Query psy12132
Match_columns 126
No_of_seqs 134 out of 1914
Neff 11.9
Searched_HMMs 46136
Date Fri Aug 16 19:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 7.7E-20 1.7E-24 95.3 12.0 84 2-85 9-92 (98)
2 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 8.1E-19 1.8E-23 89.4 12.2 82 2-83 4-86 (86)
3 cd05737 Ig_Myomesin_like_C C-t 99.8 1E-18 2.2E-23 90.3 11.8 81 3-83 11-92 (92)
4 cd05745 Ig3_Peroxidasin Third 99.8 3.8E-19 8.2E-24 88.3 9.6 74 7-83 1-74 (74)
5 cd05852 Ig5_Contactin-1 Fifth 99.8 5E-19 1.1E-23 87.5 9.8 73 8-83 1-73 (73)
6 cd05747 Ig5_Titin_like M5, fif 99.8 4E-18 8.7E-23 88.0 11.9 80 2-81 12-91 (92)
7 cd04975 Ig4_SCFR_like Fourth i 99.8 4.1E-18 9E-23 89.0 11.2 82 2-83 12-99 (101)
8 cd05748 Ig_Titin_like Immunogl 99.8 9.1E-18 2E-22 83.4 11.5 74 10-83 1-74 (74)
9 PF07679 I-set: Immunoglobulin 99.8 8.6E-18 1.9E-22 86.5 11.7 82 2-83 9-90 (90)
10 cd05723 Ig4_Neogenin Fourth im 99.8 7.8E-18 1.7E-22 82.9 10.9 71 10-83 1-71 (71)
11 cd04972 Ig_TrkABC_d4 Fourth do 99.8 2.1E-17 4.6E-22 85.0 12.6 81 2-82 9-89 (90)
12 cd04969 Ig5_Contactin_like Fif 99.8 6.7E-18 1.5E-22 83.6 10.1 73 8-83 1-73 (73)
13 cd05892 Ig_Myotilin_C C-termin 99.8 8.7E-18 1.9E-22 83.3 10.4 73 11-83 1-75 (75)
14 cd05851 Ig3_Contactin-1 Third 99.8 5.6E-18 1.2E-22 86.7 9.4 78 2-83 10-87 (88)
15 cd05728 Ig4_Contactin-2-like F 99.8 3E-17 6.6E-22 83.5 10.4 78 2-83 8-85 (85)
16 cd05891 Ig_M-protein_C C-termi 99.8 6.6E-17 1.4E-21 83.4 11.7 82 2-83 10-92 (92)
17 cd05893 Ig_Palladin_C C-termin 99.8 4.2E-17 9.2E-22 80.9 10.4 73 11-83 1-75 (75)
18 cd05859 Ig4_PDGFR-alpha Fourth 99.8 3.9E-17 8.4E-22 85.5 10.7 81 3-83 13-99 (101)
19 cd05735 Ig8_DSCAM Eight immuno 99.8 8.6E-17 1.9E-21 82.3 11.7 78 8-85 1-83 (88)
20 cd05730 Ig3_NCAM-1_like Third 99.8 6E-17 1.3E-21 84.2 11.2 80 3-84 13-93 (95)
21 cd05743 Ig_Perlecan_D2_like Im 99.8 4.9E-17 1.1E-21 81.5 10.4 72 8-79 1-72 (78)
22 cd05744 Ig_Myotilin_C_like Imm 99.8 7.1E-17 1.5E-21 80.3 10.7 73 11-83 1-75 (75)
23 cd05866 Ig1_NCAM-2 First immun 99.8 1.3E-16 2.8E-21 82.1 11.8 80 2-82 9-90 (92)
24 cd05746 Ig4_Peroxidasin Fourth 99.8 2.2E-17 4.8E-22 80.9 8.5 68 11-81 1-68 (69)
25 cd05867 Ig4_L1-CAM_like Fourth 99.8 1.2E-16 2.7E-21 79.7 11.2 72 8-83 1-75 (76)
26 cd05857 Ig2_FGFR Second immuno 99.8 1.4E-16 3E-21 81.1 11.6 81 3-83 4-85 (85)
27 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.2E-16 2.7E-21 83.4 11.1 81 2-82 10-97 (98)
28 cd05865 Ig1_NCAM-1 First immun 99.7 1.4E-16 3.1E-21 82.6 11.1 81 3-83 10-95 (96)
29 cd04968 Ig3_Contactin_like Thi 99.7 1.4E-16 3E-21 81.6 10.8 78 2-83 10-87 (88)
30 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.6E-16 3.5E-21 82.7 11.0 81 2-82 10-95 (96)
31 cd05868 Ig4_NrCAM Fourth immun 99.7 1.7E-16 3.7E-21 79.1 10.6 74 8-83 1-75 (76)
32 cd04978 Ig4_L1-NrCAM_like Four 99.7 9.7E-17 2.1E-21 80.1 9.8 75 8-83 1-75 (76)
33 cd05876 Ig3_L1-CAM Third immun 99.7 1.1E-16 2.4E-21 78.8 8.7 70 11-83 1-70 (71)
34 cd05863 Ig2_VEGFR-3 Second imm 99.7 1E-16 2.2E-21 77.6 8.4 65 11-83 1-65 (67)
35 cd05764 Ig_2 Subgroup of the i 99.7 3.4E-16 7.4E-21 77.7 10.4 73 8-83 1-74 (74)
36 cd05869 Ig5_NCAM-1 Fifth immun 99.7 5.4E-16 1.2E-20 80.8 11.5 78 6-83 15-97 (97)
37 cd05854 Ig6_Contactin-2 Sixth 99.7 7.6E-16 1.6E-20 78.3 11.4 77 9-85 1-83 (85)
38 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 5E-16 1.1E-20 78.2 10.2 70 13-82 3-79 (81)
39 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 5.6E-16 1.2E-20 75.7 9.5 68 8-81 1-68 (69)
40 cd05726 Ig4_Robo Fhird immunog 99.7 4.2E-16 9.1E-21 80.2 9.2 74 8-84 1-82 (90)
41 cd05736 Ig2_Follistatin_like S 99.7 6.7E-16 1.4E-20 77.0 9.6 74 11-84 1-74 (76)
42 cd04976 Ig2_VEGFR Second immun 99.7 4E-16 8.6E-21 76.8 8.3 69 11-83 1-69 (71)
43 cd05856 Ig2_FGFRL1-like Second 99.7 5.8E-16 1.3E-20 78.3 9.2 79 2-82 3-81 (82)
44 cd04973 Ig1_FGFR First immunog 99.7 9E-16 2E-20 77.0 9.4 76 2-82 3-78 (79)
45 cd05725 Ig3_Robo Third immunog 99.7 8.7E-16 1.9E-20 75.2 9.0 69 11-83 1-69 (69)
46 cd05855 Ig_TrkB_d5 Fifth domai 99.7 1.5E-15 3.1E-20 75.8 9.8 70 13-82 3-77 (79)
47 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.7E-15 3.6E-20 77.9 10.4 78 2-83 12-90 (91)
48 cd05773 Ig8_hNephrin_like Eigh 99.7 3E-15 6.6E-20 79.5 11.4 80 6-85 21-106 (109)
49 cd05864 Ig2_VEGFR-2 Second imm 99.7 7.4E-16 1.6E-20 75.4 8.4 67 11-82 1-67 (70)
50 cd05724 Ig2_Robo Second immuno 99.7 2.2E-15 4.7E-20 76.9 10.4 72 2-76 5-78 (86)
51 cd04970 Ig6_Contactin_like Six 99.7 2.8E-15 6E-20 76.3 10.6 77 9-85 1-83 (85)
52 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 1.7E-15 3.8E-20 75.1 9.4 69 11-82 1-72 (74)
53 cd05853 Ig6_Contactin-4 Sixth 99.7 1.9E-15 4E-20 76.4 9.5 76 9-84 1-82 (85)
54 cd05758 Ig5_KIRREL3-like Fifth 99.7 4.5E-15 9.8E-20 77.5 11.1 80 2-81 10-97 (98)
55 cd05763 Ig_1 Subgroup of the i 99.7 1.5E-15 3.3E-20 75.5 8.6 71 11-83 1-74 (75)
56 cd05731 Ig3_L1-CAM_like Third 99.7 1.7E-15 3.6E-20 74.6 8.6 70 11-83 1-70 (71)
57 cd05760 Ig2_PTK7 Second immuno 99.7 5.1E-15 1.1E-19 74.0 9.8 71 11-83 1-74 (77)
58 cd05722 Ig1_Neogenin First imm 99.7 7.9E-15 1.7E-19 76.1 10.6 78 2-82 8-94 (95)
59 cd05756 Ig1_IL1R_like First im 99.7 1.4E-15 3.1E-20 78.6 7.7 80 2-83 8-94 (94)
60 cd07693 Ig1_Robo First immunog 99.7 1E-14 2.2E-19 76.3 11.0 81 2-82 10-98 (100)
61 cd05848 Ig1_Contactin-5 First 99.7 9.4E-15 2E-19 75.7 10.6 67 7-76 18-86 (94)
62 cd05750 Ig_Pro_neuregulin Immu 99.6 3.6E-15 7.8E-20 74.2 8.6 70 11-80 1-74 (75)
63 cd04977 Ig1_NCAM-1_like First 99.6 2.1E-14 4.5E-19 74.1 11.5 80 2-82 9-91 (92)
64 cd05858 Ig3_FGFR-2 Third immun 99.6 6.7E-15 1.4E-19 75.7 9.5 76 8-83 1-89 (90)
65 KOG3513|consensus 99.6 1.5E-14 3.3E-19 98.8 13.7 116 2-124 340-463 (1051)
66 cd05765 Ig_3 Subgroup of the i 99.6 7.3E-15 1.6E-19 74.1 9.2 73 8-83 1-81 (81)
67 cd04974 Ig3_FGFR Third immunog 99.6 5.6E-15 1.2E-19 75.9 8.1 76 8-83 1-89 (90)
68 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.6E-14 3.5E-19 70.9 8.9 62 11-76 1-63 (72)
69 KOG3513|consensus 99.6 2.7E-14 5.8E-19 97.7 12.2 106 3-111 436-543 (1051)
70 cd05733 Ig6_L1-CAM_like Sixth 99.6 1.3E-14 2.8E-19 72.5 7.8 64 11-76 1-70 (77)
71 cd05850 Ig1_Contactin-2 First 99.6 8.7E-14 1.9E-18 72.0 10.9 66 8-77 19-87 (94)
72 cd05874 Ig6_NrCAM Sixth immuno 99.6 2.3E-14 5E-19 71.5 8.4 65 11-77 1-71 (77)
73 cd05749 Ig2_Tyro3_like Second 99.6 3.3E-14 7.2E-19 71.5 8.9 68 2-77 7-75 (81)
74 cd05849 Ig1_Contactin-1 First 99.6 5E-14 1.1E-18 72.7 9.7 66 8-77 19-86 (93)
75 cd05875 Ig6_hNeurofascin_like 99.6 3.9E-14 8.5E-19 70.7 8.8 65 11-77 1-71 (77)
76 cd05734 Ig7_DSCAM Seventh immu 99.6 5.9E-14 1.3E-18 70.5 8.7 68 11-81 1-77 (79)
77 cd05729 Ig2_FGFR_like Second i 99.6 3.5E-13 7.6E-18 68.4 11.6 80 3-82 4-84 (85)
78 cd05882 Ig1_Necl-1 First (N-te 99.6 4E-13 8.7E-18 69.5 11.4 70 1-70 5-83 (95)
79 cd05895 Ig_Pro_neuregulin-1 Im 99.6 1.1E-13 2.4E-18 69.0 9.0 70 11-80 1-75 (76)
80 cd05742 Ig1_VEGFR_like First i 99.6 9.2E-14 2E-18 70.5 8.6 76 8-83 1-83 (84)
81 KOG4194|consensus 99.6 4.5E-14 9.7E-19 92.0 9.1 110 2-113 621-735 (873)
82 cd07701 Ig1_Necl-3 First (N-te 99.5 3.3E-13 7.1E-18 70.0 10.1 71 1-71 5-84 (95)
83 cd05873 Ig_Sema4D_like Immunog 99.5 3.1E-13 6.6E-18 68.6 9.6 66 2-72 5-71 (87)
84 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 3.7E-13 8E-18 68.3 9.8 76 8-83 1-82 (84)
85 cd04967 Ig1_Contactin First Ig 99.5 5.1E-13 1.1E-17 68.8 9.8 66 7-76 18-86 (91)
86 cd04979 Ig_Semaphorin_C Immuno 99.5 4.7E-13 1E-17 68.7 9.0 78 2-84 5-87 (89)
87 cd05898 Ig5_KIRREL3 Fifth immu 99.5 1.6E-12 3.4E-17 67.4 10.5 80 2-81 10-97 (98)
88 KOG4221|consensus 99.5 1.3E-12 2.9E-17 90.2 11.6 110 2-116 246-359 (1381)
89 cd05754 Ig3_Perlecan_like Thir 99.5 9.2E-13 2E-17 67.0 8.4 74 2-81 10-84 (85)
90 cd05757 Ig2_IL1R_like Second i 99.5 9.2E-13 2E-17 67.8 8.1 75 3-81 5-84 (92)
91 cd05752 Ig1_FcgammaR_like Frst 99.5 1E-12 2.2E-17 65.6 7.8 58 3-71 10-68 (78)
92 smart00409 IG Immunoglobulin. 99.4 2.7E-11 5.9E-16 61.0 12.3 82 2-83 3-85 (86)
93 smart00410 IG_like Immunoglobu 99.4 2.7E-11 5.9E-16 61.0 12.3 82 2-83 3-85 (86)
94 PHA02826 IL-1 receptor-like pr 99.4 1.2E-11 2.6E-16 73.5 12.1 104 2-109 31-154 (227)
95 cd05727 Ig2_Contactin-2-like S 99.4 8.2E-13 1.8E-17 68.0 5.8 69 2-73 12-84 (96)
96 cd05717 Ig1_Necl-1-3_like Firs 99.4 1.7E-11 3.6E-16 63.6 10.3 71 2-72 6-85 (95)
97 smart00408 IGc2 Immunoglobulin 99.4 8.7E-12 1.9E-16 59.4 8.6 62 7-72 1-62 (63)
98 cd05845 Ig2_L1-CAM_like Second 99.4 1.4E-12 3E-17 67.1 5.8 68 2-72 12-82 (95)
99 cd07690 Ig1_CD4 First immunogl 99.4 7.6E-12 1.6E-16 64.5 8.5 72 3-74 2-90 (94)
100 cd05871 Ig_Semaphorin_classIII 99.4 1.5E-11 3.2E-16 63.3 9.5 77 3-84 6-89 (91)
101 cd05872 Ig_Sema4B_like Immunog 99.4 9.4E-12 2E-16 62.8 8.4 64 2-70 5-68 (85)
102 PHA02785 IL-beta-binding prote 99.4 5.3E-11 1.2E-15 74.4 12.6 115 4-123 132-259 (326)
103 cd05881 Ig1_Necl-2 First (N-te 99.4 1.3E-10 2.9E-15 59.9 11.5 71 1-71 5-84 (95)
104 cd05860 Ig4_SCFR Fourth immuno 99.3 8.9E-11 1.9E-15 60.7 10.4 81 3-83 13-99 (101)
105 cd05753 Ig2_FcgammaR_like Seco 99.3 1.7E-11 3.7E-16 62.0 7.2 63 4-74 10-73 (83)
106 PF00047 ig: Immunoglobulin do 99.3 1.3E-11 2.8E-16 59.4 6.4 61 8-68 1-64 (64)
107 PHA02826 IL-1 receptor-like pr 99.3 3.4E-11 7.3E-16 71.6 9.2 66 4-71 140-210 (227)
108 cd05862 Ig1_VEGFR First immuno 99.3 1.3E-10 2.9E-15 59.1 8.8 76 8-83 1-84 (86)
109 PF13895 Ig_2: Immunoglobulin 99.3 1.2E-10 2.6E-15 58.3 8.2 70 3-82 9-79 (80)
110 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 1.7E-10 3.6E-15 59.9 8.3 79 2-82 9-103 (104)
111 PHA02785 IL-beta-binding prote 99.2 8.8E-10 1.9E-14 69.1 11.3 100 3-107 36-144 (326)
112 cd05897 Ig2_IL1R2_like Second 99.2 3.6E-10 7.8E-15 58.3 7.4 71 3-75 5-81 (95)
113 cd04983 IgV_TCR_alpha_like Imm 99.1 1.9E-09 4.1E-14 57.2 9.1 71 2-72 7-93 (109)
114 cd05900 Ig_Aggrecan Immunoglob 99.1 2.9E-09 6.3E-14 56.7 9.4 77 7-83 1-108 (112)
115 KOG4221|consensus 99.1 6.1E-09 1.3E-13 73.0 12.1 109 2-113 149-266 (1381)
116 cd05774 Ig_CEACAM_D1 First imm 99.1 4.5E-09 9.7E-14 55.3 9.1 77 3-82 8-104 (105)
117 cd00099 IgV Immunoglobulin var 99.1 2.4E-09 5.2E-14 56.4 7.8 70 4-73 2-91 (105)
118 cd05759 Ig2_KIRREL3-like Secon 99.1 7.7E-09 1.7E-13 52.1 9.3 63 10-72 1-69 (82)
119 cd05713 Ig_MOG_like Immunoglob 99.1 1E-08 2.2E-13 53.6 10.0 76 8-83 1-99 (100)
120 cd05714 Ig_CSPGs_LP Immunoglob 99.0 1.7E-08 3.8E-13 53.3 10.3 77 7-83 1-102 (106)
121 KOG4222|consensus 99.0 2E-09 4.4E-14 74.8 8.0 106 3-112 141-253 (1281)
122 cd05885 Ig2_Necl-4 Second immu 99.0 1.1E-08 2.3E-13 51.1 8.7 63 11-74 2-68 (80)
123 cd05877 Ig_LP_like Immunoglobu 99.0 1.6E-08 3.4E-13 53.5 9.4 77 7-83 1-102 (106)
124 cd05878 Ig_Aggrecan_like Immun 99.0 2.9E-08 6.2E-13 52.8 9.7 77 7-83 1-106 (110)
125 cd05741 Ig_CEACAM_D1_like Firs 99.0 1.3E-08 2.7E-13 52.4 8.1 63 8-73 1-81 (92)
126 cd05771 IgC_Tapasin_R Tapasin- 99.0 1.6E-08 3.6E-13 56.0 9.1 74 50-124 2-77 (139)
127 cd05899 IgV_TCR_beta Immunoglo 99.0 1.7E-08 3.6E-13 53.7 8.6 69 2-71 7-94 (110)
128 cd05879 Ig_P0 Immunoglobulin ( 99.0 4.9E-08 1.1E-12 52.3 10.0 72 2-73 7-104 (116)
129 cd05718 Ig1_PVR_like First imm 98.9 3.2E-08 7E-13 51.5 9.1 75 9-83 1-97 (98)
130 cd04980 IgV_L_kappa Immunoglob 98.9 1.4E-08 3.1E-13 53.7 7.8 68 3-70 10-92 (106)
131 cd04982 IgV_TCR_gamma Immunogl 98.9 1.6E-08 3.5E-13 54.3 8.1 68 3-70 8-98 (116)
132 cd05751 Ig1_LILRB1_like First 98.9 5.7E-09 1.2E-13 53.7 5.5 65 3-71 11-75 (91)
133 PHA03376 BARF1; Provisional 98.9 1.7E-07 3.8E-12 53.5 11.8 70 3-72 21-110 (221)
134 cd05775 Ig_SLAM-CD84_like_N N- 98.9 2.8E-08 6.1E-13 51.7 7.8 78 6-83 2-96 (97)
135 cd04984 IgV_L_lambda Immunoglo 98.9 3.3E-08 7.1E-13 51.5 7.8 67 4-70 2-84 (98)
136 KOG4222|consensus 98.9 9E-09 2E-13 71.7 6.8 111 2-115 234-346 (1281)
137 cd05901 Ig_Versican Immunoglob 98.8 4E-07 8.7E-12 48.7 10.7 76 8-83 2-113 (117)
138 PF13927 Ig_3: Immunoglobulin 98.8 1.1E-08 2.4E-13 50.3 4.3 57 11-70 18-75 (75)
139 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.4E-07 3.1E-12 50.6 8.3 72 2-73 7-103 (115)
140 PHA02987 Ig domain OX-2-like p 98.8 2.7E-07 5.8E-12 52.7 9.5 83 2-84 24-122 (189)
141 cd05902 Ig_Neurocan Immunoglob 98.8 3.4E-07 7.5E-12 48.6 9.3 77 7-83 1-106 (110)
142 cd05715 Ig_P0-like Immunoglobu 98.7 4.7E-07 1E-11 48.6 9.6 71 2-72 7-103 (116)
143 cd05888 Ig1_Nectin-4_like Frst 98.7 5.1E-07 1.1E-11 47.2 9.4 74 10-83 2-99 (100)
144 cd05886 Ig1_Nectin-1_like Firs 98.7 8.7E-07 1.9E-11 46.2 10.0 74 10-83 2-98 (99)
145 cd07694 Ig2_CD4 Second immunog 98.7 5.2E-07 1.1E-11 45.4 8.6 75 3-83 9-85 (88)
146 KOG4194|consensus 98.7 5E-08 1.1E-12 64.7 6.2 82 2-85 715-797 (873)
147 PF07686 V-set: Immunoglobulin 98.7 4.4E-07 9.5E-12 48.2 9.0 70 2-71 10-101 (114)
148 cd05711 Ig_FcalphaRI Immunoglo 98.7 1.5E-07 3.3E-12 48.6 6.4 67 3-70 10-76 (94)
149 cd00098 IgC Immunoglobulin Con 98.7 2.8E-07 6E-12 47.6 6.9 66 7-72 12-85 (95)
150 cd07706 IgV_TCR_delta Immunogl 98.6 6.5E-07 1.4E-11 48.1 8.1 69 2-70 8-93 (116)
151 cd05846 Ig1_MRC-OX-2_like Firs 98.6 6.9E-07 1.5E-11 46.5 7.9 76 8-83 1-96 (97)
152 cd05887 Ig1_Nectin-3_like Firs 98.6 1.9E-06 4.1E-11 44.7 9.3 75 9-83 1-95 (96)
153 cd05716 Ig_pIgR Immunoglobulin 98.6 5.7E-07 1.2E-11 46.8 7.4 69 3-71 2-86 (98)
154 cd07700 IgV_CD8_beta Immunoglo 98.6 5.5E-07 1.2E-11 47.7 7.3 68 3-70 1-93 (107)
155 cd05712 Ig_Siglec_N Immunoglob 98.6 1E-06 2.2E-11 47.6 7.9 70 2-71 8-102 (119)
156 cd05720 Ig_CD8_alpha Immunoglo 98.6 9.9E-07 2.2E-11 46.5 7.3 67 4-70 2-90 (104)
157 cd07705 Ig2_Necl-1 Second immu 98.5 2.5E-06 5.4E-11 43.1 8.3 61 11-72 2-69 (83)
158 cd05761 Ig2_Necl-1-4_like Seco 98.5 2E-06 4.3E-11 43.3 7.4 63 11-73 2-69 (82)
159 cd00096 Ig Immunoglobulin doma 98.5 2.8E-06 6.1E-11 40.6 7.5 62 11-72 1-66 (74)
160 cd05884 Ig2_Necl-3 Second immu 98.5 5.8E-06 1.3E-10 41.7 8.2 62 11-72 2-69 (83)
161 cd05755 Ig2_ICAM-1_like Second 98.4 3.3E-06 7.2E-11 44.0 7.4 68 4-73 12-86 (100)
162 cd05883 Ig2_Necl-2 Second immu 98.4 8.9E-06 1.9E-10 40.8 7.5 62 11-72 2-67 (82)
163 smart00406 IGv Immunoglobulin 98.4 5.5E-06 1.2E-10 41.3 6.8 59 10-68 1-81 (81)
164 cd05889 Ig1_DNAM-1_like First 98.3 3.8E-05 8.1E-10 39.9 9.8 73 9-81 1-93 (96)
165 cd05766 IgC_MHC_II_beta Class 98.3 6.2E-05 1.4E-09 38.9 9.5 67 6-72 12-83 (94)
166 cd07698 IgC_MHC_I_alpha3 Class 98.3 2.9E-05 6.3E-10 40.0 8.3 65 8-72 14-83 (93)
167 cd04981 IgV_H Immunoglobulin ( 98.2 2E-05 4.4E-10 42.4 7.7 68 3-70 7-97 (117)
168 cd05772 IgC_SIRP Signal-regula 98.2 8.6E-05 1.9E-09 39.6 9.9 65 6-72 19-92 (111)
169 PF08205 C2-set_2: CD80-like C 98.1 8.6E-05 1.9E-09 37.8 8.3 66 8-73 14-85 (89)
170 cd05770 IgC_beta2m Class I maj 98.1 0.00018 3.9E-09 37.1 9.6 64 7-71 14-82 (93)
171 smart00407 IGc1 Immunoglobulin 98.1 0.00012 2.7E-09 36.1 8.1 61 11-71 2-70 (75)
172 cd05767 IgC_MHC_II_alpha Class 98.0 0.00023 5.1E-09 36.8 8.4 61 8-71 15-83 (94)
173 cd05771 IgC_Tapasin_R Tapasin- 98.0 0.00028 6E-09 39.1 9.3 66 7-72 52-131 (139)
174 KOG3515|consensus 98.0 4.6E-05 9.9E-10 52.4 7.1 100 4-108 18-121 (741)
175 PF07654 C1-set: Immunoglobuli 97.9 0.00031 6.7E-09 35.4 7.7 64 6-72 6-77 (83)
176 cd07696 IgC_CH3 CH3 domain (th 97.8 0.00082 1.8E-08 34.9 8.5 27 6-32 12-41 (96)
177 cd07699 IgC_L Immunoglobulin C 97.8 0.00032 7E-09 36.7 6.5 66 7-72 16-89 (100)
178 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.0011 2.5E-08 34.2 7.8 65 8-72 14-86 (94)
179 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.0011 2.4E-08 34.8 7.6 29 7-35 15-45 (102)
180 cd07697 IgC_TCR_gamma T cell r 97.6 0.0012 2.6E-08 34.3 7.3 28 8-35 16-45 (96)
181 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00041 8.9E-09 33.1 4.5 53 5-71 4-56 (65)
182 cd05769 IgC_TCR_beta T cell re 97.5 0.0043 9.2E-08 33.4 8.4 72 7-78 17-98 (115)
183 PF08204 V-set_CD47: CD47 immu 97.5 0.00081 1.7E-08 36.7 5.5 78 5-83 24-119 (130)
184 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0021 4.6E-08 33.3 6.9 70 9-79 16-89 (95)
185 PHA02633 hypothetical protein; 97.4 0.0011 2.5E-08 31.1 5.1 35 50-84 19-53 (63)
186 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.0016 3.5E-08 31.4 5.7 49 8-70 6-54 (69)
187 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.003 6.5E-08 32.7 6.8 26 8-33 16-43 (95)
188 PF07354 Sp38: Zona-pellucida- 97.3 0.00056 1.2E-08 41.5 4.5 48 20-70 10-58 (271)
189 cd05719 Ig2_PVR_like Second im 97.3 0.007 1.5E-07 31.4 8.5 64 9-73 16-83 (95)
190 PHA02982 hypothetical protein; 97.1 0.0038 8.2E-08 36.8 6.0 70 3-72 34-123 (251)
191 cd04986 IgC_CH2 CH2 domain (se 96.9 0.0077 1.7E-07 31.5 5.6 27 7-33 18-47 (99)
192 cd07689 Ig2_VCAM-1 Second immu 96.9 0.017 3.7E-07 30.1 6.7 66 4-71 11-85 (99)
193 PHA03042 CD47-like protein; Pr 96.8 0.026 5.6E-07 34.7 8.1 70 6-82 29-103 (286)
194 KOG4597|consensus 96.7 0.0042 9.1E-08 40.9 4.2 81 4-84 207-292 (560)
195 cd07704 Ig2_Nectin-3-4_like Se 96.6 0.032 7E-07 29.1 6.7 69 3-72 11-84 (97)
196 KOG1480|consensus 96.6 0.00047 1E-08 47.6 -0.3 69 4-75 140-209 (909)
197 PHA03269 envelope glycoprotein 96.4 0.08 1.7E-06 35.4 8.8 77 48-124 288-367 (566)
198 cd05721 IgV_CTLA-4 Immunoglobu 96.4 0.054 1.2E-06 29.1 7.8 66 3-68 8-93 (115)
199 PF11465 Receptor_2B4: Natural 95.9 0.097 2.1E-06 27.7 6.2 36 48-83 70-106 (108)
200 KOG3515|consensus 95.7 0.041 8.9E-07 38.7 5.5 93 19-111 427-522 (741)
201 PHA03270 envelope glycoprotein 95.3 0.52 1.1E-05 31.3 9.1 75 50-124 183-259 (466)
202 PF06328 Lep_receptor_Ig: Ig-l 95.1 0.2 4.3E-06 25.7 6.5 65 3-69 13-82 (89)
203 PHA02914 Immunoglobulin-like d 95.1 0.57 1.2E-05 30.9 8.7 37 49-85 81-118 (500)
204 PHA03273 envelope glycoprotein 95.0 0.5 1.1E-05 31.6 8.2 76 49-124 198-275 (486)
205 PHA02865 MHC-like TNF binding 94.2 0.38 8.2E-06 31.0 6.2 21 10-30 216-238 (338)
206 PHA03271 envelope glycoprotein 93.9 1.2 2.6E-05 29.6 8.4 77 48-124 206-285 (490)
207 PHA03052 Hypothetical protein; 93.2 0.41 8.8E-06 23.1 4.0 33 2-34 6-41 (69)
208 cd05898 Ig5_KIRREL3 Fifth immu 91.9 0.65 1.4E-05 24.3 4.2 30 94-123 11-40 (98)
209 PF00041 fn3: Fibronectin type 91.8 0.85 1.9E-05 22.3 4.9 29 97-125 11-41 (85)
210 PF05790 C2-set: Immunoglobuli 89.3 1.7 3.8E-05 21.8 8.0 23 50-72 44-67 (80)
211 PHA02914 Immunoglobulin-like d 86.8 2.4 5.2E-05 28.2 4.7 69 3-71 274-368 (500)
212 cd07689 Ig2_VCAM-1 Second immu 85.1 3.6 7.9E-05 21.6 4.1 34 88-121 4-37 (99)
213 PHA03112 IL-18 binding protein 80.7 8.1 0.00018 21.8 6.7 28 4-31 34-63 (141)
214 PHA03269 envelope glycoprotein 80.5 16 0.00036 25.2 7.0 32 4-35 338-372 (566)
215 PHA03240 envelope glycoprotein 79.3 4.8 0.0001 24.4 3.6 64 2-65 32-121 (258)
216 PHA03273 envelope glycoprotein 76.0 23 0.00049 24.4 7.0 66 4-69 246-322 (486)
217 PHA03282 envelope glycoprotein 74.6 11 0.00024 25.8 4.6 35 49-83 124-160 (540)
218 cd05890 Ig2_Nectin-1_like Seco 73.4 11 0.00025 19.7 6.2 20 10-29 22-42 (98)
219 PF06832 BiPBP_C: Penicillin-B 72.1 11 0.00024 19.0 7.2 55 10-76 31-85 (89)
220 PHA03270 envelope glycoprotein 69.8 33 0.0007 23.5 7.1 32 4-35 230-264 (466)
221 KOG0613|consensus 63.0 2.7 5.9E-05 31.9 0.2 51 18-68 214-264 (1205)
222 KOG0196|consensus 62.7 65 0.0014 24.4 7.8 36 89-124 446-483 (996)
223 PF01688 Herpes_gI: Alphaherpe 56.6 38 0.00082 19.7 4.3 23 49-71 124-146 (161)
224 PHA03283 envelope glycoprotein 56.3 69 0.0015 22.6 5.7 36 49-84 134-169 (542)
225 PF02440 Adeno_E3_CR1: Adenovi 56.1 23 0.00049 17.0 4.0 21 5-29 2-22 (63)
226 PHA03189 UL14 tegument protein 52.3 64 0.0014 21.1 8.5 22 50-72 135-156 (348)
227 PF01108 Tissue_fac: Tissue fa 41.5 55 0.0012 17.2 4.7 24 99-122 34-58 (107)
228 PHA03292 envelope glycoprotein 39.7 97 0.0021 21.0 4.3 23 49-71 128-150 (413)
229 PHA03291 envelope glycoprotein 39.1 1.2E+02 0.0026 20.4 4.7 27 49-75 129-155 (401)
230 PHA03289 envelope glycoprotein 38.6 1.1E+02 0.0025 20.1 4.4 23 49-71 122-144 (352)
231 KOG1026|consensus 37.1 83 0.0018 23.5 4.0 29 5-33 204-232 (774)
232 PHA03290 envelope glycoprotein 35.9 1.3E+02 0.0029 20.0 4.5 23 49-71 129-151 (357)
233 PF13220 DUF4028: Protein of u 34.9 39 0.00084 15.5 1.5 18 57-74 6-23 (65)
234 KOG3611|consensus 33.5 98 0.0021 23.1 4.0 57 11-71 572-634 (737)
235 KOG0613|consensus 30.1 50 0.0011 25.9 2.2 75 3-77 344-421 (1205)
236 PHA03286 envelope glycoprotein 30.1 1.8E+02 0.004 20.3 4.5 35 49-83 127-162 (492)
237 COG5475 Uncharacterized small 27.8 78 0.0017 14.8 4.5 17 61-77 28-44 (60)
238 cd00063 FN3 Fibronectin type 3 27.7 78 0.0017 14.8 3.4 25 99-123 14-40 (93)
239 KOG4367|consensus 25.7 1.6E+02 0.0035 20.5 3.7 39 85-123 438-478 (699)
240 PF12988 DUF3872: Domain of un 20.6 1.8E+02 0.004 16.5 3.7 29 98-126 46-76 (137)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.85 E-value=7.7e-20 Score=95.31 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=74.4
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+..|+.+.|.|.+.|.|.+++.|+|++..+....++........+.|.|.++.+.|.|.|+|.+.|..|...+.+.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l 88 (98)
T cd05762 9 DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL 88 (98)
T ss_pred CEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence 46788999999999999999999999999999877777766655556789999999999999999999999999999888
Q ss_pred EecC
Q psy12132 82 SGIP 85 (126)
Q Consensus 82 ~~~~ 85 (126)
.|..
T Consensus 89 ~V~~ 92 (98)
T cd05762 89 TVVD 92 (98)
T ss_pred EEec
Confidence 8753
No 2
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.83 E-value=8.1e-19 Score=89.42 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=70.1
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++..........|.|.++.+.|+|.|+|.+.|..|...+.+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467889999999999999999999999999888653 4565555445578999999999999999999999999988887
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 764
No 3
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.82 E-value=1e-18 Score=90.26 Aligned_cols=81 Identities=20% Similarity=0.429 Sum_probs=69.1
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|+|.|+|.+.|..|.....+.+
T Consensus 11 v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 5678999999999999999999999999988876666655433 334689999999999999999999999988888776
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.|
T Consensus 91 ~v 92 (92)
T cd05737 91 SV 92 (92)
T ss_pred eC
Confidence 53
No 4
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.82 E-value=3.8e-19 Score=88.34 Aligned_cols=74 Identities=24% Similarity=0.475 Sum_probs=63.1
Q ss_pred CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+|+++.|.|.+.|.|.|.+.|++++..+....+......+ .|.|.++...|.|.|+|.+.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999887655554443333 8999999999999999999999999888877753
No 5
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.82 E-value=5e-19 Score=87.47 Aligned_cols=73 Identities=30% Similarity=0.399 Sum_probs=63.8
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|+++.|.|.+.|.|.|.+.|+|++..+....++.+..++ .|.|.+++..|.|.|+|.+.|..|.......|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 678999999999999999999999877666777665554 7999999999999999999999999888877753
No 6
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.81 E-value=4e-18 Score=88.05 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=69.4
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+..|+++.|.|.+.+.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus 12 ~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 12 SLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred cEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 46788999999999999999999999999988776666666554445689999999999999999999999988887765
No 7
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.80 E-value=4.1e-18 Score=89.03 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=67.1
Q ss_pred ceeccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEecC-----CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132 2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS 75 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 75 (126)
.+.+.+|+++.|.|.+.| .|.|.+.|+|+|..+............ ....|.|.++...|.|.|+|.+.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 467788999999999999 899999999999988754433222211 13589999999999999999999999998
Q ss_pred EEEEEEEe
Q psy12132 76 QQFIQLSG 83 (126)
Q Consensus 76 ~~~~~l~~ 83 (126)
...+.|.|
T Consensus 92 ~~t~~L~V 99 (101)
T cd04975 92 SLTFELYV 99 (101)
T ss_pred EEEEEEEE
Confidence 88888775
No 8
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.80 E-value=9.1e-18 Score=83.39 Aligned_cols=74 Identities=22% Similarity=0.483 Sum_probs=63.9
Q ss_pred cEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 10 ~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|...+.+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999886666666655555678999999999999999999999999888887753
No 9
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.80 E-value=8.6e-18 Score=86.48 Aligned_cols=82 Identities=26% Similarity=0.541 Sum_probs=74.3
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+.+|+++.|.|.+.+.|.+.+.|++++..+....++..........|.|.++...|.|.|+|.+.+..|...+.+.|
T Consensus 9 ~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 9 DVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp EEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 56788999999999999999999999999999988888888777778899999999999999999999999988888877
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.|
T Consensus 89 ~V 90 (90)
T PF07679_consen 89 TV 90 (90)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 10
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.79 E-value=7.8e-18 Score=82.93 Aligned_cols=71 Identities=25% Similarity=0.427 Sum_probs=60.4
Q ss_pred cEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 10 ~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
++.|.|.+.|.|.|.+.|++++..+....++.....+ .+.|.++...|.|.|+|.+.|..|...+...|.+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999887666666655444 5888899999999999999999999988887753
No 11
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.79 E-value=2.1e-17 Score=85.00 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=66.1
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|.|.+.|..|...+.+.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 34578899999999999999999999999987754433322222334589999999999999999999999998888776
Q ss_pred E
Q psy12132 82 S 82 (126)
Q Consensus 82 ~ 82 (126)
.
T Consensus 89 ~ 89 (90)
T cd04972 89 T 89 (90)
T ss_pred e
Confidence 5
No 12
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.79 E-value=6.7e-18 Score=83.63 Aligned_cols=73 Identities=26% Similarity=0.379 Sum_probs=63.3
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|+++.|.|.+.+.|.|.+.|++++..+....++.....+ .|.|.++...|.|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999887766666655444 7999999999999999999999999888887753
No 13
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.79 E-value=8.7e-18 Score=83.33 Aligned_cols=73 Identities=25% Similarity=0.486 Sum_probs=60.7
Q ss_pred EEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|+|++..+.. ..++.+.... +..+|.|.++...|.|.|+|.+.|..|...+...|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47899999999999999999988764 3566654432 3358999999999999999999999999988877753
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.78 E-value=5.6e-18 Score=86.74 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=64.7
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.. . ...|.|.++...|.|.|+|.+.|..|...+...|
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--S--GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--C--CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 46678999999999999999999999998876654433322 1 2379999999999999999999999998888877
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.|
T Consensus 86 ~V 87 (88)
T cd05851 86 YV 87 (88)
T ss_pred EE
Confidence 65
No 15
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.77 E-value=3e-17 Score=83.55 Aligned_cols=78 Identities=21% Similarity=0.401 Sum_probs=66.2
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+..|+++.|.|.+.|.|.|.+.|++++..+....++... ++ .|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~-~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE-AG---DLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe-CC---EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 456788999999999999999999999999888665555432 22 79999999999999999999999988888777
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.+
T Consensus 84 ~V 85 (85)
T cd05728 84 AV 85 (85)
T ss_pred EC
Confidence 53
No 16
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.76 E-value=6.6e-17 Score=83.41 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=68.0
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
.+.+.+|+++.|.|.+.+.|.|.+.|++++..+....++.... .+....|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 4678899999999999999999999999998876655554432 222357999999999999999999999999988887
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
+.+
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 763
No 17
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.76 E-value=4.2e-17 Score=80.93 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=59.9
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|+|++..+... .++.+.... +...|.|.++...|.|.|+|.+.|..|...+...|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 478999999999999999999887643 455554433 3347999999999999999999999999988877753
No 18
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.76 E-value=3.9e-17 Score=85.45 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=65.6
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec------CCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS------SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 76 (126)
..+..|+.+.|.|.+.|.|.|++.|+|++.++....+...... .....|.|.++...|.|.|+|.+.|..|...
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS 92 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence 4567789999999999999999999999998875543222111 1124899999999999999999999999998
Q ss_pred EEEEEEe
Q psy12132 77 QFIQLSG 83 (126)
Q Consensus 77 ~~~~l~~ 83 (126)
.++.|.+
T Consensus 93 ~t~~l~V 99 (101)
T cd05859 93 YTFALQI 99 (101)
T ss_pred EEEEEEE
Confidence 8887775
No 19
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.76 E-value=8.6e-17 Score=82.31 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=64.3
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEe--cC--CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHV--SS--EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~--~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
|+.+.|.|.+.|.|++.+.|++++..+... .++.+.. .+ ....|.|.++...|.|.|+|.+.|..|...+.+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 788999999999999999999999877543 3554432 11 235799999999999999999999999999999888
Q ss_pred ecC
Q psy12132 83 GIP 85 (126)
Q Consensus 83 ~~~ 85 (126)
+..
T Consensus 81 V~~ 83 (88)
T cd05735 81 VQE 83 (88)
T ss_pred EeC
Confidence 754
No 20
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.76 E-value=6e-17 Score=84.15 Aligned_cols=80 Identities=19% Similarity=0.400 Sum_probs=66.6
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+.+..|+++.|.|.+.|.|.|.+.|++++..+... .++..... ...|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNED--GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCC--CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 45778999999999999999999999999887654 34433322 2479999999999999999999999998888888
Q ss_pred Eec
Q psy12132 82 SGI 84 (126)
Q Consensus 82 ~~~ 84 (126)
.+.
T Consensus 91 ~V~ 93 (95)
T cd05730 91 KVF 93 (95)
T ss_pred EEE
Confidence 764
No 21
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.76 E-value=4.9e-17 Score=81.51 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=60.6
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 79 (126)
|+++.|.|.+.|.|.|.+.|++++..+....++..........|.|.++...|.|.|+|.+.|..|......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 678999999999999999999998777665666655555556899999999999999999999988775543
No 22
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.76 E-value=7.1e-17 Score=80.26 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=59.9
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|+|++..+... .++.+.... ....|.|.+++..|.|.|+|.+.|..|...+...|.+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 468999999999999999999887643 455554432 3347999999999999999999999999888877653
No 23
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.76 E-value=1.3e-16 Score=82.07 Aligned_cols=80 Identities=19% Similarity=0.395 Sum_probs=65.7
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFI 79 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~ 79 (126)
++.+..|+++.|.|.+.|.|. .+.|++ ++..+....++.....+....|.|.++...|.|.|+|.+.|..|.. .+.+
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 567889999999999999987 899998 5666666667776666656789999999999999999999998875 4555
Q ss_pred EEE
Q psy12132 80 QLS 82 (126)
Q Consensus 80 ~l~ 82 (126)
.|.
T Consensus 88 ~l~ 90 (92)
T cd05866 88 VLE 90 (92)
T ss_pred EEE
Confidence 554
No 24
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.75 E-value=2.2e-17 Score=80.87 Aligned_cols=68 Identities=26% Similarity=0.573 Sum_probs=58.2
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+.|.|.+.|.|.|.+.|++++..+....++.+...+ .|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 478999999999999999999887766666554443 89999999999999999999999988877765
No 25
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.75 E-value=1.2e-16 Score=79.65 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=59.8
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|+++.|.|.+.|.|.|.+.|++++..+.... ++. ... ..|.|.+++..|.|.|+|.+.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSS---GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeC---CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999999999999998775432 222 222 37999999999999999999999999888877765
No 26
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.75 E-value=1.4e-16 Score=81.14 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=64.9
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+.+..|+.+.|.|.+.|.|.|.+.|++++..+....+.. .........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 457789999999999999999999999998876543321 1111223478999999999999999999999999888877
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 53
No 27
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.75 E-value=1.2e-16 Score=83.38 Aligned_cols=81 Identities=26% Similarity=0.520 Sum_probs=63.9
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEEC--CEEecc-----CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTAITL-----GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 74 (126)
++.+.+|+++.|.|.+.|.|.|.+.|++. +..+.. ..++..........|.|.++...|.|.|+|.+.|..|.
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 56788999999999999999999999994 433321 23454443334468999999999999999999999998
Q ss_pred eEEEEEEE
Q psy12132 75 SQQFIQLS 82 (126)
Q Consensus 75 ~~~~~~l~ 82 (126)
....+.|.
T Consensus 90 ~~~~~~l~ 97 (98)
T cd05870 90 HQKSMYLD 97 (98)
T ss_pred ceeEEEEe
Confidence 88777664
No 28
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.74 E-value=1.4e-16 Score=82.57 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=63.7
Q ss_pred eeccCCccEEEEEEeeecCC-CeeEEEE-CCEEecc-CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCC-ceeEE
Q psy12132 3 SITAPDMRAEIICNVYANPP-AKVEWFR-DGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNL-GSSQQ 77 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~ 77 (126)
..+..|+++.|.|.+.|.|. |.+.|++ ++..+.. ..++..... .....|.|.+++..|.|.|+|.+.|.. |...+
T Consensus 10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 45778999999999999985 7999998 6765544 335444322 224689999999999999999999986 88888
Q ss_pred EEEEEe
Q psy12132 78 FIQLSG 83 (126)
Q Consensus 78 ~~~l~~ 83 (126)
.+.|.+
T Consensus 90 s~~l~v 95 (96)
T cd05865 90 TVNVKI 95 (96)
T ss_pred EEEEEE
Confidence 887764
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=1.4e-16 Score=81.63 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=63.3
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
++.+.+|+++.|.|.+.|.|.|.+.|++++..+....... .. ...|.|.+++..|+|.|.|.+.|..|...+...|
T Consensus 10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MS---GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-Ee---CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 4567889999999999999999999999876554333322 22 2389999999999999999999999988887777
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.+
T Consensus 86 ~V 87 (88)
T cd04968 86 YV 87 (88)
T ss_pred EE
Confidence 64
No 30
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.74 E-value=1.6e-16 Score=82.66 Aligned_cols=81 Identities=27% Similarity=0.484 Sum_probs=64.7
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 76 (126)
+..+.+|+++.|.|.+.+.|.|.+.|++++..+... .++..........|.|.+++..|.|.|+|.+.|..|...
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 456788999999999999999999999987555422 233333333446899999999999999999999999888
Q ss_pred EEEEEE
Q psy12132 77 QFIQLS 82 (126)
Q Consensus 77 ~~~~l~ 82 (126)
..+.|.
T Consensus 90 ~s~~l~ 95 (96)
T cd05732 90 QSMYLE 95 (96)
T ss_pred EEEEEe
Confidence 877765
No 31
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.74 E-value=1.7e-16 Score=79.11 Aligned_cols=74 Identities=19% Similarity=0.430 Sum_probs=59.6
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCc-EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGR-IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|+++.|.|.+.|.|.|.+.|++++..+..... .....++ ..|.+.+++..|.|.|+|.+.|..|...+.+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67899999999999999999999988753221 1111222 27889999999999999999999999998888765
No 32
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.74 E-value=9.7e-17 Score=80.06 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=60.4
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|+++.|.|.+.|.|.|.+.|++++..+....... ........|.|.+++..|.|.|+|.+.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6889999999999999999999998776443221 11112248999999999999999999999999888887765
No 33
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.73 E-value=1.1e-16 Score=78.83 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=56.1
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|++++..+.... .... .....|.|.+++..|.|.|+|.+.|..|...+.+.|.+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999999999999999887654332 2221 12348999999999999999999999999888887764
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.73 E-value=1e-16 Score=77.62 Aligned_cols=65 Identities=25% Similarity=0.463 Sum_probs=53.8
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|+|+|..+.... ....|.|.++...|.|.|+|.+.|..|...+.+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 4689999999999999999998875221 2237999999999999999999999997766666553
No 35
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.72 E-value=3.4e-16 Score=77.70 Aligned_cols=73 Identities=25% Similarity=0.431 Sum_probs=59.4
Q ss_pred CccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+......+ .|.|..+...|.|.|+|.+.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 56665544444444443 7999999999999999999999998888777653
No 36
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.72 E-value=5.4e-16 Score=80.82 Aligned_cols=78 Identities=26% Similarity=0.468 Sum_probs=61.9
Q ss_pred cCCccEEEEEEeeecCCCeeEEEECCEEeccC-----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
..|+.+.|.|.+.|.|.|.+.|++++..+... .++..........|.|.+++..|.|.|+|.+.|..|...+.+.
T Consensus 15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 94 (97)
T cd05869 15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMY 94 (97)
T ss_pred EcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEE
Confidence 34799999999999999999999987665422 2333333333468999999999999999999999999888877
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
|.|
T Consensus 95 l~v 97 (97)
T cd05869 95 LEV 97 (97)
T ss_pred EEC
Confidence 753
No 37
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.72 E-value=7.6e-16 Score=78.30 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=60.7
Q ss_pred ccEEEEEEeeecCCC--eeEEEECCEEeccC---CcEEE-EecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 9 MRAEIICNVYANPPA--KVEWFRDGTAITLG---GRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 9 ~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+++.|.|.+.|.|.| .+.|++++..+... .++.. ........|.|.+++..|.|.|+|.+.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999987 58999999877532 23322 2222235899999999999999999999999999998888
Q ss_pred ecC
Q psy12132 83 GIP 85 (126)
Q Consensus 83 ~~~ 85 (126)
|..
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 753
No 38
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.71 E-value=5e-16 Score=78.17 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=56.6
Q ss_pred EEEEeeecCCCeeEEEECCEEeccCCcEEEE--e-----cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMH--V-----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 13 l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~--~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+.|.+.|.|.|+++|+|++..+......... . ......|.|.++...|.|.|+|.+.|..|...+.+.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 6899999999999999999988765433221 1 12245799999999999999999999999998887765
No 39
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.71 E-value=5.6e-16 Score=75.75 Aligned_cols=68 Identities=22% Similarity=0.442 Sum_probs=54.0
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
|+++.|.|.+.|.|.|++.|++++..+....++.. ....|.|.++ .|.|.|+|.+.|..|...+...|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999987754443321 1236888887 47899999999999988777655
No 40
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.70 E-value=4.2e-16 Score=80.17 Aligned_cols=74 Identities=22% Similarity=0.424 Sum_probs=60.0
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEe--------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 79 (126)
|+++.|.|.+.+.|.|.+.|++++..+ ....++.....+ .|.|.+++..|.|.|+|.+.|..|...+.+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 678999999999999999999987532 123344443333 799999999999999999999999988888
Q ss_pred EEEec
Q psy12132 80 QLSGI 84 (126)
Q Consensus 80 ~l~~~ 84 (126)
.|.|.
T Consensus 78 ~l~V~ 82 (90)
T cd05726 78 YLEVT 82 (90)
T ss_pred EEEEe
Confidence 88764
No 41
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.70 E-value=6.7e-16 Score=77.02 Aligned_cols=74 Identities=22% Similarity=0.417 Sum_probs=58.8
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 84 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~ 84 (126)
+.|.|.+.|.|.|.+.|++++..+....+..+........|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 36899999999999999999988764432222222223479999999999999999999999999888888764
No 42
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.70 E-value=4e-16 Score=76.77 Aligned_cols=69 Identities=23% Similarity=0.515 Sum_probs=55.9
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|+|++..+....++. . ....|.|.++...|.|.|+|.+.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~-~---~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK-K---SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE-c---CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 3689999999999999999998886554332 1 1247999999999999999999999987766666553
No 43
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.70 E-value=5.8e-16 Score=78.28 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=62.9
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
.+....|+++.|.|.+.+.|.|.+.|++++..+....... .......|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 3556789999999999999999999999987664332221 11223589999999999999999999999988877776
Q ss_pred E
Q psy12132 82 S 82 (126)
Q Consensus 82 ~ 82 (126)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 5
No 44
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.69 E-value=9e-16 Score=77.05 Aligned_cols=76 Identities=17% Similarity=0.405 Sum_probs=62.2
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+..+.+|+.+.|.|.+.+. .+.+.|+|++..+....++.+. .. .|.|.+++..|+|.|+|.+.|..|.....+.+
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~---~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GE---EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CC---EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 4667899999999999875 5789999999888766565443 22 79999999999999999999988877766655
Q ss_pred E
Q psy12132 82 S 82 (126)
Q Consensus 82 ~ 82 (126)
.
T Consensus 78 ~ 78 (79)
T cd04973 78 N 78 (79)
T ss_pred e
Confidence 4
No 45
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.69 E-value=8.7e-16 Score=75.22 Aligned_cols=69 Identities=28% Similarity=0.516 Sum_probs=56.0
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|++++..+.. .++...... .|.|.++...|.|.|+|.+.|..|...+...|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47899999999999999998765533 344444333 7999999999999999999999998888777653
No 46
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.69 E-value=1.5e-15 Score=75.78 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=56.0
Q ss_pred EEEEeeecCCCeeEEEECCEEeccCCcEEE--Ee--c-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 13 IICNVYANPPAKVEWFRDGTAITLGGRIDM--HV--S-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 13 l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~--~~--~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+.|.+.|.|.|+++|+|++..+....+... .. . .....|.|..+...|.|.|+|.+.|..|+....+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 678999999999999999998875544321 11 1 1235799999999999999999999999888877664
No 47
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.69 E-value=1.7e-15 Score=77.93 Aligned_cols=78 Identities=17% Similarity=0.387 Sum_probs=61.4
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~ 80 (126)
++.+.+|+++.|.|.+.|. .|.+.|++++..+.. .++.+... ...|.|.++++.|.|.|.|.+.|..|... ..+.
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 4578899999999999999 999999999987654 33433322 24799999999999999999999988653 3555
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 543
No 48
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.69 E-value=3e-15 Score=79.46 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=63.2
Q ss_pred cCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEE--ecC--CeEEEEEecCC-CCCCEEEEEEEecCCceeEEEE
Q psy12132 6 APDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMH--VSS--EKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQFI 79 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~--~~~--~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~ 79 (126)
..|.++.|.|.+.|.|.+.+.|++++..+.. ..++... ..+ ....|.|.++. ..|.|.|+|.+.|..|.....+
T Consensus 21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 3567899999999999999999999988763 2344322 111 13579999987 5899999999999999999888
Q ss_pred EEEecC
Q psy12132 80 QLSGIP 85 (126)
Q Consensus 80 ~l~~~~ 85 (126)
.|.+..
T Consensus 101 ~L~~~~ 106 (109)
T cd05773 101 QLVSTS 106 (109)
T ss_pred EEEecC
Confidence 888753
No 49
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.69 E-value=7.4e-16 Score=75.39 Aligned_cols=67 Identities=24% Similarity=0.491 Sum_probs=53.3
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+.|.|.+.|.|.|.+.|+|++..+....++ .. ...|.|.++...|.|.|+|.+.|..|.......+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 368999999999999999999988654332 22 23799999999999999999999988665544443
No 50
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.68 E-value=2.2e-15 Score=76.86 Aligned_cols=72 Identities=26% Similarity=0.516 Sum_probs=59.2
Q ss_pred ceeccCCccEEEEEEe-eecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132 2 HSITAPDMRAEIICNV-YANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 76 (126)
++.+.+|+++.|.|.+ .+.|.|.+.|++++..+.. ..++..... ..|.|.++...|.|.|+|.+.|..|...
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDD---GNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccC---CEEEEeECCcccCEEEEEEEEeccCcee
Confidence 4677899999999998 7889999999999988765 334444333 3799999999999999999999888653
No 51
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=2.8e-15 Score=76.33 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=59.2
Q ss_pred ccEEEEEEeeecCCC--eeEEEECCEEeccCC---cEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 9 MRAEIICNVYANPPA--KVEWFRDGTAITLGG---RID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 9 ~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+++.|.|.+.+.|.| ++.|++++..+.... ++. .........|.|.+++..|.|.|+|.+.|..|...+...|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999887 679999998775321 221 11112234899999999999999999999999888888887
Q ss_pred ecC
Q psy12132 83 GIP 85 (126)
Q Consensus 83 ~~~ 85 (126)
|..
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 753
No 52
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.68 E-value=1.7e-15 Score=75.10 Aligned_cols=69 Identities=29% Similarity=0.583 Sum_probs=54.1
Q ss_pred EEEEEEeeecCCCeeEEEECCEEec--cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEEE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLS 82 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~ 82 (126)
+.|.|.+.|.|.|.+.|++++..+. ...++.....+ .|.|.++...|.|.|+|.+.|..|.. .....|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 4789999999999999999998775 33455443333 79999999999999999999998864 3444443
No 53
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.68 E-value=1.9e-15 Score=76.42 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=59.4
Q ss_pred ccEEEEEEeee--cCCCeeEEEECCEEecc---CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 9 MRAEIICNVYA--NPPAKVEWFRDGTAITL---GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 9 ~~~~l~C~~~~--~p~~~~~w~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+++.|.|.+.+ .+.+.+.|+++++.|.. ..++..... .....|.|.+++..|.|+|+|.+.+..+...+...|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46899999976 44778999999998863 234433211 1234799999999999999999999999998888888
Q ss_pred ec
Q psy12132 83 GI 84 (126)
Q Consensus 83 ~~ 84 (126)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 75
No 54
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.67 E-value=4.5e-15 Score=77.46 Aligned_cols=80 Identities=21% Similarity=0.496 Sum_probs=63.6
Q ss_pred ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccC--CcEEEEec----CCeEEEEEecCCCCC-CEEEEEEEecCCc
Q psy12132 2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNYMCQASNNLG 73 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~C~~~~~~~ 73 (126)
.+.+..|+++.|.|.+.|.|.| .+.|++++..+... .++.+... +..+.|.|.+++..| .|.|.|.+.|..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 3567889999999999999999 69999999877643 45555432 223589999999844 8999999999999
Q ss_pred eeEEEEEE
Q psy12132 74 SSQQFIQL 81 (126)
Q Consensus 74 ~~~~~~~l 81 (126)
...+.+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 88877665
No 55
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.67 E-value=1.5e-15 Score=75.51 Aligned_cols=71 Identities=24% Similarity=0.442 Sum_probs=54.9
Q ss_pred EEEEEEeeecCCCeeEEEECCEEe-c--cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAI-T--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~-~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|++++... . ...++..... ...|.|.+++..|.|.|+|.+.|..|...+...|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 468999999999999999987532 2 1223333222 237999999999999999999999998888877765
No 56
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.67 E-value=1.7e-15 Score=74.61 Aligned_cols=70 Identities=24% Similarity=0.501 Sum_probs=55.6
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|++++..+... +.... .....|.|.++...|.|.|+|.+.|..|...+.+.+.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999999999999999988765432 22221 12247999999999999999999999998888877765
No 57
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.66 E-value=5.1e-15 Score=73.96 Aligned_cols=71 Identities=31% Similarity=0.548 Sum_probs=54.6
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE--EEEEEEe
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLSG 83 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~--~~~~l~~ 83 (126)
+.|.|.+.|.|.|.+.|+|++..+.... ++..... ...|.|.++...|.|.|.|.+.|..|... +.+.|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4789999999999999999998875443 3333222 23799999999999999999999988763 3444443
No 58
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.65 E-value=7.9e-15 Score=76.15 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=57.9
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc--EEEEecCCeEEEEEecC-----CCCCCEEEEEEEecC-Cc
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHI-----KDTDFGNYMCQASNN-LG 73 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~~~-~~ 73 (126)
+..+..|+++.|.|.+.+.|.|.+.|+|++..+..... .....++ .+.+..+ .+.|.|.|+|.+.|. .|
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQNDSLG 84 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence 45667899999999999999999999999988764332 3333333 4555554 588999999999999 88
Q ss_pred ee-EEEEEEE
Q psy12132 74 SS-QQFIQLS 82 (126)
Q Consensus 74 ~~-~~~~~l~ 82 (126)
.. +..+.|.
T Consensus 85 ~~~s~~~~l~ 94 (95)
T cd05722 85 SIVSRTARLT 94 (95)
T ss_pred cEEEeeeEEe
Confidence 66 4444443
No 59
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.65 E-value=1.4e-15 Score=78.59 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=61.2
Q ss_pred ceeccCCccEEEEEEeee-----cCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132 2 HSITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 74 (126)
+..+.+|+.+.|.|.+.+ .|.+.+.|+|++..+... ....+... ...|.|.++...|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 456788999999999988 688899999988653221 11222221 237999999999999999999999988
Q ss_pred eEEEEEEEe
Q psy12132 75 SQQFIQLSG 83 (126)
Q Consensus 75 ~~~~~~l~~ 83 (126)
....+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 887776653
No 60
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.65 E-value=1e-14 Score=76.32 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=57.8
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-----CcEEEEecCCeEEEEEe--cCCCCCCEEEEEEEecCCce
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVR--HIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~~~~~d~g~y~C~~~~~~~~ 74 (126)
++.+.+|+++.|.|.+.|.|.|.+.|++++..+... .+......+....+.+. .+...|.|.|+|.+.|..|.
T Consensus 10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~ 89 (100)
T cd07693 10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89 (100)
T ss_pred eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence 456788999999999999999999999999887641 12222333322233332 33689999999999999987
Q ss_pred -eEEEEEEE
Q psy12132 75 -SQQFIQLS 82 (126)
Q Consensus 75 -~~~~~~l~ 82 (126)
....+.|.
T Consensus 90 ~~s~~~~l~ 98 (100)
T cd07693 90 AVSRNASLE 98 (100)
T ss_pred eecceEEEE
Confidence 44555544
No 61
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.65 E-value=9.4e-15 Score=75.65 Aligned_cols=67 Identities=25% Similarity=0.532 Sum_probs=53.1
Q ss_pred CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCC-CCCCEEEEEEEecCCceeE
Q psy12132 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~ 76 (126)
+|+++.|.|.+.|.|.|.+.|++++..+......... .++ .|.|.++. ..|.|.|+|.+.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g---~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG---NLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC---eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 4789999999999999999999999887643322222 223 68888874 6899999999999998764
No 62
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.65 E-value=3.6e-15 Score=74.16 Aligned_cols=70 Identities=21% Similarity=0.471 Sum_probs=55.0
Q ss_pred EEEEEEeee-cCCCeeEEEECCEEeccCCcEE---EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRID---MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
+.|.|.+.+ .|.|.+.|++++..+....+.. +........|.|.++...|.|.|+|.+.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 8999999999998876543322 223334568999999999999999999999988766543
No 63
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.65 E-value=2.1e-14 Score=74.08 Aligned_cols=80 Identities=20% Similarity=0.428 Sum_probs=60.2
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCc-eeEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLG-SSQQF 78 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~ 78 (126)
+..+..|+++.|.|.+.|.| +.+.|++ ++..+....++..... .....|.|.++...|.|.|+|.+.|..| ...++
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 45678899999999999986 4999998 5655554444443332 2446899999999999999999999854 44666
Q ss_pred EEEE
Q psy12132 79 IQLS 82 (126)
Q Consensus 79 ~~l~ 82 (126)
+.|.
T Consensus 88 v~l~ 91 (92)
T cd04977 88 VNLK 91 (92)
T ss_pred EEEE
Confidence 6554
No 64
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.64 E-value=6.7e-15 Score=75.68 Aligned_cols=76 Identities=25% Similarity=0.542 Sum_probs=56.6
Q ss_pred CccEEEEEEeeecCCCeeEEEEC----CEEeccCCc--EEEEec-------CCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRD----GTAITLGGR--IDMHVS-------SEKHSLLVRHIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 74 (126)
|+++.|.|.+.+.|.|.+.|++. +..+..... ...... .....|.|.+++..|.|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333332211 111111 11247999999999999999999999998
Q ss_pred eEEEEEEEe
Q psy12132 75 SQQFIQLSG 83 (126)
Q Consensus 75 ~~~~~~l~~ 83 (126)
..+...|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888777765
No 65
>KOG3513|consensus
Probab=99.64 E-value=1.5e-14 Score=98.83 Aligned_cols=116 Identities=16% Similarity=0.325 Sum_probs=91.9
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc---EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 78 (126)
+..+..|+++.|-|.+.|.|.|+++|++|+..+....+ ..+.. + .|.|.+++..|+|+|+|.+.|..|...+.
T Consensus 340 d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~-g---~L~is~v~~~dsg~YQC~A~Nk~G~i~an 415 (1051)
T KOG3513|consen 340 DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD-G---TLIISNVQESDSGVYQCIAENKYGTIYAN 415 (1051)
T ss_pred eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC-C---EEEEEecccccCeEEEeeeecccceEeee
Confidence 45678899999999999999999999999998875554 44433 3 79999999999999999999999999999
Q ss_pred EEEEecCCCCeeccCcc-----eeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132 79 IQLSGIPNIPVFQKSSR-----RLGPDGYRLVWQVDTYSAIIQYLLKFRER 124 (126)
Q Consensus 79 ~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 124 (126)
..|.|...+|.+...+. ...+..+.+-|.+.+.+. ..+.|.+.
T Consensus 416 A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~---p~~~W~k~ 463 (1051)
T KOG3513|consen 416 AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPK---PKVSWLKG 463 (1051)
T ss_pred eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCc---ceEEEEcC
Confidence 99999888777665333 235667888888865543 24455553
No 66
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.64 E-value=7.3e-15 Score=74.10 Aligned_cols=73 Identities=23% Similarity=0.384 Sum_probs=55.9
Q ss_pred CccEEEEEEeeecCCCeeEEEECCE----Ee-ccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGT----AI-TLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~----~~-~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 79 (126)
|+++.|.|.+.+.|.|.+.|++++. .+ .... ++... ....|.|.++...|.|.|.|.+.|..|...+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT---NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc---cccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 6789999999999999999999631 11 1111 11111 124799999999999999999999999998888
Q ss_pred EEEe
Q psy12132 80 QLSG 83 (126)
Q Consensus 80 ~l~~ 83 (126)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 7764
No 67
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.63 E-value=5.6e-15 Score=75.93 Aligned_cols=76 Identities=24% Similarity=0.493 Sum_probs=56.0
Q ss_pred CccEEEEEEeeecCCCeeEEEECC----EEeccCC--cEEEEe-------cCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDG----TAITLGG--RIDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~----~~~~~~~--~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 74 (126)
|+++.|.|.+.|.|.|++.|+|++ ..+.... ...... ......|.|.++...|.|.|+|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999853 2222111 111111 112247999999999999999999999998
Q ss_pred eEEEEEEEe
Q psy12132 75 SQQFIQLSG 83 (126)
Q Consensus 75 ~~~~~~l~~ 83 (126)
..+.+.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888777765
No 68
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.62 E-value=1.6e-14 Score=70.86 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=48.7
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 76 (126)
+.|.|.+.|.|.|++.|+|++..+... .++. .++ ..|.|.++...|.|.|+|.+.+......
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~ 63 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VDG--YSLVIKDVTEEDAGIYTILLGIKQYNLF 63 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eCC--CEEEECcCCHHHCEEEEEEEEccccceE
Confidence 368999999999999999999887654 3332 222 3799999999999999999998744333
No 69
>KOG3513|consensus
Probab=99.61 E-value=2.7e-14 Score=97.70 Aligned_cols=106 Identities=21% Similarity=0.358 Sum_probs=88.2
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 82 (126)
+.+..|.++.+.|.+.+.|.|.+.|.+.+..+..++++.+..+| +|.|.++.++|.|.|+|.+.|..|.......|.
T Consensus 436 ~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~ 512 (1051)
T KOG3513|consen 436 VMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLI 512 (1051)
T ss_pred EEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEE
Confidence 45667999999999999999999999988877788899888888 899999999999999999999999999999998
Q ss_pred ecCCCCeecc--CcceeCCCeeEEEEEEccC
Q psy12132 83 GIPNIPVFQK--SSRRLGPDGYRLVWQVDTY 111 (126)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 111 (126)
+...+.+... ......+..+.|.|+....
T Consensus 513 Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD 543 (1051)
T KOG3513|consen 513 VKDATRITLAPSNTDVKVGESVTLTCEASHD 543 (1051)
T ss_pred EecCceEEeccchhhhccCceEEEEeecccC
Confidence 8755444332 2233457789999988533
No 70
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.60 E-value=1.3e-14 Score=72.49 Aligned_cols=64 Identities=31% Similarity=0.617 Sum_probs=48.4
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCC----CCCEEEEEEEecCCceeE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~ 76 (126)
+.|.|.+.|.|.|++.|++++..+... .++.... ....|.|..+.. .|.|.|+|.+.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~--~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP--DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC--CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 478999999999999999999877533 2333322 233788888753 689999999999988654
No 71
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.60 E-value=8.7e-14 Score=72.04 Aligned_cols=66 Identities=27% Similarity=0.562 Sum_probs=51.9
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCceeEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 77 (126)
|+++.|.|.+.|.|.|+++|++++..+... .++.+. .+ .|.|.++. ..|.|.|+|.+.|..|....
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AG---NLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-CC---eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 468999999999999999999999887533 233332 23 68887755 58999999999999886643
No 72
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=2.3e-14 Score=71.52 Aligned_cols=65 Identities=25% Similarity=0.543 Sum_probs=48.0
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCC----CCCEEEEEEEecCCceeEE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~ 77 (126)
+.|.|.+.|.|.|++.|++++..+... .++.... ....|.|..+.. .|.|.|+|.+.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 478999999999999999999876432 2333322 223677777654 3789999999999987654
No 73
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.60 E-value=3.3e-14 Score=71.45 Aligned_cols=68 Identities=15% Similarity=0.368 Sum_probs=53.8
Q ss_pred ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 77 (126)
++.+..|+++.|.|.+.|.|.| .+.|++++..+... . ......|.|..+ .|.|.|.|.+.|..|....
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 5678899999999999999999 79999999877531 1 112236888777 4789999999999886543
No 74
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=5e-14 Score=72.74 Aligned_cols=66 Identities=27% Similarity=0.519 Sum_probs=52.4
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCceeEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 77 (126)
+..+.|.|.+.|.|.|.+.|++++..+.. ..++.. .++ .|.|.++. ..|.|.|.|.+.|..|....
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 44799999999999999999999987753 344433 233 78998875 58999999999999886643
No 75
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.59 E-value=3.9e-14 Score=70.67 Aligned_cols=65 Identities=28% Similarity=0.500 Sum_probs=48.5
Q ss_pred EEEEEEeeecCCCeeEEEECCEEec--cCCcEEEEecCCeEEEEEecCCC----CCCEEEEEEEecCCceeEE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~ 77 (126)
+.|.|.+.|.|.|.+.|++++..+. ...++.+.. ....|.|..+.. .|.|.|+|.+.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4689999999999999999998653 334444322 224788887642 4689999999999986644
No 76
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.58 E-value=5.9e-14 Score=70.47 Aligned_cols=68 Identities=29% Similarity=0.631 Sum_probs=50.1
Q ss_pred EEEEEEeeecCCCeeEEEECCEEec--------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEE
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQL 81 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l 81 (126)
+.|.|.+.|.|.|.+.|++++.... ...++....+ ..|.|.++...|.|.|.|.+.|..|.. ...+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4789999999999999999642211 2234443333 379999999999999999999998865 344443
No 77
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.57 E-value=3.5e-13 Score=68.43 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=62.6
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+.+..|+++.|.|.+.+.|.+.+.|++++..+......... .......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 45678999999999999999999999998776543323221 12233579999999999999999999998888777766
Q ss_pred E
Q psy12132 82 S 82 (126)
Q Consensus 82 ~ 82 (126)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 5
No 78
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.56 E-value=4e-13 Score=69.51 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=54.1
Q ss_pred CceeccCCccEEEEEEeeecCCCeeEEEECCEEe--------ccCCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEec
Q psy12132 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASN 70 (126)
Q Consensus 1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~ 70 (126)
+++.+.+|+++.|.|.+.+.|.|.+.|++.+..+ ....++...... ....|.|.++...|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 3678899999999999999999999999876432 122344432222 246899999999999999999876
No 79
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.56 E-value=1.1e-13 Score=68.99 Aligned_cols=70 Identities=21% Similarity=0.492 Sum_probs=52.7
Q ss_pred EEEEEEeee-cCCCeeEEEECCEEeccC----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 11 AEIICNVYA-NPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
+.|.|.+.+ .|.+.+.|++++..+... .++..........|.|.++...|+|.|+|.+.|..|...+.+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999864 677899999999877532 2233333334468999999999999999999999887776553
No 80
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.56 E-value=9.2e-14 Score=70.54 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred CccEEEEEEeeec--CCCeeEEEECCEEeccCC----cEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 8 DMRAEIICNVYAN--PPAKVEWFRDGTAITLGG----RID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 8 g~~~~l~C~~~~~--p~~~~~w~~~~~~~~~~~----~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
|+++.|.|.+.+. |.+.+.|.+.+..+.... +.. .........|.|.+++..|.|.|+|.+.|..+...+...
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999999 788999988765432111 000 111122458999999999999999999999888877776
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
+.+
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 653
No 81
>KOG4194|consensus
Probab=99.56 E-value=4.5e-14 Score=92.00 Aligned_cols=110 Identities=16% Similarity=0.248 Sum_probs=85.0
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEE-ecc--CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTA-ITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~-~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 78 (126)
++....|+.+.|.|.+.|.|.|.+.|.|+|.. ++. ..++..+++. ..+-|.+++.+|.|.|+|.+.|..|+..+.
T Consensus 621 dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isan 698 (873)
T KOG4194|consen 621 DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISAN 698 (873)
T ss_pred cceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCC--CEEEEecccccccceeEEeeeccccceeec
Confidence 46677899999999999999999999997654 543 3455555443 379999999999999999999999999888
Q ss_pred EEEEecCCCCe--eccCcceeCCCeeEEEEEEccCCc
Q psy12132 79 IQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVDTYSA 113 (126)
Q Consensus 79 ~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 113 (126)
..+.|...|.. .........++...+.|...+.++
T Consensus 699 AtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a 735 (873)
T KOG4194|consen 699 ATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA 735 (873)
T ss_pred eEEEEecCCcccccccceEEEecceEEEEEecCCCCC
Confidence 88887554332 223344456888999999877654
No 82
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.54 E-value=3.3e-13 Score=69.95 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=54.0
Q ss_pred CceeccCCccEEEEEEeeecCCCeeEEEECCEE--------eccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTA--------ITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~--------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
+++.+.+|+++.|.|.+.+.|.+.+.|++.+.. .....++..... .....|.|.+++..|.|.|.|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 367889999999999999999999999863221 122345554322 24468999999999999999998864
No 83
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.54 E-value=3.1e-13 Score=68.61 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=53.6
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+..+..|+++.|.|.+. .+.+++.|.+++..+... .++.+. ++ .|.|.+++..|.|.|+|.+.+..
T Consensus 5 ~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 5 QRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred eEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 46788999999999986 467899999999988755 344433 33 69999999999999999988753
No 84
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.54 E-value=3.7e-13 Score=68.27 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=54.3
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCC----cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc--eeEEEEEE
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL 81 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l 81 (126)
|+++.|.|.+.+.|.+.+.|++.+....... +.........+.|.|.+++..|+|.|.|.+.+..+ .....+.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998765322111 11111111245899999999999999999998654 45666666
Q ss_pred Ee
Q psy12132 82 SG 83 (126)
Q Consensus 82 ~~ 83 (126)
.|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 55
No 85
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.53 E-value=5.1e-13 Score=68.78 Aligned_cols=66 Identities=27% Similarity=0.569 Sum_probs=51.2
Q ss_pred CCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCC-CCCEEEEEEEecCCceeE
Q psy12132 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~ 76 (126)
.+.++.|.|.+.|.|.|.+.|++++..+... .++.. ..+ .|.|.++.. .|.|.|+|.+.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~~---~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-VGG---NLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-ECC---EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 3467999999999999999999999887432 23322 222 688887764 899999999999988654
No 86
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.51 E-value=4.7e-13 Score=68.66 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=58.6
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC-CceeE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN-LGSSQ 76 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~ 76 (126)
.+.+.+|+++.|.|.+.+ |.+.+.|++++..+... .++.... ..|.|.+++..|.|.|.|.+.+. .+...
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE----DGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC----CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 456788999999999976 88899999998765433 2332221 25889999999999999999865 45556
Q ss_pred EEEEEEec
Q psy12132 77 QFIQLSGI 84 (126)
Q Consensus 77 ~~~~l~~~ 84 (126)
+.+.|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 66777654
No 87
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.50 E-value=1.6e-12 Score=67.42 Aligned_cols=80 Identities=24% Similarity=0.469 Sum_probs=63.3
Q ss_pred ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccC--CcEEEEec----CCeEEEEEecCCCCC-CEEEEEEEecCCc
Q psy12132 2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNYMCQASNNLG 73 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~C~~~~~~~ 73 (126)
.+.+..|+++.|.|.+.+.|.| .+.|..++..+... .++.+... +..+.|.|.++...| .|.|.|.+.|..|
T Consensus 10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 3567889999999999888877 67898877766543 46655432 356799999998877 6899999999999
Q ss_pred eeEEEEEE
Q psy12132 74 SSQQFIQL 81 (126)
Q Consensus 74 ~~~~~~~l 81 (126)
.....+.|
T Consensus 90 ~d~~~i~L 97 (98)
T cd05898 90 SGTAIIQL 97 (98)
T ss_pred cceEEEEe
Confidence 98877765
No 88
>KOG4221|consensus
Probab=99.48 E-value=1.3e-12 Score=90.25 Aligned_cols=110 Identities=24% Similarity=0.377 Sum_probs=77.3
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
+..+..|+++.|.|.+.+.|.|.+.|.+++..+...+ ++.... ...|.|.++...|+|.|+|.+.|......+...
T Consensus 246 ~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g---~~slliS~a~~~dSg~YtC~Atn~~D~idasae 322 (1381)
T KOG4221|consen 246 NAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVG---GSSLLISNATDDDSGKYTCRATNTNDSIDASAE 322 (1381)
T ss_pred ccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEec---ccceEEeccccccCceEEEEecCCCcccccceE
Confidence 3567789999999999999999999999998887654 332222 237999999999999999999995545555555
Q ss_pred EEecCCCCeeccCc---ceeCCCeeEEEEEEccCCccee
Q psy12132 81 LSGIPNIPVFQKSS---RRLGPDGYRLVWQVDTYSAIIQ 116 (126)
Q Consensus 81 l~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 116 (126)
+.|... |-++..+ ....+..+.+.|...+. |+..
T Consensus 323 v~V~a~-P~~~~~p~~l~A~e~~die~ec~~~g~-p~p~ 359 (1381)
T KOG4221|consen 323 VTVLAP-PGFTKAPTTLVAHESMDIEFECPVSGK-PIPT 359 (1381)
T ss_pred EEEEcC-CCCCCCCcceeeeeccceeEeCCCCCC-Ccce
Confidence 555433 3333322 23445566777766666 4443
No 89
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.48 E-value=9.2e-13 Score=67.00 Aligned_cols=74 Identities=24% Similarity=0.454 Sum_probs=57.4
Q ss_pred ceeccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
.+.+.+|++++|.|.+.+ .|.+.+.|++++..+... . .. ....|.|.+++..|.|.|.|.+.|..|...+...
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~-~~---~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A-MD---FNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c-cc---cCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 356788999999999864 678899999987554321 1 11 1237999999999999999999999888877655
Q ss_pred E
Q psy12132 81 L 81 (126)
Q Consensus 81 l 81 (126)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 4
No 90
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.47 E-value=9.2e-13 Score=67.77 Aligned_cols=75 Identities=20% Similarity=0.389 Sum_probs=56.8
Q ss_pred eeccCCccEEEEEEeee-----cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132 3 SITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 77 (126)
+.+..|.++.|.|...+ +|.|.+.|+|++..+...... ... ...|.|.++...|.|.|+|.+.+..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~~---~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FVK---GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Eec---CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 46778999999998643 256799999999988754433 222 238999999999999999999987665554
Q ss_pred EEEE
Q psy12132 78 FIQL 81 (126)
Q Consensus 78 ~~~l 81 (126)
.+..
T Consensus 81 ~~t~ 84 (92)
T cd05757 81 NVTR 84 (92)
T ss_pred EEEE
Confidence 4433
No 91
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.46 E-value=1e-12 Score=65.64 Aligned_cols=58 Identities=21% Similarity=0.558 Sum_probs=47.3
Q ss_pred eeccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 3 SITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..+.+|++++|.|.+.+.|. ..+.|++++..+... ...|.|.++ ..|+|.|+|.+.+.
T Consensus 10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 45778999999999988775 479999999876321 126889999 99999999999875
No 92
>smart00409 IG Immunoglobulin.
Probab=99.44 E-value=2.7e-11 Score=61.03 Aligned_cols=82 Identities=24% Similarity=0.533 Sum_probs=63.9
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
.+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 46778899999999998877889999997 77665455555554443568999999999999999999987766655555
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
|.+
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 543
No 93
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.44 E-value=2.7e-11 Score=61.03 Aligned_cols=82 Identities=24% Similarity=0.533 Sum_probs=63.9
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
.+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 46778899999999998877889999997 77665455555554443568999999999999999999987766655555
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
|.+
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 543
No 94
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.43 E-value=1.2e-11 Score=73.46 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=71.6
Q ss_pred ceeccCCccEEEEEEeeecC-----------CCeeEEEECCEEe--cc-CCc--E---EEEe-cCCeEEEEEecCCCCCC
Q psy12132 2 HSITAPDMRAEIICNVYANP-----------PAKVEWFRDGTAI--TL-GGR--I---DMHV-SSEKHSLLVRHIKDTDF 61 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p-----------~~~~~w~~~~~~~--~~-~~~--~---~~~~-~~~~~~l~i~~~~~~d~ 61 (126)
++.+.+|+++.|.|.+.+.| .+.+.|+|.+... .. +.+ . .... ......|.|.++...|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 56788999999999986643 4589999987542 11 111 0 0000 01124899999999999
Q ss_pred EEEEEEEecCCceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEc
Q psy12132 62 GNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD 109 (126)
Q Consensus 62 g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (126)
|.|+|.+.|..+.....+.|.+...+. ......+..+.|+|...
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~~----~~~~~~G~~v~L~C~~~ 154 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGTI----NYQFNSGKDSKLHCYGT 154 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCCc----cceEecCCCEEEEeeCC
Confidence 999999999888777888777743221 12234677899999874
No 95
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.42 E-value=8.2e-13 Score=68.04 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=53.0
Q ss_pred ceeccCCccEEEEEEe-eecCCCeeEEEECCEEe--ccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132 2 HSITAPDMRAEIICNV-YANPPAKVEWFRDGTAI--TLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~--~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 73 (126)
.+.+.+|+.+.|.|.. .+.|.+.+.|++++..+ ....+..+. .+| .|.|.++...|.|.|+|.+.|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEeccc
Confidence 3567889999999975 78899999999997653 222332222 234 899999999999999999998653
No 96
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.41 E-value=1.7e-11 Score=63.63 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=52.3
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCE-Ee-------ccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT-AI-------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~-~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
++.+.+|+++.|.|.+.+.+.+.+.|++.+. .+ ....++.... ......|.|.+++..|.|.|.|.+.+..
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 5678899999999999888888999986322 11 1224554432 2234589999999999999999988754
No 97
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.40 E-value=8.7e-12 Score=59.39 Aligned_cols=62 Identities=19% Similarity=0.500 Sum_probs=48.8
Q ss_pred CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+|+++.|.|.+.+.+.+.+.|++++..+.. ..... .....|.|.++...|.|.|.|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 478999999988888899999998877662 21111 123479999999999999999998764
No 98
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.40 E-value=1.4e-12 Score=67.07 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=55.9
Q ss_pred ceeccCCccEEEEEE-eeecCCCeeEEEECCEE-eccCCcEEEEecCCeEEEEEecCCCCCCE-EEEEEEecCC
Q psy12132 2 HSITAPDMRAEIICN-VYANPPAKVEWFRDGTA-ITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNL 72 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~-~~~~p~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 72 (126)
.+.+.+|+.+.|.|. ..|.|.|.+.|.+++.. +....++.+..+| .|.|.++...|.| .|.|.+.+..
T Consensus 12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred eeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEccc
Confidence 467889999999997 68999999999986543 4445666655555 8999999999999 7999999864
No 99
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.40 E-value=7.6e-12 Score=64.49 Aligned_cols=72 Identities=17% Similarity=0.351 Sum_probs=53.0
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEe-c-------------cCCcEEEEe---cCCeEEEEEecCCCCCCEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAI-T-------------LGGRIDMHV---SSEKHSLLVRHIKDTDFGNYM 65 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~ 65 (126)
+.+..|++++|.|...+.+.+.+.|+++++.. . ...++.... ..+...|.|.+++..|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45778999999999988889999999765321 1 112222222 233568999999999999999
Q ss_pred EEEecCCce
Q psy12132 66 CQASNNLGS 74 (126)
Q Consensus 66 C~~~~~~~~ 74 (126)
|.+.+..++
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999987654
No 100
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.39 E-value=1.5e-11 Score=63.26 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=55.0
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECC--EEe----ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe-cCCcee
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDG--TAI----TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGSS 75 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~ 75 (126)
+...+|+++.|.|.. +.|.|.+.|++.. ... ....++... . ..|.|.++.+.|+|.|+|.+. +..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-E---RGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-c---CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 567889999999997 4788999999832 111 122343332 2 269999999999999999997 455555
Q ss_pred EEEEEEEec
Q psy12132 76 QQFIQLSGI 84 (126)
Q Consensus 76 ~~~~~l~~~ 84 (126)
...+.|.|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 666666653
No 101
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.39 E-value=9.4e-12 Score=62.82 Aligned_cols=64 Identities=19% Similarity=0.343 Sum_probs=53.5
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 70 (126)
++.+..|+++.|.|...+ +.+.+.|++++..+..+.++.....+ |.|..++..|+|.|.|.+..
T Consensus 5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence 567889999999999985 47799999999888766666655554 88999999999999998763
No 102
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.37 E-value=5.3e-11 Score=74.42 Aligned_cols=115 Identities=14% Similarity=0.215 Sum_probs=73.3
Q ss_pred eccCCccEEEEEE-----eeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE-
Q psy12132 4 ITAPDMRAEIICN-----VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ- 77 (126)
Q Consensus 4 ~~~~g~~~~l~C~-----~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~- 77 (126)
.+.+|..+.+.|. ..+.|.+.+.|+++.. + ...++..... ..|.|.++...|.|.|+|.+.+..+....
T Consensus 132 ~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~ 206 (326)
T PHA02785 132 IVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKNDAGYYTCVLKYIYGDKTYN 206 (326)
T ss_pred eecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEeecChhhCeEEEEEEEeccCCEEEe
Confidence 3557888999997 2357888999987642 2 2334433322 37999999999999999999987665432
Q ss_pred ---EEEEEec--CCCCeecc--CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132 78 ---FIQLSGI--PNIPVFQK--SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123 (126)
Q Consensus 78 ---~~~l~~~--~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~ 123 (126)
.+.+.+. ..+|.... ......+..+.|.|.+.+.++.....++|.+
T Consensus 207 ~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k 259 (326)
T PHA02785 207 VTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS 259 (326)
T ss_pred EEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEE
Confidence 2234332 23332222 2223347789999999877543222455544
No 103
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.35 E-value=1.3e-10 Score=59.90 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=55.4
Q ss_pred CceeccCCccEEEEEEeeecCCCeeEEEECCEEe--------ccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
+++.+.+|+++.|.|.+.+.....+.|++.+..+ ....|+.... .+...+|.|.+++..|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 3678899999999999988777778888755332 2446776655 345678999999999999999988753
No 104
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.34 E-value=8.9e-11 Score=60.73 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCCc-EEEEec-C---CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132 3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGR-IDMHVS-S---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~~-~~~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 76 (126)
+.+.+|+++.|.|.+.+.|.|+ +.|.+.+..+..... ...... . -.+.|.+.+++..|.|.|+|.+.|..+..+
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 5788999999999999999997 999998765532221 111111 1 236899999999999999999999988888
Q ss_pred EEEEEEe
Q psy12132 77 QFIQLSG 83 (126)
Q Consensus 77 ~~~~l~~ 83 (126)
..+.|.+
T Consensus 93 ~tF~l~v 99 (101)
T cd05860 93 VTFNVYV 99 (101)
T ss_pred EEEEEEE
Confidence 8888775
No 105
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.33 E-value=1.7e-11 Score=62.00 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=49.4
Q ss_pred eccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132 4 ITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 74 (126)
.+.+|++++|.|.+.. .+.+.+.|++++..+.... ....|.|..+...|+|.|.|.+.+..+.
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 5778999999999853 4566899999987653211 1237999999999999999999987653
No 106
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.33 E-value=1.3e-11 Score=59.38 Aligned_cols=61 Identities=23% Similarity=0.549 Sum_probs=44.6
Q ss_pred CccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCCe--EEEEEecCCCCCCEEEEEEE
Q psy12132 8 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQA 68 (126)
Q Consensus 8 g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~ 68 (126)
|+++.|.|.+ .+.+...+.|++++................. ..|.|.++...|.|.|+|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6677789999998765543333222222211 13999999999999999975
No 107
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.32 E-value=3.4e-11 Score=71.55 Aligned_cols=66 Identities=17% Similarity=0.394 Sum_probs=53.1
Q ss_pred eccCCccEEEEEEeee-----cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 4 ITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
.+.+|+++.|.|.+.+ .|.|++.|+|++..+....++....+ ...|.|.+++..|+|.|+|.+...
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence 4567999999999752 35789999999998876666654433 238999999999999999998864
No 108
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.28 E-value=1.3e-10 Score=59.12 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=52.8
Q ss_pred CccEEEEEEeeecCCC--eeEEEECCEEecc---CC--cE-EEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132 8 DMRAEIICNVYANPPA--KVEWFRDGTAITL---GG--RI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~---~~--~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 79 (126)
|+++.|.|.+.+.+.+ .+.|...+..... .. +. ........+.|.|.+++..|.|.|+|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 6889999999876644 7899876643211 11 11 011112345899999999999999999999887777666
Q ss_pred EEEe
Q psy12132 80 QLSG 83 (126)
Q Consensus 80 ~l~~ 83 (126)
.|.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 6655
No 109
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.26 E-value=1.2e-10 Score=58.28 Aligned_cols=70 Identities=27% Similarity=0.652 Sum_probs=52.8
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc-eeEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG-SSQQFIQL 81 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~l 81 (126)
..+.+|+++.|.|.+.+.|.+.+.|++++..+..... .+.+..+...|.|.|.|.+.+..+ .....+.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 4567899999999999888899999998876652211 155677888999999999998554 33445554
Q ss_pred E
Q psy12132 82 S 82 (126)
Q Consensus 82 ~ 82 (126)
.
T Consensus 79 ~ 79 (80)
T PF13895_consen 79 T 79 (80)
T ss_dssp E
T ss_pred e
Confidence 4
No 110
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.25 E-value=1.7e-10 Score=59.93 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=53.4
Q ss_pred ceeccCCccEEEEEEee-----------ecCCCeeEEEECCEEeccCCc-----EEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132 2 HSITAPDMRAEIICNVY-----------ANPPAKVEWFRDGTAITLGGR-----IDMHVSSEKHSLLVRHIKDTDFGNYM 65 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~-----------~~p~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~ 65 (126)
...+.+|+.+.|.|... ......+.|+|++..+..... .++...+ ..|.|..+..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEEE
Confidence 35678999999999862 122347999998644332211 1222222 27999999999999999
Q ss_pred EEEecCCceeEEEEEEE
Q psy12132 66 CQASNNLGSSQQFIQLS 82 (126)
Q Consensus 66 C~~~~~~~~~~~~~~l~ 82 (126)
|.+.|........+.|.
T Consensus 87 C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 87 CVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEECCCCcceEEEEEEE
Confidence 99999765555555444
No 111
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.20 E-value=8.8e-10 Score=69.05 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=67.0
Q ss_pred eeccCCccEEEEEEe-----eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132 3 SITAPDMRAEIICNV-----YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~-----~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 77 (126)
..+.+|+.+.+.|.+ .|.|.+++.|+|++.... +.....++ ..|.|.++...|+|.|+|.+.|..+....
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g--~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~ 110 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNG--SNMLILNPTQSDSGIYICITKNETYCDMM 110 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCC--ceEEEcccCcccCeEEEEEEECCCcceEE
Confidence 356789999999997 578889999999874311 11122222 25778999999999999999998877777
Q ss_pred EEEEEecCCC-Cee---ccCcceeCCCeeEEEEE
Q psy12132 78 FIQLSGIPNI-PVF---QKSSRRLGPDGYRLVWQ 107 (126)
Q Consensus 78 ~~~l~~~~~~-~~~---~~~~~~~~~~~~~l~~~ 107 (126)
.+.|.+.... +.+ ..+.....+..+.+.|.
T Consensus 111 s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~ 144 (326)
T PHA02785 111 SLNLTIVSVSESNIDLISYPQIVNERSTGEMVCP 144 (326)
T ss_pred EEEEEEEecCCCccceeeccceecccCcEEEECC
Confidence 7766653322 111 11122235566778885
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.18 E-value=3.6e-10 Score=58.29 Aligned_cols=71 Identities=13% Similarity=0.301 Sum_probs=52.0
Q ss_pred eeccCCccEEEEEEe-e----ecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132 3 SITAPDMRAEIICNV-Y----ANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~-~----~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 75 (126)
+.+..|.+..|.|.- . ..+.+.+.|+|++..+.... ++....+ ...|.|.++...|.|.|+|.+.+..+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 456778899999973 2 34567999999998876433 3322122 2379999999999999999999875433
No 113
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.13 E-value=1.9e-09 Score=57.23 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=52.7
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCE---E---e--------ccCCcEEEEec--CCeEEEEEecCCCCCCEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT---A---I--------TLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYM 65 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~---~---~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~ 65 (126)
.+.+.+|+++.|.|.+.+.+...+.|++... . + ....++.+... .....|.|.+++..|+|.|.
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence 4678899999999999877778999998431 1 1 01245544432 25679999999999999999
Q ss_pred EEEecCC
Q psy12132 66 CQASNNL 72 (126)
Q Consensus 66 C~~~~~~ 72 (126)
|.+.+..
T Consensus 87 C~~~~~~ 93 (109)
T cd04983 87 CALSESG 93 (109)
T ss_pred EEEecCC
Confidence 9988653
No 114
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.12 E-value=2.9e-09 Score=56.69 Aligned_cols=77 Identities=12% Similarity=0.254 Sum_probs=52.1
Q ss_pred CCccEEEEEEeeecC------------CCeeEEEECC--E---Eec-c----------CCcEEEEe---cCCeEEEEEec
Q psy12132 7 PDMRAEIICNVYANP------------PAKVEWFRDG--T---AIT-L----------GGRIDMHV---SSEKHSLLVRH 55 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p------------~~~~~w~~~~--~---~~~-~----------~~~~~~~~---~~~~~~l~i~~ 55 (126)
.|++++|.|...... .+.+.|+|.. . .+. . ..|+.+.. ...++.|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 3589999842 1 110 0 12444432 22567999999
Q ss_pred CCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 56 IKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 56 ~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
++..|+|.|.|.+.+........+.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999876555555555554
No 115
>KOG4221|consensus
Probab=99.08 E-value=6.1e-09 Score=72.96 Aligned_cols=109 Identities=18% Similarity=0.304 Sum_probs=79.7
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~ 80 (126)
+..+..|+++.|.|.+.+-|.|.+.|.++..++...+++....++ .|.|.++...|.|.|+|.+.+...+. +....
T Consensus 149 ~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ 225 (1381)
T KOG4221|consen 149 STTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAE 225 (1381)
T ss_pred ceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeE
Confidence 456788999999999988888899999999877777777777777 89999999999999999998753222 22233
Q ss_pred EEecCCCC-----eecc---CcceeCCCeeEEEEEEccCCc
Q psy12132 81 LSGIPNIP-----VFQK---SSRRLGPDGYRLVWQVDTYSA 113 (126)
Q Consensus 81 l~~~~~~~-----~~~~---~~~~~~~~~~~l~~~~~~~~~ 113 (126)
+.+...+. .+.. ......++.+.|.|.+.+.+.
T Consensus 226 ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~ 266 (1381)
T KOG4221|consen 226 LTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK 266 (1381)
T ss_pred EEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC
Confidence 33322111 1222 222457889999999988754
No 116
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.08 E-value=4.5e-09 Score=55.34 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=51.8
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECC-----EEec--------------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT--------------LGGRIDMHVSSEKHSLLVRHIKDTDFGN 63 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~--------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 63 (126)
..+.+|+++.|.|.........+.|+|.. ..+. ...+..+..++ +|.|.++...|.|.
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~ 84 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF 84 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence 45678999999997653334489999952 1110 11333344444 89999999999999
Q ss_pred EEEEEecCC-ceeEEEEEEE
Q psy12132 64 YMCQASNNL-GSSQQFIQLS 82 (126)
Q Consensus 64 y~C~~~~~~-~~~~~~~~l~ 82 (126)
|+|.+.+.. ....+.+.|.
T Consensus 85 Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 85 YTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEeCCccEEEEEEEEE
Confidence 999988765 3444554443
No 117
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.06 E-value=2.4e-09 Score=56.41 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=50.6
Q ss_pred eccCCccEEEEEEeeec-CCCeeEEEECCE-----Eec------------cCCcEEEEecC--CeEEEEEecCCCCCCEE
Q psy12132 4 ITAPDMRAEIICNVYAN-PPAKVEWFRDGT-----AIT------------LGGRIDMHVSS--EKHSLLVRHIKDTDFGN 63 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~-----~~~------------~~~~~~~~~~~--~~~~l~i~~~~~~d~g~ 63 (126)
.+.+|+++.|.|.+... +...+.|++... .+. ...++.+.... ....|.|.+++..|.|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 56789999999999865 567899998432 110 11344443332 46789999999999999
Q ss_pred EEEEEecCCc
Q psy12132 64 YMCQASNNLG 73 (126)
Q Consensus 64 y~C~~~~~~~ 73 (126)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999887653
No 118
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=7.7e-09 Score=52.14 Aligned_cols=63 Identities=19% Similarity=0.414 Sum_probs=43.1
Q ss_pred cEEEEEEeee-cCCCeeEEEECCEEeccCCc-EEEEecCC----eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGR-IDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 10 ~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
.+.|.|.+.+ .|.+.+.|++++..+..... .....++. .+.|.+......|.+.|+|.+.+..
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 3689999986 58889999999987653211 11112221 2357777776778889999998864
No 119
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.06 E-value=1e-08 Score=53.62 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=50.4
Q ss_pred CccEEEEEEeeecCC---CeeEEEECC--EEec--c-------------CCcEEEEec---CCeEEEEEecCCCCCCEEE
Q psy12132 8 DMRAEIICNVYANPP---AKVEWFRDG--TAIT--L-------------GGRIDMHVS---SEKHSLLVRHIKDTDFGNY 64 (126)
Q Consensus 8 g~~~~l~C~~~~~p~---~~~~w~~~~--~~~~--~-------------~~~~~~~~~---~~~~~l~i~~~~~~d~g~y 64 (126)
|+++.|.|....... ..+.|++.. ..+. . ..++.+... ....+|.|.+++..|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 688999999853222 268898744 1110 0 023333211 2346899999999999999
Q ss_pred EEEEecCCceeEEEEEEEe
Q psy12132 65 MCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 65 ~C~~~~~~~~~~~~~~l~~ 83 (126)
+|.+.+..+.....+.|.+
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987666777776654
No 120
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.04 E-value=1.7e-08 Score=53.30 Aligned_cols=77 Identities=18% Similarity=0.452 Sum_probs=52.3
Q ss_pred CCccEEEEEEeeecC------CCeeEEEECC-----E-Eec--cCCcE--------EEE---ecCCeEEEEEecCCCCCC
Q psy12132 7 PDMRAEIICNVYANP------PAKVEWFRDG-----T-AIT--LGGRI--------DMH---VSSEKHSLLVRHIKDTDF 61 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p------~~~~~w~~~~-----~-~~~--~~~~~--------~~~---~~~~~~~l~i~~~~~~d~ 61 (126)
.|++++|.|.....+ ...+.|++.. . .+. ..... +.. ....+.+|.|.+++..|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987543 4589999862 1 111 11111 111 122457999999999999
Q ss_pred EEEEEEEecCCceeEEEEEEEe
Q psy12132 62 GNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 62 g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEE
Confidence 9999999987666666666665
No 121
>KOG4222|consensus
Probab=99.03 E-value=2e-09 Score=74.79 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=70.7
Q ss_pred eeccCCccEEEEEEe-eecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE-E
Q psy12132 3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-F 78 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~ 78 (126)
+.+..|+.++|-|.. .+.|.|.+.|.|++..+... ........| .|.|.++.+.|.|+|.|.+.|..|.... .
T Consensus 141 ~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~ 217 (1281)
T KOG4222|consen 141 VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNMVGERESIP 217 (1281)
T ss_pred ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC---cEEEeccccCCCceeeeeeccccccccccc
Confidence 456779999999985 78899999999999887632 333334444 7999999999999999999998876632 3
Q ss_pred EEEEecCCCCeeccC---cceeCCCeeEEEEEEccCC
Q psy12132 79 IQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYS 112 (126)
Q Consensus 79 ~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 112 (126)
..+.+... |.+... .....+..+.+.|.+.|.+
T Consensus 218 A~lsv~e~-P~f~~rp~~~~v~~g~~~~f~c~v~GdP 253 (1281)
T KOG4222|consen 218 ARLSVQEK-PWFWKRPKDLAVLVGAAAEFDCRVGGDP 253 (1281)
T ss_pred ceeeeccC-CccccccccceeecccccccccccCCCC
Confidence 34444322 222221 1122334456666554443
No 122
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.03 E-value=1.1e-08 Score=51.11 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=45.3
Q ss_pred EEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEec---CCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132 11 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 11 ~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 74 (126)
+.|.|.. .+.|++.++|+++++.+..... ....+ .....|.+.....+|.+.|+|.+.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 6899997 4678889999999998853211 00000 01236888888888899999999997654
No 123
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.00 E-value=1.6e-08 Score=53.46 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=52.7
Q ss_pred CCccEEEEEEeeecC------CCeeEEEECCE------E--ecc----------CCcEEEEec-CCeEEEEEecCCCCCC
Q psy12132 7 PDMRAEIICNVYANP------PAKVEWFRDGT------A--ITL----------GGRIDMHVS-SEKHSLLVRHIKDTDF 61 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p------~~~~~w~~~~~------~--~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~ 61 (126)
.|++++|.|.....| ...+.|++... . +.. ..++.+... ....+|.|.+++..|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999987553 34699998531 1 110 123333221 2356899999999999
Q ss_pred EEEEEEEecCCceeEEEEEEEe
Q psy12132 62 GNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 62 g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred EEEEEEEEecccceEEEEEEEE
Confidence 9999999887776677766664
No 124
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.98 E-value=2.9e-08 Score=52.84 Aligned_cols=77 Identities=17% Similarity=0.391 Sum_probs=51.8
Q ss_pred CCccEEEEEEeeecC----------CCeeEEEECC--EE---e-cc----------CCcEEEE---ecCCeEEEEEecCC
Q psy12132 7 PDMRAEIICNVYANP----------PAKVEWFRDG--TA---I-TL----------GGRIDMH---VSSEKHSLLVRHIK 57 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p----------~~~~~w~~~~--~~---~-~~----------~~~~~~~---~~~~~~~l~i~~~~ 57 (126)
.|++++|+|.....+ ...+.|++.. .. + .. ..|+.+. .....+.|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986543 2569999842 11 1 00 1233332 12345789999999
Q ss_pred CCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 58 DTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 58 ~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
..|.|.|.|.+..........+.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 99999999998876555666666654
No 125
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.97 E-value=1.3e-08 Score=52.39 Aligned_cols=63 Identities=17% Similarity=0.338 Sum_probs=44.8
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEec------------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAIT------------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~------------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 69 (126)
|++++|.|.........+.|++...... ...+..+.. +.+|.|.+++..|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP---NGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC---CceEEEccCCchhcEEEEEEEE
Confidence 7899999988765566899998642210 012222222 3589999999999999999988
Q ss_pred cCCc
Q psy12132 70 NNLG 73 (126)
Q Consensus 70 ~~~~ 73 (126)
...+
T Consensus 78 ~~~~ 81 (92)
T cd05741 78 STNG 81 (92)
T ss_pred cCCC
Confidence 7653
No 126
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.97 E-value=1.6e-08 Score=55.97 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=51.4
Q ss_pred EEEEecCCCCCCEEEEEEEecCCceeEEEEEEEecCCCCeeccCc--ceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132 50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS--RRLGPDGYRLVWQVDTYSAIIQYLLKFRER 124 (126)
Q Consensus 50 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 124 (126)
+|.|.+++..|.|.|.|.+.+..+.....+.|.+...|.+..... ....+..+.|+|.+.+..|.. ..+.|++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~-~~i~W~~~ 77 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLD-VQVEWTRE 77 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCC-eEEEEEEC
Confidence 689999999999999999998777777777777754443322221 112456789999998875532 24555543
No 127
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.96 E-value=1.7e-08 Score=53.72 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=49.8
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCE--E---ec-------------cCCcEEEEecC-CeEEEEEecCCCCCCE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT--A---IT-------------LGGRIDMHVSS-EKHSLLVRHIKDTDFG 62 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~--~---~~-------------~~~~~~~~~~~-~~~~l~i~~~~~~d~g 62 (126)
.+.+.+|++++|.|.+.+ +.+.+.|++... . +. ...++...... ....|.|.+++..|+|
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 357889999999999976 677899998531 1 10 01344433322 3568999999999999
Q ss_pred EEEEEEecC
Q psy12132 63 NYMCQASNN 71 (126)
Q Consensus 63 ~y~C~~~~~ 71 (126)
.|.|.+.+.
T Consensus 86 ~Y~Ca~~~~ 94 (110)
T cd05899 86 VYLCASSLG 94 (110)
T ss_pred EEEEEeeCC
Confidence 999998764
No 128
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.95 E-value=4.9e-08 Score=52.34 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=49.2
Q ss_pred ceeccCCccEEEEEEeeecC----CCeeEEEE---------------CCEEeccC-----CcEEEEec--CCeEEEEEec
Q psy12132 2 HSITAPDMRAEIICNVYANP----PAKVEWFR---------------DGTAITLG-----GRIDMHVS--SEKHSLLVRH 55 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~---------------~~~~~~~~-----~~~~~~~~--~~~~~l~i~~ 55 (126)
.+.+..|+++.|.|...... ...+.|.+ ++...... .|..+..+ ..+.++.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 46778899999999986532 34799933 23322110 24433322 2457999999
Q ss_pred CCCCCCEEEEEEEecCCc
Q psy12132 56 IKDTDFGNYMCQASNNLG 73 (126)
Q Consensus 56 ~~~~d~g~y~C~~~~~~~ 73 (126)
++..|.|.|+|.+.|..+
T Consensus 87 v~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CCcccCEEEEEEEEcCCC
Confidence 999999999999998644
No 129
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.95 E-value=3.2e-08 Score=51.46 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=49.5
Q ss_pred ccEEEEEEeeecC---CCeeEEEECCE----Ee---c--------c--CCcEEEEecC-CeEEEEEecCCCCCCEEEEEE
Q psy12132 9 MRAEIICNVYANP---PAKVEWFRDGT----AI---T--------L--GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ 67 (126)
Q Consensus 9 ~~~~l~C~~~~~p---~~~~~w~~~~~----~~---~--------~--~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~ 67 (126)
+++.|.|.....+ ...+.|+|... .+ . . ..+..+.... ...+|.|.++...|.|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987544 33799998532 11 0 0 1122222111 356899999999999999999
Q ss_pred Eec-CCceeEEEEEEEe
Q psy12132 68 ASN-NLGSSQQFIQLSG 83 (126)
Q Consensus 68 ~~~-~~~~~~~~~~l~~ 83 (126)
+.. ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 874 5677777776664
No 130
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.94 E-value=1.4e-08 Score=53.66 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=48.7
Q ss_pred eeccCCccEEEEEEeeecC-CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANP-PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 67 (126)
+.+.+|+++.|.|.+.+.. ...+.|++.. . .+. ...++..........|.|.+++..|+|.|.|.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca 89 (106)
T cd04980 10 LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQ 89 (106)
T ss_pred EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEE
Confidence 5678899999999987555 5679998742 1 111 01244443334456899999999999999998
Q ss_pred Eec
Q psy12132 68 ASN 70 (126)
Q Consensus 68 ~~~ 70 (126)
+.+
T Consensus 90 ~~~ 92 (106)
T cd04980 90 QYG 92 (106)
T ss_pred EeC
Confidence 764
No 131
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.94 E-value=1.6e-08 Score=54.27 Aligned_cols=68 Identities=16% Similarity=0.398 Sum_probs=50.2
Q ss_pred eeccCCccEEEEEEeee--cCCCeeEEEEC--CEE---ec--------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132 3 SITAPDMRAEIICNVYA--NPPAKVEWFRD--GTA---IT--------------LGGRIDMHVSS--EKHSLLVRHIKDT 59 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~--~p~~~~~w~~~--~~~---~~--------------~~~~~~~~~~~--~~~~l~i~~~~~~ 59 (126)
+.+.+|+++.|.|.+.+ .+.+.+.|++. +.. +. ...++.+.... ....|.|.+++..
T Consensus 8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 87 (116)
T cd04982 8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE 87 (116)
T ss_pred EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence 56778999999999876 56778999984 211 10 12455554444 4578999999999
Q ss_pred CCEEEEEEEec
Q psy12132 60 DFGNYMCQASN 70 (126)
Q Consensus 60 d~g~y~C~~~~ 70 (126)
|+|.|.|.+..
T Consensus 88 Dsg~Y~C~~~~ 98 (116)
T cd04982 88 DSATYYCAYWE 98 (116)
T ss_pred HCEEEEEEEec
Confidence 99999998764
No 132
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.92 E-value=5.7e-09 Score=53.67 Aligned_cols=65 Identities=14% Similarity=0.311 Sum_probs=48.3
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..+..|++++|.|... .+...+.|+++|...... . ....+....+.|.++...|.|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3567899999999886 667789999988643211 0 111223457999999999999999998775
No 133
>PHA03376 BARF1; Provisional
Probab=98.92 E-value=1.7e-07 Score=53.53 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=47.9
Q ss_pred eeccCCccEEEEEEeeec---CCCeeEEEEC----CEEe-c------------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132 3 SITAPDMRAEIICNVYAN---PPAKVEWFRD----GTAI-T------------LGGRIDMHVSSEKHSLLVRHIKDTDFG 62 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~---p~~~~~w~~~----~~~~-~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g 62 (126)
+....|+++.|+|..... +...+.|+|. ...+ . ...++.+..+.++.+|.|.+++..|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 567789999999987521 2346899994 2221 1 012333333345678999999999999
Q ss_pred EEEEEEecCC
Q psy12132 63 NYMCQASNNL 72 (126)
Q Consensus 63 ~y~C~~~~~~ 72 (126)
.|.|.+....
T Consensus 101 tY~C~fQkge 110 (221)
T PHA03376 101 NYLCRMKLGE 110 (221)
T ss_pred eEEEEEEcCC
Confidence 9999988643
No 134
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.90 E-value=2.8e-08 Score=51.70 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=50.3
Q ss_pred cCCccEEEEEEeee-cCCCeeEEEECCEEec-cC------------CcE--EEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132 6 APDMRAEIICNVYA-NPPAKVEWFRDGTAIT-LG------------GRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69 (126)
Q Consensus 6 ~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~-~~------------~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 69 (126)
..|++++|.|.... .....+.|++....+. .. ..+ +........+|.|.+++..|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998753 3345789998643221 10 111 11222335789999999999999999988
Q ss_pred cCCcee-EEEEEEEe
Q psy12132 70 NNLGSS-QQFIQLSG 83 (126)
Q Consensus 70 ~~~~~~-~~~~~l~~ 83 (126)
...+.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 765433 44555543
No 135
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.89 E-value=3.3e-08 Score=51.53 Aligned_cols=67 Identities=21% Similarity=0.393 Sum_probs=48.7
Q ss_pred eccCCccEEEEEEeeec--CCCeeEEEECCE--E---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132 4 ITAPDMRAEIICNVYAN--PPAKVEWFRDGT--A---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~--p~~~~~w~~~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 67 (126)
.+.+|+++.|.|..... ....+.|++... . +. ...++..........|.|.+++..|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57889999999998654 456799987431 1 11 01355555555567899999999999999998
Q ss_pred Eec
Q psy12132 68 ASN 70 (126)
Q Consensus 68 ~~~ 70 (126)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 764
No 136
>KOG4222|consensus
Probab=98.87 E-value=9e-09 Score=71.72 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 81 (126)
+..+..|..+.+.|.+.|.|.|++.|.+.+..+.. .++.+..+ ..++.|.++...|.|.|.|.+.|..|...+...+
T Consensus 234 ~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~l 310 (1281)
T KOG4222|consen 234 DLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR-SRYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATL 310 (1281)
T ss_pred cceeecccccccccccCCCCCCceeeeccCCCCCc-cceeeeec--cccccccccCCCcccceeeeccccccccccccce
Confidence 35677888899999999999999999996655543 45555443 1379999999999999999999999888877777
Q ss_pred EecCCCCeeccC--cceeCCCeeEEEEEEccCCcce
Q psy12132 82 SGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSAII 115 (126)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 115 (126)
.|...|..-... .....+..+.+.|+..|.++..
T Consensus 311 tV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pa 346 (1281)
T KOG4222|consen 311 TVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPA 346 (1281)
T ss_pred EEecCcccccccCccccccCceEEeeeecCCCCCcc
Confidence 776444433332 2233455788899887776544
No 137
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.83 E-value=4e-07 Score=48.67 Aligned_cols=76 Identities=20% Similarity=0.416 Sum_probs=51.4
Q ss_pred CccEEEEEEeeecC-----------CCeeEEEEC-----C-----EEe--cc----------CCcEEEEec---CCeEEE
Q psy12132 8 DMRAEIICNVYANP-----------PAKVEWFRD-----G-----TAI--TL----------GGRIDMHVS---SEKHSL 51 (126)
Q Consensus 8 g~~~~l~C~~~~~p-----------~~~~~w~~~-----~-----~~~--~~----------~~~~~~~~~---~~~~~l 51 (126)
|.+++|+|.....| ...+.|.+- + ..+ .. ..|..+... .++++|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999997443 127999873 1 111 11 123333222 246799
Q ss_pred EEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 52 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 52 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
.|.+++..|.|.|.|.+..........+.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 99999999999999999887666666666664
No 138
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.81 E-value=1.1e-08 Score=50.31 Aligned_cols=57 Identities=25% Similarity=0.590 Sum_probs=39.1
Q ss_pred EEEEEEeeecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132 11 AEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70 (126)
Q Consensus 11 ~~l~C~~~~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 70 (126)
+.|.|.+.+.+ .+.+.|+.......... .........|.+.++..+|.|.|+|.+.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNS---RGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEE---EEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeee---eeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999998777 77899981111111111 11122345899999999999999999875
No 139
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.79 E-value=1.4e-07 Score=50.59 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=47.4
Q ss_pred ceeccCCccEEEEEEeeecC----CCeeEEEEC----CE--Ee-c--------cC----CcEEEEe--cCCeEEEEEecC
Q psy12132 2 HSITAPDMRAEIICNVYANP----PAKVEWFRD----GT--AI-T--------LG----GRIDMHV--SSEKHSLLVRHI 56 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~----~~--~~-~--------~~----~~~~~~~--~~~~~~l~i~~~ 56 (126)
.+.+..|+++.|.|.....+ ...+.|++. +. .+ . .. .+..+.. ...+++|.|.++
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 46788999999999986433 236999742 11 11 0 01 1222111 123568999999
Q ss_pred CCCCCEEEEEEEecCCc
Q psy12132 57 KDTDFGNYMCQASNNLG 73 (126)
Q Consensus 57 ~~~d~g~y~C~~~~~~~ 73 (126)
+..|.|.|.|.+.+..+
T Consensus 87 ~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 87 QPTDNGTYTCQVKNPPD 103 (115)
T ss_pred ChhhCEEEEEEEEeCCC
Confidence 99999999999987543
No 140
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.78 E-value=2.7e-07 Score=52.70 Aligned_cols=83 Identities=16% Similarity=0.296 Sum_probs=56.9
Q ss_pred ceeccCCccEEEEEEee-ecCCCeeEEEECCEEec----------c--CCcEEE-EecCCeEEEEEecCCCCCCEEEEEE
Q psy12132 2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAIT----------L--GGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQ 67 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~----------~--~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~ 67 (126)
.+.+.+|+++.|.|... +...+.++|.|....+. . ..|+.+ ...-....+.|.++..+|.|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 35788999999999984 54577899998632221 0 124442 2333456899999999999999998
Q ss_pred Eec-CCc-eeEEEEEEEec
Q psy12132 68 ASN-NLG-SSQQFIQLSGI 84 (126)
Q Consensus 68 ~~~-~~~-~~~~~~~l~~~ 84 (126)
+.. ..| ..+...-|.+.
T Consensus 104 F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEecCCCCCceeEEEEEEE
Confidence 764 445 55666666654
No 141
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.77 E-value=3.4e-07 Score=48.61 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=51.4
Q ss_pred CCccEEEEEEeeecC-------CCeeEEEECC-----EEe--c--c----------CCcEEEEec---CCeEEEEEecCC
Q psy12132 7 PDMRAEIICNVYANP-------PAKVEWFRDG-----TAI--T--L----------GGRIDMHVS---SEKHSLLVRHIK 57 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p-------~~~~~w~~~~-----~~~--~--~----------~~~~~~~~~---~~~~~l~i~~~~ 57 (126)
.|+++.|+|...-.| .+.+.|.+.. ... . . ..|..+... ..+++|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 377899999975332 3579998741 111 0 1 124444321 246799999999
Q ss_pred CCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132 58 DTDFGNYMCQASNNLGSSQQFIQLSG 83 (126)
Q Consensus 58 ~~d~g~y~C~~~~~~~~~~~~~~l~~ 83 (126)
..|.|.|.|.+..........+.|.|
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEE
Confidence 99999999999886555566666654
No 142
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.75 E-value=4.7e-07 Score=48.63 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=46.5
Q ss_pred ceeccCCccEEEEEEeeecC----CCeeEEEECC------EEe-c---------cC----CcEEEEec--CCeEEEEEec
Q psy12132 2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG------TAI-T---------LG----GRIDMHVS--SEKHSLLVRH 55 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~------~~~-~---------~~----~~~~~~~~--~~~~~l~i~~ 55 (126)
.+.+..|++++|.|...... ...+.|++.. ..+ . .. .|+.+... ..+++|.|.+
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 35678899999999886432 2469997632 111 0 01 12222211 2347899999
Q ss_pred CCCCCCEEEEEEEecCC
Q psy12132 56 IKDTDFGNYMCQASNNL 72 (126)
Q Consensus 56 ~~~~d~g~y~C~~~~~~ 72 (126)
++..|.|.|.|.+.+..
T Consensus 87 v~~~D~G~Y~C~v~~~~ 103 (116)
T cd05715 87 LQFTDNGTYTCDVKNPP 103 (116)
T ss_pred CCcccCEEEEEEEEeCC
Confidence 99999999999988754
No 143
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.74 E-value=5.1e-07 Score=47.22 Aligned_cols=74 Identities=22% Similarity=0.475 Sum_probs=48.1
Q ss_pred cEEEEEEeeecC---CCeeEEEECCE-----Ee---cc--C--------CcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132 10 RAEIICNVYANP---PAKVEWFRDGT-----AI---TL--G--------GRIDMHV--SSEKHSLLVRHIKDTDFGNYMC 66 (126)
Q Consensus 10 ~~~l~C~~~~~p---~~~~~w~~~~~-----~~---~~--~--------~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C 66 (126)
++.|.|...... ...+.|++... .+ .. + .+..+.. ...+..|.|.+++..|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986443 33789998321 11 10 0 2333332 2235689999999999999999
Q ss_pred EEec-CCceeEEEEEEEe
Q psy12132 67 QASN-NLGSSQQFIQLSG 83 (126)
Q Consensus 67 ~~~~-~~~~~~~~~~l~~ 83 (126)
.+.+ ..|...+.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9886 5565566655554
No 144
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.73 E-value=8.7e-07 Score=46.23 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=48.9
Q ss_pred cEEEEEEeeec-CCC---eeEEEECC----EEec--c-----------CCcEEEEe-cCCeEEEEEecCCCCCCEEEEEE
Q psy12132 10 RAEIICNVYAN-PPA---KVEWFRDG----TAIT--L-----------GGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQ 67 (126)
Q Consensus 10 ~~~l~C~~~~~-p~~---~~~w~~~~----~~~~--~-----------~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~ 67 (126)
++.|.|..... |.. .++|.+.. ..+. . .+|..+.. ...+++|.|.+++..|.|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999998742 212 59998731 1111 1 12333221 11357899999999999999999
Q ss_pred Eec-CCceeEEEEEEEe
Q psy12132 68 ASN-NLGSSQQFIQLSG 83 (126)
Q Consensus 68 ~~~-~~~~~~~~~~l~~ 83 (126)
+.+ ..|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6777777777765
No 145
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.73 E-value=5.2e-07 Score=45.43 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=49.9
Q ss_pred eeccCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 3 SITAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
-.+..|++++|.|.....+.| .++|...+..... .......+|.+..+...|+|.++|.+....-...+.+.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 356789999999998654555 8999764322110 01112237999999999999999999755434444554
Q ss_pred EEe
Q psy12132 81 LSG 83 (126)
Q Consensus 81 l~~ 83 (126)
+.|
T Consensus 83 V~V 85 (88)
T cd07694 83 IKV 85 (88)
T ss_pred EEE
Confidence 443
No 146
>KOG4194|consensus
Probab=98.72 E-value=5e-08 Score=64.69 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=64.5
Q ss_pred ceeccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 2 HSITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
+..+..|+++.++|.+.+.|. |++.|+|+++++....+..+.. ++..+.+......|.|.|+|...+..|.....+.
T Consensus 715 ~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~ 792 (873)
T KOG4194|consen 715 DQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHIC 792 (873)
T ss_pred ceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEeeccceeeEEE
Confidence 456788999999999998887 9999999888776544333222 2347888888899999999999999888877777
Q ss_pred EEecC
Q psy12132 81 LSGIP 85 (126)
Q Consensus 81 l~~~~ 85 (126)
+.+..
T Consensus 793 l~~~~ 797 (873)
T KOG4194|consen 793 LLVYQ 797 (873)
T ss_pred EEEee
Confidence 66543
No 147
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.72 E-value=4.4e-07 Score=48.19 Aligned_cols=70 Identities=21% Similarity=0.484 Sum_probs=49.6
Q ss_pred ceeccCCccEEEEEEee-ecCCCeeEEEECCE-----Eec--------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132 2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGT-----AIT--------------LGGRIDMHVSS--EKHSLLVRHIKDT 59 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~-----~~~--------------~~~~~~~~~~~--~~~~l~i~~~~~~ 59 (126)
.+.+.+|+++.|.|... ......+.|++... .+. ...++.+..+. ....|.|.+++..
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 35678899999999998 44556899987321 111 01233333332 3578999999999
Q ss_pred CCEEEEEEEecC
Q psy12132 60 DFGNYMCQASNN 71 (126)
Q Consensus 60 d~g~y~C~~~~~ 71 (126)
|.|.|.|.+...
T Consensus 90 DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 90 DSGTYFCQVSTS 101 (114)
T ss_dssp GEEEEEEEEEES
T ss_pred cCEEEEEEEEEC
Confidence 999999998875
No 148
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.69 E-value=1.5e-07 Score=48.63 Aligned_cols=67 Identities=12% Similarity=0.226 Sum_probs=45.1
Q ss_pred eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 70 (126)
..+..|++++|.|.... ..-.+.|+|++..............+..+.+.|..++..|.|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 35678999999998763 45679999987542110000001122345789999999999999998653
No 149
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.66 E-value=2.8e-07 Score=47.64 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCccEEEEEEeeec-C-CCeeEEEECCEEeccCCc-EEE--EecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132 7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGGR-IDM--HVSSEK---HSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~~-~~~--~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
.|+.+.|.|.+.+. | ...++|++++..+..... ... ..++.. +.|.+......+.+.|+|.+.+..
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 57899999999987 5 358999999987754332 111 122221 235555544458899999998764
No 150
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.64 E-value=6.5e-07 Score=48.07 Aligned_cols=69 Identities=14% Similarity=0.301 Sum_probs=49.1
Q ss_pred ceeccCCccEEEEEEeeec-CCCeeEEEECC--EE---ec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEE
Q psy12132 2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDG--TA---IT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNY 64 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~--~~---~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y 64 (126)
.+.+..|+++.|.|..... ....+.|++.. .. +. ...++.+.. ......|.|.+++..|+|.|
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 4567899999999998643 45579999832 11 11 124555542 23467899999999999999
Q ss_pred EEEEec
Q psy12132 65 MCQASN 70 (126)
Q Consensus 65 ~C~~~~ 70 (126)
.|.+..
T Consensus 88 ~C~~~~ 93 (116)
T cd07706 88 FCALST 93 (116)
T ss_pred EEEEEC
Confidence 998875
No 151
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.63 E-value=6.9e-07 Score=46.45 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=48.3
Q ss_pred CccEEEEEEeeecCC-CeeEEEECCE----Eec---c----------CCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132 8 DMRAEIICNVYANPP-AKVEWFRDGT----AIT---L----------GGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQA 68 (126)
Q Consensus 8 g~~~~l~C~~~~~p~-~~~~w~~~~~----~~~---~----------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~ 68 (126)
|++++|.|....... ..+.|++... .+. . ..+..+. .....++|.|.+++..|.|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998753332 2689987421 111 0 0122221 1224578999999999999999997
Q ss_pred ec-CCceeEEEEEEEe
Q psy12132 69 SN-NLGSSQQFIQLSG 83 (126)
Q Consensus 69 ~~-~~~~~~~~~~l~~ 83 (126)
.. ..|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 64 4566666655554
No 152
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.63 E-value=1.9e-06 Score=44.68 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=50.0
Q ss_pred ccEEEEEEeeecC-CCeeEEEECC----EEec--c-----------CCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132 9 MRAEIICNVYANP-PAKVEWFRDG----TAIT--L-----------GGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS 69 (126)
Q Consensus 9 ~~~~l~C~~~~~p-~~~~~w~~~~----~~~~--~-----------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~ 69 (126)
+++.|.|.....+ ...++|.|.. ..+. . ..|..+. ....+.+|.|.++...|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999986322 3379998732 1221 0 1233332 12235799999999999999999976
Q ss_pred -cCCceeEEEEEEEe
Q psy12132 70 -NNLGSSQQFIQLSG 83 (126)
Q Consensus 70 -~~~~~~~~~~~l~~ 83 (126)
...|...+...|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 46777787777764
No 153
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.62 E-value=5.7e-07 Score=46.80 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=48.5
Q ss_pred eeccCCccEEEEEEeee-cCCCeeEEEECCE-----Ee--------ccCCcEEEEec--CCeEEEEEecCCCCCCEEEEE
Q psy12132 3 SITAPDMRAEIICNVYA-NPPAKVEWFRDGT-----AI--------TLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMC 66 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~-----~~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C 66 (126)
+.+.+|++++|.|.... .....+.|++... .+ ....++.+... .....|.|.+++..|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46788999999999764 3456789987531 11 01234544322 345789999999999999999
Q ss_pred EEecC
Q psy12132 67 QASNN 71 (126)
Q Consensus 67 ~~~~~ 71 (126)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 87764
No 154
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.61 E-value=5.5e-07 Score=47.68 Aligned_cols=68 Identities=16% Similarity=0.378 Sum_probs=46.0
Q ss_pred eeccCCccEEEEEEeeecC-CCeeEEEECCEE--------e--cc------------CCcEEEE--ecCCeEEEEEecCC
Q psy12132 3 SITAPDMRAEIICNVYANP-PAKVEWFRDGTA--------I--TL------------GGRIDMH--VSSEKHSLLVRHIK 57 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~--------~--~~------------~~~~~~~--~~~~~~~l~i~~~~ 57 (126)
+.+.+|++++|.|...... ...+.|++.... + .. ..++... .......|.|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 3578899999999986533 457999984321 0 00 1244332 22234679999999
Q ss_pred CCCCEEEEEEEec
Q psy12132 58 DTDFGNYMCQASN 70 (126)
Q Consensus 58 ~~d~g~y~C~~~~ 70 (126)
.+|+|.|.|....
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999998753
No 155
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.58 E-value=1e-06 Score=47.57 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=47.5
Q ss_pred ceeccCCccEEEEEEeeecC------CCeeEEEECCE-----E-e--cc---------CCcEEEE--ecCCeEEEEEecC
Q psy12132 2 HSITAPDMRAEIICNVYANP------PAKVEWFRDGT-----A-I--TL---------GGRIDMH--VSSEKHSLLVRHI 56 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p------~~~~~w~~~~~-----~-~--~~---------~~~~~~~--~~~~~~~l~i~~~ 56 (126)
.+.+.+|++++|.|...... ...+.|++... . + .. ..++... .....+.|.|.++
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l 87 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA 87 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence 46788899999999875221 24589998531 1 1 00 1244442 1334678999999
Q ss_pred CCCCCEEEEEEEecC
Q psy12132 57 KDTDFGNYMCQASNN 71 (126)
Q Consensus 57 ~~~d~g~y~C~~~~~ 71 (126)
+..|+|.|.|.+...
T Consensus 88 ~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 88 QPEDSGKYFFRVELG 102 (119)
T ss_pred ChhhCeEEEEEEEcC
Confidence 999999999988664
No 156
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.56 E-value=9.9e-07 Score=46.47 Aligned_cols=67 Identities=18% Similarity=0.387 Sum_probs=45.7
Q ss_pred eccCCccEEEEEEeeecCCCeeEEEECCE----E---ec---c------------CCcEEEEecCCeEEEEEecCCCCCC
Q psy12132 4 ITAPDMRAEIICNVYANPPAKVEWFRDGT----A---IT---L------------GGRIDMHVSSEKHSLLVRHIKDTDF 61 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~----~---~~---~------------~~~~~~~~~~~~~~l~i~~~~~~d~ 61 (126)
.+.+|++++|.|.........+.|++... . +. . ..++..........|.|.+++..|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 36789999999998644456799998431 1 11 0 1123332333456899999999999
Q ss_pred EEEEEEEec
Q psy12132 62 GNYMCQASN 70 (126)
Q Consensus 62 g~y~C~~~~ 70 (126)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998653
No 157
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.55 E-value=2.5e-06 Score=43.07 Aligned_cols=61 Identities=13% Similarity=0.320 Sum_probs=39.6
Q ss_pred EEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCC------eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 11 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 11 ~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+.|.|.+.+. |.+.++|++++..+..... .....+. ...+.+......+...|+|.+.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 6799999764 7889999999987654321 2222211 1244454444556678999998864
No 158
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.51 E-value=2e-06 Score=43.31 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=38.4
Q ss_pred EEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCC----eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132 11 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG 73 (126)
Q Consensus 11 ~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~ 73 (126)
+.|.|.+.+. |.+.+.|++++..+...........++ ...|.+......+.+.|+|.+.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 6799999654 788999999998775322111111111 12344444444455689999988643
No 159
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.49 E-value=2.8e-06 Score=40.56 Aligned_cols=62 Identities=24% Similarity=0.500 Sum_probs=43.3
Q ss_pred EEEEEEeeecCCCeeEEEECCEEeccCCcE----EEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 11 AEIICNVYANPPAKVEWFRDGTAITLGGRI----DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+.|.|.+.+.+...+.|++++......... ..........+.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468899987677899999987654332210 01111234579999999999999999988764
No 160
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.46 E-value=5.8e-06 Score=41.74 Aligned_cols=62 Identities=16% Similarity=0.336 Sum_probs=38.3
Q ss_pred EEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEe-c-C---CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV-S-S---EKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~-~-~---~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+.|.|.+.+ .|...++|++++..+.......... . + ..+.|.+......+-..|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 678999976 5667899999998864322111111 1 1 12355555444445558999998754
No 161
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.45 E-value=3.3e-06 Score=44.00 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=44.2
Q ss_pred eccCCccEEEEEEeee-cCCCe--eEEEECCEEeccCCcEEE---EecCCeEEEEEecCCCCCCE-EEEEEEecCCc
Q psy12132 4 ITAPDMRAEIICNVYA-NPPAK--VEWFRDGTAITLGGRIDM---HVSSEKHSLLVRHIKDTDFG-NYMCQASNNLG 73 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~-~p~~~--~~w~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~ 73 (126)
.+.+|+.++|.|.+.+ .|.+. +.|++++..+.... +.. .......++.+... +.|.| .|+|.+.+...
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP-FGDNTKSPVNAPATITITVD-REDHGANFSCETELDLR 86 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce-eccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccC
Confidence 4678999999999975 45555 79999998875321 111 01112335666544 55555 89999987654
No 162
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.37 E-value=8.9e-06 Score=40.84 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=40.3
Q ss_pred EEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEe-cC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV-SS--EKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+.|.|.+.| .|.+.++|++++..+.......... .+ ..+.|.+..-..+|-..|+|.+.+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 678999864 5677999999998875432211111 11 23467775555555558999998864
No 163
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.36 E-value=5.5e-06 Score=41.26 Aligned_cols=59 Identities=20% Similarity=0.442 Sum_probs=39.5
Q ss_pred cEEEEEEeeecCCC--eeEEEECCE-----Eec-------------cCCcEEEEec--CCeEEEEEecCCCCCCEEEEEE
Q psy12132 10 RAEIICNVYANPPA--KVEWFRDGT-----AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQ 67 (126)
Q Consensus 10 ~~~l~C~~~~~p~~--~~~w~~~~~-----~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~ 67 (126)
++.|.|.+.....+ .+.|++... .+. ...++.+... .....|.|.+++..|.|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998755443 789987431 111 1234444433 4457899999999999999996
Q ss_pred E
Q psy12132 68 A 68 (126)
Q Consensus 68 ~ 68 (126)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 164
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.35 E-value=3.8e-05 Score=39.86 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=46.4
Q ss_pred ccEEEEEEeeec-CCCeeEEEECCE----Eecc-------------CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEe
Q psy12132 9 MRAEIICNVYAN-PPAKVEWFRDGT----AITL-------------GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQAS 69 (126)
Q Consensus 9 ~~~~l~C~~~~~-p~~~~~w~~~~~----~~~~-------------~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~ 69 (126)
++++|.|..... ....++|.|... .+.. ..|..+... ..+.+|.|.++...|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468999997532 244788987421 1110 123333211 134689999999999999999987
Q ss_pred c-CCceeEEEEEE
Q psy12132 70 N-NLGSSQQFIQL 81 (126)
Q Consensus 70 ~-~~~~~~~~~~l 81 (126)
. ..|...+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 46666666554
No 165
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.27 E-value=6.2e-05 Score=38.91 Aligned_cols=67 Identities=18% Similarity=0.376 Sum_probs=37.5
Q ss_pred cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCc-EEEEecC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-IDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~-~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
..++.++|.|.+.+.-++ .+.|++++..+..... .....++ .........+...+...|+|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 357889999999875433 7899999987654311 1111111 11122222233344457888777643
No 166
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.26 E-value=2.9e-05 Score=40.03 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=38.3
Q ss_pred CccEEEEEEeeecCCC--eeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 8 DMRAEIICNVYANPPA--KVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
++.+.|.|.+.|..++ .+.|.+++..+.... ......++.........+...+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999985443 889999985332211 1111122222233334444456778999887653
No 167
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.24 E-value=2e-05 Score=42.41 Aligned_cols=68 Identities=18% Similarity=0.384 Sum_probs=45.8
Q ss_pred eeccCCccEEEEEEeeecC--CCeeEEEECC--E-E--e---c-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132 3 SITAPDMRAEIICNVYANP--PAKVEWFRDG--T-A--I---T-----------LGGRIDMHVSS--EKHSLLVRHIKDT 59 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~-~--~---~-----------~~~~~~~~~~~--~~~~l~i~~~~~~ 59 (126)
+.+.+|++++|.|...... ...+.|++.. . + + . ...++...... ....|.|.+++..
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 5678899999999875432 4568998742 1 1 1 0 01344443332 2357999999999
Q ss_pred CCEEEEEEEec
Q psy12132 60 DFGNYMCQASN 70 (126)
Q Consensus 60 d~g~y~C~~~~ 70 (126)
|+|.|.|....
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999997654
No 168
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.24 E-value=8.6e-05 Score=39.59 Aligned_cols=65 Identities=14% Similarity=0.437 Sum_probs=39.4
Q ss_pred cCCccEEEEEEeeec-CC-CeeEEEECCEEeccCCcEEEEecCC------eEEEEEecCCCCCCE-EEEEEEecCC
Q psy12132 6 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFG-NYMCQASNNL 72 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g-~y~C~~~~~~ 72 (126)
..|+.++|.|.+.+. |. ..++|++||..+..... ....++. .+.|.+.. ...|.+ .|+|.+....
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 457789999999765 43 48999999988753221 1111111 12344443 334433 5999988754
No 169
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.13 E-value=8.6e-05 Score=37.82 Aligned_cols=66 Identities=15% Similarity=0.349 Sum_probs=40.3
Q ss_pred CccEEEEEEe-eecCCCeeEEEECCEEeccCC-cEEEEecCC----eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132 8 DMRAEIICNV-YANPPAKVEWFRDGTAITLGG-RIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG 73 (126)
Q Consensus 8 g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~ 73 (126)
|+.+.+.|.+ .+.|.+.+.|+.++..+.... ......... .+.|.+..-..++...++|.+.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 6789999976 577889999999886651111 111111111 13566655544556689999988653
No 170
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.12 E-value=0.00018 Score=37.13 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=37.2
Q ss_pred CCccEEEEEEeeecCCC--eeEEEECCEEeccCCc-EEEEe--cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 7 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-IDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
.|+...|.|.+.+.-++ .++|.++|..+. +.. ..... ++.........+...+...|+|.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 35567899999875443 689999998765 311 11112 222222222233445666799988764
No 171
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.08 E-value=0.00012 Score=36.09 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=36.1
Q ss_pred EEEEEEeeec-CC-CeeEEEECCEEeccCCcE-EEE--ecCC---eEEEEEecCCCCCCEEEEEEEecC
Q psy12132 11 AEIICNVYAN-PP-AKVEWFRDGTAITLGGRI-DMH--VSSE---KHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 11 ~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~-~~~--~~~~---~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
+.|.|.+.+. |. ..+.|++++..+..+... ... .++. .+.|.+......+...|+|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6799999876 33 489999999864322110 111 1221 124555444555666899988764
No 172
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.00 E-value=0.00023 Score=36.78 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=34.7
Q ss_pred CccEEEEEEeeecCC--CeeEEEECCEEeccCCcE-EE--EecCCe---EEEEEecCCCCCCEEEEEEEecC
Q psy12132 8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI-DM--HVSSEK---HSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~-~~--~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
++..+|.|.+.|.-+ ..+.|.++|..+..+... .. ..++.. ..|.+. ..+...|+|.+...
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 455799999987533 378999999876432111 11 111211 233333 23444788887764
No 173
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.00 E-value=0.00028 Score=39.10 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=38.4
Q ss_pred CCccEEEEEEeeec-CC-CeeEEEECCEEecc-----CC----cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 7 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITL-----GG----RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 7 ~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~-----~~----~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
.|+.+.|.|.+.+. |. +.+.|++++..... .. ......++. .+.|.+......+.+.|+|.+.+..
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 57789999999885 43 48999998743110 11 011111221 1345555444444558999987753
No 174
>KOG3515|consensus
Probab=97.99 E-value=4.6e-05 Score=52.40 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=63.0
Q ss_pred eccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEE
Q psy12132 4 ITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQL 81 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l 81 (126)
.+..|+++.|.|.+.++|++ .+.|++++.... .+.....+ ..|......++..+.|.|.+.|..+.. ++...+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l 92 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIAD---PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL 92 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccccC---CceeeecchhhhhhhhhhhhcccccCceecceee
Confidence 46789999999999877654 799999876544 33322222 268888888888889999999875433 334444
Q ss_pred EecCCCCeecc--CcceeCCCeeEEEEEE
Q psy12132 82 SGIPNIPVFQK--SSRRLGPDGYRLVWQV 108 (126)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 108 (126)
.+.-.+.-... .........+.+.|..
T Consensus 93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~ 121 (741)
T KOG3515|consen 93 DVDYPPACLPELGEIFQVDKGVVQIICSA 121 (741)
T ss_pred ccccCccccccccchhhhcCCeEEEEEee
Confidence 43222211111 2223345567888844
No 175
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.90 E-value=0.00031 Score=35.36 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=38.8
Q ss_pred cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEE-EE--ecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132 6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID-MH--VSSEK---HSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~-~~--~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
..++.+.|.|.+.+.-+. .+.|.+++..+....... .. .++.. +.|.+. ..+...|+|.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 347889999999865333 799999998765432211 11 12221 234444 344447999887654
No 176
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.81 E-value=0.00082 Score=34.90 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=21.0
Q ss_pred cCCccEEEEEEeeec-CCC--eeEEEECCE
Q psy12132 6 APDMRAEIICNVYAN-PPA--KVEWFRDGT 32 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~-p~~--~~~w~~~~~ 32 (126)
..++.++|.|.+.+. -++ .++|.+++.
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 357889999999887 333 689999864
No 177
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.75 E-value=0.00032 Score=36.67 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=37.3
Q ss_pred CCccEEEEEEeeec-C-CCeeEEEECCEEeccCC---cEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132 7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGG---RIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~---~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
.++.++|.|.+.+. | ...+.|+++|..+..+. ......++.. +.|.+..-.-.+...|+|.+....
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 46679999999874 3 34789999998764221 1011112221 233333322223457999887653
No 178
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.68 E-value=0.0011 Score=34.24 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=36.8
Q ss_pred CccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
.+.+.|.|.+.+.-+ ..+.|.+++..+.... ......++. .+.|.+..-.-.+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 456899999987533 4789999998753221 111111121 1234443332234457999988754
No 179
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.65 E-value=0.0011 Score=34.80 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=23.1
Q ss_pred CCccEEEEEEeeecCCC--eeEEEECCEEec
Q psy12132 7 PDMRAEIICNVYANPPA--KVEWFRDGTAIT 35 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~ 35 (126)
.++.++|.|.+.|..++ .+.|.+++..+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 46789999999875444 679999998764
No 180
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.61 E-value=0.0012 Score=34.28 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=21.7
Q ss_pred CccEEEEEEeeecCCC--eeEEEECCEEec
Q psy12132 8 DMRAEIICNVYANPPA--KVEWFRDGTAIT 35 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~ 35 (126)
+..++|.|.+.+.-++ .++|.++|..+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 4568999999875433 689999998754
No 181
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.53 E-value=0.00041 Score=33.09 Aligned_cols=53 Identities=15% Similarity=0.344 Sum_probs=33.8
Q ss_pred ccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
...|.+|+|+|.... ..+.|.+++..+..... .+...+-. .+.|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCC---CCceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 456889999997652 22999998855432211 12222333 7899999988643
No 182
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.47 E-value=0.0043 Score=33.37 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=40.4
Q ss_pred CCccEEEEEEeeecCCC--eeEEEECCEEeccCCc---EEEEec-CC---eEEEEEecCCCCC-CEEEEEEEecCCceeE
Q psy12132 7 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR---IDMHVS-SE---KHSLLVRHIKDTD-FGNYMCQASNNLGSSQ 76 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~---~~~~~~-~~---~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~ 76 (126)
.++.++|.|.+.+.-+. .+.|.+++..+..+.. .....+ +. .+.|.+...+-.+ ...|+|.+........
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 35678999999875433 7899999987653311 111111 11 1234444332223 3479999887644444
Q ss_pred EE
Q psy12132 77 QF 78 (126)
Q Consensus 77 ~~ 78 (126)
..
T Consensus 97 ~~ 98 (115)
T cd05769 97 DK 98 (115)
T ss_pred ee
Confidence 33
No 183
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.45 E-value=0.00081 Score=36.72 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=43.6
Q ss_pred ccCCccEEEEEEeeec-----CCCeeEEEECCEEecc---CCc-E--------EEE-ecCCeEEEEEecCCCCCCEEEEE
Q psy12132 5 TAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITL---GGR-I--------DMH-VSSEKHSLLVRHIKDTDFGNYMC 66 (126)
Q Consensus 5 ~~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~---~~~-~--------~~~-~~~~~~~l~i~~~~~~d~g~y~C 66 (126)
..-++++.++|.+... +...+.|..++..+-. ... . .+. -..++++|.+...+.- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3457889999998631 2336899988876421 111 1 110 0113556888775544 899999
Q ss_pred EEecCCceeEEEEEEEe
Q psy12132 67 QASNNLGSSQQFIQLSG 83 (126)
Q Consensus 67 ~~~~~~~~~~~~~~l~~ 83 (126)
.+.....+....+.|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99877666676666664
No 184
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.45 E-value=0.0021 Score=33.30 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=38.5
Q ss_pred ccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132 9 MRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79 (126)
Q Consensus 9 ~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 79 (126)
..+.+.|.+. +.|.+.++|+++..... ........++. .+.|.+.....+|-..|+|.+.+..-.....+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 3578899875 77888999998621110 00001111111 12455544444445589999998754444333
No 185
>PHA02633 hypothetical protein; Provisional
Probab=97.43 E-value=0.0011 Score=31.14 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=28.7
Q ss_pred EEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132 50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 84 (126)
Q Consensus 50 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~ 84 (126)
.|.|.++...|+|.|.|...|..-.....+.+.+.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 68899999999999999999876566666777664
No 186
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.41 E-value=0.0016 Score=31.37 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=33.9
Q ss_pred CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70 (126)
Q Consensus 8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 70 (126)
.+.+.|.|.. ..++.|++ |..+.... ...+.+.....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 4468999965 35699999 43332111 12677778888889999998766
No 187
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.35 E-value=0.003 Score=32.74 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=20.7
Q ss_pred CccEEEEEEeeecCC--CeeEEEECCEE
Q psy12132 8 DMRAEIICNVYANPP--AKVEWFRDGTA 33 (126)
Q Consensus 8 g~~~~l~C~~~~~p~--~~~~w~~~~~~ 33 (126)
++.+.|.|.+.+.-+ ..++|.++|..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 557999999987543 37899999986
No 188
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.34 E-value=0.00056 Score=41.46 Aligned_cols=48 Identities=15% Similarity=0.379 Sum_probs=38.8
Q ss_pred cCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132 20 NPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70 (126)
Q Consensus 20 ~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 70 (126)
...|.+.|.. ++..+....+..++..| .|.+.+....++|.|+|....
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence 3578899998 45566666677777666 799999999999999998764
No 189
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.26 E-value=0.007 Score=31.37 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=35.8
Q ss_pred ccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132 9 MRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLG 73 (126)
Q Consensus 9 ~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~ 73 (126)
....+.|.+ .|.|.+.|.|+++..... ........++. .+.|.+.....++-..|+|.+.+..-
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 356778998 578899999998611100 00000111111 13455544444444579999988653
No 190
>PHA02982 hypothetical protein; Provisional
Probab=97.10 E-value=0.0038 Score=36.81 Aligned_cols=70 Identities=13% Similarity=0.317 Sum_probs=47.4
Q ss_pred eeccCCccEEEEEEeee-cCCCeeEEEECC-EEec----------c--------CCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132 3 SITAPDMRAEIICNVYA-NPPAKVEWFRDG-TAIT----------L--------GGRIDMHVSSEKHSLLVRHIKDTDFG 62 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~-~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~g 62 (126)
+.+..++.+.|+|.... .-..++.|.++. ..+. . ...+..+..+..++|+|.+++....|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 45567899999998532 223367897643 2221 0 11233445566789999999999999
Q ss_pred EEEEEEecCC
Q psy12132 63 NYMCQASNNL 72 (126)
Q Consensus 63 ~y~C~~~~~~ 72 (126)
-|+|.+....
T Consensus 114 CYtc~~ks~~ 123 (251)
T PHA02982 114 CFTCEAKDAE 123 (251)
T ss_pred ceEEEEecCC
Confidence 9999998754
No 191
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.89 E-value=0.0077 Score=31.48 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.6
Q ss_pred CCccEEEEEEeeecC---CCeeEEEECCEE
Q psy12132 7 PDMRAEIICNVYANP---PAKVEWFRDGTA 33 (126)
Q Consensus 7 ~g~~~~l~C~~~~~p---~~~~~w~~~~~~ 33 (126)
.+..+.|.|.+.+.- ...+.|.+++..
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 466799999998754 237999998754
No 192
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.89 E-value=0.017 Score=30.11 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=38.4
Q ss_pred eccCCccEEEEEEeeec-CC--CeeEEEECCEEeccCCcEEE-----EecCCeEEEEEecCCCCCCE-EEEEEEecC
Q psy12132 4 ITAPDMRAEIICNVYAN-PP--AKVEWFRDGTAITLGGRIDM-----HVSSEKHSLLVRHIKDTDFG-NYMCQASNN 71 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~-p~--~~~~w~~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~ 71 (126)
...+|..+++.|.+.+. |. ..+.|++....+.... +.- ........+.+... +.|.| +|.|.+.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 34679999999999643 33 3688988665443221 110 00111124555443 66766 899987753
No 193
>PHA03042 CD47-like protein; Provisional
Probab=96.83 E-value=0.026 Score=34.75 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=42.4
Q ss_pred cCCccEEEEEEeeec-----CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132 6 APDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80 (126)
Q Consensus 6 ~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 80 (126)
.-.+++.++|.+... ...++.|..++..+-..... ..++|.+...+ .-.|+|+|.+.+..-+..+...
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccEEEE
Confidence 346789999998632 24579999988765321111 11356654443 4489999998864433444444
Q ss_pred EE
Q psy12132 81 LS 82 (126)
Q Consensus 81 l~ 82 (126)
+.
T Consensus 102 Lk 103 (286)
T PHA03042 102 LQ 103 (286)
T ss_pred EE
Confidence 44
No 194
>KOG4597|consensus
Probab=96.66 E-value=0.0042 Score=40.91 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=57.4
Q ss_pred eccCCccEEEEEEeeecCCCeeEEEE---CCEEe--ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132 4 ITAPDMRAEIICNVYANPPAKVEWFR---DGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~p~~~~~w~~---~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 78 (126)
.+-++++..+.|.+.|.+.+.|.|.+ ++..+ .....+.-..-.....|.|-+....|.|.|+|.+.+..|...+.
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rd 286 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRD 286 (560)
T ss_pred hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecc
Confidence 45567889999999999999999965 22221 11111110111124579999999999999999999999988888
Q ss_pred EEEEec
Q psy12132 79 IQLSGI 84 (126)
Q Consensus 79 ~~l~~~ 84 (126)
+.+.+.
T Consensus 287 v~c~s~ 292 (560)
T KOG4597|consen 287 VPCSSV 292 (560)
T ss_pred ceeeee
Confidence 877653
No 195
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.64 E-value=0.032 Score=29.06 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=37.5
Q ss_pred eeccCCccEEE-EEEe-eecCCCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132 3 SITAPDMRAEI-ICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 3 ~~~~~g~~~~l-~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+.+.+|+.+.+ .|.+ .+.|.+.++|+.+..... ........++. .+.+.+......|-..++|.+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 34556777777 7876 577888999997532211 01111111121 1244444443344447999988753
No 196
>KOG1480|consensus
Probab=96.58 E-value=0.00047 Score=47.60 Aligned_cols=69 Identities=23% Similarity=0.499 Sum_probs=50.7
Q ss_pred eccCCccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132 4 ITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75 (126)
Q Consensus 4 ~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 75 (126)
.+..+..+++.|.. .+.|...++|++++..+..........+ ..+.+..+...|.|+|+|.+.|..+..
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhcccceeeeehhhccc
Confidence 34556677888875 5677778999999887776544433333 368888999999999999999865533
No 197
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.42 E-value=0.08 Score=35.43 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=53.3
Q ss_pred eEEEEEecCCCCCCEEEEEEEec---CCceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132 48 KHSLLVRHIKDTDFGNYMCQASN---NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER 124 (126)
Q Consensus 48 ~~~l~i~~~~~~d~g~y~C~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 124 (126)
...|.|..+...+.|.|+-...+ .....+..+.+.....|.+.......+.|+.+.-+|....+.|.-+-.+.|.+.
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 35799999999999999977653 223344555555544444444445567888999999998886666666666654
No 198
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.42 E-value=0.054 Score=29.12 Aligned_cols=66 Identities=9% Similarity=0.257 Sum_probs=42.0
Q ss_pred eeccCCccEEEEEEeeecCCC---eeEEEEC--CE-E-ec-----------cCCcEEEEe--cCCeEEEEEecCCCCCCE
Q psy12132 3 SITAPDMRAEIICNVYANPPA---KVEWFRD--GT-A-IT-----------LGGRIDMHV--SSEKHSLLVRHIKDTDFG 62 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~--~~-~-~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g 62 (126)
..+.+|+.+.|.|.+.+.... .+.|+|. +. + +. ...++.... ....-.|.+.+++..|.+
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 456788899999999654433 5778873 21 1 00 112332222 222357999999999999
Q ss_pred EEEEEE
Q psy12132 63 NYMCQA 68 (126)
Q Consensus 63 ~y~C~~ 68 (126)
.|.|..
T Consensus 88 ~Y~Ca~ 93 (115)
T cd05721 88 IYFCKI 93 (115)
T ss_pred EEEEEe
Confidence 999964
No 199
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.94 E-value=0.097 Score=27.67 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEEEe
Q psy12132 48 KHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLSG 83 (126)
Q Consensus 48 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~~ 83 (126)
+.+|.|..++..|+|.|...+.+..|.. .+.+.+.+
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4589999999999999999999888766 33444443
No 200
>KOG3515|consensus
Probab=95.74 E-value=0.041 Score=38.73 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=57.4
Q ss_pred ecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEecCCCCeecc--Ccc
Q psy12132 19 ANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK--SSR 95 (126)
Q Consensus 19 ~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~ 95 (126)
+.| .+++.|.+++..+.....-.+............++.+.|.|.|.|.+.+..|.....+.+.+...++.... +..
T Consensus 427 ~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~ 506 (741)
T KOG3515|consen 427 GAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVE 506 (741)
T ss_pred CCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccc
Confidence 444 45789988876665443322221111223446668899999999999999888888877665544444333 233
Q ss_pred eeCCCeeEEEEEEccC
Q psy12132 96 RLGPDGYRLVWQVDTY 111 (126)
Q Consensus 96 ~~~~~~~~l~~~~~~~ 111 (126)
...++++...|.....
T Consensus 507 ~~~~ns~~~~~~q~~~ 522 (741)
T KOG3515|consen 507 GATGNSVDGECMQDEQ 522 (741)
T ss_pred cCCCCcccceeecccc
Confidence 3445566777766443
No 201
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.25 E-value=0.52 Score=31.29 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=50.5
Q ss_pred EEEEecCCCCCCEEEEEEEecCCc--eeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132 50 SLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER 124 (126)
Q Consensus 50 ~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 124 (126)
.|.|..+.....|.|+-...+..+ .....+.+.....|.+.......+.++.+.-+|....+.|.-+-.+.|.+.
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 389999999999999998765433 334455555443444444444457788889999998776655555666543
No 202
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.13 E-value=0.2 Score=25.72 Aligned_cols=65 Identities=14% Similarity=0.316 Sum_probs=39.4
Q ss_pred eeccCCccEEEEEEeeec-----CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132 3 SITAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 69 (126)
..+..|++++..|..... ....+.|..++..+. .+++....++ .+..++.+.+....-.|.|...
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVINDT-VSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEESTT-EEEEEESS--SSEEEEEEEEEC
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcceeCCe-EEEEEEccCCCCCceEEEEEEc
Confidence 457789999999998522 345789988887554 3444444433 3567777776655556767643
No 203
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.09 E-value=0.57 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=27.9
Q ss_pred EEEEEecCCCCCCEEEEEEEec-CCceeEEEEEEEecC
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLSGIP 85 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~~~~ 85 (126)
..+.+.++...|.|.|+|.... ..-..++.+.+.+.|
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmP 118 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAP 118 (500)
T ss_pred eEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEcc
Confidence 4677888999999999998774 444557777777653
No 204
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.99 E-value=0.5 Score=31.63 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=50.5
Q ss_pred EEEEEecCCCCCCEEEEEEEecCCc--eeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER 124 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 124 (126)
..|.|..+.....|.|+-...+..+ .....+.+.....|.+.......+.++.+..+|....+.|.-.-.+.|.+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4599999999999999977654333 334444444333444444444457888899999998876666666666553
No 205
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.16 E-value=0.38 Score=30.98 Aligned_cols=21 Identities=14% Similarity=0.680 Sum_probs=16.9
Q ss_pred cEEEEEEeeecCCC--eeEEEEC
Q psy12132 10 RAEIICNVYANPPA--KVEWFRD 30 (126)
Q Consensus 10 ~~~l~C~~~~~p~~--~~~w~~~ 30 (126)
.++|.|.+.|.-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999876544 6789998
No 206
>PHA03271 envelope glycoprotein C; Provisional
Probab=93.95 E-value=1.2 Score=29.65 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=47.5
Q ss_pred eEEEEEecCCCCCCEEEEEEEecC--CceeEEEEEEEecCCCC-eeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132 48 KHSLLVRHIKDTDFGNYMCQASNN--LGSSQQFIQLSGIPNIP-VFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER 124 (126)
Q Consensus 48 ~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 124 (126)
+..+.|.++...++|.|.-...+. .....+.+.+.+...+| +.......+.++.+..+|....+.|.-+-++.|.+.
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 467999999999999553333321 12223344444444444 444444456788889999998876666566666653
No 207
>PHA03052 Hypothetical protein; Provisional
Probab=93.22 E-value=0.41 Score=23.09 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=24.4
Q ss_pred ceeccCCccEEEEEEeeecC---CCeeEEEECCEEe
Q psy12132 2 HSITAPDMRAEIICNVYANP---PAKVEWFRDGTAI 34 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~ 34 (126)
.+.+..|.++++.|.+.-.+ .+.+.|..|+..+
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 35678899999999986333 3357888888766
No 208
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=91.86 E-value=0.65 Score=24.26 Aligned_cols=30 Identities=3% Similarity=-0.004 Sum_probs=20.9
Q ss_pred cceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132 94 SRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123 (126)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~ 123 (126)
.....++.+.|.|...+.++.....+.|++
T Consensus 11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~ 40 (98)
T cd05898 11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKE 40 (98)
T ss_pred EEEeCCCcEEEEEEEccCCCCcEEEEEEcc
Confidence 334578889999999877776655555553
No 209
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=91.79 E-value=0.85 Score=22.31 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=23.2
Q ss_pred eCCCeeEEEEEEc--cCCcceeEEEEEEEec
Q psy12132 97 LGPDGYRLVWQVD--TYSAIIQYLLKFRERE 125 (126)
Q Consensus 97 ~~~~~~~l~~~~~--~~~~~~~~~~~~r~~~ 125 (126)
...+.+.|+|... ....+..|.+.|+...
T Consensus 11 ~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~ 41 (85)
T PF00041_consen 11 ISPTSVTVSWKPPSSGNGPITGYRVEYRSVN 41 (85)
T ss_dssp ECSSEEEEEEEESSSTSSSESEEEEEEEETT
T ss_pred CCCCEEEEEEECCCCCCCCeeEEEEEEEecc
Confidence 3677899999996 3678889999998754
No 210
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.29 E-value=1.7 Score=21.78 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=16.8
Q ss_pred EEEEecCCCCCCEEEEEEE-ecCC
Q psy12132 50 SLLVRHIKDTDFGNYMCQA-SNNL 72 (126)
Q Consensus 50 ~l~i~~~~~~d~g~y~C~~-~~~~ 72 (126)
..........|.|.+.|.+ .+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTT
T ss_pred EEEEecCCCCCCEEEEEEEcCCce
Confidence 3455566779999999999 4443
No 211
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=86.80 E-value=2.4 Score=28.19 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=44.6
Q ss_pred eeccCCccEEEEEEeee--cC-CCeeEEEECCEEec-----------------cCCcEEEE------ecCCeEEEEEecC
Q psy12132 3 SITAPDMRAEIICNVYA--NP-PAKVEWFRDGTAIT-----------------LGGRIDMH------VSSEKHSLLVRHI 56 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~--~p-~~~~~w~~~~~~~~-----------------~~~~~~~~------~~~~~~~l~i~~~ 56 (126)
+.+..|.++.+.|...- +- ...+.|+.-+-++. ....+.+. .+-..++|+|..+
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 34556999999998853 22 23578975432221 11222222 1223568999999
Q ss_pred CCCCCEEEEEEEecC
Q psy12132 57 KDTDFGNYMCQASNN 71 (126)
Q Consensus 57 ~~~d~g~y~C~~~~~ 71 (126)
+....|-|+|.+...
T Consensus 354 ~I~N~GCY~~~a~~g 368 (500)
T PHA02914 354 HINNAGCYEAQAFMG 368 (500)
T ss_pred EEEcCCceEEEEecC
Confidence 999999999998864
No 212
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=85.14 E-value=3.6 Score=21.65 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=20.3
Q ss_pred CeeccCcceeCCCeeEEEEEEccCCcceeEEEEE
Q psy12132 88 PVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKF 121 (126)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (126)
|.+..+.....+..++|+|.+.+..|.....+.|
T Consensus 4 p~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~v~L 37 (99)
T cd07689 4 PEILLSGPLEEGKPVTVKCEVPDVYPFDRLEIEL 37 (99)
T ss_pred ccCcccCcccCCceEEEEEEecCcccCCceEEEE
Confidence 3333333345778889999887766654444443
No 213
>PHA03112 IL-18 binding protein; Provisional
Probab=80.69 E-value=8.1 Score=21.80 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=20.2
Q ss_pred eccCCccEEEEEEeeec-CC-CeeEEEECC
Q psy12132 4 ITAPDMRAEIICNVYAN-PP-AKVEWFRDG 31 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~-p~-~~~~w~~~~ 31 (126)
....++++.|.|...+. |. ..+.|..++
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 44568899999998754 43 467898654
No 214
>PHA03269 envelope glycoprotein C; Provisional
Probab=80.52 E-value=16 Score=25.24 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=24.8
Q ss_pred eccCCccEEEEEEeeecCCC---eeEEEECCEEec
Q psy12132 4 ITAPDMRAEIICNVYANPPA---KVEWFRDGTAIT 35 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~~ 35 (126)
.++.|++..-.|.+..+-++ .+.|+.++..+.
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence 46779999999999755444 689999987765
No 215
>PHA03240 envelope glycoprotein M; Provisional
Probab=79.33 E-value=4.8 Score=24.38 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=37.4
Q ss_pred ceeccCCccEEEEEEeeecCCCeeEEEECC-----------EEec---c--CC----------cEEEEecCCeEEEEEec
Q psy12132 2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----------TAIT---L--GG----------RIDMHVSSEKHSLLVRH 55 (126)
Q Consensus 2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----------~~~~---~--~~----------~~~~~~~~~~~~l~i~~ 55 (126)
.+.+.+|++++|.-.-.-.|.-.+.|++.. .++- . .+ ...+.-...+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 356778888888533222355689998721 1110 0 00 00111222466899999
Q ss_pred CCCCCCEEEE
Q psy12132 56 IKDTDFGNYM 65 (126)
Q Consensus 56 ~~~~d~g~y~ 65 (126)
++..|.|+|.
T Consensus 112 vn~sd~~nYc 121 (258)
T PHA03240 112 LNLSDAGEYC 121 (258)
T ss_pred EeecCcchhh
Confidence 9999999995
No 216
>PHA03273 envelope glycoprotein C; Provisional
Probab=75.97 E-value=23 Score=24.37 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=39.1
Q ss_pred eccCCccEEEEEEeeecCCC---eeEEEECCEEeccCC----cEEEEecCC---eEEEEEecCCC-CCCEEEEEEEe
Q psy12132 4 ITAPDMRAEIICNVYANPPA---KVEWFRDGTAITLGG----RIDMHVSSE---KHSLLVRHIKD-TDFGNYMCQAS 69 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~~~~~----~~~~~~~~~---~~~l~i~~~~~-~d~g~y~C~~~ 69 (126)
.++.|++..-.|.+..+-++ .+.|+.++..+.... ......++. .+++.+..... ..--+.+|.+.
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 46779999999998755444 689999998876221 122222222 23454544333 22336789765
No 217
>PHA03282 envelope glycoprotein E; Provisional
Probab=74.63 E-value=11 Score=25.81 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=25.1
Q ss_pred EEEEEecCCCCCCEEEEEEEecCC--ceeEEEEEEEe
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNNL--GSSQQFIQLSG 83 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~~--~~~~~~~~l~~ 83 (126)
.++.|.++...|+|.|+..+.... ..+.+.+.+.|
T Consensus 124 ~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 124 GTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred ceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 479999999999999999875322 23455555554
No 218
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=73.44 E-value=11 Score=19.74 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=15.1
Q ss_pred cEEEEEE-eeecCCCeeEEEE
Q psy12132 10 RAEIICN-VYANPPAKVEWFR 29 (126)
Q Consensus 10 ~~~l~C~-~~~~p~~~~~w~~ 29 (126)
.+.-.|. +.|.|++.+.|.-
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDT 42 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEc
Confidence 3555788 5788899999964
No 219
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=72.11 E-value=11 Score=19.05 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=32.9
Q ss_pred cEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76 (126)
Q Consensus 10 ~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 76 (126)
...|.+.+.+. ...+.|+.++..+....... .+. +.....|.|+..+.+..|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~--------~~~---~~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH--------QLF---WQPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC--------eEE---eCCCCCeeEEEEEEcCCCCEE
Confidence 45555666655 55899999998874322111 121 123467888888777666443
No 220
>PHA03270 envelope glycoprotein C; Provisional
Probab=69.84 E-value=33 Score=23.48 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=24.9
Q ss_pred eccCCccEEEEEEeeecCCC---eeEEEECCEEec
Q psy12132 4 ITAPDMRAEIICNVYANPPA---KVEWFRDGTAIT 35 (126)
Q Consensus 4 ~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~~ 35 (126)
.++.|++..-.|.+..+-++ .+.|+.++..+.
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 35679999999998755444 689999998764
No 221
>KOG0613|consensus
Probab=62.96 E-value=2.7 Score=31.92 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=31.4
Q ss_pred eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132 18 YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68 (126)
Q Consensus 18 ~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 68 (126)
.|.|.+...|+..+..+..+....+..-.....+.+..+-+.+.|.|.-..
T Consensus 214 ~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~ 264 (1205)
T KOG0613|consen 214 AGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHI 264 (1205)
T ss_pred cCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHH
Confidence 368888999999888877665554443333345555555555555554333
No 222
>KOG0196|consensus
Probab=62.72 E-value=65 Score=24.36 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.9
Q ss_pred eeccCcceeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132 89 VFQKSSRRLGPDGYRLVWQV--DTYSAIIQYLLKFRER 124 (126)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~ 124 (126)
+..........+++.|+|.. .....++.|.+.|+.+
T Consensus 446 V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek 483 (996)
T KOG0196|consen 446 VSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEK 483 (996)
T ss_pred cceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeec
Confidence 33333445567889999977 3446689999999986
No 223
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=56.62 E-value=38 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.9
Q ss_pred EEEEEecCCCCCCEEEEEEEecC
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..|.|.+....|+|.|...+.-.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEEC
Confidence 36889999999999998877643
No 224
>PHA03283 envelope glycoprotein E; Provisional
Probab=56.26 E-value=69 Score=22.62 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=28.1
Q ss_pred EEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 84 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~ 84 (126)
..+.|.++...+.|.|+....+..+.....+.+.+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk 169 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVK 169 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEec
Confidence 469999999999999999988766655555566654
No 225
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=56.11 E-value=23 Score=17.00 Aligned_cols=21 Identities=14% Similarity=0.563 Sum_probs=13.3
Q ss_pred ccCCccEEEEEEeeecCCCeeEEEE
Q psy12132 5 TAPDMRAEIICNVYANPPAKVEWFR 29 (126)
Q Consensus 5 ~~~g~~~~l~C~~~~~p~~~~~w~~ 29 (126)
+..|++++|. |.+...+.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 3456777663 44445799984
No 226
>PHA03189 UL14 tegument protein; Provisional
Probab=52.28 E-value=64 Score=21.08 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=15.6
Q ss_pred EEEEecCCCCCCEEEEEEEecCC
Q psy12132 50 SLLVRHIKDTDFGNYMCQASNNL 72 (126)
Q Consensus 50 ~l~i~~~~~~d~g~y~C~~~~~~ 72 (126)
+|++ ++..+..|.|.|...|..
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEE-EEEecccceEEEEecccc
Confidence 4444 344577899999998864
No 227
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=41.49 E-value=55 Score=17.17 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.2
Q ss_pred CCeeEEEEEE-ccCCcceeEEEEEE
Q psy12132 99 PDGYRLVWQV-DTYSAIIQYLLKFR 122 (126)
Q Consensus 99 ~~~~~l~~~~-~~~~~~~~~~~~~r 122 (126)
.....|+|.+ .+.++-..|.++|+
T Consensus 34 nf~~iL~W~~~~~~~~~~~ytVq~~ 58 (107)
T PF01108_consen 34 NFKHILRWDPGPGSPPNVTYTVQYK 58 (107)
T ss_dssp TTEEEEEEEESTTSSSTEEEEEEEE
T ss_pred CCceEEEeCCCCCCCCCeEEEEEEE
Confidence 4468999999 55567778999998
No 228
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.66 E-value=97 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEEecCCCCCCEEEEEEEecC
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..|.|.+....|+|.|...+.-.
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ld 150 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLD 150 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeC
Confidence 47999999999999999988754
No 229
>PHA03291 envelope glycoprotein I; Provisional
Probab=39.13 E-value=1.2e+02 Score=20.39 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=21.7
Q ss_pred EEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNNLGSS 75 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~~~~~ 75 (126)
..|.+.+....|+|.|...+.-.....
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~ 155 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATN 155 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcc
Confidence 478999999999999999887553333
No 230
>PHA03289 envelope glycoprotein I; Provisional
Probab=38.60 E-value=1.1e+02 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=19.8
Q ss_pred EEEEEecCCCCCCEEEEEEEecC
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..|.|.+....|+|.|...+.-.
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeC
Confidence 47899999999999999988754
No 231
>KOG1026|consensus
Probab=37.06 E-value=83 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.1
Q ss_pred ccCCccEEEEEEeeecCCCeeEEEECCEE
Q psy12132 5 TAPDMRAEIICNVYANPPAKVEWFRDGTA 33 (126)
Q Consensus 5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~ 33 (126)
+..+..+++.|...+.|.|.+.|+.++..
T Consensus 204 v~~~~~~~~~c~~~~~~vp~~~~~~~~~~ 232 (774)
T KOG1026|consen 204 VEEGSSITLKCSQAGIPVPCHYWFPNCLA 232 (774)
T ss_pred hcccchheeeeecccCCCcceeeeccccc
Confidence 45678899999999999999999876543
No 232
>PHA03290 envelope glycoprotein I; Provisional
Probab=35.95 E-value=1.3e+02 Score=19.99 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.9
Q ss_pred EEEEEecCCCCCCEEEEEEEecC
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..|.|.+....|+|.|..++.-.
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeC
Confidence 47999999999999999987743
No 233
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=34.91 E-value=39 Score=15.52 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=11.8
Q ss_pred CCCCCEEEEEEEecCCce
Q psy12132 57 KDTDFGNYMCQASNNLGS 74 (126)
Q Consensus 57 ~~~d~g~y~C~~~~~~~~ 74 (126)
..+.+..+.|.+.|..|.
T Consensus 6 lkdssnsflctvqnkng~ 23 (65)
T PF13220_consen 6 LKDSSNSFLCTVQNKNGD 23 (65)
T ss_pred eecCCCceEEEEecccHh
Confidence 344556788988886553
No 234
>KOG3611|consensus
Probab=33.47 E-value=98 Score=23.08 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=33.0
Q ss_pred EEEEEEeeecCCCeeEEEEC--C----EEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132 11 AEIICNVYANPPAKVEWFRD--G----TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71 (126)
Q Consensus 11 ~~l~C~~~~~p~~~~~w~~~--~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 71 (126)
..|.|...+.- ..+.|+.. + ..+...........+ .+.+..++..|.|.|.|.+...
T Consensus 572 ~~l~c~~~~~~-a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G---~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 572 EVLRCVPSSNQ-APVVWYHQSTKDGRKEEVRQRDVVSRTDEG---GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred ceeeccccccc-cceeeEeeccCccccceeccCcceeecccC---ceeEEEEeeccCcccccccccC
Confidence 56677665433 33778632 1 122222332222222 4778888999999999987754
No 235
>KOG0613|consensus
Probab=30.09 E-value=50 Score=25.89 Aligned_cols=75 Identities=8% Similarity=-0.045 Sum_probs=49.0
Q ss_pred eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132 3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 77 (126)
+.+..+..+.+.|...+.+.|. +.|+++........ .+.+........+.+..+...+.+.|.|.+.|..|....
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 4456677789999998888875 88987654433221 111111222235677777788888999999998775543
No 236
>PHA03286 envelope glycoprotein E; Provisional
Probab=30.06 E-value=1.8e+02 Score=20.33 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=26.4
Q ss_pred EEEEEecCCCCCCEEEEEEEecCCceeE-EEEEEEe
Q psy12132 49 HSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLSG 83 (126)
Q Consensus 49 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~~ 83 (126)
..|.|.++...+.|.|+....+..+... ..+.+.+
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 4699999999999999999887755443 3444455
No 237
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.77 E-value=78 Score=14.81 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=12.7
Q ss_pred CEEEEEEEecCCceeEE
Q psy12132 61 FGNYMCQASNNLGSSQQ 77 (126)
Q Consensus 61 ~g~y~C~~~~~~~~~~~ 77 (126)
.|+|.|.-.+..|..+.
T Consensus 28 ~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 28 DGMYECRWFDGYGVKRE 44 (60)
T ss_pred CCeEEEEEecCCCcccc
Confidence 39999998887764443
No 238
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=27.70 E-value=78 Score=14.78 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=12.6
Q ss_pred CCeeEEEEEEccC--CcceeEEEEEEE
Q psy12132 99 PDGYRLVWQVDTY--SAIIQYLLKFRE 123 (126)
Q Consensus 99 ~~~~~l~~~~~~~--~~~~~~~~~~r~ 123 (126)
...+.++|..... .....|.+.|+.
T Consensus 14 ~~~~~v~W~~~~~~~~~~~~y~v~~~~ 40 (93)
T cd00063 14 STSVTLSWTPPEDDGGPITGYVVEYRE 40 (93)
T ss_pred CCEEEEEECCCCCCCCcceeEEEEEee
Confidence 3456666655322 234456665554
No 239
>KOG4367|consensus
Probab=25.67 E-value=1.6e+02 Score=20.49 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCCeeccCcceeCCCeeEEEEEE--ccCCcceeEEEEEEE
Q psy12132 85 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSAIIQYLLKFRE 123 (126)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~r~ 123 (126)
+..|++....-....++++|+|.. .+..+..+|.++...
T Consensus 438 patpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~ 478 (699)
T KOG4367|consen 438 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDD 478 (699)
T ss_pred CCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeec
Confidence 344455444555678889999984 445667778777654
No 240
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=20.55 E-value=1.8e+02 Score=16.52 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=15.3
Q ss_pred CCCeeEEEEEE--ccCCcceeEEEEEEEecC
Q psy12132 98 GPDGYRLVWQV--DTYSAIIQYLLKFREREG 126 (126)
Q Consensus 98 ~~~~~~l~~~~--~~~~~~~~~~~~~r~~~g 126 (126)
.+..+.+.|+. .|...-..|.+.|-+.+|
T Consensus 46 ~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dG 76 (137)
T PF12988_consen 46 KGETVEIRCELKREGNYADTRYTIRYFQPDG 76 (137)
T ss_dssp TTEEEEEEEEEEESS--SS---EEEEE-SSS
T ss_pred CCCEEEEEEEEecCceecccEEEEEEEeecC
Confidence 45566666665 666556678888877765
Done!