BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12132
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN 70
I C+V +NPPA + W RD + ++ S K L + D DFG Y C A+N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 71 NLGSS-QQFI-QLSGIPNIP 88
++G+ Q++I L+ +P+ P
Sbjct: 180 HIGTRFQEYILALADVPSSP 199
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 13 IICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
++C+ P ++ W R DG T G GRI++ SL ++ +K +D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 66 CQASNNLGSSQQFIQL 81
C+A++ +G Q+ + L
Sbjct: 80 CEAASRIGGHQKSMYL 95
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN 70
I C+V +NPPA + W RD + ++ S K L + D DFG Y C A+N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 71 NLGSS-QQFI-QLSGIPNIP 88
++G+ Q++I L+ +P+ P
Sbjct: 180 HIGTRFQEYILALADVPSSP 199
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 5 TAPDMRAEIICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIK 57
T + + ++C+ P ++ W R DG T G GRI++ SL ++ +K
Sbjct: 12 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 58 DTDFGNYMCQASNNLGSSQQFIQL 81
+D G Y C+A++ +G Q+ + L
Sbjct: 72 LSDSGRYDCEAASRIGGHQKSMYL 95
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
I C V+A P A + WFRDG + I ++ + L V + DFGNY C A N
Sbjct: 38 ITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
Query: 71 NLG-SSQQFIQLSG-IPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG 126
+G S +FI + P+ P QV+ YS+ Q ++F E E
Sbjct: 98 RIGQESLEFILVQADTPSSPSID---------------QVEPYSSTAQ--VQFDEPEA 138
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C+V P K+ W +D I GG M + +L V + D G Y C ASN G
Sbjct: 27 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 75 SQQFIQLSGIPNIPVFQK 92
QL G+ P F K
Sbjct: 87 DSCSAQL-GVQEPPRFIK 103
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
+ ++ D+ E C + PP +V W +D + G + + + S+ + ++ D
Sbjct: 202 VETLKGADVHLE--CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD 259
Query: 61 FGNYMCQASNNLGS 74
G Y C+ASN++GS
Sbjct: 260 IGEYQCKASNDVGS 273
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
I D C + +P KV W++D T I + M L + ++ D G+
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 64 YMCQASNNLGSSQQFIQLSGIPNIPVFQK 92
Y C+A N GS+ L + PVF+K
Sbjct: 170 YTCEAHNAAGSASSSTSLK-VKEPPVFRK 197
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C+V P K+ W +D I GG M + +L V + D G Y C ASN G
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 75 SQQFIQLSGIPNIPVFQK 92
QL G+ P F K
Sbjct: 279 DSCSAQL-GVQEPPRFIK 295
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C + PP +V W +D + G + + + S+ + ++ D G Y C+ASN++GS
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C V P ++ W+++ T + M + SL++ + +D G Y C+A N++G+
Sbjct: 27 CKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGA 86
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
I D C + +P KV W++D T I + M L + ++ D G+
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 64 YMCQASNNLGSSQQFIQLSGIPNIPVFQK 92
Y C+A N GS+ L + PVF+K
Sbjct: 362 YTCEAHNAAGSASSSTSLK-VKEPPVFRK 389
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C + + P +V W++DG + + +L + + G Y C ASN LG+
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 75 SQQFIQLS 82
+ +L+
Sbjct: 183 ASSSAKLT 190
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 22 PAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80
P V WF+D G + I + S +L + + G Y CQ N G+ + F
Sbjct: 506 PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT 565
Query: 81 LS 82
LS
Sbjct: 566 LS 567
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C+V P K+ W +D I GG M + +L V + D G Y C ASN G
Sbjct: 27 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 75 SQQFIQLSGIPNIPVFQK 92
QL G+ P F K
Sbjct: 87 DSCSAQL-GVQAPPRFIK 103
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
+ ++ D+ E C + PP +V W +D + G + + + S+ + ++ D
Sbjct: 202 VETLKGADVHLE--CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD 259
Query: 61 FGNYMCQASNNLGS 74
G Y C+ASN++GS
Sbjct: 260 IGEYQCKASNDVGS 273
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
I D C + +P KV W++D T I + M L + ++ D G+
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 64 YMCQASNNLGSSQQFIQLSGIPNIPVFQK 92
Y C+A N GS+ L + PVF+K
Sbjct: 170 YTCEAHNAAGSASSSTSLK-VKEPPVFRK 197
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
AE+ C V PP V W + G + R+ +H LL+ TD G Y+C+A N
Sbjct: 31 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
AE+ C V PP V W + G + R+ +H LL+ TD G Y+C+A N
Sbjct: 32 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
AE+ C V PP V W + G + R+ +H LL+ TD G Y+C+A
Sbjct: 31 EAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 90
Query: 70 N 70
N
Sbjct: 91 N 91
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
E+ C NPP ++ WF+D + I + + +L +R ++ D G Y CQA +
Sbjct: 29 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSV 86
Query: 72 LGSSQ 76
LG ++
Sbjct: 87 LGCAK 91
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
E+ C NPP ++ WF+D + I + +L +R ++ D G Y CQA +
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 72 LGSSQ 76
LG ++
Sbjct: 743 LGCAK 747
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R I PP +++W+++G + H H L + + + D GNY +
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYTVILT 401
Query: 70 NNLGSSQQFIQLSGIPNIP 88
N + +Q +S + +P
Sbjct: 402 NPISKEKQSHVVSLVVYVP 420
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
C +P + WFR+G I + + S+ + L VR+I ++D G Y+C+A+N G
Sbjct: 26 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 83
Query: 74 -SSQQFIQLSGIPNI 87
Q F+Q+ P+I
Sbjct: 84 DEKQAFLQVFVQPHI 98
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 13 IICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
++C+ P ++ W R DG T G GRI++ SL ++ +K +D G Y
Sbjct: 114 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 173
Query: 66 CQASNNLGSSQQFIQL 81
C+A++ +G Q+ + L
Sbjct: 174 CEAASRIGGHQKSMYL 189
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
++A + C NP V W + +A+ RI + E SL + +++ D G Y C A
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVA 172
Query: 69 SNNLGSS 75
N+LG++
Sbjct: 173 KNSLGTA 179
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNYMCQA 68
A +C V + P ++ W R+ I L D S ++ L + ++D+D G Y C A
Sbjct: 25 ATFMCAVESYPQPEISWTRNKILIKL---FDTRYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 69 SNNLGSSQQ 77
+N +G + +
Sbjct: 82 NNGVGGAVE 90
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT- 59
M + + + + ++ C V NP + W +GT + +G +D S SLL+ + T
Sbjct: 16 MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQ 73
Query: 60 DFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSAI 114
D G Y C A+N+ G S + +Q + + N +S S R G G L+ +S
Sbjct: 74 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGE 132
Query: 115 IQYLLKFRE 123
+ Y F E
Sbjct: 133 LSYAWIFNE 141
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C P W ++G + RI + E+ +L + + +D G Y C A N G
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 44 VSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
VS E +L + ++ +D GNY C +N +
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT- 59
M + + + + ++ C V NP + W +GT + +G +D S SLL+ + T
Sbjct: 15 MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQ 72
Query: 60 DFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSAI 114
D G Y C A+N+ G S + +Q + + N +S S R G G L+ +S
Sbjct: 73 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGE 131
Query: 115 IQYLLKFRE 123
+ Y F E
Sbjct: 132 LSYAWIFNE 140
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C P W ++G + RI + E+ +L + + +D G Y C A N G
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 44 VSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
VS E +L + ++ +D GNY C +N +
Sbjct: 151 VSQETGNLYIAKVEKSDVGNYTCVVTNTV 179
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
C +P + WFR+G I + + S+ + L VR+I ++D G Y+C+A+N G
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 177
Query: 74 -SSQQFIQL 81
Q F+Q+
Sbjct: 178 DEKQAFLQV 186
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
C +P + WFR+G I + + S+ + L VR+I ++D G Y+C+A+N G
Sbjct: 216 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 273
Query: 74 -SSQQFIQL 81
Q F+Q+
Sbjct: 274 DEKQAFLQV 282
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + GRI S +L + +++D G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 68 ASNNLGS 74
A+N+ G+
Sbjct: 186 ATNSAGT 192
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
+ P E++ ++ + P V W++DG + GR+ + + + L V+ + D G Y
Sbjct: 8 STPGGDLELVVHL-SGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEY 66
Query: 65 MCQASNN 71
+C A +
Sbjct: 67 LCDAPQD 73
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A++ C + P ++W+R G + + M H+L V + D G Y C A+N
Sbjct: 25 AQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84
Query: 71 NLG----SSQQFIQLSGI--PNIPVFQK 92
+G SS+ +Q + P P+ +K
Sbjct: 85 EVGEVETSSKLLLQATPQFHPGYPLKEK 112
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL----VRHIKDTDFGNYMC 66
A + C V P +EWF+DG ++ + V + +L ++ K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 QASNNLGSS 75
A N +G +
Sbjct: 87 VAKNRVGQA 95
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
P + W +DG + + SS + +LL+ +++ D GNY C A N +G+
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 76 Q 76
+
Sbjct: 197 E 197
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL----VRHIKDTDFGNYMC 66
A + C V P +EWF+DG ++ + V + +L ++ K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 QASNNLGSS 75
A N +G +
Sbjct: 87 VAKNRVGQA 95
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
P + W +DG + + SS + +LL+ +++ D GNY C A N +G+
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 76 Q 76
+
Sbjct: 197 E 197
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + T GRI S L + ++TD G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSG---GLQIESSEETDQGKYECV 182
Query: 68 ASNNLG 73
ASN+ G
Sbjct: 183 ASNSAG 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + T GRI S +L + +++D G Y C
Sbjct: 126 ATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSG---ALQIESSEESDQGKYECV 182
Query: 68 ASNNLGS 74
A+N+ G+
Sbjct: 183 ATNSAGT 189
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
A D A + C +P + W ++G T GR E+ +L +++++ +D G Y
Sbjct: 21 AVDGTALLKCKATGDPLPVISWLKEG--FTFPGRDPRATIQEQGTLQIKNLRISDTGTYT 78
Query: 66 CQASNNLGSS 75
C A+++ G +
Sbjct: 79 CVATSSSGET 88
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
P + + C+ +NPPA+ W DG ++ L + +I + + G Y C
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDG-----------NIQQHTQELFISNITEKNSGLYTC 443
Query: 67 QASNN 71
QA+N+
Sbjct: 444 QANNS 448
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
C+ +NPPA+ WF +GT L + +I + G+Y CQA N+
Sbjct: 225 CHAASNPPAQYSWFVNGT-----------FQQSTQELFIPNITVNNSGSYTCQAHNS 270
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMC 66
+ + + C ANPPA W +GT + +G D L++ + +K D G+Y C
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 67 QASNNLGS 74
A+N G+
Sbjct: 80 VATNARGT 87
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C P V W RDG + RI++ + S LV D G Y C A N G+
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE----DSGMYQCVAENKHGT 371
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF---GNYMCQASNN 71
C + NP +++W + G + +SSE + HI++ DF G Y C+A N
Sbjct: 229 CFAFGNPVPQIKWRK-----LDGSQTSKWLSSEP----LLHIQNVDFEDEGTYECEAENI 279
Query: 72 LG 73
G
Sbjct: 280 KG 281
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C V A+ P V W +D + + + + L + +K D G Y +A N
Sbjct: 394 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 453
Query: 71 NLGSSQQFIQLS 82
+ G+ ++ + L+
Sbjct: 454 SYGTKEEIVFLN 465
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C V A+ P V W +D + + + + L + +K D G Y +A N
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Query: 71 NLGSSQQFIQLS 82
+ G+ ++ + L+
Sbjct: 560 SYGTKEEIVFLN 571
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + GRI S +L + ++TD G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECV 182
Query: 68 ASNNLG 73
A+N+ G
Sbjct: 183 ATNSAG 188
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C V +P V+W+R G I G RI H L++ + D D Y +
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI-QEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 68 ASNNLGS 74
A+N GS
Sbjct: 81 ATNQGGS 87
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C V +P V+W+R G I G RI H L++ + D D Y +
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI-QEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 68 ASNNLGS 74
A+N GS
Sbjct: 81 ATNQGGS 87
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
D A+ P W +DG AIT GG+ + L + +D G Y C
Sbjct: 21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80
Query: 68 ASNNLGSSQQFIQLS 82
N+ GS +L+
Sbjct: 81 VKNSAGSVSSSCKLT 95
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C V +P V+W+R G I G RI H L++ + D D Y +
Sbjct: 20 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI-QEFKGGYHQLIIASVTDDDATVYQVR 78
Query: 68 ASNNLGS 74
A+N GS
Sbjct: 79 ATNQGGS 85
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + GRI S +L + ++TD G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECV 182
Query: 68 ASNNLG 73
A+N+ G
Sbjct: 183 ATNSAG 188
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTD 60
E +C VY++ ++W + +G+ G + V SS L + ++ + D
Sbjct: 137 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD 196
Query: 61 FGNYMCQASNNLGSSQQFIQLSGIP 85
G Y+C+ SN +G + Q L+ +P
Sbjct: 197 AGEYICKVSNYIGQANQSAWLTVLP 221
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + GRI S +L + ++TD G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECV 182
Query: 68 ASNNLG 73
A+N+ G
Sbjct: 183 ATNSAG 188
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
P I C +P V+W + +T DM V ++ L + +KD+ NY C
Sbjct: 219 PGGNVNITCVAVGSPMPYVKWMQGAEDLT--PEDDMPVG--RNVLELTDVKDS--ANYTC 272
Query: 67 QASNNLGSSQQFIQLS 82
A ++LG + Q++
Sbjct: 273 VAMSSLGVIEAVAQIT 288
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTD 60
E +C VY++ ++W + +G+ G + V SS L + ++ + D
Sbjct: 137 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD 196
Query: 61 FGNYMCQASNNLGSSQQFIQLSGIP 85
G Y+C+ SN +G + Q L+ +P
Sbjct: 197 AGEYICKVSNYIGQANQSAWLTVLP 221
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTD 60
E +C VY++ ++W + +G+ G + V SS L + ++ + D
Sbjct: 136 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD 195
Query: 61 FGNYMCQASNNLGSSQQFIQLSGIP 85
G Y+C+ SN +G + Q L+ +P
Sbjct: 196 AGEYICKVSNYIGQANQSAWLTVLP 220
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A I+C+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176
Query: 71 NLGSSQQFIQLSGIPNIP 88
F + I N+P
Sbjct: 177 LARGEINFKDIQVIVNVP 194
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 9 MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVR-HIKDTDFGNYMC 66
M ++ C ANPPA + W TL G + V ++ +L + I + G Y+C
Sbjct: 233 MDVKLTCKADANPPATEYHW------TTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYIC 286
Query: 67 QASNNLG--SSQQFIQLSGIPNIP 88
+A+N +G S Q + ++ P P
Sbjct: 287 EATNPIGTRSGQVEVNITEFPYTP 310
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + GRI S +L + +++D G Y C
Sbjct: 127 ATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG---ALQIESSEESDQGKYECV 183
Query: 68 ASNNLGS 74
A+N+ G+
Sbjct: 184 ATNSAGT 190
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
A I+C+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 19 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEG 75
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 10 RAEIICNVY-ANPPAKVEWFRDG----TAITLGGRIDMHVS----SEKHSLLVRHIKDTD 60
RA + C+ + +PP++ WF+DG TA R M+ S + L+ + D
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180
Query: 61 FGNYMCQASNNLGSS 75
G Y CQA N G++
Sbjct: 181 SGEYYCQAQNGYGTA 195
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
A I+C+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEG 174
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMH--VSSEK--HSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
P V W+ +G + D+H + SEK HSL+ ++ +D G Y C A N G +
Sbjct: 33 PAPDVSWYLNGRTVQ---SDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEAT 89
Query: 77 QFIQL 81
+QL
Sbjct: 90 FTVQL 94
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C+ P V W R G ++ R + + K + + ++ +D GNY N
Sbjct: 26 ARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 85
Query: 71 NLGSSQQFIQLS 82
+ G + L+
Sbjct: 86 SEGKQEAEFTLT 97
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C+ P V W R G ++ R + + K + + ++ +D GNY N
Sbjct: 32 ARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91
Query: 71 NLGSSQQFIQLS 82
+ G + L+
Sbjct: 92 SEGKQEAEFTLT 103
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQAS 69
A C V P +V WF+D + + E + SL + + D Y C+A
Sbjct: 59 ARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 70 NNLGSSQQFIQL 81
N+LG + +L
Sbjct: 119 NSLGEATCTAEL 130
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 13 IICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C A+PPA W +GT + L G R H + +++ K D G Y C ASN
Sbjct: 26 LACRARASPPATYRWKMNGTEMKLEPGSR---HQLVGGNLVIMNPTKAQDAGVYQCLASN 82
Query: 71 NLGS 74
+G+
Sbjct: 83 PVGT 86
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C + NP +++W + + G + ++ + +L + + D G Y C+A N+ G
Sbjct: 228 CFAFGNPVPRIKWRK------VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKG 280
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C P V W R+G + R+++ + S L D G Y C A N G+
Sbjct: 315 CAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLE----DSGMYQCVAENKHGT 370
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQAS 69
A C V P +V WF+D + + E + SL + + D Y C+A
Sbjct: 59 ARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 70 NNLGSSQQFIQL 81
N+LG + +L
Sbjct: 119 NSLGEATCTAEL 130
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 9 MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMC 66
M ++ C ANPPA + W TL G + V ++ +L + I + G Y+C
Sbjct: 233 MDVKLTCKADANPPATEYHW------TTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYIC 286
Query: 67 QASNNLG--SSQQFIQLSGIP 85
+A+N +G S Q + ++ P
Sbjct: 287 EATNPIGTRSGQVEVNITEFP 307
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 9 MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMC 66
M ++ C ANPPA + W TL G + V ++ +L + I + G Y+C
Sbjct: 248 MDVKLTCKADANPPATEYHW------TTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYIC 301
Query: 67 QASNNLGS 74
+A+N +G+
Sbjct: 302 EATNPIGT 309
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C NP V W +DG AI + L + +K D G Y C N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRN 410
Query: 71 NLGSSQQF--IQLSGIPNIPV----FQKSSRRLGP 99
+ S++ ++L G + PV FQ+ + GP
Sbjct: 411 DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGP 445
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMC 66
A++ C P +V W + T G D+ S E+ +L V +I+ T+ G Y+C
Sbjct: 732 AKVECKADGFPKPQVTW-KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 67 QASNNLGS 74
+A N +GS
Sbjct: 791 EAINGIGS 798
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 22 PAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
P ++W DG AI+ G V L + ++ + GN+ C A NL QQF
Sbjct: 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA-RNLAGHQQF 705
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 11 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 63
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 64 YMCQASNNLGS 74
Y C A N GS
Sbjct: 115 YACLARNQFGS 125
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 13 IICNVYANPPAKVEWFR--DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++C P W++ +GT ++ V +L+++ D G Y+C +N
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327
Query: 71 NLG 73
++G
Sbjct: 328 SVG 330
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 9 MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMC 66
M ++ C ANPPA + W TL G + V ++ +L + I + G Y+C
Sbjct: 234 MDVKLTCKADANPPATEYHW------TTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYIC 287
Query: 67 QASNNLGS 74
+A+N +G+
Sbjct: 288 EATNPIGT 295
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 24 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 142 KLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 184
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
N K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 136 NELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
N K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 133 NELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 179
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
N K++W++D + L ++H S K L+V ++ + GNY C AS
Sbjct: 136 NELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like
Domain Of Nectin-1
Length = 95
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 12 EIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQAS 69
++ C ANPPA + W TL G + V ++ +L R I + G Y+C+A+
Sbjct: 26 KLTCKADANPPATEYHW------TTLNGSLPKGVEAQNRTLFFRGPITYSLAGTYICEAT 79
Query: 70 NNLGSSQQFIQLS 82
N +G+ ++++
Sbjct: 80 NPIGTRSGQVEVN 92
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ GS + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSWPLTFGGGSKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 24 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
KV W R G+ I+ + + +H+L VR + D G+Y A ++
Sbjct: 38 KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSS 85
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 10 RAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDF 61
RA + C+ +PP++ WF+DG + + S+ + L+ + +D
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 62 GNYMCQASNNLGS 74
G Y C+A N G+
Sbjct: 184 GEYSCEARNGYGT 196
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 3 SITAPDMRAE--IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHI 56
S+ P++R E I V NPP + W +G + I + E + LL
Sbjct: 13 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 72
Query: 57 KDTDFGNYMCQASNNLGSSQQFI 79
+ GNY A N LG++ Q I
Sbjct: 73 THYNNGNYTLIAKNPLGTANQTI 95
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn
Protein
Length = 102
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A + C V A +V W++DG ++ ++ + L+V+ + G Y C+A
Sbjct: 29 ATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87
Query: 71 N 71
Sbjct: 88 Q 88
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNN 71
+ CNV+ +PP +V W ++ A+ ++ + + + + + D G Y N
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Query: 72 LGS 74
GS
Sbjct: 197 YGS 199
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 24 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83
KV W +G+AI R+ V+ E+ L + D G Y+ + + Q+ + LSG
Sbjct: 34 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNN 71
+ CNV+ +PP +V W ++ A+ ++ + + + + + D G Y N
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301
Query: 72 LGSSQQFIQLS 82
GS +S
Sbjct: 302 YGSETSDFTVS 312
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 24 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83
KV W +G+AI R+ V+ E+ L + D G Y+ + + Q+ + LSG
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R I PP +++W+++G + H H L + + + D GNY +
Sbjct: 217 RVRIPAKYLGYPPPEIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYTVILT 271
Query: 70 NNLGSSQQFIQLSGIPNIP 88
N + +Q +S + +P
Sbjct: 272 NPISKEKQSHVVSLVVYVP 290
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
P V+++RDG I +D +S E +SLL+ D G Y A+N++G +
Sbjct: 131 PTPVVKFYRDGAEIQ--SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
Query: 79 IQL 81
+L
Sbjct: 189 AEL 191
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 21 PPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 77
P +V WFRDG I TL G + + S + L + + + G Y +A+N G +
Sbjct: 33 PVPEVSWFRDGQVISTSTLPG-VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS 91
Query: 78 FIQL 81
+L
Sbjct: 92 TAEL 95
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
P V+++RDG I +D +S E +SLL+ D G Y A+N++G +
Sbjct: 131 PTPVVKFYRDGAEIQ--SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
Query: 79 IQL 81
+L
Sbjct: 189 AEL 191
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 21 PPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 77
P +V WFRDG I TL G + + S + L + + + G Y +A+N G +
Sbjct: 33 PVPEVSWFRDGQVISTSTLPG-VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS 91
Query: 78 FIQL 81
+L
Sbjct: 92 TAEL 95
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 33 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPN 86
A + R S ++SL + ++ DFG+Y CQ N+ G+ + + P
Sbjct: 55 AAGVPSRFSGSGSGTQYSLKINSLQSEDFGSYYCQHFWNIPFTFGSGTKLEIKRADAAPT 114
Query: 87 IPVFQKSSRRLGPDGYRLV 105
+ +F SS +L G +V
Sbjct: 115 VSIFPPSSEQLTSGGASVV 133
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
+P + W +DG+ + D ++ L++ + + +D G Y+C +N +G +
Sbjct: 138 GHPEPTISWKKDGSPLD---DKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESE 194
Query: 79 IQLSGIPNIPVFQKSS 94
+ + P F K++
Sbjct: 195 VAELTVLERPSFVKAA 210
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNN------LGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
SL + ++ DFG Y CQ N G+ + + P + +F SS++L G
Sbjct: 72 SLKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLELKRADAAPTVSIFPPSSKQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
M E C V P V W ++G + + S +L + + +D G Y C A
Sbjct: 328 MDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVA 384
Query: 69 SNNLGSSQQFIQL 81
N G++Q QL
Sbjct: 385 ENEAGNAQSSAQL 397
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS- 69
A + C V PP W R I L R + +LL+ ++ D D G Y C +
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQL--RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTY 296
Query: 70 --NNLGSSQQFIQL 81
N+ +S + L
Sbjct: 297 KNENISASAELTVL 310
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 73 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 132
Query: 104 LV 105
+V
Sbjct: 133 VV 134
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 213
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN+ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ SN G+ + + P + +F SS +L G
Sbjct: 72 TLSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++P ++W + +G+ I + + E L +R++
Sbjct: 135 EFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 194
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A N++G S L+
Sbjct: 195 EDAGEYTCLAGNSIGLSHHSAWLT 218
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAIT-----------LGGRIDMHVSSEKHSLLVRHIK 57
M C V NP K+ WF+DG I+ L G +H ++
Sbjct: 23 MPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD------- 75
Query: 58 DTDFGNYMCQASNNLG 73
D GNY A+N G
Sbjct: 76 --DDGNYTIMAANPQG 89
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAIT-----------LGGRIDMHVSSEKHSLLVRHIK 57
M C V NP K+ WF+DG I+ L G +H ++
Sbjct: 24 MPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD------- 76
Query: 58 DTDFGNYMCQASNNLG 73
D GNY A+N G
Sbjct: 77 --DDGNYTIMAANPQG 90
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++P ++W + +G+ I + + E L +R++
Sbjct: 134 EFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A N++G S L+
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLT 217
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++P ++W + +G+ I + + E L +R++
Sbjct: 134 EFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A N++G S L+
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLT 217
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C NP V W +DG AI + L + +K D G Y C N
Sbjct: 331 AVFTCQYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRN 380
Query: 71 NLGSSQQFIQL 81
+ S++ +L
Sbjct: 381 DRESAEASAEL 391
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 11 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 63
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 28 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 85
Query: 64 YMCQASNNLGS 74
Y C A N GS
Sbjct: 86 YACLARNQFGS 96
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 13 IICNVYANPPAKVEWFR--DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++C P W++ +GT ++ V +L+++ D G Y+C +N
Sbjct: 238 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 297
Query: 71 NLG 73
++G
Sbjct: 298 SVG 300
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 12 EIICNVYANPPAKVEWFR-----------DGT--AITLGGRIDMHVSSEKHSLLVRHIKD 58
E C VY++ ++W + DGT L I V ++ L + ++ +
Sbjct: 133 EFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR-LRLANVSE 191
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y+C+A+N +G +++ LS
Sbjct: 192 RDGGEYLCRATNFIGVAEKAFWLS 215
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C NP V W +DG AI + L + +K D G Y C N
Sbjct: 325 AVFTCQYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRN 374
Query: 71 NLGSSQQFIQL 81
+ S++ +L
Sbjct: 375 DRESAEASAEL 385
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 11 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 63
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 22 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 64 YMCQASNNLGS 74
Y C A N GS
Sbjct: 80 YACLARNQFGS 90
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 13 IICNVYANPPAKVEWFR--DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++C P W++ +GT ++ V +L+++ D G Y+C +N
Sbjct: 232 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 71 NLG 73
++G
Sbjct: 292 SVG 294
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C NP V W +DG AI + L + +K D G Y C N
Sbjct: 328 AVFTCQYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRN 377
Query: 71 NLGSSQQFIQL 81
+ S++ +L
Sbjct: 378 DRESAEASAEL 388
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 11 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN------ 63
AEI C NP ++ W R DGTA+ G + S L+ + D+
Sbjct: 22 AEIECKASGNPMPEIIWIRSDGTAV--GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 64 YMCQASNNLGS 74
Y C A N GS
Sbjct: 80 YACLARNQFGS 90
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 13 IICNVYANPPAKVEWFR--DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++C + P W++ +GT ++ V +L+++ D G Y+C +N
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 71 NLG 73
++G
Sbjct: 295 SVG 297
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
I NV + P A+V+W+ +G + +I +S +L + D G Y +N
Sbjct: 28 FILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYK 87
Query: 73 GSSQQFIQL 81
G + + L
Sbjct: 88 GEASDYATL 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYMCQASNNLG 73
C V P + W DG + M V HSL++ + D G Y C A+N G
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
Query: 74 SSQQFIQL 81
+ ++L
Sbjct: 91 QNSFSLEL 98
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFG+Y CQ + G++ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPFTFGTGTNLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLVWQVDTY---SAIIQYLLKFREREG 126
SS +L G +V ++ + +++ + ER+G
Sbjct: 121 SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQG 157
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++ ++W + +G+ G + V E L +R++
Sbjct: 129 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 188
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L+ +P
Sbjct: 189 EDAGEYTCLAGNSIGISFHSAWLTVLP 215
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++ ++W + +G+ G + V E L +R++
Sbjct: 129 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 188
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L+ +P
Sbjct: 189 EDAGEYTCLAGNSIGISFHSAWLTVLP 215
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++ ++W + +G+ G + V E L +R++
Sbjct: 127 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 186
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L+ +P
Sbjct: 187 EDAGEYTCLAGNSIGISFHSAWLTVLP 213
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++ ++W + +G+ G + V E L +R++
Sbjct: 128 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 187
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L+ +P
Sbjct: 188 EDAGEYTCLAGNSIGISFHSAWLTVLP 214
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++ ++W + +G+ G + V E L +R++
Sbjct: 129 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 188
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L+ +P
Sbjct: 189 EDAGEYTCLAGNSIGISFHSAWLTVLP 215
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIKD 58
E +C VY++ ++W + +G+ G + V E L +R++
Sbjct: 129 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 188
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L+ +P
Sbjct: 189 EDAGEYTCLAGNSIGISFHSAWLTVLP 215
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 12 EIICNVYANPPAKVEWFRDG-------TAITLGGRID---MHVSSEKH---SLLVRHIKD 58
E+ C +P +++W+ +G + + G R+D +H + +H ++ + + +
Sbjct: 40 ELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99
Query: 59 TDFGNYMCQASNN 71
D G Y C+ASN+
Sbjct: 100 EDTGTYECRASND 112
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFGNY C N G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRD---GTAITL---------GGRIDMHVSSEK 48
+H T +R CN + V+WFR G+ I+L GR+ SE+
Sbjct: 13 LHEGTDSALR----CN-FTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSER 67
Query: 49 HSLLVRHIKDT---DFGNYMCQASNNLGSSQ 76
HI+D D G Y C A + GS Q
Sbjct: 68 ARYSTLHIRDAQLEDSGTYFCAAEASSGSWQ 98
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
+ C NP + W ++ T + + + S + L + + ++ D G Y C A N++
Sbjct: 130 MTCKAIGNPTPNIYWIKNQTKVDMS---NPRYSLKDGFLQIENSREEDQGKYECVAENSM 186
Query: 73 GS 74
G+
Sbjct: 187 GT 188
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
+ C NP + W ++ T + + + S + L + + ++ D G Y C A N++
Sbjct: 132 MTCKAIGNPTPNIYWIKNQTKVDMS---NPRYSLKDGFLQIENSREEDQGKYECVAENSM 188
Query: 73 GS 74
G+
Sbjct: 189 GT 190
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 12 EIICNVYANPPAKVEWFRDG-------TAITLGGRID---MHVSSEKH---SLLVRHIKD 58
E+ C +P +++W+ +G + + G R+D +H + +H ++ + + +
Sbjct: 40 ELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99
Query: 59 TDFGNYMCQASNN 71
D G Y C+ASN+
Sbjct: 100 EDTGTYECRASND 112
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 15 CNVYANPPAKVEWFRDGTAITLG-GRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL 72
C + A PP K+ W R+ + RI ++ ++ + +LL++ + D G Y A N
Sbjct: 37 CQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEA 96
Query: 73 G 73
G
Sbjct: 97 G 97
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRL 104
+L + ++ D Y C+ SNNL G+ + + P + +F SS +L G +
Sbjct: 78 TLTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 137
Query: 105 V 105
V
Sbjct: 138 V 138
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRL 104
+L + ++ D Y C+ SNNL G+ + + P + +F SS +L G +
Sbjct: 78 TLTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 137
Query: 105 V 105
V
Sbjct: 138 V 138
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRL 104
+L + ++ D Y C+ SNNL G+ + + P + +F SS +L G +
Sbjct: 78 TLTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 137
Query: 105 V 105
V
Sbjct: 138 V 138
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
I C V P V W + ++ GGR + S L+++ +K+ D G Y C+A+N
Sbjct: 329 IPCKVTGLPAPNVVWSHNAKPLS-GGRATVTDSG----LVIKGVKNGDKGYYGCRATNEH 383
Query: 73 G 73
G
Sbjct: 384 G 384
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKS 93
R S + SL + ++ DFGNY CQ G+ + + P + +F S
Sbjct: 61 RFSGSGSGTQFSLKISSLQPEDFGNYYCQHHYGTRTFGGGTRLEIKRADAAPTVSIFPPS 120
Query: 94 SRRLGPDGYRLV 105
S +L G +V
Sbjct: 121 SEQLTSGGASVV 132
>pdb|1GHF|L Chain L, Anti-Anti-Idiotype Gh1002 Fab Fragment
Length = 211
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 49 HSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGY 102
+SL + +++ DF Y CQ N L G+ + + + +F SS +L G
Sbjct: 71 YSLTISNLEQEDFATYFCQQGNTLPYTFGGGTKLEIKRADAAQTVSIFPPSSEQLTSGGA 130
Query: 103 RLV 105
+V
Sbjct: 131 SVV 133
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ D NY CQ SN G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
Length = 214
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQSEDFGSYYCQHFWGNPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ D NY CQ SN G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 45 SSEKHSLLVRHIKDTDFGNYMCQA--SN----NLGSSQQFIQLSGIPNIPVFQKSSRRLG 98
S ++L + ++ D G Y CQ SN G+ + + P + +F SS +LG
Sbjct: 73 SGTDYTLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTVSIFPPSSEQLG 132
Query: 99 PDGYRLVWQVDTY 111
LV V+ +
Sbjct: 133 TGSATLVCFVNNF 145
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ------ASNNLGSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLELKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1HYS|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 214
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 45 SSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG 98
S +SL + +++ DF Y CQ + G+ + + P + +F SS +L
Sbjct: 67 SGTDYSLTISNLEPEDFATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 99 PDGYRLV 105
G +V
Sbjct: 127 SGGASVV 133
>pdb|2HMI|C Chain C, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1J5O|L Chain L, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 214
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 45 SSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG 98
S +SL + +++ DF Y CQ + G+ + + P + +F SS +L
Sbjct: 67 SGTDYSLTISNLEPEDFATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 99 PDGYRLV 105
G +V
Sbjct: 127 SGGASVV 133
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ------ASNNLGSSQQFIQLSGIPNIPVFQK 92
R S + SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPLTFGAGTKLELKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRD---GTAITL---------GGRIDMHVSSEK 48
+H T +R CN + V+WFR G+ I+L GR+ S++
Sbjct: 13 LHEGTDSALR----CN-FTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKE 67
Query: 49 HSLLVRHIKDT---DFGNYMCQASNNLGSSQ 76
HI+D D G Y C A + GS Q
Sbjct: 68 RRYSTLHIRDAQLEDSGTYFCAAEASSGSWQ 98
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ------ASNNLGSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 20/113 (17%)
Query: 13 IICNVYANPPAKVEWFRDG----------TAITLG----GRIDMHVSSEKHSLLVRHIKD 58
I C N + + W++ A TLG R S + SL + ++
Sbjct: 21 ITCRASKNIYSYLAWYQQKQGKSPQLLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLQP 80
Query: 59 TDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
DFG+Y CQ G+ + + P + +F SS +L G +V
Sbjct: 81 EDFGSYYCQHHYGTPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
A + N A VEW + + G R + K L +R + D G Y C
Sbjct: 24 ATAVLQCELNSAAPVEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSC 79
>pdb|3O0R|L Chain L, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 213
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 31 GTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLS 82
G+ + G R S + +L + ++ DF Y CQ N G+ + +
Sbjct: 51 GSTLQFGIPSRFSGSGSGTEFTLTISSLEPEDFAMYYCQQHNEYPLTFGAGTKLELKRAD 110
Query: 83 GIPNIPVFQKSSRRLGPDGYRLV 105
P + +F SS +L G +V
Sbjct: 111 AAPTVSIFPPSSEQLTSGGASVV 133
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C P + W++ G + + +L + ++ + D G Y C ASN +GS
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 75 SQQFIQL 81
+ I +
Sbjct: 301 IRHTISV 307
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAI-TLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
I AP ++C NP V+W +G + + + V+ + +++ R + +
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRA 380
Query: 63 NYMCQASNNLG 73
Y C SN G
Sbjct: 381 VYQCNTSNEHG 391
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 23 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A ++W + ++ L R M +S L + IK D G Y C+ SN
Sbjct: 139 ANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT---DFGNYMCQASNN 71
C+V P ++ W +G I S+ + + HI+D D G Y C A N
Sbjct: 33 CSVRGTPVPRITWLLNGQPIQYA------RSTCEAGVAELHIQDALPEDHGTYTCLAENA 86
Query: 72 LG 73
LG
Sbjct: 87 LG 88
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain
From Human Cdna
Length = 113
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R + C + P A+V W +DG + + + L++ ++ D G Y+C+
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID 88
Query: 70 NNLGS 74
+ S
Sbjct: 89 DESAS 93
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 23 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A ++W + ++ L R M +S L + IK D G Y C+ SN
Sbjct: 139 ANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 23 AKVEWFR------DGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQA 68
+ W+R + I++GGR D V S+ SL + ++ D G Y CQA
Sbjct: 32 SSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 12 EIICNVYANPPAKVEWFR-----------DGTA-ITLGGRIDMHVSSEKHSLLVRH-IKD 58
E C VY++ ++W + DGT +T+ + + ++ +L H +
Sbjct: 241 EFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTF 300
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIP 85
D G Y C A N++G S L +P
Sbjct: 301 EDAGEYTCLAGNSIGFSHHSAWLVVLP 327
>pdb|1P2C|A Chain A, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|D Chain D, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|2Q76|A Chain A, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|C Chain C, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 212
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y CQ S + G+ + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGVYFCQQSGSWPRTFGGGTKLDIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 23 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
A VEW++ + G R + + L +R + D G Y+C S+ + +
Sbjct: 47 APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSA--MLTVR 104
Query: 83 GIPNIP 88
+P+ P
Sbjct: 105 AMPSGP 110
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S +L + ++ DF Y CQ N+ G+ + + P + +F
Sbjct: 61 RFSGSGSGTDFTLTISRLEPEDFAMYYCQQHNDYPLTFGAGTKLELKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3VG9|B Chain B, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|B Chain B, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 214
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 92
R S + SL + ++ DFG Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINRLQPEDFGTYYCQHFYGSTWAFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3R06|A Chain A, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|C Chain C, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|E Chain E, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|L Chain L, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R08|L Chain L, Crystal Structure Of Mouse Cd3epsilon In Complex With
Antibody 2c11 Fab
Length = 213
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 16 NVYANPPAKVE----WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
N Y P K ++ + A + R S S + ++ D G+Y CQ N
Sbjct: 34 NWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYN 93
Query: 72 L------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY 111
G+ + + P + +F SS +LG LV V+ +
Sbjct: 94 YPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNF 139
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 6 APDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
AP E+ C + A P V W +D AI + D+ L++R D G Y
Sbjct: 21 APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEY 78
Query: 65 MCQASNNLGSSQQFIQ 80
C+ + ++ ++
Sbjct: 79 TCEVEASKSTASLHVE 94
>pdb|1KNO|A Chain A, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|C Chain C, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|E Chain E, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 214
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 10 RAEIICNVYANPPAKVEWFR---DGT-------AITLGG----RIDMHVSSEKHSLLVRH 55
R + C + W + DGT A TL R S +SL +
Sbjct: 18 RVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISS 77
Query: 56 IKDTDFGNYMC--QASNNL----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
++ DF +Y C AS+ G+ + ++ P + +F SS +L G +V
Sbjct: 78 LESEDFADYYCLQYASSPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|3ET9|F Chain F, Crystal Structure Of The Engineered Neutralizing
Antibody 1h
Length = 252
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
R S +SL + +++ D G Y CQ N L
Sbjct: 66 RFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTL 99
>pdb|3ESU|F Chain F, Crystal Structure Of Anthrax-Neutralizing Single-Chain
Antibody 14b7
Length = 250
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
R S +SL + +++ D G Y CQ N L
Sbjct: 64 RFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTL 97
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-------SNNLGSSQQFIQLSGIPNIPVFQ 91
R S + SL + ++ DFG+Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGSPPWTFGGGTKLEIKRADAAPTVSIFP 120
Query: 92 KSSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 PSSEQLTSGGASVV 134
>pdb|3LC6|A Chain A, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LC6|B Chain B, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LCB|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli
Length = 578
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 17 VYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
VYA P A VEW R+ + M + +KH+ K + Y+ G +
Sbjct: 259 VYAPLPAALVEWLREILPGKTTAELYMAIGCQKHA------KTESYREYLVYLQ---GCN 309
Query: 76 QQFIQLSGI 84
+QFI+ GI
Sbjct: 310 EQFIEAPGI 318
>pdb|3EPS|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
pdb|3EPS|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
Length = 578
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 17 VYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
VYA P A VEW R+ + M + +KH+ K + Y+ G +
Sbjct: 259 VYAPLPAALVEWLREILPGKTTAELYMAIGCQKHA------KTESYREYLVYLQ---GCN 309
Query: 76 QQFIQLSGI 84
+QFI+ GI
Sbjct: 310 EQFIEAPGI 318
>pdb|3CXD|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With Its Epitope Peptide
pdb|3DSF|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With W43a Mutated Epitope Peptide
Length = 213
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 92
R S + SL + ++ DFG Y CQ + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQFSLKINSLQSEDFGTYYCQHFWGTPFTFGSGTKLEIKRSDAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
S+ +L G +V
Sbjct: 121 SAAQLSSGGGSVV 133
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
AP + C V A P ++ W +DG + L++ I D G Y
Sbjct: 23 APGGTVTLTCEVPAQPSPQIHWMKDGVPLP---------LPPSPVLILPEIGPQDQGTYS 73
Query: 66 CQASNN 71
C A+++
Sbjct: 74 CVATHS 79
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 34 ITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQA 68
I++GGR V S SL +R ++ D G Y C+A
Sbjct: 49 ISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKA 85
>pdb|3G5Y|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 38 GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQ 91
GR S +SL + + DF +Y C G+S + + P + +F
Sbjct: 60 GRFSGSGSGADYSLTISSLSSEDFVDYYCVQYGQFPWTFGGGTSLEIKRADAAPTVSIFP 119
Query: 92 KSSRRLGPDGYRLV 105
S+ +L G +V
Sbjct: 120 PSTEQLTSGGASVV 133
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
AP + C V A P ++ W +DG + L++ I D G Y
Sbjct: 16 APGGTVTLTCEVPAQPSPQIHWMKDGVPLP---------LPPSPVLILPEIGPQDQGTYS 66
Query: 66 CQASNNLGSSQQ 77
C A+++ Q+
Sbjct: 67 CVATHSSHGPQE 78
>pdb|2VXV|L Chain L, Crystal Structure Of Human Igg Abt-325 Fab Fragment
Length = 214
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 35/139 (25%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGT--------------AITLGGRIDMHVSSEKHSL 51
+P RA + C + + + W++ A + R S + +L
Sbjct: 14 SPGERATLSCRASESISSNLAWYQQKPGQAPRLFIYTASTRATDIPARFSGSGSGTEFTL 73
Query: 52 LVRHIKDTDFGNYMCQASNNL-------GSSQQFIQLSGIPNIPVFQKSSRRLG------ 98
+ ++ DF Y CQ NN G+ + + P++ +F S +L
Sbjct: 74 TISSLQSEDFAVYYCQQYNNWPSITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASV 133
Query: 99 --------PDGYRLVWQVD 109
P ++ W+VD
Sbjct: 134 VCLLNNFYPREAKVQWKVD 152
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 11 AEIICNVYANPPAKVEWF---RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
+ +C +PP + W + + GR+ + +L VR+ + D G Y+C
Sbjct: 403 VQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGTYLCI 459
Query: 68 ASNNLGS 74
A+N G+
Sbjct: 460 AANAGGN 466
>pdb|3KR3|L Chain L, Crystal Structure Of Igf-Ii Antibody Complex
Length = 215
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 24/118 (20%)
Query: 16 NVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
N Y P K TA TL R S +L + ++ DF Y CQ S N
Sbjct: 35 NWYQQKPGKAPKLLIYTASTLQSGVPSRFSGSASGTDFTLTINSLQPEDFATYSCQQSYN 94
Query: 72 ------LGSSQQFIQLSGIPNIPVFQKSSRRLG--------------PDGYRLVWQVD 109
G+ + + P++ +F S +L P ++ W+VD
Sbjct: 95 SPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVD 152
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
+P + W ++ +A T+ G + + ++ +L + D G Y+C N +
Sbjct: 51 VSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS 110
Query: 79 IQLSGIPNIPVF 90
I+L N F
Sbjct: 111 IELRVFENTDAF 122
>pdb|2B2X|L Chain L, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of
The Aqc2 Fab
pdb|2B2X|M Chain M, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of
The Aqc2 Fab
Length = 213
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNN-----LGSSQQFIQLSGIPNIPVFQK 92
R S ++L + ++ DF Y CQ S N G+ + + P + +F
Sbjct: 60 RFSGSGSGTDYTLTISSLQPEDFATYYCQQWSGNPWTFGQGTKVEIKRADAAPTVSIFPP 119
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 120 SSEQLTSGGASVV 132
>pdb|3EOT|L Chain L, Crystal Structure Of Lac031, An Engineered Anti-Vla1 Fab
Length = 215
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNN-----LGSSQQFIQLSGIPNIPVFQK 92
R S ++L + ++ DF Y CQ S N G+ + + P + +F
Sbjct: 62 RFSGSGSGTDYTLTISSLQPEDFATYYCQQISGNPWTFGQGTKVEIKRADAAPTVSIFPP 121
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 122 SSEQLTSGGASVV 134
>pdb|2GFB|A Chain A, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|C Chain C, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|E Chain E, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|G Chain G, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|I Chain I, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|K Chain K, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|M Chain M, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|O Chain O, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
Length = 214
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 10 RAEIICNVYANPPAKVEWFR---DGT-------AITLGG----RIDMHVSSEKHSLLVRH 55
R + C + W + DGT A TL R S +SL +
Sbjct: 18 RVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISS 77
Query: 56 IKDTDFGNYMC--QASNNL----GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
++ DF +Y C AS+ G+ + ++ P + +F SS +L G +V
Sbjct: 78 LESEDFADYYCLQYASSPYTFGGGTKLEILRGGAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment Complexed
With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA------SNNLGSSQQFIQLSGIPNIPVFQK 92
R S ++SL + ++ DFG Y C + G+ + + P + +F
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGTYYCHHFWSTPWTFGGGTKLEVKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 19 ANPPAKVEWFR------DGTAITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
A+ + +W+R + I++GGR ++ S+ SL +R ++ D G Y C A
Sbjct: 28 ADDLERTDWYRTTLGSTNEQKISIGGRYVETVNKGSKSFSLRIRDLRVEDSGTYKCGA 85
>pdb|3G5Z|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 31 GTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLS 82
GT ++ G R S +SL + ++ DF +Y C G+ + +
Sbjct: 51 GTNLSDGVPSRFSGSGSGADYSLTISSLESEDFADYYCVQYAQFPWTFGGGTKLEIARAD 110
Query: 83 GIPNIPVFQKSSRRLGPDGYRLV 105
P + +F SS +L G +V
Sbjct: 111 AAPTVSIFPPSSEQLTSGGASVV 133
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 27 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
W++DG + + + + KH L++ K D G + C+
Sbjct: 43 WYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT 84
>pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex
pdb|1CT8|C Chain C, Catalytic Antibody 7c8 Complex
Length = 214
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASN------NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
+L + ++ DFG Y C ++ G+ + + P + +F SS +L G
Sbjct: 72 TLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|2DTG|D Chain D, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
pdb|3LOH|D Chain D, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
pdb|3W14|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|Q Chain Q, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 214
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMC-QASNNL-----GSSQQFIQLSGIPNIPVFQK 92
R S +SL + +K DF +Y C Q S++ G+ + + P + +F
Sbjct: 61 RFSGSRSGSDYSLTISSLKSEDFVDYYCLQYSSSPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin
Binding Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
A+P +V+W+++G I + + L + + + TD Y A + S++ F
Sbjct: 33 ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTELF 92
Query: 79 IQ 80
++
Sbjct: 93 VR 94
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 38 GRIDMHVSSEKH---SLLVRHIKDTDFGNYMCQASNNLGSSQQ 77
GRI + + S+++ ++ +D G Y+CQA ++ S+++
Sbjct: 171 GRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKK 213
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 214
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S ++L + ++ DF Y CQ N L G+ + + P++ +F
Sbjct: 61 RFSGSGSGTDYTLTISSLQPEDFATYYCQQGNTLPPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 93 SSRRL 97
S +L
Sbjct: 121 SDEQL 125
>pdb|1RZ7|L Chain L, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 48d
pdb|4DVR|L Chain L, Crystal Structure Of Yu2 Gp120 Core In Complex With Fab
48d And Nbd- 557
Length = 212
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKS 93
R S SL + ++ DF Y CQ +N+ G+ + + P++ +F S
Sbjct: 61 RFSGSGSGTDFSLTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPS 120
Query: 94 SRRL 97
+L
Sbjct: 121 DEQL 124
>pdb|3JWD|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|O Chain O, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 213
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKS 93
R S SL + ++ DF Y CQ +N+ G+ + + P++ +F S
Sbjct: 61 RFSGSGSGTDFSLTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPS 120
Query: 94 SRRL 97
+L
Sbjct: 121 DEQL 124
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A + C V ++ A V+W + G + + L+VR+++ D G Y C +
Sbjct: 26 ATLRC-VLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQDSGRYSCSFGD 84
Query: 71 NLGSSQQFIQLSGIPNIP 88
S+ + ++ +P+ P
Sbjct: 85 QTTSAT--LTVTALPSGP 100
>pdb|1A7Q|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) High Affinity Expressed Variant Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 106
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 22 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
P + ++ A + R S ++SL + ++ DFG+Y CQ
Sbjct: 44 PQLLVYYTTTLAAGVPSRFSGSGSGTQYSLKINSLQPDDFGSYYCQ 89
>pdb|3JWO|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 209
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSGIPNIPVFQKS 93
R S SL + ++ DF Y CQ +N+ G+ + + P++ +F S
Sbjct: 61 RFSGSGSGTDFSLTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPS 120
Query: 94 SRRL 97
+L
Sbjct: 121 DEQL 124
>pdb|3ESV|F Chain F, Crystal Structure Of The Engineered Neutralizing
Antibody M18
pdb|3ESV|G Chain G, Crystal Structure Of The Engineered Neutralizing
Antibody M18
pdb|3ETB|F Chain F, Crystal Structure Of The Engineered Neutralizing
Antibody M18 Complexed With Anthrax Protective Antigen
Domain 4
pdb|3ETB|G Chain G, Crystal Structure Of The Engineered Neutralizing
Antibody M18 Complexed With Anthrax Protective Antigen
Domain 4
pdb|3ETB|H Chain H, Crystal Structure Of The Engineered Neutralizing
Antibody M18 Complexed With Anthrax Protective Antigen
Domain 4
pdb|3ETB|I Chain I, Crystal Structure Of The Engineered Neutralizing
Antibody M18 Complexed With Anthrax Protective Antigen
Domain 4
Length = 252
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
R S +SL + +++ D G Y CQ N
Sbjct: 66 RFSGSGSGTDYSLTINNLEQEDIGTYFCQQGN 97
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S + +L + ++ DFG Y CQ SN+
Sbjct: 197 RFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS 229
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A + C V ++ A V+W + G + + L+VR+++ D G Y C +
Sbjct: 26 ATLRC-VLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGD 84
Query: 71 NLGSSQQFIQLSGIPNIP 88
S+ + ++ +P+ P
Sbjct: 85 QTTSAT--LTVTALPSGP 100
>pdb|1BBJ|L Chain L, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|A Chain A, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 211
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQSEDFGSYYCQ 89
>pdb|3A6B|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln32d Complexed
With White Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|3A67|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln31d Complexed
With White Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1J1O|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ly50f Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|2ZG2|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Native
Siglec-5
Length = 216
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 18 YANPPAKVEWFRDG 31
Y++PP V WFRDG
Sbjct: 33 YSSPPLYVYWFRDG 46
>pdb|1C08|A Chain A, Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
pdb|1IC4|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a)-Hen
Lysozyme Complex
pdb|1IC5|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd99a)-Hen
Lysozyme Complex
pdb|1IC7|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen
Lysozyme Complex
pdb|1UA6|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Hen Egg White Lysozyme Complex
pdb|1UAC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Turkey White Lysozyme
pdb|2DQC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hy33f) Complexed
With Hen Egg Lysozyme
pdb|2DQD|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy50f)
Complexed With Hen Egg Lysozyme
pdb|2DQE|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|A Chain A, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|D Chain D, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQG|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53f)
Complexed With Hen Egg Lysozyme
pdb|2DQH|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy58a)
Complexed With Hen Egg Lysozyme
pdb|2DQJ|L Chain L, Crystal Structure Of Hyhel-10 Fv (Wild-Type) Complexed
With Hen Egg Lysozyme At 1.8a Resolution
Length = 107
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|2ZNW|A Chain A, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
pdb|2ZNW|B Chain B, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
Length = 242
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1KIR|A Chain A, Fv Mutant Y(A 50)s (Vl Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 33 AITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+I++GGR ++ S+ SL + ++ D G Y CQA
Sbjct: 48 SISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2DQI|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Ly50a)
Complexed With Hen Egg Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|2ZG1|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Siglec-5
In Complex With 6'-Sialyllactose
pdb|2ZG3|A Chain A, Crystal Structure Of Two N-terminal Domains Of Native
Siglec-5 In Complex With 3'-sialyllactose
Length = 214
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 18 YANPPAKVEWFRDG 31
Y++PP V WFRDG
Sbjct: 32 YSSPPLYVYWFRDG 45
>pdb|1KIP|A Chain A, Fv Mutant Y(B 32)a (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1KIQ|A Chain A, Fv Mutant Y(B 101)f (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1A2Y|A Chain A, Hen Egg White Lysozyme, D18a Mutant, In Complex With
Mouse Monoclonal Antibody D1.3
pdb|1VFB|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
Length = 107
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 33 AITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+I++GGR ++ S+ SL + ++ D G Y CQA
Sbjct: 48 SISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|1VFA|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
pdb|1DVF|A Chain A, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic
Antibody E5.2 Fv Fragment Complex
Length = 108
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 33 AITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+I++GGR ++ S+ SL + ++ D G Y CQA
Sbjct: 48 SISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|1J1X|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ls93a Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
R S +L + ++ DFG Y CQ SN
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|4HC1|L Chain L, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2 Complexed With Fab 10g3
pdb|4HC1|N Chain N, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2 Complexed With Fab 10g3
Length = 214
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMC------QASNNLGSSQQFIQLSGIPNIPVFQK 92
R S +SL + I+ DF +Y C + G+ + + P + +F
Sbjct: 61 RFSGSGSGADYSLTISRIESEDFADYYCIQYVQFPYTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|1A7N|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant For Chain L Glu81->asp And Chain H
Leu312->val
pdb|1A7R|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant Chain L Glu81->asp
Length = 107
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPDDFGSYYCQ 89
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96l Deletion Mutant On Variant For Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPDDFGSYYCQ 89
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 23 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
A VEW + + GGR + + L + + D G Y C
Sbjct: 36 APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSC 79
>pdb|2WUB|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|Q Chain Q, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 214
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 34/134 (25%)
Query: 10 RAEIICNVYANPPAKVEWF--RDGTAITL------------GGRIDMHVSSEKHSLLVRH 55
R I C + V W+ + G A L R S +L +
Sbjct: 18 RVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISS 77
Query: 56 IKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG----------- 98
++ DF Y CQ SN G+ + + P++ +F S +L
Sbjct: 78 LQPEDFATYYCQQSNRAPATFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN 137
Query: 99 ---PDGYRLVWQVD 109
P ++ W+VD
Sbjct: 138 NFYPREAKVQWKVD 151
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 33 AITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+I++GGR ++ S+ SL + ++ D G Y CQA
Sbjct: 48 SISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2ZNX|A Chain A, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
pdb|2ZNX|B Chain B, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
Length = 242
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
R S +L + ++ DFG Y CQ SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 22 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
P + ++ A + R S ++SL + ++ DFG+Y CQ
Sbjct: 44 PQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 9 MRAEIICNVYANPPAKVEWFR-DGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
M AE+ C + V W +GT +T G ++ + V S+ +L ++ D G Y C
Sbjct: 357 MAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG-TLNFTNVTVQDTGMYTC 414
Query: 67 QASNNLGSS 75
SN++G++
Sbjct: 415 MVSNSVGNT 423
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSGSGTQYSLKINSLQPDDFGSYYCQ 89
>pdb|3IVK|L Chain L, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
pdb|3IVK|B Chain B, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
Length = 213
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 35/124 (28%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
AP + ++Y+ P++ R GT TL + ++ DF Y
Sbjct: 44 APKLLIYSASSLYSGVPSRFSGSRSGTDFTL---------------TISSLQPEDFATYY 88
Query: 66 CQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG--------------PDGYRLV 105
CQ S + G+ + + P++ +F S +L P ++
Sbjct: 89 CQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQ 148
Query: 106 WQVD 109
W+VD
Sbjct: 149 WKVD 152
>pdb|3HNS|L Chain L, Cs-35 Fab Complex With Oligoarabinofuranosyl
Hexasaccharide
pdb|3HNT|L Chain L, Cs-35 Fab Complex With A Linear, Terminal
Oligoarabinofuranosyl Tetrasaccharide From
Lipoarabinomannan
pdb|3HNV|L Chain L, Cs-35 Fab Complex With Oligoarabinofuranosyl
Tetrasaccharide (Branch Part Of Hexasaccharide)
Length = 214
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 50 SLLVRHIKDTDFGNYMCQASNN------LGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 103
SL + +++ D G Y C G+ + + P + +F SS +L G
Sbjct: 72 SLTISNLEQEDIGTYFCHQDTKPPYTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGAS 131
Query: 104 LV 105
+V
Sbjct: 132 VV 133
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
R S ++SL + ++ DFG+Y CQ
Sbjct: 61 RFSGSESGTQYSLKINSLQPEDFGSYYCQ 89
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 35/124 (28%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
AP + ++Y+ P++ R GT TL + ++ DF Y
Sbjct: 44 APKLLIYSASSLYSGVPSRFSGSRSGTDFTL---------------TISSLQPEDFATYY 88
Query: 66 CQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLG--------------PDGYRLV 105
CQ S+ + G+ + + P++ +F S +L P ++
Sbjct: 89 CQQSSYIPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQ 148
Query: 106 WQVD 109
W+VD
Sbjct: 149 WKVD 152
>pdb|3NCJ|L Chain L, Crystal Structure Of Fab15 Mut8
Length = 214
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S +L + ++ DF Y CQ N L G+ + + P++ +F
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQGNTLPYTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 93 SSRRL 97
S +L
Sbjct: 121 SDEQL 125
>pdb|1C12|A Chain A, Insight In Odorant Perception: The Crystal Structure And
Binding Characteristics Of Antibody Fragments Directed
Against The Musk Odorant Traseolide
Length = 214
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMC----QASNNLGSSQQF--IQLSGIPNIPVFQK 92
R S +SL + ++ DF +Y C Q GS + + P + +F
Sbjct: 61 RFSGSGSGADYSLTISSLESEDFADYYCVQYVQFPFTFGSGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3G5X|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
pdb|3G5X|C Chain C, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 214
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S +SL + ++ DF +Y C G+ + + P + +F
Sbjct: 61 RFSGSGSGADYSLTISSLESEDFADYYCVQYAQFPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3NA9|L Chain L, Crystal Structure Of Fab15
pdb|3NAA|L Chain L, Crystal Structure Of Fab15 Mut5
pdb|3NAB|L Chain L, Crystal Structure Of Fab15 Mut6
pdb|3NAC|L Chain L, Crystal Structure Of Fab15 Mut7
pdb|3ULU|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 214
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S +L + ++ DF Y CQ N L G+ + + P++ +F
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQGNTLSYTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 93 SSRRL 97
S +L
Sbjct: 121 SDEQL 125
>pdb|3G5V|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 212
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQK 92
R S +SL + ++ DF +Y C G+ + + P + +F
Sbjct: 61 RFSGSGSGADYSLTISSLESEDFADYYCVQYAQFPWTFGGGTKLEIKRADAAPTVSIFPP 120
Query: 93 SSRRLGPDGYRLV 105
SS +L G +V
Sbjct: 121 SSEQLTSGGASVV 133
>pdb|3BGF|L Chain L, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
pdb|3BGF|C Chain C, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
Length = 212
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 20/116 (17%)
Query: 10 RAEIICNVYANPPAKVEWFR---DGT-------AITLGG----RIDMHVSSEKHSLLVRH 55
R + C + W + DGT A TL R S +SL +
Sbjct: 18 RVSLTCRASQEISGYLSWLQEKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISS 77
Query: 56 IKDTDFGNYMCQASNNL------GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
++ DF +Y C + G+ + + P + +F SS +L G +V
Sbjct: 78 LESEDFADYYCLQYVSYPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 133
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/60 (16%), Positives = 25/60 (41%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79
P ++ W +D + R+++ K + + + D G Y C ++ G + ++
Sbjct: 29 TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,922,664
Number of Sequences: 62578
Number of extensions: 148407
Number of successful extensions: 908
Number of sequences better than 100.0: 219
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 284
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)