 0.007
Identities = 23/167 (13%), Positives = 44/167 (26%), Gaps = 25/167 (14%)
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK------ 104
EV++E A D ++ + W++ T + I V +
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNT-TAIDKEIARFVPNSNMNFTGQ 59
Query: 105 -----------HSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSRR 152
SLL + I D G Y ++ Q ++ +
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 153 LGP---DGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGS 196
D L + IQ+ + L + + + S
Sbjct: 120 TTVKELDSVTLTCLSNDIGANIQW---LFNSQSLQLTERMTLSQNNS 163
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.5 bits (173), Expect = 5e-16
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
V + P ++ + D I V NP ++WF +G + I + H
Sbjct: 1 VHFAPTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNI 143
L + + + G+Y A N G ++ I G P I
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 38.6 bits (90), Expect = 2e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 52
L LD T G Y IA N G+ K + + P +
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 74.8 bits (183), Expect = 5e-16
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 22/148 (14%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY------PPEVSVEKQWIHTA 62
L + V K G Y C AS ++ + P VS + +
Sbjct: 163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD 222
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI------------DMHVSSEKHSLLVR 110
+ ++ICNV W +G+ I + + S+ L +
Sbjct: 223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282
Query: 111 HIKDTDF-GNYMCQASNNLGSSQQFIQL 137
I+ + + C A N G +IQL
Sbjct: 283 EIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 72.1 bits (176), Expect = 5e-15
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHT---APD 64
++E L ++ +G Y C+ N+ + P + Q I
Sbjct: 60 HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI-KISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 65 MRAEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
++C N K++W++D + L H S K L+V ++ + G
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRG 175
Query: 119 NYMCQASNNLGSSQ 132
NY C AS Q
Sbjct: 176 NYTCHASYTYLGKQ 189
Score = 58.2 bits (140), Expect = 4e-10
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 71 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
C + N + W++D + + + K L K D G+Y C N+
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86
Query: 130 SSQQFIQLSGIPNIPVFQKSSR 151
+ I + N P +++
Sbjct: 87 CLRIKISAKFVENEPNLCYNAQ 108
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 70.7 bits (173), Expect = 7e-16
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 37 STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGR 95
S+ + + V PP +S + H + +I C + + P P ++ W + G
Sbjct: 2 SSGSSGTLTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 96 IDMHVSSE------KHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQLS 138
V + +L + +I DF Y C A N+ GS + I+L
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 27.5 bits (61), Expect = 1.7
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNV 46
+Y C A N+ G S ++ +
Sbjct: 89 QTIYNCTAWNSFG-SDTEIIRLKE 111
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 71.9 bits (176), Expect = 9e-16
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 23/139 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L + + ++ + Y C + E F + + + +
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEVQLLVF--GLTANSDTHLL-------QGQSLTLTL 119
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
V+ GG+ +L V ++ D G + C N
Sbjct: 120 ESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKV 169
Query: 132 QQFIQLSGIPNIPVFQKSS 150
+ I + + FQK+S
Sbjct: 170 EFKIDIV----VLAFQKAS 184
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 18/105 (17%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 109
E+ C + W LG R D S L++
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 110 RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSSRRL 153
+++K D Y+C+ + Q L+ + + Q S L
Sbjct: 73 KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 117
Score = 38.8 bits (90), Expect = 5e-04
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
+ + ++L + ++ L+ +G + C N + V+ + S
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 184
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 74.5 bits (182), Expect = 1e-15
Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIYPP--EVSVEKQWIHTAP 63
R L L + C A+ + ++ + V+Y P +
Sbjct: 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 384
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
+ + +C + NP +++ +DGT G + G Y+C+
Sbjct: 385 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES-------------VTVTRDLEGTYLCR 431
Query: 124 ASNNLGSSQQFIQLS 138
A + G + + ++
Sbjct: 432 ARSTQGEVTREVTVN 446
Score = 60.3 bits (145), Expect = 1e-10
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 8/112 (7%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPA-- 79
C ++ ++ + V + PE V + + C V P
Sbjct: 60 DSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 80 -KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
V R + R + + V +D N+ C+ +L
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP 167
Score = 52.6 bits (125), Expect = 4e-08
Identities = 10/114 (8%), Positives = 27/114 (23%), Gaps = 15/114 (13%)
Query: 26 YQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWF 84
C T + + P V + K + + C + +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS--EGTEVTVKCEAHPRAKVTLNGV 318
Query: 85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ LL++ + + ++ C A+ + +
Sbjct: 319 PAQP------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360
Score = 48.3 bits (114), Expect = 9e-07
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 12/127 (9%)
Query: 23 AGLYQCIASNNIG-------ESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVY 74
+ C ++ E+TS + + P + D + ++C++
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 75 ANPP---AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
P A+V + S K S+ V +D C S
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQ 272
Query: 132 QQFIQLS 138
+ ++
Sbjct: 273 ETLQTVT 279
Score = 43.7 bits (102), Expect = 3e-05
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49
+ VT L G Y C A + G ++ VNV+ P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 450
Score = 31.0 bits (69), Expect = 0.38
Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR 110
+ SV + + C+ + P + L + + + + +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELS 55
Query: 111 HIKDTDFGNYMCQASNNLGSSQQFIQLS 138
++++ MC ++ G S L+
Sbjct: 56 NVQED--SQPMCYSNCPDGQSTAKTFLT 81
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 69.3 bits (170), Expect = 1e-15
Identities = 16/89 (17%), Positives = 32/89 (35%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
+ + + + A C+ P V W R G ++ R + + K +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
+ ++ +D GNY N+ G + L
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 34.6 bits (80), Expect = 0.006
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 40
++ + + ++ V G Y + N+ G+ ++
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 99
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 68.1 bits (167), Expect = 3e-15
Identities = 15/89 (16%), Positives = 28/89 (31%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P++ + I + + P W + L + + S S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
K D GNY + N LG + ++
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 30.4 bits (69), Expect = 0.12
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
S+ +G Y+ N +GE + F V V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEA-IFEVIV 92
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 68.7 bits (168), Expect = 4e-15
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE 103
+ V YPP V ++ + I V NPP + W +G + I + E
Sbjct: 3 LTVYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 104 KH----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
LL + GNY A N LG++ Q I
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
Score = 37.5 bits (87), Expect = 6e-04
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
L ++ T G Y IA N +G ++ + + P
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 103
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 72.6 bits (177), Expect = 4e-15
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 26/166 (15%)
Query: 7 LYNRESLDLDRVTLKLAGLYQCIAS---NNIGESTSKNFIVNVIYPPEVSV--------E 55
+ +L + G Y C+ + N ++ V V+ P+ +V +
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPND 232
Query: 56 KQWIHTAPDMRAEIICNVY----ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS----- 106
P I C VY + +V W DG S HS
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDE 292
Query: 107 -----LLVRHIKDTDFG-NYMCQASNNLGSSQQFIQLSGIPNIPVF 146
L ++ + D +Y+C A + G + ++ P +
Sbjct: 293 TRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRY 338
Score = 64.5 bits (156), Expect = 3e-12
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 14/130 (10%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
L L G Y C+ N S F + V+ +
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ 138
Query: 68 -----EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
+ ++ + W+ I + E +L ++ GNY C
Sbjct: 139 RITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLSFLIALISNNGNYTC 194
Query: 123 QASNNLGSSQ 132
+
Sbjct: 195 VVTYPENGRT 204
Score = 49.9 bits (118), Expect = 2e-07
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-----HVSSEKHSLLVRHIKDTD 116
+ + + + + W+ L I+ +S EK L R D
Sbjct: 31 LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90
Query: 117 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSR 151
GNY C N S+ L + F +
Sbjct: 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMK 125
Score = 33.3 bits (75), Expect = 0.051
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 11 ESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 69
+ L + +VT + L Y C A + GE +K V P AP E+
Sbjct: 296 QILSIKKVTSEDLKRSYVCHARSAKGE-VAKAAKVKQKVP------------APRYTVEL 342
Query: 70 IC 71
C
Sbjct: 343 AC 344
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 72.0 bits (176), Expect = 6e-15
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 9/134 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEI 69
+L L + +G Y C N + + V + + +
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVL 140
Query: 70 ICN-----VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
+C K++W++D + + V LLV + D G Y C
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVL 199
Query: 125 SNNLGSSQQFIQLS 138
+ Q I S
Sbjct: 200 TFAHEGQQYNITRS 213
Score = 67.8 bits (165), Expect = 2e-13
Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 25/154 (16%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVI-----YPPEVSVEKQWIH 60
L + V L+ AG Y+C+ + + +++ + + P + + I
Sbjct: 178 GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237
Query: 61 TAPDMRAEIICNVYA---NPPAKVEWFR----------DGTAITLGGRIDMHVSSEK--- 104
+ R I C V+ P + W+ G +T G R + ++E
Sbjct: 238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297
Query: 105 HSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQL 137
L+ + D ++ C N L +
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 58.5 bits (141), Expect = 3e-10
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
+P + W ++ +A T+ G + + ++ +L + D G Y+C N
Sbjct: 47 LWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC 106
Query: 131 SQQFIQLS 138
+ I+L
Sbjct: 107 DKMSIELR 114
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 71.2 bits (174), Expect = 6e-15
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 18/120 (15%)
Query: 24 GLYQCIASNNIG---ESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEIICNVYANPP 78
+ C A+ + ++ + V+Y P + + + +C + NP
Sbjct: 155 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 214
Query: 79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+++ +DGT G + G Y+C+A + G + + ++
Sbjct: 215 PELKCLKDGTFPLPIGES-------------VTVTRDLEGTYLCRARSTQGEVTREVTVN 261
Score = 50.8 bits (121), Expect = 8e-08
Identities = 10/111 (9%), Positives = 27/111 (24%), Gaps = 15/111 (13%)
Query: 23 AGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV 81
C T + + P V + K + + + C + +
Sbjct: 73 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV--SEGTEVTVKCEAHPRAKVTL 130
Query: 82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ LL++ + + ++ C A+ +
Sbjct: 131 NGVPAQP------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQL 169
Score = 43.5 bits (102), Expect = 2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49
+ VT L G Y C A + G ++ VNV+ P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 265
Score = 33.5 bits (76), Expect = 0.050
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 67 AEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
++C++ P +V + S K S+ V +D C
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCA 79
Query: 124 ASNNLGSSQQFIQLS 138
S + ++
Sbjct: 80 VILGNQSQETLQTVT 94
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 72.1 bits (176), Expect = 7e-15
Identities = 19/187 (10%), Positives = 49/187 (26%), Gaps = 22/187 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
L + + ++ + Y C + E + + + + +
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANSDTHLL-------QGQSLTLTL 118
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
V+ GG+ +L V ++ D G + C N
Sbjct: 119 ESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 132 QQFIQLSGIPNIPVFQKSSRRLG---PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN 188
+ I + + ++ G + L + V+ +G + + W
Sbjct: 169 EFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWIT 228
Query: 189 IVIPSDG 195
+ +
Sbjct: 229 FDLKNKE 235
Score = 61.4 bits (148), Expect = 4e-11
Identities = 17/154 (11%), Positives = 40/154 (25%), Gaps = 21/154 (13%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIVNVIYPPEVSVEKQWIHTAP 63
+ + ++L + ++ L+ +G + C N + K + +V V K+
Sbjct: 136 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVE 195
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTA-------ITLGGRIDMHVSSEKH----------- 105
++ W + + L + +
Sbjct: 196 FSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255
Query: 106 --SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
+L + GN G Q + L
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 50.6 bits (120), Expect = 1e-07
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 18/102 (17%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 109
E+ C + W LG R D S L++
Sbjct: 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71
Query: 110 RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSS 150
+++K D Y+C+ + Q L+ + + Q S
Sbjct: 72 KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQS 113
Score = 45.6 bits (107), Expect = 7e-06
Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 29/120 (24%)
Query: 12 SLDLDRVTLKLA--GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 69
L L + + A G G+ + + V+ A ++ +
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVM-------------RATQLQKNL 301
Query: 70 ICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
C V+ K+ + + R + + + G + C S++
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSDS 350
Score = 26.3 bits (57), Expect = 9.5
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
+ V AG++QC+ S++ N+ P
Sbjct: 328 KREKAVWVLNPEAGMWQCLLSDSGQVLLE----SNIKVLP 363
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 67.4 bits (165), Expect = 8e-15
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 40 KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH 99
+ V P ++ + T+ E+ C NPP ++ WF+D + I
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--V 58
Query: 100 VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ +L +R ++ D G Y CQA + LG ++
Sbjct: 59 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAK 91
Score = 37.3 bits (87), Expect = 7e-04
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
I L +L + RV + GLY C A + +G + + F + E +
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF-FIIEGAQEKT 105
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 67.4 bits (165), Expect = 9e-15
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
E+ V P W + I + + S L + + G Y N
Sbjct: 25 VELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84
Query: 127 NLGSSQQFIQLS--GIPNIPVF 146
LGS Q + L+ P+ P
Sbjct: 85 KLGSRQAQVNLTVVDKPDPPAG 106
Score = 34.2 bits (79), Expect = 0.009
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
++E N L + + G Y + N +G + + V+ P+
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKPD 102
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 66.9 bits (164), Expect = 1e-14
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P + + AP E+ C + + V W +D AI + D+ L+
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
+R D G Y C+ + ++ ++
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTASLHVE 94
Score = 25.7 bits (57), Expect = 7.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGEST 38
L + +LK AG Y C + ++
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTAS 90
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 68.0 bits (166), Expect = 2e-14
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 23 AGLYQCIASNNIGESTS---KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA 79
+ I +N + + + P + + A C V P
Sbjct: 12 SSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP 71
Query: 80 KVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+V WF+D + + E SL + + D Y C+A N+LG +
Sbjct: 72 EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125
Score = 35.2 bits (81), Expect = 0.007
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
SL + V Y C A N++GE+T
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCT 127
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 68.4 bits (167), Expect = 2e-14
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVSVEK 56
EK+ L+ +L + + +Y+ + G++ K F + + P++S
Sbjct: 56 EKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTC 115
Query: 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 116
+ C V ++ ++DG + L R ++ +
Sbjct: 116 I--------NTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSL 156
Query: 117 FGNYMCQASNNLGSSQQFIQLS 138
+ C A N + +S
Sbjct: 157 SAKFKCTAGNKVSKESSVEPVS 178
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 65.8 bits (161), Expect = 3e-14
Identities = 17/89 (19%), Positives = 35/89 (39%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE 103
+ + P +++ + I NV + P A+V+W+ +G + +I +S
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+L + D G Y +N G +
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKGEAS 91
Score = 34.2 bits (79), Expect = 0.007
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
+L++ +G Y+ + +N GE++
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDY 93
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 65.5 bits (160), Expect = 3e-14
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 35 GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG 94
G S S V++ E ++ + A + C V A +V W++DG ++
Sbjct: 1 GSSGSS---GKVVFAKEQPAHRE-VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSS 55
Query: 95 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
++ + L+V+ + G Y C+A S
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS 91
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 65.0 bits (159), Expect = 4e-14
Identities = 21/84 (25%), Positives = 30/84 (35%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P + Q + D A+ P W +DG AIT GG+ + L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
+ +D G Y C N+ GS
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVS 89
Score = 33.8 bits (78), Expect = 0.008
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
L++ + +GLY C N+ G +S
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 68.8 bits (168), Expect = 5e-14
Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 15/145 (10%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
+ S + ++ +G Y+C + S + + + ++
Sbjct: 46 STPSYRITSASVNDSGEYRCQRGLS---GRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLA 101
Query: 69 IICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
+ C+ + + V ++R+G A +L + + G Y C
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCSGMGK 153
Query: 128 LG--SSQQFIQLSGIPNIPVFQKSS 150
S+ + + + PV S
Sbjct: 154 HRYTSAGISVTVKELFPAPVLNASV 178
Score = 63.4 bits (154), Expect = 4e-12
Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 14/138 (10%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIH 60
K + + +L + + + G Y C S + V ++P V
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP 181
Query: 61 TAPDMRAEIICNVYANPPA-----KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
+ C ++ + + + +
Sbjct: 182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL--------RGRNTSSEYQILTARRE 233
Query: 116 DFGNYMCQASNNLGSSQQ 133
D G Y C+A+ G+ +
Sbjct: 234 DSGLYWCEAATEDGNVLK 251
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
++++ W+ + + C V P + +WF +GTA + S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTAT----------QTSTPSYR 51
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS 149
+ D G Y CQ + S +++ +
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSR 92
Score = 29.9 bits (67), Expect = 0.75
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
+ + +GLY C A+ G ++ + +
Sbjct: 224 EYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 67.2 bits (164), Expect = 5e-14
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
+ + + + +G Y C S S + V++ V +
Sbjct: 45 LIPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQTPHLEFQEGE 101
Query: 65 MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
+ C+ + + P KV +F++G + S + + + G+Y C
Sbjct: 102 T-IMLRCHSWKDKPLVKVTFFQNGKSQ--------KFSHLDPTFSIPQANHSHSGDYHCT 152
Query: 124 ASNNLGSSQ 132
+
Sbjct: 153 GNIGYTLFS 161
Score = 54.4 bits (131), Expect = 2e-09
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
+ +E WI+ + + C +P ++WF +G I +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI----------PTHTQPSY 54
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
+ D G Y CQ S + + +
Sbjct: 55 RFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQ 91
Score = 40.6 bits (95), Expect = 1e-04
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
K + + + + + +G Y C + +SK + V
Sbjct: 125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 64.7 bits (158), Expect = 6e-14
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
++ VE + AP + C V A P ++ W +DG + L L+
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------PVLI 60
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
+ I D G Y C A+++ Q
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQ 84
Score = 39.7 bits (93), Expect = 7e-05
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP 49
L L + + G Y C+A+++ S+ +++I P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 65.1 bits (159), Expect = 7e-14
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P + + + + A + C + + A VEW + + GGR + + L
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
+ + D G Y C S+ ++
Sbjct: 66 IHDLSVADAGEYSCMCGQERTSATLTVR 93
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 64.3 bits (157), Expect = 8e-14
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 60 HTAPD-MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 117
+ + +C + +V W+ + + ++ L V+ I D
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70
Query: 118 GNYMCQASNNLGSSQQFIQLS 138
G Y C+ N+ G + +L
Sbjct: 71 GTYRCKVVNDYGEDSSYAELF 91
Score = 33.1 bits (76), Expect = 0.015
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
L + +T G Y+C N+ GE +S
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSY 87
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 67.6 bits (164), Expect = 1e-13
Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 29/158 (18%)
Query: 10 RESLDLDRVTLKLAGLYQCIASNNIG------ESTSKNFIVNVIYP--PEVSVEKQWIHT 61
+L L V + G Y C + ++ S V P + +
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148
Query: 62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH---------------- 105
+ C A V W+ T + K+
Sbjct: 149 DEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRAS 208
Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+L++R K TD G C+ + G +
Sbjct: 209 FSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Score = 36.4 bits (83), Expect = 0.005
Identities = 12/113 (10%), Positives = 26/113 (23%), Gaps = 32/113 (28%)
Query: 52 VSVEKQWIHTAPDMRAEIICNVYA---NPPAKVEWFRDGTAITLGGRIDMH--------- 99
V + E+ C+ P + W + + +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 100 --------------------VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ +L + H+ D G Y CQ + ++
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 63.7 bits (155), Expect = 1e-13
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P V VE + + P ++ C + + + W RDG + R + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRL-RDDVQSINWLRDGVQLVESNRTRI----TGEEVE 63
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
VR D G Y C S+ GS + ++
Sbjct: 64 VRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 40.6 bits (95), Expect = 4e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
E +++ +GLY C+ S+ G T+ F VNV
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTT-YFSVNV 94
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 64.0 bits (156), Expect = 1e-13
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 37 STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI 96
S+ + ++YP K ++ R + C + P A+V W +DG + +
Sbjct: 5 SSGTDVSSWIVYPSG----KVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL 59
Query: 97 DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
+ L++ ++ D G Y+C+ + S +
Sbjct: 60 LLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFTVTVT 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 63.6 bits (155), Expect = 2e-13
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P V+K R + + A+P +V+W+++G I + + L
Sbjct: 15 DPAYQVDK-------GGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
+ + + TD Y A + S++ F++
Sbjct: 67 INNCQMTDDSEYYVTAGDEKCSTELFVR 94
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 65.7 bits (159), Expect = 3e-13
Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 28/152 (18%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGE-----------STSKNFIVNVIYPPEVSVEKQ 57
+++ +L G+YQC S N + +K + +K
Sbjct: 47 DKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKD 106
Query: 58 WIHTAPDM---------------RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS 102
+M + C Y P +++ W + I S
Sbjct: 107 GSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSD 164
Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
E H L + G Y+C + F
Sbjct: 165 EDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 41.4 bits (96), Expect = 8e-05
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 10/85 (11%)
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
C+ + WF+DG I + L + KD G Y C+ S N
Sbjct: 25 CDA---EAKNITWFKDGKMIGFLTEDKKKWN------LGSNAKD-PRGMYQCKGSQNKSK 74
Query: 131 SQQFIQLSGIPNIPVFQKSSRRLGP 155
Q G + + +
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAK 99
Score = 30.6 bits (68), Expect = 0.36
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNV 46
+G Y C + E + +
Sbjct: 179 SGYYVCYPRGSKPEDANFYLYLRA 202
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 62.8 bits (153), Expect = 3e-13
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
VE + P ++ C + + + W RDG + R + +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRI----TGEEVE 57
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP 144
V+ D G Y C S+ GS + ++ +P
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 40.1 bits (94), Expect = 5e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
E +++ +GLY C+ S+ G T+ F VNV
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTT-YFSVNVSDALP 93
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 63.6 bits (155), Expect = 3e-13
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 30 ASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAEIICNVYANPPAKVEWFRD 86
+S + G I + PP++ + +Q + ++ P +V W +
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
G + R+ + S VR +D G Y I++
Sbjct: 62 GAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 34.7 bits (80), Expect = 0.007
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
+ + + +G Y+ + T+ + V+
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA-TIRIRVVEKA 117
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 63.1 bits (154), Expect = 3e-13
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQAS 125
+ V P V W+ +G + M VS + HSL+ ++ +D G Y C A
Sbjct: 23 CRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82
Query: 126 NNLGSSQQFIQLS 138
N G + +QL
Sbjct: 83 NRAGEATFTVQLD 95
Score = 34.2 bits (79), Expect = 0.007
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
SL + V AG Y C+A N GE+T
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFT 91
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 65.7 bits (160), Expect = 3e-13
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 16/141 (11%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
S +D T+ +G Y+C + + S + V + +W+ D
Sbjct: 52 QASSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107
Query: 69 IICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
+ C+ + N KV + ++G + D G+Y C+
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGR--------KYFHHNSDFYIPKATLKDSGSYFCRGLVG 159
Query: 128 LG---SSQQFIQLSGIPNIPV 145
S I ++ +
Sbjct: 160 SKNVSSETVQITITQGLAVST 180
Score = 48.7 bits (116), Expect = 3e-07
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
V +E QW + C +P +WF + + I SS+ S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI----------SSQASSYF 57
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
+ D G Y CQ + S +++ +
Sbjct: 58 IDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQ 94
Score = 42.2 bits (99), Expect = 5e-05
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 54
K + ++ + + TLK +G Y C +S+ + + VS
Sbjct: 128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 62.8 bits (153), Expect = 4e-13
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
++ + + C + + + W G + R K+ L
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
+VR +D G + + ++
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSKASLIVR 96
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 61.9 bits (151), Expect = 5e-13
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
A + + P +W G + ++ +KH L++ + + G QA+
Sbjct: 22 TAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80
Query: 126 NNLGSSQ 132
N ++
Sbjct: 81 NTKSAAN 87
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 62.0 bits (151), Expect = 7e-13
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 49 PPEVSV--EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
P + +K + R + C + + W++DG + + + + KH
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
L++ K D G + C+ +Q
Sbjct: 67 LILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
Score = 26.2 bits (58), Expect = 4.4
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
L L ++ +G ++C S V P
Sbjct: 66 RLILPEAKVQDSGEFECRTEG---VSAFFGVTVQDPSGP 101
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 61.9 bits (151), Expect = 8e-13
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HS 106
PP++ I + C P +V W G I + H+ + +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L++ ++ D G Y N GS + +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 31.9 bits (73), Expect = 0.042
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
+L + V + GLY N G ++ +++
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSA-TVNIHI 97
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 61.5 bits (150), Expect = 9e-13
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 60 HTAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDF 117
T A V P + EW+++G I RI + + L++R + D
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDS 74
Query: 118 GNYMCQASNNLGS 130
+ M +A N G
Sbjct: 75 ASIMVKAINIAGE 87
Score = 33.8 bits (78), Expect = 0.011
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
L + VT + + A N GE++S
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSH 91
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 61.6 bits (150), Expect = 9e-13
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
A KV W R G+ I+ + + +H+L VR + D G+Y A
Sbjct: 25 PAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAG 83
Query: 126 NNLGS 130
++
Sbjct: 84 SSKVK 88
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 60.8 bits (148), Expect = 2e-12
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT----LGGRIDMHVSSEK 104
P + + R E+ V + A+V W ++G +T R ++
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
H L+ + D G Y + ++ ++
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCEAELIVE 98
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 60.8 bits (148), Expect = 2e-12
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 44 VNVIYPPEVSVEKQWIHTAPD-MRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS 101
++ + + + + + + A+ A+V+W ++G I + G +
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI 68
Query: 102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
K +L + D Y C S++ F++
Sbjct: 69 GAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVK 103
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 60.8 bits (148), Expect = 2e-12
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSL 107
PP V + V P V W R+ + R L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ + D G Y C+A N G+ Q +L
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 35.3 bits (82), Expect = 0.003
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
L + AG Y C A N G +
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCE 91
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 60.4 bits (147), Expect = 2e-12
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
+ E + A C +P A V W + + G+ L
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
+ ++ D Y C +Q +Q
Sbjct: 67 ISALEKADSDTYTCDIGQAQSRAQLLVQ 94
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 62.6 bits (152), Expect = 2e-12
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 13/123 (10%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
S +D T+ +G Y+C + + S + V + +W+ D
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107
Query: 69 IICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
+ C+ + N KV + ++G + D G+Y C+
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDR--------KYFHHNSDFHIPKATLKDSGSYFCRGLVG 159
Query: 128 LGS 130
+
Sbjct: 160 SKN 162
Score = 51.8 bits (124), Expect = 2e-08
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
V +E QW + C +P +WF + + I SS+ S
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI----------SSQASSY 56
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
+ D G Y CQ + + S +++ +
Sbjct: 57 FIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQ 94
Score = 36.4 bits (84), Expect = 0.003
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 48
K+ + ++ + + TLK +G Y C +S+ + +
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 60.4 bits (147), Expect = 3e-12
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P + + A + C + ++ A V+W + G + + L+
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVL-SSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP 144
VR+++ D G Y C + S+ + +P+ P
Sbjct: 67 VRNLRPQDSGRYSCSFGDQTTSATLTVT--ALPSGP 100
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 60.1 bits (146), Expect = 3e-12
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHI 112
+EK+ + C NP + W ++G RI V ++ SL++ +
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72
Query: 113 KDTDFGNYMCQASNNLGSSQQFIQL 137
+D GNY C N GS L
Sbjct: 73 VPSDKGNYTCVVENEYGSINHTYHL 97
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47
++ SL ++ V G Y C+ N G S + + ++V+
Sbjct: 58 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV 100
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 60.3 bits (146), Expect = 6e-12
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 10/97 (10%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-- 105
+ P I +V P + W +G+ + I
Sbjct: 2 HMPASVQLHT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58
Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
L + + GNY A+N G + I
Sbjct: 59 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
Score = 37.6 bits (87), Expect = 7e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
L L++ T G Y +A+N G+ S + + + P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEF 104
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 61.7 bits (149), Expect = 7e-12
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 8/128 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L ++ V+ Y C A+ K V + P+ + C
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113
Query: 72 NVYANPPA---KVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQA 124
+V P +++ + + D K + D G +C+A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173
Query: 125 SNNLGSSQ 132
++
Sbjct: 174 KLHIDEMD 181
Score = 41.7 bits (97), Expect = 6e-05
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
+ C+ W R L G++ ++ +L + + + +Y+C A+
Sbjct: 19 VSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTT--STLTMNPVSFGNEHSYLCTATC 75
Query: 127 NLGSSQQFIQL 137
++ IQ+
Sbjct: 76 ESRKLEKGIQV 86
Score = 28.6 bits (63), Expect = 1.6
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 24 GLYQCIASNNIGE------STSKNFIVNVIYPPEVS 53
+ C A +I E + V P+ +
Sbjct: 167 KVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 59.7 bits (145), Expect = 7e-12
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHS 106
P + Q ++ C + A PP K+ W R+ + RI ++ + + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPV 145
LL++ + D G Y A N G + +L PN +
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 35.8 bits (83), Expect = 0.003
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 54
+L + V K AG Y A N G +T ++V P ++
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTARPNQTL 115
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 59.3 bits (144), Expect = 8e-12
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQ 123
+ C V P + W DG + M + HSL++ + D G Y C
Sbjct: 25 KLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84
Query: 124 ASNNLGSSQQFIQLS--GIPNIP 144
A+N G + ++L + P
Sbjct: 85 ATNRAGQNSFSLELVVAAKESGP 107
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
SL ++ VT + AG+Y CIA+N G+++ + + V
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSF-SLELVVAAKES 105
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.4 bits (144), Expect = 1e-11
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
PP + A D + C +P + W +DG ++ E L
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR--IKQLENGVLQ 65
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
+R+ K D G Y C AS G + +
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 33.6 bits (77), Expect = 0.016
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTS 39
L + L G Y CIAS GE+T
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATW 90
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 58.1 bits (141), Expect = 2e-11
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P S + + C+V P ++ W +G I + L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELH 67
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
++ D G Y C A N LG
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVS 91
Score = 33.4 bits (77), Expect = 0.014
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
L + + G Y C+A N +G+ +
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCS 93
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 58.1 bits (141), Expect = 2e-11
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 123
R E+ C V + A V+WF++G I G + + E KH L++ D Y
Sbjct: 24 RVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 82
Query: 124 ASNNLGSSQQFIQL 137
+ S++ + L
Sbjct: 83 TTGGQSSAKLSVDL 96
Score = 30.0 bits (68), Expect = 0.20
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
L ++ T A Y + + +S V++ P
Sbjct: 65 ILIIEGATKADAAEYSVMTTG---GQSSAKLSVDLKSGP 100
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 57.7 bits (140), Expect = 2e-11
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
++ VE P + C +P +WF++ +T K +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYM 53
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
V ++ G Y C N+ S
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQD 77
Score = 44.6 bits (106), Expect = 1e-06
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
++ + V L+ G Y C N+ SK + +
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 59.6 bits (144), Expect = 3e-11
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 23/124 (18%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVSVEKQWIHTAPDMRA 67
L + +T +G Y + G +K + ++ P + E A
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWE--------CSNA 113
Query: 68 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
+ C V +++ ++ + + M + C+A N
Sbjct: 114 TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APFKCKAVNR 162
Query: 128 LGSS 131
+
Sbjct: 163 VSQE 166
Score = 38.0 bits (88), Expect = 0.001
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 81 VEWFRDGTAI-TLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSS-- 131
V W R T + ++ + S L ++++ D G Y + G+
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89
Query: 132 QQFIQLSGIPNIP 144
+ + L + +
Sbjct: 90 NKALDLRILEMVS 102
Score = 32.6 bits (74), Expect = 0.069
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS 39
E L + + L ++C A N + + +
Sbjct: 134 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 168
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 57.8 bits (140), Expect = 3e-11
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI-TLGGRIDMHVSSEKHSL 107
PP + A D A + C +P + W ++G R + E+ +L
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTL 64
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+++++ +D G Y C A+++ G + L
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 33.5 bits (77), Expect = 0.011
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTS 39
+L + + + G Y C+A+++ GE++
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSW 90
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 59.5 bits (144), Expect = 3e-11
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 13/123 (10%)
Query: 11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
SL++ + +G Y+C + S+ + V + ++ +
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDW-LLLQASAEVVMEGQPLFLR 106
Query: 71 CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
C+ + N KV +++DG A+ E H++ + + D G Y C
Sbjct: 107 CHGWRNWDVYKVIYYKDGEAL--------KYWYENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 130 SSQ 132
+
Sbjct: 159 DYE 161
Score = 51.8 bits (124), Expect = 2e-08
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 23/126 (18%)
Query: 50 PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P+VS+ W + CN + +WF +G+ SL
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS----------EETNSSLN 54
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI------PVFQKSSRRL------GPD 156
+ + K D G Y CQ S ++++ + V + L D
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWD 114
Query: 157 GYRLVW 162
Y++++
Sbjct: 115 VYKVIY 120
Score = 46.0 bits (109), Expect = 2e-06
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
+ ++ Y ++ + T++ +G Y C + S+ + VI P
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 60.1 bits (145), Expect = 3e-11
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 6/143 (4%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP- 63
+L + + V ++ +G Y+C+ + V I P
Sbjct: 61 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYK---YLTVKVKASYMRIDTRILEVPG 117
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
++ C P A+V W + S+L +K N+ C
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLR--LKPQPSRNFSCM 175
Query: 124 ASNNLGSSQQFIQLSGIPNIPVF 146
N + + +
Sbjct: 176 FWNAHMKELTSAIIDPLSRMEPK 198
Score = 42.0 bits (98), Expect = 5e-05
Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLG------GRIDM---HVSSEKHSLLVRHIKDTDF 117
+ C+ ++E R R + + K + ++ D
Sbjct: 20 VSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDS 79
Query: 118 GNYMCQASNNLGSSQQFIQLSGIPNIP-VFQKSSRRLGPDGYRL 160
G Y C +++ + + + + G +L
Sbjct: 80 GQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 57.5 bits (139), Expect = 3e-11
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 49 PPEVSVEK-QWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
P V+VE+ + P IC + +P + W R G++
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH-----NGKLPSRAMDFNGI 63
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
L +R+++ +D G Y+C SN Q L
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 33.6 bits (77), Expect = 0.011
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
L + V AG Y C SN ++V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFA-MDQGTATLHV 96
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 59.3 bits (143), Expect = 5e-11
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
P+ + + W S I +Y+L++R + + W+ IP SY I GL+
Sbjct: 15 PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGH--------LNSYTIKGLKPG 66
Query: 215 TQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
YE +++ ++G ++ T +
Sbjct: 67 VVYEGQLISIQQYGHQEVTRFDFTTTSTST 96
Score = 41.2 bits (96), Expect = 1e-04
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
+ + W + + + +++ EE + + +PS S NI L
Sbjct: 125 ASSFVVSWVSAS-DTVSGFRVEYELSEEGDEPQYLDLPST--------ATSVNIPDLLPG 175
Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
+Y +V + G + T
Sbjct: 176 RKYIVNVYQISEDGEQSLILSTSQTT 201
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 57.0 bits (138), Expect = 6e-11
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ 123
A C + V WF D T + ++ H L +R + D G +
Sbjct: 29 SSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88
Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKS 149
A G + L VF +S
Sbjct: 89 A----GDQRASAALRVTEKPSVFSRS 110
Score = 26.2 bits (58), Expect = 5.3
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
L L ++ LK +G A G+ + + V P V
Sbjct: 71 VLTLRQLALKDSGTIYFEA----GDQRAS-AALRVTEKPSVFSRSG 111
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 59.3 bits (143), Expect = 6e-11
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
SL + + ++ G Y C+ S S + + V+ P+ + E Q + + C
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 138
Query: 72 NVY-ANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASN 126
PPA++ W D + ++ +S + ++ D C+ +
Sbjct: 139 VSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEH 197
Score = 34.7 bits (79), Expect = 0.016
Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 33/144 (22%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-----KVEWFRDGTAITL------ 92
V V P +V + C + ++ W R G + ++
Sbjct: 1 VVVQAPTQVPG-------FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 53
Query: 93 ------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ-ASNNLGSSQQFIQLS- 138
+ SL + ++ D G+Y C + GS I L
Sbjct: 54 QGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
Query: 139 -GIPNIPVFQKSSRRLGPDGYRLV 161
P + + G
Sbjct: 114 LAKPQNTAEVQKVQLTGEPVPMAR 137
Score = 30.8 bits (69), Expect = 0.26
Identities = 4/28 (14%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 26 YQCIASN-NIGESTSKNFIVNVIYPPEV 52
C + + + + V YP
Sbjct: 191 VTCKVEHESFEKPQLLTVSLTVYYPHHH 218
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 59.9 bits (144), Expect = 6e-11
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 31/162 (19%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
SL L V G+Y C K + + P E + + ++ C
Sbjct: 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE----PRDLRVRVGDTTQMRC 140
Query: 72 NVYANPP---AKVEWFRDG----------------------TAITLGGRIDM--HVSSEK 104
++ + KV W + R+D+ +S
Sbjct: 141 SIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRND 200
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 146
S+ ++ +K++D G Y C S++ I L + +
Sbjct: 201 GSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Score = 41.0 bits (95), Expect = 2e-04
Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 56/202 (27%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYA---NPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
P ++V + + C V +V+W + + S+
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 106 --------------------SLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNI 143
SLL++ ++ D G Y C+ S ++L +P
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 144 PVF----------------------------QKSSRRLGPDGYRLVWQVDTYSGIIQYLL 175
P SS + L + + SG Q L
Sbjct: 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG 184
Query: 176 KFREREELTPWRNIVIPSDGSL 197
+FR R + +DGS+
Sbjct: 185 RFRNR---VDLTGDISRNDGSI 203
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 7e-11
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
++ + C + N P +W ++G + R+ + H L+
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLV 64
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142
+ + D G+Y+ + + + P+
Sbjct: 65 IANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS 98
Score = 30.4 bits (69), Expect = 0.16
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
L + + G Y +K V+VI P
Sbjct: 62 KLVIANALTEDEGDYVFAPDAYNVTLPAK---VHVISGP 97
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 56.6 bits (137), Expect = 7e-11
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 60 HTAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTD 116
+ + M C V NP K+ WF+DG I+ SL D
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 77
Query: 117 FGNYMCQASNNLGSSQ 132
GNY A+N G
Sbjct: 78 DGNYTIMAANPQGRIS 93
Score = 35.4 bits (82), Expect = 0.003
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSK 40
SL TL G Y +A+N G +
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCT 95
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 58.3 bits (140), Expect = 2e-10
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 18/153 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE--- 68
L L + Y C+ + +NV PE + T M
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQE 137
Query: 69 -IICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------------SLLVRHIK 113
CN NP K+ W+R+G + + ++ +L +R K
Sbjct: 138 IATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK 197
Query: 114 DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 146
D ++ C A +L + S ++ +
Sbjct: 198 DDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 37.1 bits (85), Expect = 0.003
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 31/136 (22%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFR---DGTAITL------- 92
V + PP V V + C +EWF G L
Sbjct: 2 VRLSVPPLVEV-------MRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQG 54
Query: 93 ----------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNNLGSSQQFIQLS--G 139
GR + + L++ + D +Y+C + G+++ +L+
Sbjct: 55 SELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114
Query: 140 IPNIPVFQKSSRRLGP 155
P + L
Sbjct: 115 KPEATEVSPNKGTLSV 130
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 55.4 bits (134), Expect = 2e-10
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 30 ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA 89
+S + G +++ + + P + + + A + C + + A VEW++
Sbjct: 2 SSGSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHET 57
Query: 90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
+ G R + + L +R + D G Y+C
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGK 94
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 58.9 bits (141), Expect = 3e-10
Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 20/203 (9%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ---------WIHTA 62
S+ ++++ L AG Y C A ++ + N + V+ P V + +
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKK-NADLQVLKPEPELVYEDLRGSVTFHCALGPE 244
Query: 63 PDMRAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGN 119
A+ +C + V G A GRI ++ + S+++ ++ D G
Sbjct: 245 VANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR 304
Query: 120 YMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL----GPDGYRLVWQVDTYSGIIQYLL 175
Y+C A ++ + + + R G G + Y+ +
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC-PYNRKESKSI 363
Query: 176 KFREREELTPWRN--IVIPSDGS 196
K+ E +++ S+G
Sbjct: 364 KYWCLWEGAQNGRCPLLVDSEGW 386
Score = 56.5 bits (135), Expect = 2e-09
Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 24/202 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+++ +++ +G Y+C N S + + V P + + + I C
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 72 NVYANPPAKVEWFRDGTAITL--------------GGRIDMHVSSEKHSLLVRHIKD--- 114
K + + GRI + + L I
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194
Query: 115 TDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYL 174
+D G Y+CQA ++ S+++ + + + + + +
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNAD-----LQVLKPEPELVYEDLRGSVTFHC-ALGPEVANV 248
Query: 175 LKFREREELTPWRNIVIPSDGS 196
KF R+ ++V+ + G
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGK 270
Score = 51.9 bits (123), Expect = 6e-08
Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 10/150 (6%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD--MRAEI 69
++ L+++T + AG Y C+ + + T+ + P +
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF 466
Query: 70 ICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
C + +W G ++ +S SL + + D G Y C
Sbjct: 467 PCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWC 526
Query: 123 QASNNLGSSQQF-IQLSGIPNIPVFQKSSR 151
+ + ++ +
Sbjct: 527 GVKQGHFYGETAAVYVAVEERKAAGSRDVS 556
Score = 48.5 bits (114), Expect = 9e-07
Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 24/189 (12%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
S+ + + + AG Y C A ++ S + + + V + +
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350
Query: 69 IICNVYANPPAKVEWF-----------------RDGTAITLGGR--IDMHVSSEKHSLLV 109
++C ++++ GR + + ++++
Sbjct: 351 VLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVIL 410
Query: 110 RHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY 167
+ D G Y C + + ++ + + G PN+ V + LG +
Sbjct: 411 NQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF 470
Query: 168 SGIIQYLLK 176
S +Y K
Sbjct: 471 SSYEKYWCK 479
Score = 34.6 bits (78), Expect = 0.030
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 16/93 (17%)
Query: 73 VYANPPAKVEWFRDGTAITL--------------GGRIDMHVSSEKHSLLVR--HIKDTD 116
N + W R G GR ++ E + +V + D
Sbjct: 27 TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86
Query: 117 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS 149
G Y C N + L + +
Sbjct: 87 SGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDT 119
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 58.3 bits (141), Expect = 4e-10
Identities = 21/121 (17%), Positives = 39/121 (32%)
Query: 17 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN 76
+++ S F P V+ A C V A+
Sbjct: 450 PPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIAS 509
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
P V W +D + + + + L + +K D G Y +A N+ G+ ++ +
Sbjct: 510 SPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 569
Query: 137 L 137
L
Sbjct: 570 L 570
Score = 42.1 bits (99), Expect = 8e-05
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 135 IQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVI 191
+ P P F + + L W+ G + Y ++ RE + W
Sbjct: 4 VADVPEPEPPRFPIIEN-ILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS-WSPCAK 61
Query: 192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
I GL+ QYE ++A+N+ G S+P
Sbjct: 62 SRY---------TYTTIEGLRAGKQYEFRIIAENKHGQSKPC 94
Score = 29.8 bits (67), Expect = 0.96
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTS 39
L ++RV G Y A N+ G
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEE 566
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 57.0 bits (138), Expect = 1e-09
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSL 107
+ Q + + +C +PP + W ++ + V + +L
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTL 443
Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
VR+ + D G Y+C A+N G+ L
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 39.3 bits (92), Expect = 6e-04
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
+L++ ++ G Y CIA+N G + S ++V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGG-NDSMPAHLHV 475
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 57.2 bits (137), Expect = 1e-09
Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 13/153 (8%)
Query: 99 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP 155
++E + LL + + + + N+ A N LG S+ + + +
Sbjct: 336 APTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINS 395
Query: 156 DGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
+L W + + ++ ++ + RN+ I + + + L
Sbjct: 396 TAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVEN-----SSYLVALDKLNP 450
Query: 214 FTQYEASVLAK--NRFGWSRPSKAYVFAT-EGA 243
+T Y + + WS+ S T E +
Sbjct: 451 YTLYTFRIRCSTETFWKWSKWSNKKQHLTTEAS 483
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 52.8 bits (127), Expect = 2e-09
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
S P P S+ + L W + ++ Y L++ +E I D
Sbjct: 5 SSGPGRPTMMISTTA--MNTALLQWHPPKELPGELLGYRLQYCRADE-ARPNTIDFGKD- 60
Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
Q + +TGL T Y + AKNR G + + E
Sbjct: 61 -------DQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL 101
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 54.1 bits (130), Expect = 2e-09
Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 24/138 (17%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIH 60
++L +L + V+ + G Y + + V P + E
Sbjct: 62 VDLDKTNGALRIYNVSKEDRGDYYMRMLHE--TEDQWKITMEVYEMVSKPMIYWECSNAT 119
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
+ C V +++ ++ + + M +
Sbjct: 120 --------LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APF 160
Query: 121 MCQASNNLGSSQQFIQLS 138
C+A N + + ++
Sbjct: 161 KCKAVNRVSQESEMEVVN 178
Score = 36.0 bits (83), Expect = 0.004
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 81 VEWFRDGTAITLGGRID--MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135
+E+F +G + + +L + ++ D G+Y + + +
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKIT 99
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 54.4 bits (130), Expect = 6e-09
Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 19/157 (12%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
K +++ + + + T G+Y +S + ++ V + T
Sbjct: 136 KGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKT 195
Query: 62 APDMR---------AEIICNVYANPPAKV--EWF--RDGTAITL------GGRIDMHVSS 102
+I+ + P + W+ R+G G ++ +
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255
Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139
L D + C A + ++++
Sbjct: 256 PDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAA 292
Score = 53.7 bits (128), Expect = 1e-08
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 21/131 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEI 69
+L + T + AG Y+ + ++ ++ + + E Q + + E+
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112
Query: 70 ICNVYA---NPPAKV-----EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
V PA W + I + ++ G Y
Sbjct: 113 HATVKFSGGKTPADNYELHYSWSKGEDVI-----------DTTQDITIQEFTADKNGVYT 161
Query: 122 CQASNNLGSSQ 132
+ S
Sbjct: 162 VKVWGESEDSA 172
Score = 36.7 bits (84), Expect = 0.004
Identities = 10/87 (11%), Positives = 21/87 (24%), Gaps = 14/87 (16%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK----VEWFRDGTAITLGGRIDMHVSSEK 104
VS++ + V + P W +D +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE----------NNT 51
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSS 131
+L V + G+Y + +
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMT 78
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 51.4 bits (123), Expect = 8e-09
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 141 PNIPVFQKSSRRLGPDGYRLVW--QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA 198
P+I S + ++L Q D + I++Y++K+R +++ W + +
Sbjct: 12 PSIHGQPSSGKS-----FKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN---- 62
Query: 199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+ LQ YE + A NR G+S P+
Sbjct: 63 ----KDHIILEHLQWTMGYEVQITAANRLGYSEPT 93
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 51.2 bits (123), Expect = 1e-08
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 134 FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVI 191
F LS P+IP + + R + L W+ D S I ++L++ E + + +
Sbjct: 11 FTTLSCEPDIPNPPRIANR-TKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYM 69
Query: 192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
S + + IT L + + A+N +G S S+ ++ T G
Sbjct: 70 GSQ---------KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 52.5 bits (126), Expect = 1e-08
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 19/133 (14%)
Query: 123 QASNNLGSSQ-----QFIQLSGIPNIP--VFQKSSRRLGPDGYRLVWQ-VDTYSGIIQ-Y 173
+ SS +P P S+ P + WQ +G I Y
Sbjct: 82 MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGY 141
Query: 174 LLKFRER--EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231
++ + E+ W + + ++ I L L T Y + A+N G
Sbjct: 142 IIYYSTDVNAEIHDWVIEPVVGN--------RLTHQIQELTLDTPYYFKIQARNSKGMGP 193
Query: 232 PSKAYVFATEGAE 244
S+A F T A
Sbjct: 194 MSEAVQFRTPKAH 206
Score = 43.3 bits (102), Expect = 2e-05
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 159 RLVWQ------VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
R+ W + Y ++++ + + T SY +TGL+
Sbjct: 22 RITWADNSLPKHQKITDSRYYTVRWKTNIP-ANTKYKNANAT--------TLSYLVTGLK 72
Query: 213 LFTQYEASVLAKNRFGWSRPSKAYVFAT-EGA 243
T YE SV+ S S T E
Sbjct: 73 PNTLYEFSVMVTKGRRSSTWSMTAHGTTFELV 104
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 50.6 bits (121), Expect = 1e-08
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKH 105
+PP + + + A + C P +EW++ G + +
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 106 SLLVRHI-----KDTDFGNYMCQASNNLGSS 131
SL I D G Y+C A N LG +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 42.5 bits (100), Expect = 1e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 54
G+Y C+A N +GE+ S + + V
Sbjct: 84 EGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 50.5 bits (121), Expect = 2e-08
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 159 RLVWQVDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
R+ WQ +Q Y ++++ + IP S + L Y
Sbjct: 35 RVSWQEPRCERPLQGYSVEYQLLNG-GELHRLNIP-------NPAQTSVVVEDLLPNHSY 86
Query: 218 EASVLAKNRFGWSRPSKAYVFATE 241
V A+++ GW R + +
Sbjct: 87 VFRVRAQSQEGWGREREGVITIES 110
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 50.3 bits (120), Expect = 2e-08
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 152 RLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWR----NIVIPSDGSLAGPIYTQS 205
RL + L W V + I+ + +++R + W+ NI + + +
Sbjct: 13 RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFT 72
Query: 206 YNITGLQLFTQYEASVLAKNRFGWSRPSKA--YVFATEGAE 244
++T L+ Y +LA ++ S + GA
Sbjct: 73 ASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 113
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 50.1 bits (120), Expect = 3e-08
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 159 RLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
+L W+ D + + Y + + + E + R G + I L T
Sbjct: 35 KLTWRTPASDPHGDNLTYSVFYTK-EGIARERVENTSHPGEM-------QVTIQNLMPAT 86
Query: 216 QYEASVLAKNRFGWSRPSKAYVFATE 241
Y V+A+N+ G S T+
Sbjct: 87 VYIFRVMAQNKHGSGESSAPLRVETQ 112
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 52.3 bits (125), Expect = 4e-08
Identities = 40/245 (16%), Positives = 64/245 (26%), Gaps = 44/245 (17%)
Query: 24 GLYQCIASN-NIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
C E + PPE P + C V + E
Sbjct: 76 IQLTCNILTFGQLEQNVYGITIISGLPPE----------KP---KNLSCIVNEGKKMRCE 122
Query: 83 WF--RDG---TAITLGGRIDMHVSSEKH--------SLLVRHIKDTDFGNYMCQASNNLG 129
W R+ T TL H ++ + +A N LG
Sbjct: 123 WDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG 182
Query: 130 ---SSQQFIQLS--GIPNIPV-FQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFRERE 181
S PN P + +L W I++Y +++R ++
Sbjct: 183 KVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKD 242
Query: 182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVF 238
+ W I S+ + L+ FT+Y + G WS S+
Sbjct: 243 A-STWSQIPPEDT-----ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 296
Query: 239 ATEGA 243
T
Sbjct: 297 ITYED 301
Score = 50.4 bits (120), Expect = 2e-07
Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 15/127 (11%)
Query: 123 QASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLK 176
N +G ++ I + + W S I+++ +
Sbjct: 378 TVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVL 437
Query: 177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY 236
+ +T W+ ++Y L Y +V G P
Sbjct: 438 SDKAPCITDWQQEDGTV---------HRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 488
Query: 237 VFATEGA 243
+ +
Sbjct: 489 AYLKQAP 495
Score = 39.6 bits (92), Expect = 6e-04
Identities = 37/254 (14%), Positives = 73/254 (28%), Gaps = 59/254 (23%)
Query: 26 YQCIASNNIGESTSKNFIVNVIY------PPEVSVEK----------QWIHTAPDMRAEI 69
A N +G+ TS + + +Y P +SV W + + +
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL 232
Query: 70 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ--ASNN 127
N+ W + +S + S V+ +K F Y+ +
Sbjct: 233 KYNIQYRTKDASTWSQIPPE---------DTASTRSSFTVQDLKP--FTEYVFRIRCMKE 281
Query: 128 LGSSQ--------QFIQLSGIPNIP----VFQKSSRRLGPDGYRLVWQ----VDTYSGII 171
G I P+ S G +LVW+ + I+
Sbjct: 282 DGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKIL 341
Query: 172 QYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231
Y + + + +N + + +T +Y A++ +N G S
Sbjct: 342 DYEVTLTRWK--SHLQNYTVNA------------TKLTVNLTNDRYLATLTVRNLVGKSD 387
Query: 232 PSKAYVFATEGAET 245
+ + A + T
Sbjct: 388 AAVLTIPACDFQAT 401
Score = 37.7 bits (87), Expect = 0.003
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 153 LGPDGYRLVWQ---VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNI 208
+G + L W VD +G I+ Y + +R + + S Y +
Sbjct: 507 VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG--NETAVNVDSS--------HTEYTL 556
Query: 209 TGLQLFTQYEASVLAKNRFGWSRPSK 234
+ L T Y + A G +
Sbjct: 557 SSLTSDTLYMVRMAAYTDEGGKDGPE 582
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 51.8 bits (123), Expect = 4e-08
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---K 80
C ++ G+ST+K F+ P V + + C V P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT 120
Query: 81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
V R L + +E + ++ N+ C+ +L
Sbjct: 121 VVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGANFSCRTELDLRP 167
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 52.5 bits (125), Expect = 4e-08
Identities = 40/246 (16%), Positives = 64/246 (26%), Gaps = 41/246 (16%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPPEV-----------SVEKQWIHTAPDMRAEIIC 71
G C + + PP VE +W E I
Sbjct: 307 EGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDI- 365
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTD---FGNYMC--QA 124
VY V + G + V S H L + +D NY +A
Sbjct: 366 -VY-----SVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEA 419
Query: 125 SNNLG----SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFR 178
N + S I + + W + + +Y + +R
Sbjct: 420 RNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYR 479
Query: 179 EREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
++ + + N+ S + L T Y V A + G SK + F
Sbjct: 480 KKGD-SNSYNVRRTE---------GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEF 529
Query: 239 ATEGAE 244
T E
Sbjct: 530 QTLSPE 535
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 48.8 bits (116), Expect = 6e-08
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 12/83 (14%)
Query: 67 AEIICNVYANPPAK---VEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 114
V K V+WF+ G + L D L + +
Sbjct: 22 ITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81
Query: 115 TDFGNYMCQASNNLGSSQQFIQL 137
G+Y C+ S L
Sbjct: 82 AFTGSYRCEVSTKDKFDCSNFNL 104
Score = 31.5 bits (71), Expect = 0.084
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
L + G Y+C S S NF + V
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCS-NFNLTV 106
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 48.1 bits (115), Expect = 7e-08
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 159 RLVWQ---VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
L W + IQ + + +R + +GS Q + I LQ
Sbjct: 22 MLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS------KQWHMIGHLQPE 75
Query: 215 TQYEASVLAKNRFGWSRPSKAYVFATE 241
T Y+ + N G S S + T+
Sbjct: 76 TSYDIKMQCFNEGGESEFSNVMICETK 102
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 49.2 bits (117), Expect = 8e-08
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 29 IASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT 88
+ S++ S + + E+ C +P +++W+ +G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
Query: 89 AITL-------GGRIDMH------VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
G R+D ++ + + + D G Y C+ASN+ +
Sbjct: 61 GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH 117
Score = 36.2 bits (83), Expect = 0.003
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPP 50
++ +D + + G Y+C ASN+ ++ V +
Sbjct: 91 TISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 48.6 bits (116), Expect = 8e-08
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 14/120 (11%)
Query: 129 GSSQQ--FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREEL 183
GSS F P IPV ++ +++ W +G I +Y+++ E
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 184 TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
W I T+ + L Y V + G S S++ + T
Sbjct: 64 NKWEMI---------YSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAV 114
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 48.5 bits (116), Expect = 9e-08
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 159 RLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
RL+WQ I+ Y + R + + + + Y TGL+ +
Sbjct: 45 RLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSAR-------QYTATGLKPESV 97
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y + A+ R GW ++A V TE
Sbjct: 98 YLFRITAQTRKGWGEAAEALVVTTE 122
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 48.2 bits (115), Expect = 9e-08
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGS 196
+P P+ Q + L W+ S Y+L+ + +R + + +
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNG-GQFREVYVGKE-- 64
Query: 197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
T + GL + Y A V A N+ G S SK V T
Sbjct: 65 ------T-MCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 49.8 bits (119), Expect = 1e-07
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDG 195
P+I + S ++ + +G I++Y ++R E +
Sbjct: 10 SSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 64
Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
S I GL+ T Y + A N G S A F T+
Sbjct: 65 S-----MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR 108
Score = 43.3 bits (102), Expect = 2e-05
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 123 QASNNLGSSQ-----QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLL 175
A N G + +F + + ++ D S I YL+
Sbjct: 86 AALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV 145
Query: 176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
++R + W+ + P + + L +YE V+A+N+ G S+ +
Sbjct: 146 RYRALS--SEWKPEI-------RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA-H 195
Query: 236 YVFAT 240
+VF T
Sbjct: 196 FVFRT 200
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 49.3 bits (117), Expect = 1e-07
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 13/136 (9%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEIICNVYANPPA- 79
C + ++ P+ + W + C V P
Sbjct: 64 TQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQP--VGENFTLSCRVPGAGPRA 120
Query: 80 --KVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQ 133
+ R + + V ++ N+ C+A +L
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGL 180
Query: 134 FIQLSGIPNIPVFQKS 149
F S + F S
Sbjct: 181 FENSSAPRELRTFSLS 196
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 50.2 bits (120), Expect = 2e-07
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 116
I C+ KV + G + VS L + ++ D
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLFFKKVQVED 312
Query: 117 FGNYMCQASNNLGSSQQFIQL 137
G Y C A + ++L
Sbjct: 313 GGVYTCYAMGETFNETLSVEL 333
Score = 39.4 bits (92), Expect = 7e-04
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
L +V ++ G+Y C A T + + V + ++ A D
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETL-SVELKVY-NFTLHGHHDTLNAAAD 352
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 48.0 bits (114), Expect = 2e-07
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 153 LGPDGYRLVWQVDTYSGIIQ-YLLKFREREELT---PWRNIVIPSDGSLAGPIYTQSYNI 208
L P ++ W VD IQ Y + +R+ L W+N+ +S +
Sbjct: 27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTE-------RSAVL 79
Query: 209 TGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
L+ YE V S++ T
Sbjct: 80 VNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 48.0 bits (114), Expect = 2e-07
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 129 GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN 188
GSS + + PN P ++ D + W D I Y L++ + +
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFIS 63
Query: 189 IVIPSDG-SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+ D + I Y + GLQ T+Y V A N+ G
Sbjct: 64 LYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE 109
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 48.8 bits (116), Expect = 2e-07
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 14/135 (10%)
Query: 7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM- 65
SL L + ++ G Y+ S S + + + V
Sbjct: 66 FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125
Query: 66 RAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQ 123
+ C+V A+ W G + S + +L V + + +Y C
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALG-----------NTLSSQPNLTVSWDPRISSEQDYTCI 174
Query: 124 ASNNLGSSQQFIQLS 138
A N + + +
Sbjct: 175 AENAVSNLSFSVSAQ 189
Score = 33.4 bits (76), Expect = 0.037
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 17/106 (16%)
Query: 76 NPPAKVEWFRDGTAI---------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
+ W + T++ T + ++ +SL + ++K D G+Y
Sbjct: 26 EKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSY 85
Query: 121 MCQASNNLGSSQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQV 164
Q S + L + S+ L
Sbjct: 86 RAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 47.3 bits (113), Expect = 2e-07
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
S + I + + L+WQ I++Y +K+ E+++ + +
Sbjct: 12 SQVVVIRQERAGQTSV-----SLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAV-- 64
Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242
T ++GL+ T+Y V A+ G R S+A T
Sbjct: 65 -------TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 46.9 bits (112), Expect = 2e-07
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L W + Y +++R P++ + + T Y+I GL F++Y
Sbjct: 25 TLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVD---------GVATTRYSIGGLSPFSEYA 75
Query: 219 ASVLAKNRFGWSRPSKA 235
VLA N G PS+A
Sbjct: 76 FRVLAVNSIGRGPPSEA 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 49.7 bits (119), Expect = 3e-07
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAIT---LGGRIDMHVSSEK 104
P + ++ M AE+ C + V W +GT +T RI +
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG-- 397
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL--SGIPN 142
+L ++ D G Y C SN++G++ L +G +
Sbjct: 398 -TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 42.4 bits (100), Expect = 6e-05
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPP 50
+L+ VT++ G+Y C+ SN++G +T+ + +NV
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVG-NTTASATLNVTGTHH 436
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 47.1 bits (112), Expect = 3e-07
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSL 197
P+I + S ++ + +G I++Y ++R E W +
Sbjct: 11 PSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGE-EVWHSKWYD----A 60
Query: 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET 245
I GL+ T Y + A N G S A F T+
Sbjct: 61 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVRE 108
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 49.4 bits (118), Expect = 3e-07
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG----TAITLGGRIDMHVSSEK 104
P + + ++ + AE+ C P + V+W + + RI +
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
+L H+ +D G Y C +N G+S L
Sbjct: 408 -TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 41.3 bits (97), Expect = 1e-04
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
+L+ V L G+Y C+ +N G +++ + +NV
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNV 441
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 47.0 bits (111), Expect = 4e-07
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRI----- 96
IY +S I + + + C ++ W + +
Sbjct: 4 GYRIYDVVLSPSHG-IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62
Query: 97 ---DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
+ +L + + +D G Y C AS+ L + + +
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 37.0 bits (85), Expect = 0.001
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
+L +D VT GLY C AS+ + + + V V P V+
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSG 119
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 46.3 bits (110), Expect = 4e-07
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
D RL W + ++++++E E++ N+ +P +SY++TGL+
Sbjct: 14 TEDSLRLSWTAPD-AAFDSFMIQYQESEKVGEAINLTVPGS--------ERSYDLTGLKP 64
Query: 214 FTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
T+Y S+ S P A F T G
Sbjct: 65 GTEYTVSIYGVKGGHRSNPLSA-EFTTGGH 93
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 49.2 bits (116), Expect = 5e-07
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 12/149 (8%)
Query: 99 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP 155
+++E + L V+ + N+ N LG S+ + + +
Sbjct: 341 GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINS 400
Query: 156 DGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
W + + + ++ + RN I T + L
Sbjct: 401 TVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAED-----STYHVAVDKLNP 455
Query: 214 FTQYEASVLAK--NRFGWSRPSKAYVFAT 240
+T Y V + WSR S T
Sbjct: 456 YTAYTFRVRCSSKTFWKWSRWSDEKRHLT 484
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 48.2 bits (114), Expect = 5e-07
Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
+L + VT +G Y C + + +V + S + D + C
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGIHLEC 140
Query: 72 NVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQASN 126
P +++W + + + ++ ++ + C +
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI--MRGSSGEGVSCTIRS 198
Query: 127 NLGSSQQFIQLSGIPNIPVFQKSSRRLG 154
+L ++ +S I + P F+ +
Sbjct: 199 SLLGLEKTASIS-IAD-PFFRSAQHHHH 224
Score = 32.8 bits (74), Expect = 0.070
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 23/170 (13%)
Query: 51 EVSVEKQWIHTAPDMRAEIICNVYANPPAK---VEWFRDGT-----------------AI 90
V I A++ C+++ A+ ++W +
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65
Query: 91 TLGGRIDMHVSSEKH---SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQ 147
GR + +L + ++ +D G Y+C + + ++L
Sbjct: 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH 125
Query: 148 KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
+ G L + + Q + E + V+ L
Sbjct: 126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGL 175
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 48.6 bits (116), Expect = 5e-07
Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 17/129 (13%)
Query: 122 CQASNNLGSSQ----QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYL 174
N +G S PV + + W S I+++
Sbjct: 78 LTVRNLVGKSDAAVLTIPACDFQATHPV-MDLKAFPKDNMLWVEWTTPRESVKKYILEWC 136
Query: 175 LKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
+ + +T W+ ++Y L Y +V G P
Sbjct: 137 VLSDKAPCITDWQQEDGTV---------HRTYLRGNLAESKCYLITVTPVYADGPGSPES 187
Query: 235 AYVFATEGA 243
+ +
Sbjct: 188 IKAYLKQAP 196
Score = 40.9 bits (96), Expect = 2e-04
Identities = 22/168 (13%), Positives = 40/168 (23%), Gaps = 31/168 (18%)
Query: 80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC--QASNNLGSSQQFIQL 137
+EW + + L ++ + Y+ G
Sbjct: 132 ILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE--SKCYLITVTPVYADGPGSPESIK 189
Query: 138 --------SGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYSGIIQ-YLLKFREREELTP 185
S P + + L W VD +G I+ Y + +R
Sbjct: 190 AYLKQAPPSKGPTVRTKKVGKNEA-----VLEWDQLPVDVQNGFIRNYTIFYRTIIG--N 242
Query: 186 WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+ + S Y ++ L T Y + A G
Sbjct: 243 ETAVNVDSS--------HTEYTLSSLTSDTLYMVRMAAYTDEGGKDGP 282
Score = 36.7 bits (85), Expect = 0.005
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ----VDTYSGIIQYLLKFREREELTPWRNIVIPS 193
S P+ S G +LVW+ + I+ Y + + + +N + +
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWK--SHLQNYTVNA 62
Query: 194 DGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET 245
+T +Y A++ +N G S + + A + T
Sbjct: 63 ------------TKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQAT 102
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 47.9 bits (114), Expect = 6e-07
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L W S II Y + E P + S Y +TGL+ Y+
Sbjct: 40 GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSS--------VGYYTVTGLEPGIDYD 91
Query: 219 ASVLAKNRFGWSRPS 233
SV G S P+
Sbjct: 92 ISVYTVKNGGESTPT 106
Score = 41.3 bits (97), Expect = 1e-04
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG 210
+GPD R+ W + +L+++ + + I + +T
Sbjct: 123 TNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPS--------DNAVVLTN 174
Query: 211 LQLFTQYEASVLAKNRFGWSRPSKAYV 237
L T+Y SV + S P +
Sbjct: 175 LLPGTEYVVSVSSVYEQHESTPLRGRQ 201
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 47.4 bits (112), Expect = 6e-07
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 12/113 (10%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEIICNVYANPPA- 79
C ++ ++ + V + PE ++ W + + C V P
Sbjct: 61 SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQP--VGKQLTLRCQVEGGAPRA 117
Query: 80 --KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
V R L + +E + ++ + C+ +L
Sbjct: 118 QLTVVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGAQFSCRTELDLRP 167
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 47.2 bits (112), Expect = 6e-07
Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 25/138 (18%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIH 60
+ L SL + +T Y+ + N + + F + V+ P + E
Sbjct: 53 VYLDTVSGSLTIYNLTSSDEDEYEMESPN---ITDTMKFFLYVLEMVSKPMIYWECS--- 106
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
A + C V +++ ++ + + +
Sbjct: 107 -----NATLTCEVLEGTDVELKLYQGKE-----------HLRSLRQKTMSYQWTNLRAPF 150
Query: 121 MCQASNNLGSSQQFIQLS 138
C+A N + + ++
Sbjct: 151 KCKAVNRVSQESEMEVVN 168
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 45.8 bits (109), Expect = 7e-07
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L W I Y L +++ E + I I SY + GL+ + Y
Sbjct: 35 LLSWTPPRSDTIANYELVYKDGEH-GEEQRITIEP---------GTSYRLQGLKPNSLYY 84
Query: 219 ASVLAKNRFGWSRPSKAYVFAT 240
+ A++ G + T
Sbjct: 85 FRLAARSPQGLGASTAEISART 106
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 45.8 bits (109), Expect = 7e-07
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W + + I Y+L+ E ++ +Y + L+ T+
Sbjct: 26 LQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY---------DGEDLAYTVKNLRRSTK 76
Query: 217 YEASVLAKNRFGWSRPSKAYVFAT 240
Y+ V+A N G S PS+ F T
Sbjct: 77 YKFKVIAYNSEGKSNPSEVVEFTT 100
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 45.9 bits (109), Expect = 7e-07
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
RL W+ + I + + F E R + + + L+
Sbjct: 35 RLSWRPPAEAKGNIQTFTVFFSR-EGDNRERALN-------TTQPGSLQLTVGNLKPEAM 86
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y V+A N +G S+ AT+
Sbjct: 87 YTFRVVAYNEWGPGESSQPIKVATQ 111
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 45.5 bits (108), Expect = 7e-07
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
S +P + + R + L W I+ Y +++ E+E + + + S
Sbjct: 9 STVPIMHQVSATMRSI-----TLSWPQPEQPNGIILDYEIRYYEKEH-NEFNSSMARSQ- 61
Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
T + I GL+ Y V A+ G+ + S F T
Sbjct: 62 -------TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL 100
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 45.8 bits (109), Expect = 8e-07
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L WQ Y+++ + W+ + A + T Y + GL+ T
Sbjct: 33 TLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTV--------ANHVKTTLYTVRGLRPNTI 84
Query: 217 YEASVLAKNRFGWSRPSKA 235
Y V A N G S PS
Sbjct: 85 YLFMVRAINPQGLSDPSPM 103
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 45.8 bits (108), Expect = 1e-06
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 67 AEIICNVYANPPA---KVEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 114
I V A ++WF+ G + L + H + + KD
Sbjct: 25 ITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84
Query: 115 TDFGNYMCQASNNLGSSQQFIQL------SGIPNIPVFQKS 149
GNY C+ + L PNI S
Sbjct: 85 NFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125
Score = 35.7 bits (82), Expect = 0.003
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
+ + + AG Y+C + + +F + V +
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSC-SFDLEVHESTGTT 116
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 45.2 bits (107), Expect = 1e-06
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 159 RLVWQV---DTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
L W + I + + +R + +G ++I+ LQ
Sbjct: 26 MLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD------RYWHSISHLQPE 79
Query: 215 TQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
T Y+ + N G S S + T+
Sbjct: 80 TSYDIKMQCFNEGGESEFSNVMICETKARS 109
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 47.5 bits (112), Expect = 1e-06
Identities = 32/276 (11%), Positives = 70/276 (25%), Gaps = 58/276 (21%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
L L V L +G Y C + + + V PPE +
Sbjct: 50 SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVH----LLVDVPPEEPQLSCFRK 105
Query: 61 TAPDMRAEIICNVYANPPAKVEWFRDG---TAITLGGRIDMHVSSEKHSLLVRHIKDTDF 117
+ ++C + T L R + +E ++ +
Sbjct: 106 SPLS---NVVC--------EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQY--SQES 152
Query: 118 GNYMC----------------QASNNLGSS----QQFIQLSGIPNIPVFQKSSRRLGPDG 157
+ C ++++GS Q F + P + + +
Sbjct: 153 QKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNP 212
Query: 158 YRLVWQ------VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGL 211
L ++ +++ L++R + ++ I
Sbjct: 213 RWLSVTWQDPHSWNSSFYRLRFELRYRAERS-KTFTTWMVKDLQH--------HCVIHDA 263
Query: 212 QLFTQYEASVLAKNRFG---WSRPSKAYVFATEGAE 244
++ + A+ FG WS S +
Sbjct: 264 WSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTES 299
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 44.7 bits (106), Expect = 2e-06
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSL 197
P+I + S ++ + +G I++Y ++R E W +
Sbjct: 10 PSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGE-EVWHSKWYD----A 59
Query: 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
I GL+ T Y + A N G S A F T+
Sbjct: 60 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 44.3 bits (105), Expect = 2e-06
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
I L+ F + + + + + S S +T L+ T YE ++A+N
Sbjct: 27 LPIEGILVTFGRKNDPSDETTVDLTSS--------ITSLTLTNLEPNTTYEIRIVARNGQ 78
Query: 228 GWSRPSKAYVFATEGAE 244
+S P F T E
Sbjct: 79 QYSPPVST-TFTTGSLE 94
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 44.6 bits (106), Expect = 2e-06
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 160 LVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
+ W+ + + + +Y L++ E + SY I GL T Y
Sbjct: 26 VNWEVPLSNGTDVTEYRLEWGGVE--GSMQICYCGP---------GLSYEIKGLSPATTY 74
Query: 218 EASVLAKNRFGWSRPSKAYVFAT 240
V A + G S+ T
Sbjct: 75 YCRVQALSVVGAGPFSEVVACVT 97
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 46.7 bits (111), Expect = 2e-06
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
W + Y ++ +E+ P + I + D S S ++GL + T+YE
Sbjct: 38 SAQWTPPN-VQLTGYRVRVTPKEKTGPMKEINLAPDSS--------SVVVSGLMVATKYE 88
Query: 219 ASVLAKNRFGWSRPSKAYVFATE 241
SV A SRP++ V E
Sbjct: 89 VSVYALKDTLTSRPAQGVVTTLE 111
Score = 43.2 bits (102), Expect = 3e-05
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
I + + TP + + P +SY ITGLQ T Y+ + N
Sbjct: 138 ETITGFQVDAVPANGQTPIQRTIKPD---------VRSYTITGLQPGTDYKIYLYTLNDN 188
Query: 228 GWSRPS 233
S P
Sbjct: 189 ARSSPV 194
Score = 39.4 bits (92), Expect = 5e-04
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 170 IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229
I Y++K+ + P + P ITGL+ T+Y V+A
Sbjct: 229 ITGYIIKYEKPGS-PPREVVPRP-------RPGVTEATITGLEPGTEYTIYVIALKNNQK 280
Query: 230 SRPSKAYV 237
S P
Sbjct: 281 SEPLIGRK 288
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 47.1 bits (112), Expect = 2e-06
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 18/126 (14%)
Query: 123 QASNNLGSS-----QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
N G S Q + ++ + R+ W + +L+++
Sbjct: 168 ITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTM-----RVTWAPPPSIDLTNFLVRY 222
Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
+ + I + +T L T+Y SV + S P +
Sbjct: 223 SPVKNEEDVAELSISPS--------DNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 274
Query: 238 FATEGA 243
+
Sbjct: 275 KTGLDS 280
Score = 44.0 bits (104), Expect = 2e-05
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L W S II Y + E P + S Y +TGL+ Y+
Sbjct: 113 GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSS--------VGYYTVTGLEPGIDYD 164
Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
SV+ G S P+
Sbjct: 165 ISVITLINGGESAPTTLTQQTAVPP 189
Score = 41.3 bits (97), Expect = 1e-04
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ I Y ++ R +P S +T L T+Y S++A N
Sbjct: 303 ATITGYRIRHHPEHFSGRPREDRVPHS--------RNSITLTNLTPGTEYVVSIVALNGR 354
Query: 228 GWSRPSKAYVFATEGA 243
S +T A
Sbjct: 355 EESPLLIG-QQSTVSA 369
Score = 40.6 bits (95), Expect = 2e-04
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 7/79 (8%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
+ W+ T I Y + ++ S L +Y
Sbjct: 21 TVSWERSTTPDITGYRITTTPTNG-QQGNSLEEVVHAD------QSSCTFDNLSPGLEYN 73
Query: 219 ASVLAKNRFGWSRPSKAYV 237
SV S P +
Sbjct: 74 VSVYTVKDDKESVPISDTI 92
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 44.6 bits (105), Expect = 2e-06
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 159 RLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
L W + + G + L+F EE + + G + + GL+ T
Sbjct: 33 ELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGY------ATRHVVEGLEPRT 86
Query: 216 QYEASVLAKNRFGWSRPSKAYVFAT 240
Y+ + + G S AT
Sbjct: 87 LYKFRLKVTSPSGEYEYSPVVSVAT 111
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 46.9 bits (110), Expect = 3e-06
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 7/120 (5%)
Query: 118 GNYMCQASNNLGSSQQFIQL--SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQY 173
G C SN G + Q + G+P P + L + W + + Y
Sbjct: 136 GVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIY 194
Query: 174 LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+++ R + P + + + +T ++ Y+ V A N G +
Sbjct: 195 VVQRRWNYGIHPSEDD--ATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252
Score = 43.0 bits (100), Expect = 5e-05
Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 34/243 (13%)
Query: 21 KLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------------SVEKQWIHTAPDMRAE 68
+ +G+ +C SN G + + P + +E +W
Sbjct: 133 ECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
+I V + D + ++++ L + + A N
Sbjct: 192 VIYVVQRRWNYGIHPSEDDA----THWQTVAQTTDERVQLTDIRPSRWY-QFRVAAVNVH 246
Query: 129 GSSQ-----QFIQLSGIPNIP-------VFQKSSRRLGPDGYRLVWQVDTYSG--IIQYL 174
G+ + + S P+ P + + G +VW + + Y
Sbjct: 247 GTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYK 306
Query: 175 LKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
+ + + + + S + LQ Y + A +G +R
Sbjct: 307 VFWSWMV--SSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS 364
Query: 235 AYV 237
A V
Sbjct: 365 AKV 367
Score = 41.1 bits (95), Expect = 2e-04
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 4/141 (2%)
Query: 100 VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 159
+ S K SL T+ + + +Q Q + G +
Sbjct: 362 LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVK 421
Query: 160 LVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA 219
+ W+ + +Y +++ S +G + + L +Y+
Sbjct: 422 VYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEAS----SGMTHENYIILQDLSFSCKYKV 477
Query: 220 SVLAKNRFGWSRPSKAYVFAT 240
+V S+ +
Sbjct: 478 TVQPIRPKSHSKAEAVFFTTP 498
Score = 37.2 bits (85), Expect = 0.004
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 159 RLVWQV---DTYSGIIQYLLKFREREELTPWRNIV-IPSDGSLAGPIYTQSYNITGLQLF 214
W++ + Y + + + + E + ++ S P + L+
Sbjct: 545 HFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPS 604
Query: 215 TQYEASVLAKNRFGWSRPS 233
T Y V G +
Sbjct: 605 TLYRLEVQVLTPGGEGPAT 623
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 45.9 bits (109), Expect = 3e-06
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 17/129 (13%)
Query: 124 ASNNLGSSQ------QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ----VDTYSGIIQY 173
A N +G+S +P + P+ + W ++ + Y
Sbjct: 81 AFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHY 140
Query: 174 LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+ ++ W N I + I F +Y V+A N G S +
Sbjct: 141 YVSWKRDIPAAAWENNNIF-------DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 193
Query: 234 KAYVFATEG 242
V G
Sbjct: 194 AEEVVGYSG 202
Score = 45.1 bits (107), Expect = 4e-06
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 141 PNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA 198
P + + + + W+ D S I+ Y ++F W
Sbjct: 9 PKLTGITCQADKA-----EIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPN--- 60
Query: 199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
T S + + + Y V+A N+ G S PS
Sbjct: 61 ----TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAH 93
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 44.6 bits (105), Expect = 3e-06
Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 67 AEIICNVYANPPAKVEWFR--------DGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDF 117
+ C + ++W + + + + H S+ + S+ V ++ D
Sbjct: 19 LTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE 78
Query: 118 GNYMCQASNN-LGSSQQFIQLSGIPNIPVFQKSSR 151
G Y C ++ + + + + + + S
Sbjct: 79 GVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH 113
Score = 32.3 bits (73), Expect = 0.049
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
S+ + VTL+ G+Y+C+ ++ ++K V V+ + + H P
Sbjct: 67 SITVPNVTLQDEGVYKCLHYSD--SVSTKEVKVIVLATMKGEFCRYPSHWRP 116
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 44.1 bits (104), Expect = 3e-06
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 67 AEIICNVYANPPAKVEWFRDGTAITLGGRID---------MHVSSEKHSLLVRHIKDTDF 117
A + C V N ++W + S + S+ V + +D
Sbjct: 24 AILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE 83
Query: 118 GNYMCQASNNLGSSQQ 133
G Y C + +
Sbjct: 84 GQYTCSLFTMPVKTSK 99
Score = 26.0 bits (57), Expect = 6.3
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
S+ + V+L G Y C + + V+ P
Sbjct: 72 SISVSDVSLSDEGQYTCSLFTM--PVKTSKAYLTVLGVP 108
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 44.0 bits (104), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
+ +I V + S L L W V ++ Y +K+ E+ P + +
Sbjct: 9 PAVSDIRVTRSSPSSL-----SLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSE 63
Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
+ + GL+ Y V A++ G+ + + T+
Sbjct: 64 N--------RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 44.3 bits (105), Expect = 3e-06
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
G I Y +++R+ + ++ S I GL T+Y V A
Sbjct: 49 GQITGYKIRYRKASRKSDVTETLVSGT--------QLSQLIEGLDRGTEYNFRVAALTIN 100
Query: 228 GWSRPSKAYVFATE 241
G + T
Sbjct: 101 GTGPATDWLSAETF 114
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 43.6 bits (103), Expect = 4e-06
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
++ W ++ + Y + + E +P + +P S + I+GL+
Sbjct: 25 KISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYS--------TATISGLKPGVD 76
Query: 217 YEASVLAKNRFGWSRPS 233
Y +V A + F
Sbjct: 77 YTITVYAYDTFFPGYEP 93
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 43.9 bits (104), Expect = 4e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
G+I Y + + + R++V S+++ GL+ +T+Y V A
Sbjct: 49 GVITQYSVAYEAVDGEDRGRHVVDGISRE------HSSWDLVGLEKWTEYRVWVRAHTDV 102
Query: 228 GWSRPSKAYVFATE 241
G S + T+
Sbjct: 103 GPGPESSPVLVRTD 116
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 43.2 bits (102), Expect = 5e-06
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
+ W + + + L + ++ I + D Y+I L+
Sbjct: 15 TDTTALITWMPPS-QPVDGFELTYGIKDVPGDRTTIDLTED--------ENQYSIGNLKP 65
Query: 214 FTQYEASVLAKNRFGWSRPSKAYV 237
T+YE S++++ S P+K
Sbjct: 66 DTEYEVSLISRRGDMSSNPAKETF 89
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 45.0 bits (106), Expect = 5e-06
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 21/131 (16%)
Query: 123 QASNNLG---SSQQFIQLSGI-----PNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQ 172
+A N LG S P+ S +L W + I++
Sbjct: 81 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL--SSILKLTWTNPSIKSVIILK 138
Query: 173 YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG---W 229
Y +++R ++ + W I S+ + L+ FT+Y + G W
Sbjct: 139 YNIQYRTKDA-STWSQIPPEDT-----ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYW 192
Query: 230 SRPSKAYVFAT 240
S S+ T
Sbjct: 193 SDWSEEASGIT 203
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 44.9 bits (105), Expect = 6e-06
Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 35/151 (23%)
Query: 8 YNRESLDLDRVT-LKLAGLYQCIASNNIGEST-----------------SKNFIVNVIYP 49
+ + L L + ++ +G Y C + + +K
Sbjct: 41 KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDA 100
Query: 50 PEVSVEKQWIHTAPDMRAE-------IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS 102
+ + + + C + ++W +DG+ I+ +++
Sbjct: 101 KKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT---IKWLKDGSIIS-------PLNA 150
Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
K++ + + G Y CQ + + Q
Sbjct: 151 TKNTWNLGNNAKDPRGTYQCQGAKETSNPLQ 181
Score = 34.1 bits (77), Expect = 0.021
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 68 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQASN 126
E+ C + ++ ++W ++G + L+++ + D G Y+C
Sbjct: 18 ELTCPLDSDEN--LKWEKNGQELP---------QKHDKHLVLQDFSEVEDSGYYVCYTPA 66
Query: 127 NLGSS 131
+ ++
Sbjct: 67 SNKNT 71
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 43.2 bits (102), Expect = 6e-06
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
GI+ Y + + E +P+ T Y +TGL T Y V A
Sbjct: 46 GILTGYRISWEEYNRTNTRVTHYLPNV--------TLEYRVTGLTALTTYTIEVAAMTSK 97
Query: 228 GWSRPSKA 235
G + S +
Sbjct: 98 GQGQVSAS 105
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 44.0 bits (103), Expect = 6e-06
Identities = 13/90 (14%), Positives = 24/90 (26%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
P V +K + F GR+ + + ++
Sbjct: 47 APTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFT 106
Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
V + D G Y N +G Q + +
Sbjct: 107 VEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 35.1 bits (80), Expect = 0.006
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47
+E +R ++ + G+Y N +GE N V VI
Sbjct: 96 VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV-NLTVKVI 138
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 42.9 bits (100), Expect = 6e-06
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
P+ + + W S I +Y+L++R + + W+ IP + SY I GL+
Sbjct: 20 PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPG 71
Query: 215 TQYEASVLAKNRFG 228
YE +++ ++G
Sbjct: 72 VVYEGQLISIQQYG 85
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 44.6 bits (106), Expect = 7e-06
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 159 RLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
L W G I Y+++ RE + + S+ + LQ
Sbjct: 23 TLTWDPPLLDGGSKIKNYIVEKRESTRKA-YSTVATNCH--------KTSWKVDQLQEGC 73
Query: 216 QYEASVLAKNRFGWSRPSKAYVFATEGA 243
Y VLA+N +G P++
Sbjct: 74 SYYFRVLAENEYGIGLPAETAESVKASE 101
Score = 37.3 bits (87), Expect = 0.002
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 124 ASNNLGSSQ-----QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYSGIIQYLL 175
A N G + ++ S P P + + + + L W+ D S I+ Y++
Sbjct: 81 AENEYGIGLPAETAESVKASERPLPPG-KITLMDVTRNSVSLSWEKPEHDGGSRILGYIV 139
Query: 176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
+ + + W + ITGL +Y V A+N G S P +
Sbjct: 140 EMQTKGS-DKWATCA---------TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQL 189
Query: 236 YVFAT 240
V
Sbjct: 190 SVPVI 194
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 45.2 bits (107), Expect = 7e-06
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 18/126 (14%)
Query: 123 QASNNLGSSQ--QFIQLSGIP---NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
+ S + +P ++ + R+ W + +L+++
Sbjct: 76 YTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTM-----RVTWAPPPSIDLTNFLVRY 130
Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
+ + I + +T L T+Y SV + S P +
Sbjct: 131 SPVKNEEDVAELSISPS--------DNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 182
Query: 238 FATEGA 243
+
Sbjct: 183 KTGLDS 188
Score = 44.4 bits (105), Expect = 1e-05
Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 19/126 (15%)
Query: 123 QASNNLGSS-----QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
+ S +Q L I ++ + W + I Y ++
Sbjct: 167 SSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSF-----TVHWIAPR-ATITGYRIRH 220
Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
R +P S +T L T+Y S++A N S
Sbjct: 221 HPEHFSGRPREDRVPHS--------RNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ 272
Query: 238 FATEGA 243
Sbjct: 273 STVSDV 278
Score = 43.7 bits (103), Expect = 2e-05
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 9/111 (8%)
Query: 123 QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREE 182
A N S I + P + W + Y + + E
Sbjct: 257 VALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPA-VTVRYYRITYGETGG 315
Query: 183 LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+P + +P + I+GL+ Y +V A G S S
Sbjct: 316 NSPVQEFTVPGS--------KSTATISGLKPGVDYTITVYAVTGRGDSPAS 358
Score = 41.7 bits (98), Expect = 9e-05
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 9/86 (10%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELT-PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
+ W+ T I Y + V+ +D S L +Y
Sbjct: 20 TVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHAD--------QSSCTFDNLSPGLEY 71
Query: 218 EASVLAKNRFGWSRPSKAYVFATEGA 243
SV S P +
Sbjct: 72 NVSVYTVKDDKESVPISDTIIPAVPP 97
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 42.8 bits (101), Expect = 8e-06
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 169 GIIQ-YLLKFRER--EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
G I Y+L + + W I D ++ I L L T Y + A+N
Sbjct: 39 GKITAYILFYTLDKNIPIDDWIMETISGD--------RLTHQIMDLNLDTMYYFRIQARN 90
Query: 226 RFGWSRPSKAYVFATE 241
G S +F T
Sbjct: 91 SKGVGPLSDPILFRTL 106
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 44.4 bits (105), Expect = 8e-06
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 159 RLVWQV--DTYSGIIQYLLKFREREELTPWR----NIVIPSDGSLAGPIYTQSYNITGLQ 212
L W V + I+ + +++R + W+ NI + + + ++T L+
Sbjct: 19 MLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK 78
Query: 213 LFTQYEASVLAKNRFGWSRPSKA 235
Y +LA ++ S
Sbjct: 79 PQHTYRFRILAVYSNNDNKESNT 101
Score = 41.3 bits (97), Expect = 1e-04
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 159 RLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
L W + + + I Y +R + I + +S+ I L+ T
Sbjct: 133 VLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIE-------GAHARSFKIAPLETAT 185
Query: 216 QYEASVLAKNRFGWSRPS 233
YE + + + S S
Sbjct: 186 MYEFKLQSFSAASASEFS 203
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 43.6 bits (102), Expect = 9e-06
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 17 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-AEIICNVYA 75
+ T Q + S ++G + ++ + S T + C V
Sbjct: 5 KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64
Query: 76 NPPAKVEWFRDGTAI--------TLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASN 126
+ + ++W RI + + + S+ + ++ D G Y C
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
Query: 127 NLGSSQ 132
+
Sbjct: 125 MPVRTA 130
Score = 27.8 bits (61), Expect = 1.8
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
S+ + V L G Y C + +V V+ P+
Sbjct: 104 SISISNVALADEGEYTCSIFTMPVRTAK--SLVTVLGIPQ 141
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 42.5 bits (100), Expect = 9e-06
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 159 RLVWQVDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
+ W S + Y + + E +P + +P S + I+GL Y
Sbjct: 22 LISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSS--------TATISGLSPGVDY 73
Query: 218 EASVLAKNRFGWSRPSKA 235
+V A
Sbjct: 74 TITVYAWGEDSAGYMFMY 91
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 159 RLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ W+ I Y L + E+ +++ + + SY I GL+ +T+
Sbjct: 35 TVTWETPVSGNGEIQNYKLYYMEKGT-DKEQDVDVS----------SHSYTINGLKKYTE 83
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y V+A N+ G + T
Sbjct: 84 YSFRVVAYNKHGPGVSTPDVAVRTL 108
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
G I Y ++ R+ + + Y TGL+ +QY V A
Sbjct: 59 GFITGYKIRHRKTTR--RGEMETLEPN--------NLWYLFTGLEKGSQYSFQVSAMTVN 108
Query: 228 GWSRPSKAYVFATE 241
G PS Y T
Sbjct: 109 GTGPPSNWYTAETP 122
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 44.4 bits (104), Expect = 1e-05
Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 43/253 (16%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
S+ + L I + E + PPE + C
Sbjct: 66 SVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-------------LSC 112
Query: 72 NVYANPPAKVEWF--RDG---TAITLGGRIDMHVSSEKHSLLVRHI-----KDTDFGNYM 121
V + EW R+ T TL H ++ + T + +
Sbjct: 113 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 172
Query: 122 C---QASNNLG---SSQQFIQLSGI--PNIPVFQK-SSRRLGPDGYRLVWQVDTYSG--I 170
+A N LG S PN P + +L W + I
Sbjct: 173 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII 232
Query: 171 IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG-- 228
++Y +++R ++ + W I S S+ + L+ FT+Y + G
Sbjct: 233 LKYNIQYRTKDA-STWSQIPPEDTAST-----RSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
Query: 229 -WSRPSKAYVFAT 240
WS S+ T
Sbjct: 287 YWSDWSEEASGIT 299
Score = 34.4 bits (78), Expect = 0.027
Identities = 21/169 (12%), Positives = 37/169 (21%), Gaps = 15/169 (8%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC--QASNNLGSSQQF 134
+ W + I + + + S + + C L +
Sbjct: 39 NANYIVWKTNHFTI---PKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYG 95
Query: 135 IQLS-GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELTPWRNIVIP 192
I + G+P S R W + + + LK + +
Sbjct: 96 ITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATH--KFADCKAK 153
Query: 193 SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
D T F E V A+N G
Sbjct: 154 RDTP------TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY 196
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 41.7 bits (98), Expect = 2e-05
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 21/103 (20%)
Query: 141 PNIPVFQKSSRRLGPDGYRLVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
++ + +K R+L L W G + Y L ++E
Sbjct: 14 LSLKLVKKEPRQL-----ELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM---------- 58
Query: 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
+ +T LQ T Y V G S + F T
Sbjct: 59 ---VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 42.0 bits (99), Expect = 2e-05
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ W ++ + Y++ + + + S + Y+I L+ +
Sbjct: 34 IMSWTPPLNPNIVVRGYIIGYGVGSP--YAETVRVDSK--------QRYYSIERLESSSH 83
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y S+ A N G P
Sbjct: 84 YVISLKAFNNAGEGVPLYESATTRS 108
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 41.3 bits (97), Expect = 2e-05
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
+ W + + I Y + + + + +P + S ITGL +Y
Sbjct: 19 TVSWTPPS-ATITGYRITYTPSNGPGEPKELTVPPSST--------SVTITGLTPGVEYV 69
Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
SV A S P T G
Sbjct: 70 VSVYALKDNQESPPLVG-TQTTGGH 93
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 41.7 bits (98), Expect = 2e-05
Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L W YLL F + I++P S+ + GL T Y
Sbjct: 25 LLTWTEPP-VRPAGYLLSFHTPGG--QTQEILLPGG--------ITSHQLLGLFPSTSYN 73
Query: 219 ASVLAKNRFGWSRPSKAYVFATEGAE 244
A + A P F T G
Sbjct: 74 ARLQAMWGQSLLPPVST-SFTTGGLR 98
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 43.1 bits (101), Expect = 2e-05
Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 10/130 (7%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAE 68
S+ + + G Y+C+ ++ + + V + +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 69 IICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQ 123
IIC+ P + W +G + + S L T ++MC
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD--FNMTTNHSFMCL 183
Query: 124 ASNNLGSSQQ 133
Q
Sbjct: 184 IKYGHLRVNQ 193
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 170 IIQYLLKFREREE----LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
I Y + + + + P + +++ + I L+ Y +V A+N
Sbjct: 129 ITAYEVCYGLVNDDNRPIGPMKKVLVD-------NPKNRMLLIENLRESQPYRYTVKARN 181
Query: 226 RFGWSRPSKAYVFAT 240
GW +A +
Sbjct: 182 GAGWGPEREAIINLA 196
Score = 41.7 bits (98), Expect = 8e-05
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 170 IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229
+ Y +K+ + + + ++ S S +T L + YE V A G
Sbjct: 33 PMGYRVKYWIQGD-SESEAHLLDSK--------VPSVELTNLYPYCDYEMKVCAYGAQGE 83
Query: 230 SRPSKAYVFATE 241
S T
Sbjct: 84 GPYSSLVSCRTH 95
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
G +Q Y + + + + + N L + GL+ F+ Y +V N
Sbjct: 45 GHLQGYRIYYWKTQSSSKR-NRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGK 103
Query: 228 GWSRPSKAYVFAT 240
G S VF T
Sbjct: 104 GEGPASPDRVFNT 116
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 41.5 bits (97), Expect = 3e-05
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ Y + + ++++ + + + + L+ Y A V A+
Sbjct: 55 PELYGYEVLISSTGKDGKYKSVYVGEE---------TNITLNDLKPAMDYHAKVQAEYNS 105
Query: 228 GWSRPSKAYVFATEGAE 244
PS+A +F T E
Sbjct: 106 IKGTPSEAEIFTTLSCE 122
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 42.4 bits (99), Expect = 4e-05
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 19/127 (14%)
Query: 123 QASNNLG---SSQQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVWQVDTY-SGIIQYLLK 176
+ +++LG S + P P K+ + ++ W+ + +Q+ ++
Sbjct: 87 RINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIR 146
Query: 177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG------WS 230
+ + W+ + ++S ++ L Y V K G WS
Sbjct: 147 YGLSGKEVQWKMYEV-------YDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWS 199
Query: 231 RPSKAYV 237
P+ V
Sbjct: 200 NPAYTVV 206
Score = 26.6 bits (58), Expect = 7.4
Identities = 6/69 (8%), Positives = 15/69 (21%), Gaps = 3/69 (4%)
Query: 172 QYLLKFREREELTPWRNIVIPSDGSLAGPIYTQ---SYNITGLQLFTQYEASVLAKNRFG 228
L++ + P + + + L + Y + + G
Sbjct: 34 TLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLG 93
Query: 229 WSRPSKAYV 237
V
Sbjct: 94 SLDSPPTCV 102
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 40.8 bits (95), Expect = 4e-05
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 42 FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRDGTAI--------T 91
F+ + P+++V+ + C+ ++ P W D A+
Sbjct: 3 FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYA 62
Query: 92 LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ L +R+++ T G Y C SN+ GSS
Sbjct: 63 HLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
EL+ L L V G YQC+ SN+ G S S + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 42.8 bits (99), Expect = 5e-05
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 11/116 (9%)
Query: 47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
+ VE W AP + C+ + W D + V +
Sbjct: 4 LKKDVYVVELDWYPDAPGEMVVLTCDTP--EEDGITWTLDQS---------SEVLGSGKT 52
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVW 162
L ++ + D G Y C + S + I + P +
Sbjct: 53 LTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLR 108
Score = 32.8 bits (73), Expect = 0.075
Identities = 30/268 (11%), Positives = 63/268 (23%), Gaps = 56/268 (20%)
Query: 5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA-P 63
E+L + ++L + AG Y C GE S + ++ + P
Sbjct: 45 EVLGSGKTLTIQVKEFGDAGQYTCHKG---GEVLSHSLLLLHKKEDGIWSTDILKDQKEP 101
Query: 64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS----------------- 106
+ + C W+ + L + S
Sbjct: 102 KNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGD 161
Query: 107 -------------LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS----GIPNIPVFQKS 149
+++ M A + L Q P+ P +
Sbjct: 162 NKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQL 221
Query: 150 SRRLGPDGYRLVWQ----VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQS 205
+ W+ T + + + + + +D +
Sbjct: 222 KPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKT--------- 272
Query: 206 YNITGLQLFTQYEASVLAKNRFG---WS 230
+ SV A++R+ WS
Sbjct: 273 --SATVICRKNASISVRAQDRYYSSSWS 298
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 42.1 bits (98), Expect = 5e-05
Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 24/161 (14%)
Query: 97 DMHVSSEKHSLLVRHIKDTDFGNY--MCQASNNLG---SSQQFIQL--SGIPNIPVFQKS 149
D +++ + + QA N LG S + + P+ Q
Sbjct: 58 DCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQAL 117
Query: 150 SRRLG-----PDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIY 202
P L W+ + + L+++ + + W + P
Sbjct: 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHL-------PSS 170
Query: 203 TQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVFAT 240
+ + GL Y + WS S
Sbjct: 171 KDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP 211
Score = 27.1 bits (59), Expect = 4.6
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 162 WQVDTYSGI-IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEAS 220
W+ + + ++LK ++ IP + S L L+
Sbjct: 26 WEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQ-NNCSIPRKNLLLYQYMAIW 84
Query: 221 VLAKNRFGWSRPSKAYVFATE 241
V A+N G S K + +
Sbjct: 85 VQAENMLGSSESPKLCLDPMD 105
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 40.4 bits (95), Expect = 6e-05
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 23/117 (19%)
Query: 129 GSSQQFIQLS--------GIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFR 178
GSS + L P + R + L W D S +I+Y+L+
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAI-----NLTWTKPFDGNSPLIRYILEMS 58
Query: 179 EREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
E PW ++ D S + GL Y+ + A N G + SK
Sbjct: 59 ENN--APWTVLLASVDPK------ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 107
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 40.0 bits (94), Expect = 6e-05
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 159 RLVWQ---VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
L W + +G I Y + FR+ +NI + +TGL+
Sbjct: 26 ELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT-----------DTRFTLTGLKPD 74
Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
T Y+ V A G S + T
Sbjct: 75 TTYDIKVRAWTSKGSGPLSPSIQSRT 100
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 40.1 bits (94), Expect = 7e-05
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
PD ++ W ++ Y L + L P +++ +P S + LQ
Sbjct: 19 ETPDSLQVSWTPPL-GRVLHYWLTYAPASGLGPEKSVSVPGARS--------HVTLPDLQ 69
Query: 213 LFTQYEASVLAKNRFGWSRPSKA 235
T+Y V A G S A
Sbjct: 70 AATKYRVLVSAIYAAGRSEAVSA 92
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 40.0 bits (94), Expect = 7e-05
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 160 LVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W+ GI YL+++ W P+ + + L +
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEE-WVPAN-------KEPVERCGFTVKDLPTGAR 78
Query: 217 YEASVLAKNRFGWSRPSKA 235
V+ N G S P+
Sbjct: 79 ILFRVVGVNIAGRSEPATL 97
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 41.8 bits (97), Expect = 8e-05
Identities = 33/242 (13%), Positives = 58/242 (23%), Gaps = 34/242 (14%)
Query: 24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC--------NVYA 75
C + + YPP + + + +IC ++
Sbjct: 73 AFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCL-MNLTTSS-LICQWEPGPETHLPT 130
Query: 76 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM--CQASNNLG---S 130
+ K R +D + + + N QA N LG S
Sbjct: 131 SFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMS 190
Query: 131 SQQFIQLSGI-----PNIPVFQKSSRRLGPDGYRLVWQ----VDTYSGIIQYLLKFRERE 181
Q + + P + S P L + L+ + +
Sbjct: 191 PQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQR 250
Query: 182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVF 238
W + P+ Y + GL T Y + WS S +
Sbjct: 251 GEASWALVGP-------LPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLEL 303
Query: 239 AT 240
T
Sbjct: 304 RT 305
Score = 41.1 bits (95), Expect = 2e-04
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 6/172 (3%)
Query: 74 YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN---LGS 130
+ +P ++ W G + + +++ + + H+ T C +
Sbjct: 30 HLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQ-AFLSCSLNWGNSLQIL 88
Query: 131 SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELTPWRNI 189
Q ++ P IP L W+ + + + LK + +
Sbjct: 89 DQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGD 148
Query: 190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
I G S L L+ V A+N G S + + +
Sbjct: 149 SILDCVPKDGQ-SHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMD 199
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 39.7 bits (93), Expect = 9e-05
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
S + Y + + E +P + +P S + I+GL Y +V A +
Sbjct: 30 SSVSYYRITYGETGGNSPVQEFTVPGSSS--------TATISGLSPGVDYTITVYAYYSY 81
Query: 228 GWSRPS 233
S
Sbjct: 82 YDLYYS 87
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 40.0 bits (94), Expect = 9e-05
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ W + I + +++++ +++ W S S ITGL+
Sbjct: 35 YVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS------RLSVEITGLEKGIS 88
Query: 217 YEASVLAKNRFGWSRPSKA 235
Y+ V A N G S PS
Sbjct: 89 YKFRVRALNMLGESEPSAP 107
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.4 bits (96), Expect = 1e-04
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 15/136 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASN------NIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-D 64
SL + ++ G Y + ++ + +I P++ + P
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
+ + + A PP W + + + SSE L + + N CQ
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPLDP---ETTRSSE---LTLTPRPEDHGTNLTCQM 196
Query: 125 SNNLG--SSQQFIQLS 138
++++ +QL+
Sbjct: 197 KRQGAQVTTERTVQLN 212
Score = 28.3 bits (62), Expect = 1.8
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 19/75 (25%)
Query: 72 NVYANPPAKVEWFRDGTAITLGGRIDMH-------------------VSSEKHSLLVRHI 112
+ Y++PP V WFRDG + + V + SL +
Sbjct: 30 SWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA 89
Query: 113 KDTDFGNYMCQASNN 127
+ D G+Y +
Sbjct: 90 RMEDTGSYFFRVERG 104
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 39.8 bits (93), Expect = 1e-04
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ Y ++++ + T SY +TGL+ T YE SV+
Sbjct: 41 TDSRYYTVRWKTNIPANTKYKNANAT---------TLSYLVTGLKPNTLYEFSVMVTKGR 91
Query: 228 GWSRPSKAYVFATE 241
S S T
Sbjct: 92 RSSTWSMTAHGTTF 105
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W G I Y ++ E+ R + ++ L
Sbjct: 28 LRWGPPLVDGGSPISCYSVEMSPIEK-DEPREVY---------QGSEVECTVSSLLPGKT 77
Query: 217 YEASVLAKNRFGWSRPSKAYVFAT 240
Y + A N+ G+ S+ T
Sbjct: 78 YSFRLRAANKMGFGPFSEKCDITT 101
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.8 bits (92), Expect = 1e-04
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 12/84 (14%)
Query: 67 AEIICNVYANPPAK---VEWFRD---GTAITLGGRIDMHVSSEKHS------LLVRHIKD 114
A ++ V ++WF+ G R S S L + +
Sbjct: 30 AVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL 89
Query: 115 TDFGNYMCQASNNLGSSQQFIQLS 138
D G Y + +
Sbjct: 90 GDRGYYRLEVKAKDTCDSCGFNID 113
Score = 29.4 bits (65), Expect = 0.49
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49
L + +V L G Y+ S F ++V P
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDVEAP 117
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 39.5 bits (92), Expect = 1e-04
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
+ W + Y + + E +P + +P S + I+GL+ Y
Sbjct: 46 LISWDAPA-VTVRYYRITYGETGGNSPVQEFTVPGSKS--------TATISGLKPGVDYT 96
Query: 219 ASVLAKNRFGWSRPS 233
+V A
Sbjct: 97 ITVYAVTGLRLMLAG 111
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 39.7 bits (93), Expect = 1e-04
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 169 GIIQ-YLLKFREREELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
G+I+ Y + +RE + + + + + G ++ Y + L+ F QY V A N
Sbjct: 46 GVIRGYQIGYRENSPGSNGQYSIVEMKATGD------SEVYTLDNLKKFAQYGVVVQAFN 99
Query: 226 RFGWSRPSKAYVFAT 240
R G S T
Sbjct: 100 RAGTGPSSSEINATT 114
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 38.9 bits (91), Expect = 2e-04
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 10/79 (12%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
R+ W+ + + + E P + S + L T Y
Sbjct: 25 RVFWEGAP-RPVRLVRVTYVSSEG-GHSGQTEAPGN--------ATSAMLGPLSSSTTYT 74
Query: 219 ASVLAKNRFGWSRPSKAYV 237
V G S V
Sbjct: 75 VRVTCLYPGGGSSTLTGRV 93
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 41.1 bits (95), Expect = 2e-04
Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 35/214 (16%)
Query: 48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
PPEV +E + ++ +P K ++ + + +S
Sbjct: 103 GPPEVHLEAEDKAI----------VIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE 152
Query: 108 LVR------HIKDTDFGNYMC---QASNNLG------SSQQFIQLSGIPNIPVFQKSSRR 152
+ I C +A+ S I+ + +P +
Sbjct: 153 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 212
Query: 153 LGPDGYRLVWQVDTYSG--IIQYLLKFRER---EELTPWRNIVIPSDGSLAGPIYTQSYN 207
+ Y L W + +Q+L F +R L W+ I + TQ
Sbjct: 213 VQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVK-----TTQCVF 267
Query: 208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
+ Y V A + S S+ F TE
Sbjct: 268 PQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 301
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 169 GIIQ-YLLKFREREELT-PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR 226
I++ Y +++ + + + S S + L TQY V A N
Sbjct: 45 KIVESYQIRYWAAHDKEEAANRVQVTSQ--------EYSARLENLLPDTQYFIEVGACNS 96
Query: 227 FGWSRPSKAYVFATE 241
G PS T+
Sbjct: 97 AGCGPPSDMIEAFTK 111
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 160 LVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ W+ +G+ Y+L++ E W I + ITGL +
Sbjct: 26 MRWRPPDHIGAAGLDGYVLEYCF-EGTEDWIVAN-------KDLIDKTKFTITGLPTDAK 77
Query: 217 YEASVLAKNRFGWSRPSKA 235
V A N G S P
Sbjct: 78 IFVRVKAVNAAGASEPKYY 96
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.2 bits (91), Expect = 2e-04
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 66 RAEIICNVYANPPAKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDT 115
A ++ WF +G + R + +H L++ +K
Sbjct: 25 DAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82
Query: 116 DFGNYMCQASNNLGSS 131
D G + + + S
Sbjct: 83 DSGALVGFSCPGVQDS 98
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 39.1 bits (91), Expect = 2e-04
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
S + Y +++R + + + SY TGL+ T YE SV+
Sbjct: 51 SEVRLYTVRWRTSFSASAKYKSEDTT---------SLSYTATGLKPNTMYEFSVMVTKNR 101
Query: 228 GWSRPSKAYVFATEGA 243
S S T A
Sbjct: 102 RSSTWSMTAHATTYEA 117
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 38.8 bits (91), Expect = 2e-04
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
G +Q Y L E +NI + SY + GL+ FT+Y LA NR+
Sbjct: 36 GPVQGYRLFCTEVST-GKEQNIEVD----------GLSYKLEGLKKFTEYSLRFLAYNRY 84
Query: 228 GWSRPSKAYVFAT 240
G + T
Sbjct: 85 GPGVSTDDITVVT 97
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 38.9 bits (91), Expect = 2e-04
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 159 RLVWQ-VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ W+ + +G IQ Y + + + +Q I L
Sbjct: 36 LVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVAD-------SQITTIGNLVPQKT 88
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y VLA G S T+
Sbjct: 89 YSVKVLAFTSIGDGPLSSDIQVITQ 113
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 38.9 bits (91), Expect = 2e-04
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W G I Y ++ +++ + W + + S IT L + +
Sbjct: 36 LTWTPPKDDGNAAITGYTIQKADKKSME-WFTV--------IEHYHRTSATITELVIGNE 86
Query: 217 YEASVLAKNRFGWSRPSKA 235
Y V ++N G S +
Sbjct: 87 YYFRVFSENMCGLSEDATM 105
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 39.0 bits (91), Expect = 2e-04
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 12/85 (14%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ W + + Y + + + I + + Y I L +
Sbjct: 44 VVSWTPPENQNIVVRGYAIGYGIGS--PHAQTIKVDYK--------QRYYTIENLDPSSH 93
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y ++ A N G P
Sbjct: 94 YVITLKAFNNVGEGIPLYESAVTRP 118
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 38.8 bits (90), Expect = 2e-04
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 155 PDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
P G L W + Y+L+ R+ + W + A + GL
Sbjct: 20 PRGVLLHWDPPELVPKRLDGYVLEGRQGSQ--GWEVL------DPAVAGTETELLVPGLI 71
Query: 213 LFTQYEASVLAKNRFGWSRPSKAYVFATEG 242
YE ++A S PS +T G
Sbjct: 72 KDVLYEFRLVAFAGSFVSDPSNTANVSTSG 101
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 40.6 bits (95), Expect = 2e-04
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
+ W + + LLK+ + Y++ L+ ++YE
Sbjct: 32 FVEWTPPR-AKVDFILLKYGLVGGEGGKTTFRLQPP--------LSQYSVQALRPGSRYE 82
Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
S+ A S S A
Sbjct: 83 VSISAVRGTNESDASSTQFTTEIDA 107
Score = 38.3 bits (89), Expect = 0.001
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 17/116 (14%)
Query: 123 QASNNLGSSQ----QFIQLSGIP-NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
A S QF P N+ V +++ L L W + + +Y + +
Sbjct: 86 SAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSL-----DLEWDN-SEAEAQEYKVVY 139
Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
+V G T +T L T+Y + A S P+
Sbjct: 140 STLAGEQYHEVLVPKGIGP------TTKTTLTDLVPGTEYGVGISAVMNSKQSIPA 189
Score = 34.8 bits (80), Expect = 0.019
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L+W + I Y + F + +P D SY +T L+ +Y
Sbjct: 214 SLIWTKAS-GPIDHYRITFTPSS--GISSEVTVPRD--------RTSYTLTDLEPGAEYI 262
Query: 219 ASVLAKNRFGWSRPSKAYVF 238
S+ A+ S S F
Sbjct: 263 ISITAERGRQQSLESTVDAF 282
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 38.9 bits (91), Expect = 3e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ I ++L++ + ++I L+ +S + L FT Y + N
Sbjct: 46 TSISRWLVEAQVGVVGEGEEWLLIHQ---LSNEPDARSMEVPDLNPFTCYSFRMRQVNIV 102
Query: 228 GWSRPSKA 235
G S PS+
Sbjct: 103 GTSPPSQP 110
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.8 bits (94), Expect = 3e-04
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 45 NVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
P Q + AP+ R + C + + A W + S
Sbjct: 496 ECPNPKPDKAPLQKVSLAPNSRYYLSCPM-ESRHATYSWRHKENVEQ---SCEPGHQSPN 551
Query: 105 HSLLVRHIKDTDFGNYMCQASNN 127
L + ++ +G+Y C+A
Sbjct: 552 CILFIENLTAQQYGHYFCEAQEG 574
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 39.9 bits (93), Expect = 3e-04
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 12/129 (9%)
Query: 15 LDRVTLKLAGLYQCIASNNIGESTSKNF----IVNVIYPPEVSVEKQWIHTAPDMRAEII 70
+D + AG YQC + + + P +S + + + P +
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD-RGLVLMPGENISLT 126
Query: 71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 129
C+ P + ++G H S E + + + G Y C N
Sbjct: 127 CSSAHIPFDRFSLAKEGELSLP-----QHQSGEHPANFSLGPVDLNVSGIYRCYGWYN-R 180
Query: 130 SSQQFIQLS 138
S + S
Sbjct: 181 SPYLWSFPS 189
Score = 26.8 bits (59), Expect = 5.6
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
++ T +G R+ + ++ H+ G Y CQ +
Sbjct: 42 MIIKNSTYREIGRRLKFW-NETDPEFVIDHMDANKAGRYQCQYRIGHYRFR 91
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 38.1 bits (89), Expect = 4e-04
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+L W D S I ++++++ + + G TQ+ L +
Sbjct: 34 QLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG-------TQTTAQLNLSPYVN 86
Query: 217 YEASVLAKNRFGWSRPSKA-YVFATEGAE 244
Y V+A N G S PS+A + T+ +E
Sbjct: 87 YSFRVMAVNSIGKSLPSEASEQYLTKASE 115
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 39.4 bits (91), Expect = 4e-04
Identities = 15/154 (9%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI----PVFQKSSRRLGPD 156
++ + + ++ Q + +Q Q+ + N+ + +L
Sbjct: 92 EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 151
Query: 157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W + +++L+++R + W + +++ + +
Sbjct: 152 QLELNWNNRFLNHCLEHLVQYRTDWD-HSWTEQSVDY---------RHKFSLPSVDGQKR 201
Query: 217 YEASVLAKNRFG------WSRPSKAYVFATEGAE 244
Y V ++ WS S + + ++
Sbjct: 202 YTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSK 235
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 37.0 bits (85), Expect = 5e-04
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
S I +Y+L++R + + W+ IP + SY I GL+ YE +++ ++
Sbjct: 10 SHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPGVVYEGQLISIQQY 61
Query: 228 G 228
G
Sbjct: 62 G 62
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 39.6 bits (91), Expect = 7e-04
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 156 DGYRLVWQV-DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
D Y L W+ I + + + R++ W++ + + S + L+
Sbjct: 334 DSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQN------AHSMALPALEPS 387
Query: 215 TQYEASVLAKNRFG-----WSRPSKAYVFATE 241
T+Y A V + WS S+A + TE
Sbjct: 388 TRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419
Score = 30.3 bits (67), Expect = 0.56
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 18/125 (14%)
Query: 115 TDFGNYMCQASNNLGSSQQFIQLSGI-PNIPVFQKSSRRLGPDGYRLVWQVDT------- 166
TD + Q LG+ + P P D + L W V
Sbjct: 82 TDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPR--DLQISTDQDHFLLTWSVALGSPQSHW 139
Query: 167 -YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
G +++ + ++ ++ I++ + + L + Y A V +
Sbjct: 140 LSPGDLEFEVVYKRLQDSWEDAAILLSNTSQA-------TLGPEHLMPSSTYVARVRTRL 192
Query: 226 RFGWS 230
G
Sbjct: 193 APGSR 197
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 37.4 bits (87), Expect = 7e-04
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 144 PVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPI 201
Q S R W ++ I +Y++++ W + S+
Sbjct: 12 RNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGS-KMWASQRAASN------- 63
Query: 202 YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
I L + T Y V A G S + T
Sbjct: 64 ---FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI 100
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 38.9 bits (90), Expect = 7e-04
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 25/151 (16%)
Query: 105 HSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGI-----PNIPVFQKSSRRLGPD 156
++ M A+N +G S + ++ ++ I P +
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 157 GYRLVWQ------VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG 210
+ W + T + Y ++ + + W + I
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-AEWEIHFAGQQTE---------FKILS 171
Query: 211 LQLFTQYEASVLAKNRFG-WSRPSKAYVFAT 240
L +Y V K G WS S A
Sbjct: 172 LHPGQKYLVQVRCKPDHGYWSAWSPATFIQI 202
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 38.6 bits (89), Expect = 7e-04
Identities = 15/154 (9%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI----PVFQKSSRRLGPD 156
++ + + ++ Q + +Q Q+ + N+ + +L
Sbjct: 54 EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 113
Query: 157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W + +++L+++R + W + +++ + +
Sbjct: 114 QLELNWNNRFLNHCLEHLVQYRTDWD-HSWTEQSVDY---------RHKFSLPSVDGQKR 163
Query: 217 YEASVLAKNRFG------WSRPSKAYVFATEGAE 244
Y V ++ WS S + + ++
Sbjct: 164 YTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSK 197
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 37.3 bits (86), Expect = 9e-04
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
RL W+ +LL+F T + L P S + L+
Sbjct: 21 TTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS 79
Query: 214 FTQYEASVLAKNRFGWSRP 232
T Y ++ +
Sbjct: 80 GTLYSLTLYGLRGPHKADS 98
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 37.2 bits (86), Expect = 9e-04
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEK 56
+ L +L + +V + Y G + V+ P P + +EK
Sbjct: 66 VRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEK 121
Score = 28.0 bits (62), Expect = 1.3
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 99 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
+ + +L + ++ D Y+ + G+ Q++
Sbjct: 67 RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEW 102
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 38.3 bits (89), Expect = 0.001
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNF---IVNVIYPPEVSVEKQWIHTAPDM 65
N+ + + ++AG Y CI S N +V +Y
Sbjct: 58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 117
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
+ C + + ++G + + + + + G Y C S
Sbjct: 118 KVTFYCRLDT-ATSMFLLLKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS 172
Query: 126 NNLG-----SSQQFIQLSGIPNIPV 145
N S + ++G
Sbjct: 173 YNNHAWSFPSEPVKLLVTGDIENTS 197
Score = 32.2 bits (73), Expect = 0.098
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ + +G+ + R K + + G Y C S+
Sbjct: 33 GAVEYQLHFEGSLFAVD-RPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 87
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 37.8 bits (88), Expect = 0.001
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
L W+ + +Y L + + IP D + S+ + GL T+Y
Sbjct: 24 SLRWRRPV-AKFDRYRLTYVSPS--GKKNEMEIPVDST--------SFILRGLDAGTEYT 72
Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
S++A+ S+P+ G+
Sbjct: 73 ISLVAEKGRHKSKPTTIKGSTVVGS 97
Score = 35.1 bits (81), Expect = 0.008
Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 9/70 (12%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
S + Y + + + + + L Y ++++ F
Sbjct: 120 SRVDSYRVSYVPITG-GTPNVVTVDGS--------KTRTKLVKLVPGVDYNVNIISVKGF 170
Query: 228 GWSRPSKAYV 237
S P +
Sbjct: 171 EESEPISGIL 180
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 38.3 bits (89), Expect = 0.001
Identities = 29/202 (14%), Positives = 50/202 (24%), Gaps = 16/202 (7%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGE------STSKNFIVNVIYPPEVSVEKQWIHTA 62
+ES ++ VT AG Y C S+ S +V + +
Sbjct: 72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVK 131
Query: 63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYM 121
R + C ++G + + + + + G Y
Sbjct: 132 SGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYR 190
Query: 122 CQASNNLGSSQQ-------FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYL 174
C S Q I ++G P G + + S Y
Sbjct: 191 CYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYH 250
Query: 175 LKFREREELTPWRNIVIPSDGS 196
L RE V + +
Sbjct: 251 L-SREGGAHERRLPAVRKVNRT 271
Score = 29.1 bits (65), Expect = 1.4
Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 9/130 (6%)
Query: 15 LDRVTLKLAGLYQCIASNN---IGESTSKNFI---VNVIYPPEVSVEKQWIHTAPDMRAE 68
+ + L LAG Y+C S S + + V Y +
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVT 237
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
+ C+ + R+G A V+ T G Y C S
Sbjct: 238 LSCSS-RSSYDMYHLSREGGAHERRLPAVRKVNRT-FQADFPLGPATHGGTYRCFGSFR- 294
Query: 129 GSSQQFIQLS 138
S ++ S
Sbjct: 295 HSPYEWSDPS 304
Score = 26.8 bits (59), Expect = 6.8
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
+++ H + S + + GNY C+ S+
Sbjct: 50 RFNNFMLYKEDRIHI----PIFHGRIFQESFNMSPVTTAHAGNYTCRGSH 95
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 39.0 bits (89), Expect = 0.001
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
A+V W + + + +LL+ ++ + D G Y C + ++ Q
Sbjct: 560 NLARVFWKFQNGVLKA--ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEER-VKNKTVFQ 616
Query: 137 LS 138
+
Sbjct: 617 VV 618
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 36.7 bits (85), Expect = 0.001
Identities = 8/86 (9%), Positives = 18/86 (20%), Gaps = 11/86 (12%)
Query: 159 RLVWQ---VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
+ W G + Y + + + ++ + I+
Sbjct: 37 DIRWMKPPTKQQDGELVGYRISHVWQSA-GISKELLEEVGQN------GSRARISVQVHN 89
Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
+ A R G S
Sbjct: 90 ATCTVRIAAVTRGGVGPFSDPVKIFI 115
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
++ W+ + +Y + + E+ + + + GL+ ++Y
Sbjct: 19 KIAWESPQ-GQVSRYRVTYSSPEDGIHELFPAPDGE--------EDTAELQGLRPGSEYT 69
Query: 219 ASVLAKNRFGWSRPSKAYV 237
SV+A + S+P
Sbjct: 70 VSVVALHDDMESQPLIGTQ 88
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 36.3 bits (84), Expect = 0.002
Identities = 18/84 (21%), Positives = 23/84 (27%), Gaps = 21/84 (25%)
Query: 159 RLVWQ-----VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
L W+ VDTY IQ P P Y + L L
Sbjct: 25 VLHWKPPQNPVDTY--DIQV------TAPGAPPLQAETPGS--------AVDYPLHDLVL 68
Query: 214 FTQYEASVLAKNRFGWSRPSKAYV 237
T Y A+V + P+
Sbjct: 69 HTNYTATVRGLRGPNLTSPASITF 92
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 35.8 bits (83), Expect = 0.002
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L W Y+G I Y+++ R+ W I + ++GL
Sbjct: 29 LKWAKPEYTGGFKITSYIVEKRDLPNGR-WLKAN-------FSNILENEFTVSGLTEDAA 80
Query: 217 YEASVLAKNRFGW-SRPSKA 235
YE V+AKN G S PS+
Sbjct: 81 YEFRVIAKNAAGAISPPSEP 100
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 37.3 bits (85), Expect = 0.003
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEI 69
+ L RV G Y + V PP+VS+ + E+
Sbjct: 255 TFWLPRVQPFQEGTYLATIHLPYL-QGQVTLELAVYKPPKVSLMPATLARAAPGEAPPEL 313
Query: 70 ICNV---YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
+C V Y + +VEW G +E L +D G+
Sbjct: 314 LCLVSHFYPSGGLEVEWELRGGPGGRS------QKAEGQRWLSALRHHSD-GSV 360
Score = 30.0 bits (66), Expect = 0.84
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 31 SNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI 90
S TS+ PP +E W ++ ++ ++G
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLE--WRRQHLGKGHLLL-AATPGLNGQMPAAQEGAVA 237
Query: 91 TLGGRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVF 146
D + + ++ G Y+ Q ++L+ P + +
Sbjct: 238 FAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLM 297
Query: 147 QKSSRRLGPDG 157
+ R P
Sbjct: 298 PATLARAAPGE 308
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 37.2 bits (85), Expect = 0.004
Identities = 11/84 (13%), Positives = 26/84 (30%)
Query: 158 YRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
+R ++ ++ + + R + +S I+GL+ FT Y
Sbjct: 701 FRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGY 760
Query: 218 EASVLAKNRFGWSRPSKAYVFATE 241
+ A N+ + +
Sbjct: 761 RIELQACNQDTPEERCSVAAYVSA 784
Score = 37.2 bits (85), Expect = 0.004
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
L+WQ + I+ Y + +R + + + GL
Sbjct: 810 HLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFAL------ERGCRLRGLS-PGN 862
Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
Y + A + G ++ F
Sbjct: 863 YSVRIRATSLAGNGSWTEPTYFYVT 887
Score = 36.4 bits (83), Expect = 0.007
Identities = 13/77 (16%), Positives = 27/77 (35%)
Query: 157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
G+ L ++ Y + ++ + +I P + + + GL+ +TQ
Sbjct: 502 GFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQ 561
Query: 217 YEASVLAKNRFGWSRPS 233
Y V F R +
Sbjct: 562 YAIFVKTLVTFSDERRT 578
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 35.2 bits (81), Expect = 0.004
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 10/85 (11%)
Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
+ P L W +G YL++ + + GL+
Sbjct: 20 VTPRTVHLTW--QPSAGATHYLVRCSPASPKGEEEEREVQVGRP--------EVLLDGLE 69
Query: 213 LFTQYEASVLAKNRFGWSRPSKAYV 237
YE SV + S
Sbjct: 70 PGRDYEVSVQSLRGPEGSEARGIRA 94
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 35.3 bits (81), Expect = 0.004
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
+ W Y + + E +P + +P + I+GL+ Y
Sbjct: 21 LISWDS-GRGSYQYYRITYGETGGNSPVQEFTVPGP--------VHTATISGLKPGVDYT 71
Query: 219 ASVLAKNRFGWSRPSKAYVFAT 240
+V A +
Sbjct: 72 ITVYAVTDHKPHADGPHTYHES 93
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.8 bits (82), Expect = 0.007
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
SL L + L+ AG Y+C ++ + V+ P + + + +C
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD-QVGMKENEDKYMC 140
Query: 72 NVYA-NPPA-KVEWFRDGTAITLGGRIDMHVSSEKHS 106
P A + W + I V +
Sbjct: 141 ESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTI 177
Score = 31.6 bits (71), Expect = 0.16
Identities = 22/160 (13%), Positives = 40/160 (25%), Gaps = 45/160 (28%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-----KVEWFR------------- 85
V ++ I CN++ + P + WF
Sbjct: 5 VEMMAGGTQITPLND-------NVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFE 57
Query: 86 ----DGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS-- 138
A G + + S SL + I+ + G Y C+ +Q +QL
Sbjct: 58 FFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117
Query: 139 GIPNIPVFQKSSRRLG-------------PDGYRLVWQVD 165
P + P+ + W+
Sbjct: 118 ASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQ 157
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 35.6 bits (82), Expect = 0.007
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 8/122 (6%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI---VNVIYPPEVSVEKQWIHTAPDM 65
N+ + + ++AG Y CI S N + V +Y
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 114
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
+ C + + ++G + + + + + G Y C S
Sbjct: 115 KVTFYCRLDT-ATSMFLLLKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS 169
Query: 126 NN 127
N
Sbjct: 170 YN 171
Score = 32.5 bits (74), Expect = 0.070
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ + +G+ + R K + + G Y C S+
Sbjct: 30 GAVEYQLHFEGSLFAVD-RPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 84
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.5 bits (79), Expect = 0.007
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 16/99 (16%)
Query: 67 AEIICNVYANPPAK---VEWFRDGTAI-TLGGRIDMHVSSEKH---------SLLVRHIK 113
+ C+ ++ A+ V W + + + H+S L ++ +
Sbjct: 21 IILQCH-LSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLT 79
Query: 114 DTDFGNYMCQ-ASNNLGSSQQFIQLSGIPNIPVFQKSSR 151
D G Y C + G+ I L + V + +R
Sbjct: 80 VNDTGEYFCIYHTYPDGTYTGRIFLE-VLESSVAEHGAR 117
Score = 30.3 bits (68), Expect = 0.22
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
L L +T+ G Y CI + + + V+ +
Sbjct: 72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 35.7 bits (81), Expect = 0.008
Identities = 23/160 (14%), Positives = 43/160 (26%), Gaps = 20/160 (12%)
Query: 86 DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQLSGIPNIP 144
+ + +E +L V + D + + + + + I P
Sbjct: 94 PAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNP 153
Query: 145 VFQKSSRRLGPDGYRLVWQV-DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYT 203
V + + + W +T G+ Y ++ DG I
Sbjct: 154 VRDFKASEINKKNVTVTWTEPETTEGLEGY----------------ILYKDGKKVAEIGK 197
Query: 204 Q--SYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
SY L T Y + AK G ++ T
Sbjct: 198 DETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA 237
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 33.6 bits (77), Expect = 0.010
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
+ + +++ EE + + +PS + S NI L +Y +V +
Sbjct: 31 DTVSGFRVEYELSEEGDEPQYLDLPSTAT--------SVNIPDLLPGRKYIVNVYQISED 82
Query: 228 GWSRPSKAYVFAT 240
G + T
Sbjct: 83 GEQSLILSTSQTT 95
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 35.3 bits (80), Expect = 0.015
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 20/141 (14%)
Query: 119 NYMCQASNNLG---SSQQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGII 171
+ +N G S + L+ P+ P + S D + W+ + S +
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS--FHNDDLYVQWENPQNFISRCL 230
Query: 172 QYLLKFREREELTPWRNIVIPSDGSLAGPIY----TQSYNITGLQLFTQYEASVLAKNRF 227
Y ++ + T V + T + + G+ T + K
Sbjct: 231 FYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNK 290
Query: 228 G-------WSRPSKAYVFATE 241
WS S+ +
Sbjct: 291 LCYEDDKLWSNWSQEMSIGKK 311
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 34.5 bits (78), Expect = 0.019
Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 24/139 (17%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV-IYPPEVSVEKQWIHTAPDMRAEII 70
L + +L AG C+ S G + + V +P +++V + E+
Sbjct: 60 VLTVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVA 115
Query: 71 CNVYANPPA-----KVEWFRDGTAITLGGRIDMHVSSEKHS--------------LLVRH 111
C + P G + + V E+ +
Sbjct: 116 CTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPP 175
Query: 112 IKDTDFGNYMCQASNNLGS 130
+ CQA+ L
Sbjct: 176 LGTPVPPALYCQATMRLPG 194
Score = 33.3 bits (75), Expect = 0.047
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 75 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
A+ A V+W T +LG + + + L VR+ + G +C S + Q
Sbjct: 34 ADRGASVQWRGLDT--SLGA---VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 88
Query: 135 IQLS--GIPNIPVFQKS 149
+QL PN +
Sbjct: 89 VQLLVYAFPNQLTVSPA 105
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 33.2 bits (75), Expect = 0.019
Identities = 10/58 (17%), Positives = 17/58 (29%)
Query: 75 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
P +++ W + I S E H L + G Y+C +
Sbjct: 30 QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 34.6 bits (78), Expect = 0.021
Identities = 37/227 (16%), Positives = 66/227 (29%), Gaps = 27/227 (11%)
Query: 31 SNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI 90
S+ + F I PPEV +E + I+ ++ V W DG +
Sbjct: 90 SSWYEVDSFTPFRKAQIGPPEVHLEAE--------DKAIVIHISPGTKDSVMWALDGLSF 141
Query: 91 TLGGRIDMHVSSEKHSLLVRHIKDTDFG-----NYMCQAS--------NNLGSSQQFIQL 137
T I + S + + + + + Y + + S I+
Sbjct: 142 TYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT 201
Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDG 195
+ +P + + Y L W + +Q+L F +R D
Sbjct: 202 TVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDC 261
Query: 196 SLAGPIYTQSYNIT-GLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
+ T + Y V A + S S+ F TE
Sbjct: 262 E---NVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 305
Score = 28.0 bits (61), Expect = 2.9
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 15/84 (17%)
Query: 166 TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
+ Y + F E R I+ + L+ T Y A
Sbjct: 340 IQDYPLIYEIIFWENTS-NAERKIIEKKT----------DVTVPNLKPLTVYCVKARAHT 388
Query: 226 RFG----WSRPSKAYVFATEGAET 245
S S A T+ T
Sbjct: 389 MDEKLNKSSVFSDAVCEKTKPGNT 412
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 32.2 bits (74), Expect = 0.028
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 193 SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG-WSRPSKAYVFAT 240
+ +LA + + I+GL T Y +V AK+ G S S A T
Sbjct: 40 NGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 33.7 bits (77), Expect = 0.030
Identities = 16/124 (12%), Positives = 29/124 (23%), Gaps = 6/124 (4%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI---VNVIYPPEVSVEKQWIHTAPDM 65
N+ + +T AG Y+C + G S + + V Y
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGE 115
Query: 66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNYMCQ 123
+ C + +G S + V + + C
Sbjct: 116 NVTLQCGSR-LRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCY 174
Query: 124 ASNN 127
S
Sbjct: 175 GSRR 178
Score = 30.6 bits (69), Expect = 0.32
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ ++G+ + K + + + G Y C + G S+
Sbjct: 31 EAQEYRLVKEGSPEPWD-TQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSE 85
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 32.9 bits (74), Expect = 0.061
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 24/125 (19%)
Query: 123 QASNNLGSSQQFIQLSGIPNIPV------FQKSSRRLGPDGYRLVWQ------VDTYSGI 170
++ + F + P S ++ W+ + +
Sbjct: 112 TSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMV 171
Query: 171 IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG-- 228
++Y L+++E E T W+ + S + L++ +YE V +K R
Sbjct: 172 LEYELQYKEVNE-TKWKMMDPILT---------TSVPVYSLKVDKEYEVRVRSKQRNSGN 221
Query: 229 WSRPS 233
+ S
Sbjct: 222 YGEFS 226
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 32.3 bits (73), Expect = 0.062
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
AKV + + I G + MH+ + + ++D D G Y Q + +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHST 125
Query: 135 IQLSG 139
+ L G
Sbjct: 126 LVLIG 130
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 31.3 bits (71), Expect = 0.10
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 31/119 (26%)
Query: 44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-----VEWFRDGTAITL------ 92
V V P +V + C + + W R G + ++
Sbjct: 2 VVVQAPTQVPG-------FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54
Query: 93 -------GGRI-----DMHVSSEKHSLLVRHIKDTDFGNYMCQ-ASNNLGSSQQFIQLS 138
R+ + SL + ++ D GNY C + GS I L
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
Score = 25.9 bits (57), Expect = 6.0
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
SL + + ++ G Y C+ S S + + V+ P
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 32.1 bits (73), Expect = 0.11
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 7/124 (5%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIY---PPEVSVEKQWIHTAPD 64
N+ + +T AG Y+C + +G S S + + P +S
Sbjct: 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSAL-PSPLVTSG 114
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQ 123
++C +P ++ A L H + + + + + G Y C
Sbjct: 115 KSVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173
Query: 124 ASNN 127
+S+
Sbjct: 174 SSHG 177
Score = 31.7 bits (72), Expect = 0.12
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
+ ++ + R + K + + + G Y C + +G SQ
Sbjct: 31 EAREYRLDKEESPAPWD-RQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQ 85
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 31.4 bits (70), Expect = 0.12
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVS 101
+ W+ A R+ + N + F + + GR +
Sbjct: 30 LANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRAS-VAN 88
Query: 102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 140
+L + H+ D G Y CQ + ++ + +
Sbjct: 89 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 127
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 31.6 bits (71), Expect = 0.15
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGL 211
+ DG+ LV +++ ++L+ + RE ++ S G ++ +
Sbjct: 116 EITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGI--------PVHLETM 167
Query: 212 QLFTQYEASVLA--KNRFGWSRPSKAYVFATEG 242
+ Y K +S S+ +G
Sbjct: 168 EPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQG 200
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 31.4 bits (71), Expect = 0.15
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 9/143 (6%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNF------IVNVIYPPEVSVE 55
E ++ + + R+T LAG Y+C S ++ +Y
Sbjct: 54 GEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSA 113
Query: 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
+ + C+ + R+G A V+ T
Sbjct: 114 QPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGT-FQADFPLGPAT 171
Query: 116 DFGNYMCQASNNLGSSQQFIQLS 138
G Y C S + S ++ + S
Sbjct: 172 HGGTYRCFGSFH-DSPYEWSKSS 193
Score = 27.2 bits (60), Expect = 4.4
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 77 PPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
R+G I + H K + + + G Y C S Q
Sbjct: 34 MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQ 90
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 31.6 bits (71), Expect = 0.18
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 3/74 (4%)
Query: 162 WQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA 219
W+ G QY ++ +E + A + S F E
Sbjct: 41 WEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVR-FWCSLPTADTSSFVPLEL 99
Query: 220 SVLAKNRFGWSRPS 233
V A +
Sbjct: 100 RVTAASGAPRYHRV 113
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 31.0 bits (70), Expect = 0.24
Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 18/141 (12%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGE----STSKNFIVNVIYPPEVSVEKQWIHTAPD 64
+ + +T + G Y+C ++ S +V Y +
Sbjct: 56 KKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSG 115
Query: 65 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-------LLVRHIKDTDF 117
+ C+ ++G ++S+ H+ V + +
Sbjct: 116 GNVTLQCDS-QVAFDGFILCKEGEDEHP-----QCLNSQPHARGSSRAIFSVGPVSPSRR 169
Query: 118 GNYMCQASNNLGSSQQFIQLS 138
Y C A ++ S ++ S
Sbjct: 170 WWYRCYAYDS-NSPYEWSLPS 189
Score = 27.5 bits (61), Expect = 3.5
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNNLGSSQQ 133
+ +R+ RI +K + I G Y C S+ G S+
Sbjct: 31 ETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSES 87
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 29.8 bits (67), Expect = 0.34
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 203 TQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
++ L + Y V A G S
Sbjct: 71 NKTSAELVLPIKEDYIIEVKATTDGGDGTSS 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.34
Identities = 43/269 (15%), Positives = 90/269 (33%), Gaps = 80/269 (29%)
Query: 18 VTLKLAGLYQ----CIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV 73
++ L G+ Q + + +G + P E+ + ++ A + V
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFT-----------PGEL---RSYLKGATGHSQGL---V 278
Query: 74 YANPPAKV-EW--FRDGT--AITL----GGR-----------IDMHVSSEKHS------- 106
A A+ W F AIT+ G R + S +++
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL---GP--DGYRLV 161
L + ++ +Y+ + +++L + +Q +++S + N ++ L GP Y L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQ-VEISLV-N------GAKNLVVSGPPQSLYGLN 390
Query: 162 WQVDTY---SGIIQYLLKFREREELTPWR--NIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
+ SG+ Q + F ER+ R + P + + L +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---------FHSHLLVPASDLINK 441
Query: 217 YEASVLAKNRFGWSRPS-KAYVFATEGAE 244
L KN ++ + V+ T
Sbjct: 442 D----LVKNNVSFNAKDIQIPVYDTFDGS 466
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.5 bits (66), Expect = 0.36
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 4 IELLYNRESLDLDRVTLKLAGLYQC-IASNNIGESTSKNFIVNV 46
I L +L + + ++ AG Y+ I + +T+K + + +
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 26.4 bits (58), Expect = 5.0
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 98 MHVSSEKHSLLVRHIKDTDFGNYMCQ 123
+H ++L++ ++ D G+Y
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKAD 90
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.6 bits (66), Expect = 0.46
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH--SLLVRHIKD 114
W + R I YA ++ T RI S+++ ++
Sbjct: 36 TWRYQPEGGRDAISIFHYAKGQPYID-----EVGTFKERIQWVGDPSWKDGSIVIHNLDY 90
Query: 115 TDFGNYMCQASN--NLGSSQQFIQLSGIPNIP 144
+D G + C N ++ + L +P
Sbjct: 91 SDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 29.6 bits (67), Expect = 0.47
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA----ITLGGRIDMHVSS 102
P + + C Y N + WFR ++ GRI +
Sbjct: 24 PRFAAK-------KRSSMVKFHC--YTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNG 74
Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
++L +++I+ D G Y C+ + +
Sbjct: 75 SVYTLTIQNIQYEDNGIYFCKQKCDSANHNVT 106
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.4 bits (63), Expect = 0.53
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 17/70 (24%)
Query: 69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL-LVRHIKDTDFGNYMCQASNN 127
+ CN + W L S+ L L + I D G Y C ++
Sbjct: 14 VNCNT------SITWVEGTVGTLL---------SDITRLDLGKRILDPR-GIYRCNGTDI 57
Query: 128 LGSSQQFIQL 137
+ +Q+
Sbjct: 58 YKDKESTVQV 67
Score = 27.2 bits (60), Expect = 1.6
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS 39
LL + LDL + L G+Y+C ++ + S
Sbjct: 25 GTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKES 63
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 30.5 bits (68), Expect = 0.53
Identities = 9/81 (11%), Positives = 16/81 (19%), Gaps = 4/81 (4%)
Query: 162 WQVDTYSGI-IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEAS 220
W+ + Y L + E L G + + +
Sbjct: 157 WKPGIGVLLDTNYNLFYW-YEGLDHALQC--VDYIKADGQNIGCRFPYLEASDYKDFYIC 213
Query: 221 VLAKNRFGWSRPSKAYVFATE 241
V + R S
Sbjct: 214 VNGSSENKPIRSSYFTFQLQN 234
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 28.7 bits (64), Expect = 0.71
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 81 VEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135
+E+ + T GR+ + ++ +L + +++ D G Y + + +
Sbjct: 47 LEYNYNSTKTIFESEFKGRVYLEENN--GALHISNVRKEDKGTYYMRVLRETENELKIT 103
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 29.1 bits (65), Expect = 1.0
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 24 GLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 80
G C ++ + + ++PP+ + I P++ ++ + +P K
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPK-PKDTLMISRTPEVTCVVVDVSHEDPEVK 59
Query: 81 VEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
W+ DG + L V H + Y C+ SN
Sbjct: 60 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 110
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 28.1 bits (62), Expect = 1.0
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 186 WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
++ V S + I GL+ T Y +V P
Sbjct: 41 YKIHVAGETDSSNLNVSEPRAVIPGLRSSTFYNITVCPVLGDIEGTPG 88
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 28.8 bits (64), Expect = 1.3
Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 9/143 (6%)
Query: 2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNF------IVNVIYPPEVSVE 55
E ++ + + + LAG Y+C S ++ +Y
Sbjct: 53 GEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSA 112
Query: 56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
+ + C+ + R+G A V+ T
Sbjct: 113 QPGPTVLAGESVTLSCSSRS-SYDMYHLSREGEAHERRFSAGPKVNGT-FQADFPLGPAT 170
Query: 116 DFGNYMCQASNNLGSSQQFIQLS 138
G Y C S S ++ S
Sbjct: 171 HGGTYRCFGSFR-DSPYEWSNSS 192
Score = 28.4 bits (63), Expect = 2.0
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 77 PPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
R+G I + H K + + + G Y C S Q
Sbjct: 33 RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQ 89
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 27.9 bits (62), Expect = 1.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
S+ V +++ +D G Y C+ G + + I L
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.9 bits (61), Expect = 1.5
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 51 EVSVEKQWIHTAPDMRA-EIICNV-YANPPAKVEW--FRDGTAITLGGRIDMHVSSEKHS 106
++ +++Q H+ E+ C V Y V W T + L R + S
Sbjct: 12 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 71
Query: 107 LLVRHIKD---TDFGNYMCQASNNLGS 130
+ H + D G+Y C A+
Sbjct: 72 FFILHFEPVLPNDNGSYRCSANFQSNL 98
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.0 bits (62), Expect = 1.6
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
+L +++++ +D G Y C ++ + ++L
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 28.6 bits (64), Expect = 1.6
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 41 NFIVNVIYPPEVSVEKQWIHTAPDMRAE--IICNVYAN---PPAKVEWFRDGTAITLG 93
N P+ +V + + + +IC V N P + W R+ ++T G
Sbjct: 82 NSTPATNEAPQATV---FPKSPVLLGQPNTLICFVD-NIFPPVINITWLRNSKSVTDG 135
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 28.2 bits (63), Expect = 1.7
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 78 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
P V+ +R ++ ++ L + +K + G Y C N S
Sbjct: 32 PPGVDLYRLE-------KLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSL 79
Score = 28.2 bits (63), Expect = 1.9
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 9 NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI---YPPEVSVEKQWIHTAPD 64
++ L + + LAG Y+C N S S + P +S P
Sbjct: 50 DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS-----AQPGPA 104
Query: 65 MRAE----IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
+ + + C + +++G + S + + G Y
Sbjct: 105 VSSGGDVTLQCQ-TRYGFDQFALYKEGDPA----PYKNPERWYRASFPIITVTAAHSGTY 159
Query: 121 MCQASNN 127
C + ++
Sbjct: 160 RCYSFSS 166
>3lqz_B HLA-DP2 beta chain linked with DRA peptide; MHC, immune, disulfide
bond, glycoprotein, immune respo membrane, MHC II,
transmembrane, immune system; HET: NAG NDG; 3.25A {Homo
sapiens}
Length = 212
Score = 28.6 bits (64), Expect = 1.7
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 32 NNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTA 89
+N + P V+V ++C+V P +V WF +G
Sbjct: 102 HNYELGGP--MTLQRRVQPRVNVSPSKKGPLQH-HNLLVCHVTDFYPGSIQVRWFLNGQE 158
Query: 90 ITLG 93
T G
Sbjct: 159 ETAG 162
>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B*
1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D
2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...
Length = 198
Score = 27.8 bits (62), Expect = 3.0
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 32 NNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTA 89
+N + I+ P V++ ++C+V P KV WFR+
Sbjct: 79 HNYEVAFR--GILQRRVEPTVTISPSRTEALNH-HNLLVCSVTDFYPGQIKVRWFRNDQE 135
Query: 90 ITLG 93
T G
Sbjct: 136 ETAG 139
>1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility
antigen, immune system; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B* 1fng_B*
1ktd_B* 1ieb_B* 1kt2_B* 3o6f_B 3t0e_B
Length = 224
Score = 27.8 bits (62), Expect = 3.2
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 42 FIVNVIYPPEVSV--EKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLG 93
F+V P V+V K ++ ++C+V P +V WFR+G G
Sbjct: 115 FLVPRRVEPTVTVYPTKTQPLEHHNL---LVCSVSDFYPGNIEVRWFRNGKEEKTG 167
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 27.1 bits (60), Expect = 3.9
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 94 GRIDMHVS-SEKHSLLVRHIKDT---DFGNYMCQASNNLGSSQQFIQLSGIPNIP----- 144
GR + + EK L HI D+ D Y C AS+N QL PNI
Sbjct: 59 GRFTIFFNKREKKFSL--HIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPA 116
Query: 145 VFQKSSRRLGP 155
V+Q R
Sbjct: 117 VYQLKDPRSQD 127
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 27.6 bits (61), Expect = 3.9
Identities = 7/85 (8%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 67 AEIICNV--YANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGN 119
C ++ ++WF++G ++ V + V ++
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194
Query: 120 YMCQASNNLGSSQQFIQLSGIPNIP 144
+C+ ++ + +
Sbjct: 195 VICEVAHVTLQGDPLRGTANLSETI 219
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 26.4 bits (59), Expect = 3.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 102 SEKHSLLVRHIKDT---DFGNYMCQASNNLGSSQQF 134
EK L HI D+ D Y C AS N G+ Q+F
Sbjct: 67 REKKLSL--HIADSQPGDSATYFCAASANSGTYQRF 100
>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET:
NAG; 2.60A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 222
Score = 27.1 bits (60), Expect = 5.3
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 33 NIGESTSKNFIVNVIYP-PEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTA 89
N + + + P +S+ + + ++C+V PA KV WFR+G
Sbjct: 107 NYEGPETSTSLRRLEQPNVAISLSRTEALNHHNT---LVCSVTDFYPAKIKVRWFRNGQE 163
Query: 90 ITLG 93
T+G
Sbjct: 164 ETVG 167
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 26.2 bits (58), Expect = 5.6
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 7/47 (14%)
Query: 49 PPEVSVEKQWIHTAPDMRAE--IICNVYANPPA--KVEWFRDGTAIT 91
P+V V + + + C P + +DG +
Sbjct: 24 TPKVQV---YSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPME 67
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 25.8 bits (57), Expect = 6.8
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET 245
+A I + +Y TG+ T+Y V A + + S + E
Sbjct: 50 IATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPKLEH 98
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 25.4 bits (56), Expect = 7.3
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 49 PPEVSV--EKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAIT 91
P++ V + P++ + C V P +++ ++G I
Sbjct: 4 TPQIQVYSRHPPENGKPNI---LNCYVTQFHPPHIEIQMLKNGKKIP 47
>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC,
immune system; 3.05A {Triticum aestivum}
Length = 250
Score = 26.7 bits (59), Expect = 7.5
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 39 SKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLG 93
+ P V++ ++C+V PA KV WFR+ T G
Sbjct: 119 ELRTTLQRRVEPTVTISPSRTEALNH-HNLLVCSVTDFYPAQIKVRWFRNDQEETAG 174
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 26.4 bits (58), Expect = 7.6
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 49 PPEVSVEKQWIHTAPDMRAEIICNVYAN----PPAKVEWFRDGTAITLG 93
P+ +V + + + + + P + W R+ ++ G
Sbjct: 120 APQATV---FPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADG 165
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 25.4 bits (56), Expect = 8.4
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 7/47 (14%)
Query: 49 PPEVSVEKQWIHTAPDMRAE--IICNVYANPPA--KVEWFRDGTAIT 91
P+V V + + + C P + +DG +
Sbjct: 4 TPKVQV---YSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPME 47
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 25.4 bits (56), Expect = 8.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 49 PPEVSV--EKQWIHTAPDMRAEIICNVYA-NPPA-KVEWFRDGTAIT 91
P++ V + + +IC V +PP +E ++G I
Sbjct: 4 SPKIQVYSHYPGEYGKENT---LICYVSGFHPPDISIELLKNGEVIA 47
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 25.5 bits (56), Expect = 8.5
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 39 SKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAIT 91
S + + P++ V + P++ + C V P +++ ++G I
Sbjct: 14 SLTGLYAIQKTPQIQVYSRHPPENGKPNI---LNCYVTQFHPPHIEIQMLKNGKKIP 67
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 25.6 bits (55), Expect = 9.2
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 49 PPEVSVEKQWIHTA-PDMRAEIICNV-YANPPAKVEW--FRDGTAITLGGRIDMHVSSEK 104
++++++ H+A +I C V Y V W + L ++ S E+
Sbjct: 13 EVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEE 72
Query: 105 H---SLLVRHIKDT---DFGNYMCQASNNLG 129
+ + V H K D G+Y C + N
Sbjct: 73 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ 103
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 25.7 bits (56), Expect = 9.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 106 SLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLS 138
+L + + D GNY C+ + GS + L
Sbjct: 94 TLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR 127
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 25.2 bits (55), Expect = 9.8
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 23 AGLYQCIASNNIGESTSKNFIVNVIYPP 50
AG Y C+ G +N+ PP
Sbjct: 80 AGEYGCMVDGARGPQILHRVSLNI-LPP 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.406
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,750,243
Number of extensions: 217618
Number of successful extensions: 1642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 644
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)