RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12132
(126 letters)
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 81.4 bits (201), Expect = 2e-20
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDF 61
T + I C V+A P A + WFRDG + I ++ + L V + DF
Sbjct: 29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 62 GNYMCQASNNLGSSQQFIQLS-----GIPNIPVFQKSSRRLGPDGYRLVW---QVDTYSA 113
GNY C A N +G L P+I + S ++ + +
Sbjct: 89 GNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVP 143
Query: 114 IIQYLLKFRE 123
I++Y ++R
Sbjct: 144 ILKYKAEWRA 153
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 72.8 bits (179), Expect = 3e-18
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ AE+ C V PP V W + G + R+ +H LL+ T
Sbjct: 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 79
Query: 60 DFGNYMCQASNNLGSSQ 76
D G Y+C+A N G +
Sbjct: 80 DAGVYVCRARNAAGEAY 96
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 77.2 bits (190), Expect = 7e-18
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
T + C + PP +V W +D + G + + + S+ + ++ D G Y
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Query: 65 MCQASNNLGSSQQFIQLS 82
C+ASN++GS ++
Sbjct: 456 QCKASNDVGSDTCVGSIT 473
Score = 71.4 bits (175), Expect = 8e-16
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
A + C V P ++ W+++ T + M + SL++ + +D G
Sbjct: 16 EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGE 75
Query: 64 YMCQASNNLG--SSQQFIQLSGIPNIPVFQKS 93
Y C+A N++G +S + + P F +
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARK 107
Score = 69.8 bits (171), Expect = 2e-15
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C + + P +V W++DG + + +L + + G Y C ASN
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 71 NLGSSQQFIQLS--GIPNIPVFQKSSR 95
LG++ +L+ P F
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPV 205
Score = 68.7 bits (168), Expect = 7e-15
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C+V P K+ W +D I GG M + +L V + D G Y C ASN
Sbjct: 215 GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274
Query: 71 NLGSSQQFIQLS 82
G QL
Sbjct: 275 VAGKDSCSAQLG 286
Score = 67.5 bits (165), Expect = 2e-14
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
I D C + +P KV W++D T I + M L + ++ D G+
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 64 YMCQASNNLGSSQQFIQLSGIPNIPVFQK 92
Y C+A N GS+ L + PVF+K
Sbjct: 362 YTCEAHNAAGSASSSTSLK-VKEPPVFRK 389
Score = 64.1 bits (156), Expect = 3e-13
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
++ + P V WF+D I I + S +L + + G Y CQ
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552
Query: 68 ASNNLGSSQQFIQLS 82
N G+ + F LS
Sbjct: 553 IKNEAGTQECFATLS 567
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 75.2 bits (185), Expect = 1e-17
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
H + + C + PP +V W +D + G + + + S+ + ++
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D G Y C+ASN++GS ++
Sbjct: 259 DIGEYQCKASNDVGSYTCVGSIT 281
Score = 72.5 bits (178), Expect = 1e-16
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C + +P KV W++D T I + M L + ++ D G+Y C+A
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
Query: 70 NNLGSSQQFIQLS 82
N GS+ L
Sbjct: 176 NAAGSASSSTSLK 188
Score = 68.2 bits (167), Expect = 5e-15
Identities = 23/77 (29%), Positives = 29/77 (37%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
A C+V P K+ W +D I GG M + +L V + D G Y
Sbjct: 18 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 66 CQASNNLGSSQQFIQLS 82
C ASN G QL
Sbjct: 78 CYASNVAGKDSCSAQLG 94
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 73.3 bits (180), Expect = 2e-17
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 3 SITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
+ TA C +P + WFR+G I + + L VR+I ++D
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDG 164
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
G Y+C+A+N G ++ L
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQ 185
Score = 57.1 bits (138), Expect = 2e-11
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
AE++C V ++P V W +T + + ++L + +I +D G Y C+
Sbjct: 20 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 78
Query: 71 NLGSSQQF 78
F
Sbjct: 79 EARGEIDF 86
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 75.2 bits (184), Expect = 3e-17
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
E+ C NPP ++ WF+D + I + +L +R ++ D G Y CQA
Sbjct: 682 ESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQA 739
Query: 69 SNNLGSSQQFIQLS--GIPNIPVFQK 92
+ LG ++ G ++
Sbjct: 740 CSVLGCAKVEAFFIIEGAQEKTNLER 765
Score = 62.1 bits (150), Expect = 1e-12
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R I PP +++W+++G + I H L + + + D GNY +
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-----KAGHVLTIMEVSERDTGNYTVILT 401
Query: 70 NNLGSSQQFIQLS 82
N + +Q +S
Sbjct: 402 NPISKEKQSHVVS 414
Score = 50.5 bits (120), Expect = 2e-08
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 20/92 (21%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI--------------------TLGGRIDMHVSSEKHS 50
+ C + + W++ G L + + +++
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 51 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ +++ D G+Y+C A + + +
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 47.4 bits (112), Expect = 2e-07
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 11 AEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHS--------LLVRHIKDTD 60
+ C ++ W + ++ + ++ S L + + +D
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSD 301
Query: 61 FGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSR 95
G Y C AS+ L + + + P +
Sbjct: 302 QGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Score = 45.1 bits (106), Expect = 1e-06
Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNN 71
+ W + + + L + + D G Y C
Sbjct: 49 LQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRET 108
Query: 72 LGSSQQFIQLSGIPNIPVFQKSSR 95
+S ++ + + + S +
Sbjct: 109 DLASVIYVYVQDYRSPFIASVSDQ 132
Score = 43.6 bits (102), Expect = 4e-06
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 7/91 (7%)
Query: 10 RAEIICNVYANPPAKV--EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
I C + + + + G RI K + + G C+
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRI---SWDSKKGFTIPSYMISYAGMVFCE 201
Query: 68 ASNNLGS--SQQFIQLSGIPNIPVFQKSSRR 96
A N S S +I + I S
Sbjct: 202 AKINDESYQSIMYIVVVVGYRIYDVVLSPSH 232
Score = 41.7 bits (97), Expect = 2e-05
Identities = 14/107 (13%), Positives = 24/107 (22%), Gaps = 34/107 (31%)
Query: 10 RAEIICNVYANP-PAKVEWFRDGTAITL-------------------------------- 36
+ C VYA P P + W+
Sbjct: 440 TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEV 499
Query: 37 -GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ + K + Y C+A N +G ++ I
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546
Score = 27.0 bits (59), Expect = 2.1
Identities = 4/38 (10%), Positives = 9/38 (23%), Gaps = 4/38 (10%)
Query: 60 DFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 97
++C + + L +P L
Sbjct: 8 AVALWLCVETRAASVGLPSVSLD----LPRLSIQKDIL 41
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 70.1 bits (172), Expect = 4e-17
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
S+T + A C+ P V W R G ++ R + + K + + ++ +
Sbjct: 21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 80
Query: 60 DFGNYMCQASNNLGSSQQFIQL 81
D GNY N+ G + L
Sbjct: 81 DEGNYSVVVENSEGKQEAEFTL 102
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 74.0 bits (182), Expect = 4e-17
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQAS 69
I P + W + I G + V+ SL+ ++ D G Y+ A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 70 NNLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVWQ---VDTYSAIIQYLLK 120
N G Q+ ++L +P+ P V S + L W D S I Y+++
Sbjct: 182 NRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSV-----NLTWTEPASDGGSKITNYIVE 236
Query: 121 FRE 123
Sbjct: 237 KCA 239
Score = 62.1 bits (151), Expect = 1e-12
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDF 61
A ++C V +P V+W+R G I G + + H L++ + D D
Sbjct: 15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
Y +A+N GS L
Sbjct: 75 TVYQVRATNQGGSVSGTASLE 95
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 72.4 bits (178), Expect = 4e-17
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ S+T + + V P V+++RDG I + + +SLL+
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE 169
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D G Y A+N++G + +L
Sbjct: 170 DSGTYSVNATNSVGRATSTAELL 192
Score = 65.9 bits (161), Expect = 1e-14
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 67
A ++ P +V WFRDG I+ + +S + L + + + G Y +
Sbjct: 22 TATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK 81
Query: 68 ASNNLGSSQQFIQLS--GIPNIPVFQK 92
A+N G + +L P F +
Sbjct: 82 ATNGSGQATSTAELLVKAETAPPNFVQ 108
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 71.8 bits (176), Expect = 8e-17
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 11 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
++ V Y KV W +G+AI R+ V+ E+ L + D G Y+ +
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 70 NNLGSSQQFIQLSGIPNIPVFQKSSRR 96
+ Q+ + LSG + + R
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRL 106
Score = 66.0 bits (161), Expect = 2e-14
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYMCQAS 69
+ CNV+ +PP +V W ++ A+ ++ + + + + D G Y
Sbjct: 135 LNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194
Query: 70 NNLGSSQQFIQLS 82
N GS +S
Sbjct: 195 NKYGSETSDFTVS 207
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 72.5 bits (178), Expect = 1e-16
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 2 HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
+ TA C +P + WFR+G I + + L VR+I ++D
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSD 259
Query: 61 FGNYMCQASNNLGSSQQFIQLS 82
G Y+C+A+N G ++ L
Sbjct: 260 GGPYVCRATNKAGEDEKQAFLQ 281
Score = 56.4 bits (136), Expect = 1e-10
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C P + + G I R+ + + L + + D G Y CQA++
Sbjct: 22 KFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81
Query: 71 NLGSSQ 76
G +Q
Sbjct: 82 AKGQTQ 87
Score = 56.0 bits (135), Expect = 1e-10
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
AE++C V ++P V W +T + + ++L + +I +D G Y C+
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 174
Query: 71 NLGSSQQF 78
F
Sbjct: 175 EARGEIDF 182
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 72.6 bits (178), Expect = 2e-16
Identities = 19/85 (22%), Positives = 32/85 (37%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
Y KV W +G+AI R+ V+ E+ L + D G Y+ + +
Sbjct: 130 FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 189
Query: 75 SQQFIQLSGIPNIPVFQKSSRRLGP 99
Q+ + LSG + + R
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQA 214
Score = 72.3 bits (177), Expect = 2e-16
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYMCQAS 69
+ CNV+ +PP +V W ++ A+ ++ + + + + D G Y
Sbjct: 240 LNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299
Query: 70 NNLGSSQQFIQLS 82
N GS +S
Sbjct: 300 NKYGSETSDFTVS 312
Score = 61.5 bits (149), Expect = 2e-12
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 8 DMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
+ + C V + W++D I++ + D +LL+ D G Y
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEV 78
Query: 67 QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV 108
++ G + ++L + + +++ L Q
Sbjct: 79 ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 68.9 bits (169), Expect = 2e-16
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
E+ V P W + I + + S L + + G Y N
Sbjct: 25 VELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84
Query: 71 NLGSSQQFIQLS--GIPNIPVF 90
LGS Q + L+ P+ P
Sbjct: 85 KLGSRQAQVNLTVVDKPDPPAG 106
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 72.5 bits (178), Expect = 2e-16
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
I C+V +NPPA + W RD + + + + K L + D DFG Y C A
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 69 SNNLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVW---QVDTYSAIIQYLL 119
+N++G+ Q L+ +P+ P + + S ++ + I Y +
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTA-----KVSFNKPDSHGGVPIHHYQV 232
Query: 120 KFRE 123
+E
Sbjct: 233 DVKE 236
Score = 63.7 bits (155), Expect = 3e-13
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHI 56
T + + ++C+ P ++ W R T GRI++ SL ++ +
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 57 KDTDFGNYMCQASNNLGSSQQFIQLS 82
K +D G Y C+A++ +G Q+ + L
Sbjct: 71 KLSDSGRYDCEAASRIGGHQKSMYLD 96
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 70.1 bits (172), Expect = 3e-16
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQAS 69
I P + W + I G + V+ SL+ ++ D G Y+ A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 70 NNLGSSQQFIQLS 82
N G Q+ ++L
Sbjct: 182 NRFGIDQKTVELD 194
Score = 55.9 bits (135), Expect = 7e-11
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQA 68
A ++C V +P V+W+R G I G + H L++ + D D Y +A
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81
Query: 69 SNNLGSSQQFIQLS 82
+N GS L
Sbjct: 82 TNQGGSVSGTASLE 95
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 69.7 bits (171), Expect = 4e-16
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQAS 69
+ P + WF + I + + L+++++ + T G Y Q S
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 70 NNLGSSQQFIQLS 82
N G+ + +
Sbjct: 181 NVFGTVDAILDVE 193
Score = 65.5 bits (160), Expect = 2e-14
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A++ C + P ++W+R G + + M H+L V + D G Y C A+N
Sbjct: 25 AQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84
Query: 71 NLGSSQ 76
+G +
Sbjct: 85 EVGEVE 90
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 67.0 bits (164), Expect = 4e-16
Identities = 13/71 (18%), Positives = 23/71 (32%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ + P W + L + + S S+ K D GNY + N
Sbjct: 20 HNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79
Query: 71 NLGSSQQFIQL 81
LG + ++
Sbjct: 80 ELGEDEAIFEV 90
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 67.5 bits (165), Expect = 5e-16
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDF 61
D I V NP ++WF +G + I + H L + + +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 62 GNYMCQASNNLGSSQQFIQLS--GIPNI 87
G+Y A N G ++ I G P I
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWPGI 102
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 69.0 bits (169), Expect = 8e-16
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
++A + C NP V W + +A+ RI + E SL + +++ D G Y C A
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVA 172
Query: 69 SNNLGSSQ-QFIQLSGIPNIPVF 90
N+LG++ + ++L + VF
Sbjct: 173 KNSLGTAYSKLVKL----EVEVF 191
Score = 55.9 bits (135), Expect = 8e-11
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A +C V + P ++ W R+ I L + L + ++D+D G Y C A+N
Sbjct: 25 ATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANN 83
Query: 71 NLGSSQQ 77
+G + +
Sbjct: 84 GVGGAVE 90
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 66.2 bits (162), Expect = 1e-15
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
M S P I NV + P A+V+W+ +G + +I +S +L +
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74
Query: 60 DFGNYMCQASNNLGSSQ 76
D G Y +N G +
Sbjct: 75 DSGTYRAVCTNYKGEAS 91
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 65.8 bits (161), Expect = 1e-15
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 3 SITAPD-MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
+ + +C + +V W+ + + ++ L V+ I D
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLD 69
Query: 61 FGNYMCQASNNLGSSQQFIQLS 82
G Y C+ N+ G + +L
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELF 91
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 65.9 bits (161), Expect = 2e-15
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ +T +A C V ++ +W+++G + RI + H L++ ++
Sbjct: 15 IADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPE 73
Query: 60 DFGNYMCQASNNLGSSQ 76
D G+Y S
Sbjct: 74 DEGDYTFVPDGYALSLS 90
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 70.3 bits (172), Expect = 2e-15
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
M E C V P V W ++G + + +L + + +D G Y C A
Sbjct: 328 MDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI---VGGSNLRILGVVKSDEGFYQCVA 384
Query: 69 SNNLGSSQQFIQLS 82
N G++Q QL
Sbjct: 385 ENEAGNAQSSAQLI 398
Score = 61.8 bits (150), Expect = 1e-12
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A + C V PP W R I L + + +LL+ ++ D D G Y C
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK--YSLLGGSNLLISNVTDDDSGTYTCV 293
Query: 68 ASNNLGSSQQFIQLS 82
+ + +L+
Sbjct: 294 VTYKNENISASAELT 308
Score = 52.9 bits (127), Expect = 2e-09
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 1 MHSITA-PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
SITA + C V +P + W ++ + V +L + ++
Sbjct: 128 TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPG 187
Query: 60 DFGNYMCQASNNLGSSQ 76
D G Y C A N +
Sbjct: 188 DSGVYRCSARNPASTRT 204
Score = 50.6 bits (121), Expect = 1e-08
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 15 CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-----KDTDFGNYMCQA 68
C+ ++ ++W +DG + LG SLL+++I D G Y C+A
Sbjct: 43 CSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEA 101
Query: 69 SNNLGSSQQ----FIQLSGIPNIPVFQKS 93
S S + ++G +S
Sbjct: 102 SLGDSGSIISRTAKVMVAGPLRFLSQTES 130
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 65.0 bits (159), Expect = 4e-15
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A+ P W +DG AIT GG+ + L + +D G Y C
Sbjct: 23 VAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82
Query: 70 NNLGSSQ 76
N+ GS
Sbjct: 83 NSAGSVS 89
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 65.0 bits (159), Expect = 4e-15
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
E+ C + + V W +D AI + D+ L++R D G Y C+
Sbjct: 25 DVELRCEL-SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE 83
Query: 70 NNLGSSQQFIQ 80
+ ++ ++
Sbjct: 84 ASKSTASLHVE 94
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 64.8 bits (158), Expect = 6e-15
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH----SLLVRHIKDTDFGNYMCQA 68
I V NPP + W +G + I + E LL + GNY A
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84
Query: 69 SNNLGSSQQFIQLS 82
N LG++ Q I
Sbjct: 85 KNPLGTANQTINGH 98
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 68.0 bits (166), Expect = 6e-15
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMC 66
++C+ P + W +DG I D S + L +R++ D Y+C
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271
Query: 67 QASNNLGSSQQFIQLS 82
A N G I L
Sbjct: 272 IAENKAGEQDASIHLK 287
Score = 60.7 bits (147), Expect = 3e-12
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A I+C+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRI 176
Query: 71 NLGSSQQFIQLS 82
F +
Sbjct: 177 LARGEINFKDIQ 188
Score = 53.7 bits (129), Expect = 9e-10
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 11 AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKH---SLLVRHIKDTDFGNYMC 66
+C V + + WF + + V +L + + D G Y C
Sbjct: 20 KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79
Query: 67 QASNNLGSSQ-QFIQLSGIPNIPVFQKSSR 95
+ G+ + + I +F+ +
Sbjct: 80 VVTAEDGTQSEATVNVK-IFQKLMFKNAPT 108
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 64.3 bits (157), Expect = 7e-15
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R + + A+P +V+W+++G I + + L + + + TD Y A
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAG 83
Query: 70 NNLGSSQQFIQ 80
+ S++ F++
Sbjct: 84 DEKCSTELFVR 94
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 64.0 bits (156), Expect = 9e-15
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A + C V A +V W++DG ++ ++ + L+V+ + G Y C+A
Sbjct: 28 SATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG 86
Query: 70 NNLGS 74
S
Sbjct: 87 GQQLS 91
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 63.9 bits (156), Expect = 9e-15
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
S+ A KV W R G+ I+ + + +H+L VR +
Sbjct: 15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPA 73
Query: 60 DFGNYMCQASNNLGS 74
D G+Y A ++
Sbjct: 74 DQGSYAVIAGSSKVK 88
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 63.9 bits (156), Expect = 1e-14
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 2 HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDT 59
+++ + + V P V W+ +G + M VS + HSL+ ++ +
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRAS 72
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A N G + +QL
Sbjct: 73 DAGAYACVAKNRAGEATFTVQLD 95
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 63.9 bits (156), Expect = 1e-14
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
E+ C NPP ++ WF+D + I + +L +R ++ D G Y CQA
Sbjct: 27 SIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 70 NNLGSSQ 76
+ LG ++
Sbjct: 85 SVLGCAK 91
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 63.1 bits (154), Expect = 2e-14
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A + + P +W G + ++ +KH L++ + + G QA+
Sbjct: 22 TAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80
Query: 70 NNLGSSQ 76
N ++
Sbjct: 81 NTKSAAN 87
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 62.7 bits (153), Expect = 3e-14
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKD 58
+ S T A V P + EW+++G I RI + + L++R +
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 59 TDFGNYMCQASNNLGS 74
D + M +A N G
Sbjct: 72 EDSASIMVKAINIAGE 87
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 63.2 bits (154), Expect = 3e-14
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R + C + P A+V W +DG + + + L++ ++ D G Y+C+
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID 88
Query: 70 NNLGSSQQFIQ 80
+ S +
Sbjct: 89 DESASFTVTVT 99
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 63.7 bits (155), Expect = 3e-14
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKD 58
+ + + A C V P +V WF+D + + E SL + +
Sbjct: 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 59 TDFGNYMCQASNNLGSSQ 76
D Y C+A N+LG +
Sbjct: 108 DDDAKYTCKAVNSLGEAT 125
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 65.8 bits (160), Expect = 4e-14
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNL 72
+ AKV + + I G + MH+ + + ++D D G Y Q +
Sbjct: 130 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 189
Query: 73 GSSQQFIQLSGIPNIPVFQKSS 94
++ + L G + +++
Sbjct: 190 ATNHSTVVLVGDVFKKLQKEAE 211
Score = 64.2 bits (156), Expect = 2e-13
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C+ P ++ W +D + R+++ K + + + D G Y C +
Sbjct: 20 SLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78
Query: 70 NNLGSSQQFIQLSGIPNIPV 89
+ G + ++ +
Sbjct: 79 DTDGIASSYLIDEEELKRLL 98
Score = 63.9 bits (155), Expect = 2e-13
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 5 TAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
+ + C V + W++D I++ + D +LL+ D G
Sbjct: 233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGI 290
Query: 64 YMCQASNNLGSSQQFIQLS 82
Y ++ G + ++L
Sbjct: 291 YEVILKDDRGKDKSRLKLV 309
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 66.1 bits (161), Expect = 5e-14
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKD 58
P + C NP ++ W DG I R + + L + +
Sbjct: 440 TMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A + +G ++ +L+
Sbjct: 500 NDGGLYKCIAKSKVGVAEHSAKLN 523
Score = 63.0 bits (153), Expect = 6e-13
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 2 HSITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDT 59
+ C+V P ++W DG AI+ I V L + ++ +
Sbjct: 628 EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS 687
Query: 60 DFGNYMCQASNNLGSSQQFIQL 81
GN+ C A N G Q L
Sbjct: 688 HAGNFTCHARNLAGHQQFTTPL 709
Score = 59.6 bits (144), Expect = 9e-12
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQ 67
++C P W++ T + + V +L+++ D G Y+C
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324
Query: 68 ASNNLGSSQQFIQLS 82
+N++G L+
Sbjct: 325 VNNSVGGESVETVLT 339
Score = 59.2 bits (143), Expect = 1e-11
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRI---DMHVSSEKHSLLVRHIKDTDFGNYM 65
A++ C P +V W + + ++ E+ +L V +I+ T+ G Y+
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789
Query: 66 CQASNNLGSS 75
C+A N +GS
Sbjct: 790 CEAINGIGSG 799
Score = 58.4 bits (141), Expect = 3e-11
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C NP V W +DG AI + L + +K D G Y C N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRN 410
Query: 71 NLGSSQQFIQL--SGIPNIPVFQKS 93
+ S++ +L G + PV +++
Sbjct: 411 DRESAEASAELKLGGRFDPPVIRQA 435
Score = 57.6 bits (139), Expect = 5e-11
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQA 68
+ C V P + W RD A+ + + + +L++ ++ +++D Y C A
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALPINRKQKV---FPNGTLIIENVERNSDQATYTCVA 599
Query: 69 SNNLGSSQQ---FIQLSGIPNIPVFQKSSRRLGPDG-YRLVWQVD 109
N G S + +Q+ +P I F L V
Sbjct: 600 KNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Score = 49.9 bits (119), Expect = 3e-08
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 10 RAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF------G 62
AEI C NP ++ W R DGTA+ + S L+ + D+
Sbjct: 56 GAEIECKASGNPMPEIIWIRSDGTAVGDVPGL--RQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 63 NYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 97
Y C A N GS ++ +
Sbjct: 114 VYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Score = 44.9 bits (106), Expect = 1e-06
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 11 AEIICNV---YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNY 64
A I C + A+ V W D G ++ L +R + D + +Y
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 215
Query: 65 MCQASNNLGSSQQFIQ 80
C+ + L +
Sbjct: 216 QCRTKHRLTGETRLSA 231
Score = 29.5 bits (66), Expect = 0.29
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 51 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI-PVFQK 92
+ + + + + A GS PVF K
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLK 43
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 62.0 bits (151), Expect = 6e-14
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
R + C + + W++DG + + + + KH L++ K D G + C+
Sbjct: 27 RVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTE 85
Query: 70 NNLGSSQQFIQ 80
+Q
Sbjct: 86 GVSAFFGVTVQ 96
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 61.6 bits (150), Expect = 8e-14
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQ 67
+ C P +V W G I + H+ + +L++ ++ D G Y
Sbjct: 22 VLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS 81
Query: 68 ASNNLGSSQQFIQLS 82
N GS + +
Sbjct: 82 LGNEFGSDSATVNIH 96
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 63.3 bits (154), Expect = 1e-13
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C +P + WFR+G I + + L VR+I ++D G Y+C+A+N
Sbjct: 22 MTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATN 79
Query: 71 NLGSSQQFIQLS 82
G ++ L
Sbjct: 80 KAGEDEKQAFLQ 91
Score = 63.3 bits (154), Expect = 1e-13
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHIK 57
T + + ++C+ P ++ W R T GRI++ SL ++ +K
Sbjct: 106 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 165
Query: 58 DTDFGNYMCQASNNLGSSQQFIQLS 82
+D G Y C+A++ +G Q+ + L
Sbjct: 166 LSDSGRYDCEAASRIGGHQKSMYLD 190
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 61.6 bits (150), Expect = 1e-13
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ ++ P +V W + G + R+ + S VR +D G Y
Sbjct: 41 QLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99
Query: 70 NNLGSSQQFIQLS 82
I++
Sbjct: 100 IENMKDTATIRIR 112
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 61.6 bits (150), Expect = 1e-13
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A + C + + A VEW + + GGR + + L + + D G Y C
Sbjct: 25 TATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG 82
Query: 70 NNLGSSQQFIQ 80
S+ ++
Sbjct: 83 QERTSATLTVR 93
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 63.3 bits (154), Expect = 1e-13
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A I+C+V ++ P + W G + L + V S + L +R IK TD G Y C+
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRI 176
Query: 71 NLGSSQQFIQLS 82
F +
Sbjct: 177 LARGEINFKDIQ 188
Score = 47.5 bits (113), Expect = 7e-08
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 10 RAEIICNVYANPPAK-VEWFR-DGTAITLG-GRIDM-HVSSEKHSLLVRHIKDTDFGNYM 65
+C V + K + WF +G ++ RI + + +L + + D G Y
Sbjct: 19 SKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78
Query: 66 CQASNNLGSSQ 76
C + G+
Sbjct: 79 CVVTAEDGTQS 89
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 61.3 bits (149), Expect = 1e-13
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 10 RAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
C + + + W G + R K+ L+VR +D G +
Sbjct: 25 SCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV 84
Query: 69 SNNLGSSQQFIQ 80
+ ++
Sbjct: 85 RGLTSKASLIVR 96
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 60.9 bits (148), Expect = 1e-13
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C V A P ++ W +DG + L L++ I D G Y C A++
Sbjct: 28 VTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------PVLILPEIGPQDQGTYSCVATH 78
Query: 71 NLGSSQ 76
+ Q
Sbjct: 79 SSHGPQ 84
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 60.8 bits (148), Expect = 1e-13
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 15 CNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
V P V W R+ + R L + + D G Y C+A N G
Sbjct: 27 IRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG 86
Query: 74 SSQQFIQLS 82
+ Q +L
Sbjct: 87 ARQCEARLE 95
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 63.3 bits (154), Expect = 2e-13
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITL---GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
A ++C NP ++ WF+D + GRI S +L + +++D G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 68 ASNNLGSSQ 76
A+N+ G+
Sbjct: 186 ATNSAGTRY 194
Score = 55.2 bits (133), Expect = 1e-10
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKD-TDFGNYMCQA 68
A IC +P K+ W + G ++ + L ++ ++ D Y C A
Sbjct: 24 ASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83
Query: 69 SNNLGSSQQFIQLS------GIPNIPVFQK 92
SNN+G +L+ P
Sbjct: 84 SNNVGEISVSTRLTVLREDQIPRGFPTIDM 113
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 62.9 bits (153), Expect = 2e-13
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C NP + W ++ T + + S + L + + ++ D G Y C A N
Sbjct: 128 VLMTCKAIGNPTPNIYWIKNQTKVDMSNP---RYSLKDGFLQIENSREEDQGKYECVAEN 184
Query: 71 NLGSSQ 76
++G+
Sbjct: 185 SMGTEH 190
Score = 49.8 bits (119), Expect = 1e-08
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT----DFGNYMC 66
A C +PP + W ++G ++ V + + + I+ D Y C
Sbjct: 24 ASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISILRIEPVRAGRDDAPYEC 82
Query: 67 QASNNLGSSQQ 77
A N +G +
Sbjct: 83 VAENGVGDAVS 93
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 60.4 bits (147), Expect = 2e-13
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ ++ + A C +P A V W + + G+ L + ++
Sbjct: 15 LTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKA 73
Query: 60 DFGNYMCQASNNLGSSQQFIQ 80
D Y C +Q +Q
Sbjct: 74 DSDTYTCDIGQAQSRAQLLVQ 94
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 62.6 bits (152), Expect = 2e-13
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNL 72
+ AKV + + I G + MH+ + + ++D D G Y Q +
Sbjct: 25 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 84
Query: 73 GSSQ 76
++
Sbjct: 85 ATNH 88
Score = 59.9 bits (145), Expect = 2e-12
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 1 MHSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ + + C V + W++D I++ + D +LL+
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKK 181
Query: 60 DFGNYMCQASNNLGSSQQFIQLSG 83
D G Y ++ G + ++L
Sbjct: 182 DAGIYEVILKDDRGKDKSRLKLVD 205
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 61.1 bits (148), Expect = 2e-13
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 10 RAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFG 62
+ +I C + + P P ++ W + G V + +L + +I DF
Sbjct: 30 KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 89
Query: 63 -NYMCQASNNLGSSQQFIQLS 82
Y C A N+ GS + I+L
Sbjct: 90 TIYNCTAWNSFGSDTEIIRLK 110
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 60.1 bits (146), Expect = 2e-13
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C NP + W ++G RI V ++ SL++ + +D GNY C N G
Sbjct: 30 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 89
Query: 74 SSQQFIQL 81
S L
Sbjct: 90 SINHTYHL 97
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 62.5 bits (152), Expect = 2e-13
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
AE++C V ++P V W +T + + ++L + +I +D G Y C+
Sbjct: 114 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 172
Query: 71 NLGSSQQFIQL 81
F +
Sbjct: 173 EARGEIDFRDI 183
Score = 61.7 bits (150), Expect = 4e-13
Identities = 14/67 (20%), Positives = 24/67 (35%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C P + + G I R+ + + L + + D G Y CQA+
Sbjct: 19 SKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 78
Query: 70 NNLGSSQ 76
+ G +Q
Sbjct: 79 DAKGQTQ 85
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 60.5 bits (147), Expect = 3e-13
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 2 HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDT 59
+T + + C V P + W DG + M + HSL++ +
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 60 DFGNYMCQASNNLGSSQQFIQLS--GIPNIP 88
D G Y C A+N G + ++L + P
Sbjct: 77 DAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 62.7 bits (152), Expect = 3e-13
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 9 MRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTD 60
RA + C+ +PP++ WF+DG + + S+ + L+ + +D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 61 FGNYMCQASNNLGSSQQFIQLS 82
G Y C+A N G+ +
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVR 204
Score = 48.4 bits (115), Expect = 5e-08
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFG 62
++ C +VEW D T + + V+ + + + D G
Sbjct: 22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81
Query: 63 NYMCQASNNLGSSQQFIQLSGI----PNIPVFQKSS 94
Y C S G+S +++ I P+ P S
Sbjct: 82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS 117
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 60.1 bits (146), Expect = 3e-13
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+ + + A+ A+V+W ++G I + G + K +L + D Y C
Sbjct: 33 KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91
Query: 69 SNNLGSSQQFIQ 80
S++ F++
Sbjct: 92 GGEKCSTELFVK 103
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 60.7 bits (147), Expect = 4e-13
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFGNYM 65
I +V P + W +G+ + I L + + GNY
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 66 CQASNNLGSSQQFIQL 81
A+N G + I
Sbjct: 80 LLAANPFGQASASIMA 95
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 60.1 bits (146), Expect = 4e-13
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQA 68
++ C + A PP K+ W R+ + RI ++ + + +LL++ + D G Y A
Sbjct: 33 VKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92
Query: 69 SNNLGSSQQFIQLS--GIPNIPV 89
N G + +L PN +
Sbjct: 93 VNEAGVTTCNTRLDVTARPNQTL 115
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 59.8 bits (145), Expect = 4e-13
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++ C + + + W RDG + R + + VR D G Y C S+
Sbjct: 27 LQLRCRL-RDDVQSINWLRDGVQLVESNRTRI----TGEEVEVRDSIPADSGLYACVTSS 81
Query: 71 NLGSSQQFIQLS 82
GS + ++
Sbjct: 82 PSGSDTTYFSVN 93
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 59.3 bits (144), Expect = 5e-13
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C + + + W RDG + R + + V+ D G Y C S+ GS
Sbjct: 25 CRLRDDVQ-SINWLRDGVQLAESNRTRI----TGEEVEVQDSVPADSGLYACVTSSPSGS 79
Query: 75 SQQFIQLSGIPNIP 88
+ ++ +P
Sbjct: 80 DTTYFSVNVSDALP 93
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 59.6 bits (145), Expect = 5e-13
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIK 57
+ TA R E+ C V + A V+WF++G I G + + E KH L++
Sbjct: 14 LEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 58 DTDFGNYMCQASNNLGSSQQFIQL 81
D Y + S++ + L
Sbjct: 73 KADAAEYSVMTTGGQSSAKLSVDL 96
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 62.5 bits (151), Expect = 8e-13
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 11 AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
++ C ANPPA + W ++ G + + I + G Y+C+A+
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAGTYICEAT 304
Query: 70 NNLGSSQQFIQLS 82
N +G+ ++++
Sbjct: 305 NPIGTRSGQVEVN 317
Score = 42.0 bits (98), Expect = 1e-05
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 5 TAPDMRAEIICNV-YANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDF 61
D C PP+ V W R + + ++
Sbjct: 147 GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQ 206
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
+ C + ++ ++ + L+
Sbjct: 207 QSLACIVNYHMDRFKESLTLN 227
Score = 37.4 bits (86), Expect = 4e-04
Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 24/108 (22%)
Query: 11 AEIICNVYANPP----AKVEWFRDGTAI---------TLGGRID---------MHVSSEK 48
+ C+ P +V W + ++G + + S
Sbjct: 32 VVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91
Query: 49 HSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSGIPNIPVFQKSSR 95
++ + ++ D G Y+C+ + G+ + + L+ + P
Sbjct: 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT-VMAKPTNWIEGT 138
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 62.6 bits (152), Expect = 8e-13
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
I AP ++C NP V+W +G + + + +++ R + +
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAV 381
Query: 64 YMCQASNNLGSSQQFIQLS 82
Y C SN G +S
Sbjct: 382 YQCNTSNEHGYLLANAFVS 400
Score = 57.2 bits (138), Expect = 5e-11
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
M + C P + W++ G + + +L + ++ + D G Y C
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCL 293
Query: 68 ASNNLGSSQQFIQLS 82
ASN +GS + I +
Sbjct: 294 ASNKMGSIRHTISVR 308
Score = 57.2 bits (138), Expect = 6e-11
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR----HIKDT 59
I P I C NP W R+ + + + +L++ +
Sbjct: 28 IVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87
Query: 60 DFGNYMCQASNNLGSSQQ---FIQLSGIPNIPVFQKSS 94
G Y C A N G++ +Q+S P P
Sbjct: 88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP 125
Score = 42.5 bits (100), Expect = 7e-06
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 11 AEIICNVYA-NPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTD-FGNYMCQ 67
+ CN P + W IT R+ L ++ D +Y C
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV---SQGHNGDLYFSNVMLQDMQTDYSCN 190
Query: 68 ASNNLGSSQQ---FIQLSGIPNIPVFQKSSRRLGP 99
A + + Q L + V +++ + P
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYP 225
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 62.5 bits (152), Expect = 8e-13
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C P W ++G + RI + E+ +L + + +D G Y C A N
Sbjct: 313 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAEN 368
Query: 71 NLGSSQQFIQLS 82
G +LS
Sbjct: 369 KHGVIFSSAELS 380
Score = 56.8 bits (137), Expect = 9e-11
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFG 62
+ + + + ++ C V NP + W +GT + +G D S SLL+ + K D G
Sbjct: 19 LDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM--DFRYSVVDGSLLINNPNKTQDAG 76
Query: 63 NYMCQASNNLG---SSQQFIQLSGIPNIPV 89
Y C A+N+ G S + +Q + + N
Sbjct: 77 TYQCIATNSFGTIVSREAKLQFAYLENFKT 106
Score = 54.8 bits (132), Expect = 5e-10
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 10 RAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
++ C NP + W R DG I R L + + + D G+Y C A
Sbjct: 222 TVKLECFALGNPVPTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAGSYECVA 277
Query: 69 SNNLGSSQQFIQLS 82
N+ G + QL+
Sbjct: 278 ENSRGKNVAKGQLT 291
Score = 48.3 bits (115), Expect = 9e-08
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 11 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
++C + W + R VS E +L + ++ +D GNY C +
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNEYPSYQDNRR--FVSQETGNLYIAKVEKSDVGNYTCVVT 177
Query: 70 NNLGSSQQF 78
N + + +
Sbjct: 178 NTVTNHKVL 186
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 62.2 bits (150), Expect = 9e-13
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 4 ITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
T ++ C + YA + W+++ + + G S +L++ + + D G
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSG 195
Query: 63 NYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRR 96
Y C + + I +S + V R
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR 229
Score = 49.4 bits (117), Expect = 3e-08
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 10 RAEIICNVYANP----PAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTD 60
A I C + ++W I + + +L ++ +
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304
Query: 61 FGN-YMCQASNNLGSSQQFIQL 81
GN Y C+ N +
Sbjct: 305 IGNTYTCRGHNYYFDKTLTTTV 326
Score = 36.7 bits (84), Expect = 7e-04
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
S P + ++ + Y + V W + G R ++ + L + + D
Sbjct: 48 SAKCPPIEDSLLSHRYNDKDNVVNWEKIGK-----TRRPLNRRVKNGDLWIANYTSNDSH 102
Query: 63 N-YMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 97
Y+C + G Q I S I P + L
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL 138
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 62.1 bits (151), Expect = 9e-13
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
P I C +P V+W + +T + + ++ D NY C
Sbjct: 219 PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTC 272
Query: 67 QASNNLGSSQQFIQLS--GIPNIPV 89
A ++LG + Q++ +P
Sbjct: 273 VAMSSLGVIEAVAQITVKSLPKAGT 297
Score = 59.5 bits (144), Expect = 7e-12
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A ++C NP ++ WF+D + +L + ++TD G Y C A+N
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 71 NLG---SSQQFIQLSGIPNIPVFQK 92
+ G SS + + P F
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSI 210
Score = 54.1 bits (130), Expect = 7e-10
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT---- 59
I A +C +P +V W + G + + ++L I+
Sbjct: 17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL--RIQPLRTPR 74
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D Y C A N++G +L+
Sbjct: 75 DENVYECVAQNSVGEITVHAKLT 97
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 58.9 bits (143), Expect = 9e-13
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
A + C + ++ A V+W + G + + L+VR+++ D G Y C
Sbjct: 24 GAATLRCVL-SSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF 82
Query: 69 SNNLGSSQQFIQLSGIPNIP 88
+ S+ + +P+ P
Sbjct: 83 GDQTTSATLTVT--ALPSGP 100
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 61.0 bits (148), Expect = 9e-13
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 11 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A + C +P + W +DG+ + ++ L++ + + +D G Y+C +
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGT 185
Query: 70 NNLGSSQ 76
N +G +
Sbjct: 186 NMVGERE 192
Score = 44.8 bits (106), Expect = 9e-07
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSSEKHSLLVRHI-----KDTDFGN 63
A + C P +EW++ G + + SL I D G
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 64 YMCQASNNLGSS 75
Y+C A N LG +
Sbjct: 87 YVCVARNYLGEA 98
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 58.5 bits (142), Expect = 1e-12
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAIT----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
R E+ V + A+V W ++G +T R ++H L+ + D G Y
Sbjct: 25 RVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ 83
Query: 66 CQASNNLGSSQQFIQ 80
+ ++ ++
Sbjct: 84 VITNGGQCEAELIVE 98
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 58.5 bits (142), Expect = 1e-12
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ + + C+V P ++ W +G I + L ++
Sbjct: 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPE 74
Query: 60 DFGNYMCQASNNLGSSQ 76
D G Y C A N LG
Sbjct: 75 DHGTYTCLAENALGQVS 91
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 61.1 bits (148), Expect = 1e-12
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C NP + W ++G RI V ++ SL++ + +D GNY C
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 70 NNLGSSQQFIQLS 82
N GS L
Sbjct: 97 NEYGSINHTYHLD 109
Score = 57.6 bits (139), Expect = 2e-11
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRID-----------MHVSSEKHSLLVRHIKDT 59
E +C VY++ ++W + D SS L + ++ +
Sbjct: 136 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA 195
Query: 60 DFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQK 92
D G Y+C+ SN +G + Q L+ P +K
Sbjct: 196 DAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 61.7 bits (149), Expect = 1e-12
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 10 RAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
A + C+ +NP P W G + ++ LL+R + +C
Sbjct: 234 EATLTCDARSNPEPTGYNWSTTM------GPLPPFAVAQGAQLLIRPVDKPINTTLICNV 287
Query: 69 SNNLGSSQQFIQLS 82
+N LG+ Q + +
Sbjct: 288 TNALGARQAELTVQ 301
Score = 49.3 bits (117), Expect = 3e-08
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 8 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGN 63
+ C PPA++ W D + ++ +S + ++ D N
Sbjct: 132 EPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKN 191
Query: 64 YMCQASNNLGSSQQ 77
C+ + Q
Sbjct: 192 VTCKVEHESFEKPQ 205
Score = 41.6 bits (97), Expect = 2e-05
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 26/106 (24%)
Query: 11 AEIICNVYANPP-----AKVEWFRDGTAITLG------------------GRIDMHVSSE 47
+ C + +++ W R G + ++ +
Sbjct: 18 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77
Query: 48 KHSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSGI--PNIPVF 90
SL + ++ D GNY C GS I L + P
Sbjct: 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE 123
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 60.7 bits (147), Expect = 1e-12
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C NP + W + + I S+ L + +I+ D G Y C+A
Sbjct: 130 NVTLECFALGNPVPDIRWRKVLEPMPSTAEI----STSGAVLKIFNIQLEDEGIYECEAE 185
Query: 70 NNLGSSQQFIQLS 82
N G + ++
Sbjct: 186 NIRGKDKHQARIY 198
Score = 53.4 bits (128), Expect = 7e-10
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 11 AEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
++C+ + P W + + + VS +L + +++ +D GNY C
Sbjct: 26 MVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV 85
Query: 69 SNNLGSSQQFIQLSGIPNIPVFQ 91
S+ + F + + IP
Sbjct: 86 SSPSITKSVFSKFIPLIPIPERT 108
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 60.2 bits (146), Expect = 1e-12
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDT- 59
A + C P + W + + GR + L + +++ T
Sbjct: 105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A+N++GS+ L
Sbjct: 165 DPGEYECNATNSIGSASVSTVLR 187
Score = 50.6 bits (121), Expect = 6e-09
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 11 AEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+ CN+ ++ + W ++G +T + + + + D G Y C
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN-----MEYRINKPRAEDSGEYHCVY 75
Query: 69 SNNLGSSQQFIQLS 82
+ + + + +
Sbjct: 76 -HFVSAPKANATIE 88
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 61.4 bits (149), Expect = 2e-12
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C P V W RDG + RI++ L + D G Y C A N
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAEN 367
Query: 71 NLGSSQQFIQLS 82
G+ +L+
Sbjct: 368 KHGTVYASAELT 379
Score = 55.6 bits (134), Expect = 2e-10
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNY 64
+ + + + C ANPPA W +GT + +G D L++ +K D G+Y
Sbjct: 20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVISNPVKAKDAGSY 77
Query: 65 MCQASNNLG---SSQQFIQLSGIPNIPV 89
C A+N G S + ++ +
Sbjct: 78 QCVATNARGTVVSREASLRFGFLQEFSA 105
Score = 54.9 bits (132), Expect = 4e-10
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C + NP +++W + G S + L ++++ D G Y C+A N
Sbjct: 225 VTLECFAFGNPVPQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 71 NLGSSQQFIQLS 82
G ++
Sbjct: 279 IKGRDTYQGRII 290
Score = 50.2 bits (120), Expect = 2e-08
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C+ P W + + VS +L + + +D GNY C A+
Sbjct: 119 VMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFAT 178
Query: 70 NNLGSSQQFIQLSGIPNIPVFQKSSRRLGP 99
+++ + + + + + +R+ P
Sbjct: 179 SHIDFITKSVFSKFSQ-LSLAAEDARQYAP 207
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 60.3 bits (146), Expect = 2e-12
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C NP + W ++G RI + ++ SL++ + +D GNY C
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 92
Query: 70 NNLGSSQQFIQLS---GIPNIPVFQ 91
N GS +Q L P+ P+ Q
Sbjct: 93 NKFGSIRQTYTLDVLERSPHRPILQ 117
Score = 52.6 bits (126), Expect = 2e-09
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 11 AEIICNVYANPPAKVEWFR-----------DGTAITLGGRIDMHVSSEK-HSLLVRHIKD 58
E C VY++ ++W + DGT + + S E L + ++ +
Sbjct: 132 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y+C+A+N +G +++ LS
Sbjct: 192 RDGGEYLCRATNFIGVAEKAFWLS 215
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 58.2 bits (141), Expect = 2e-12
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ 67
A C + V WF D T + ++ H L +R + D G +
Sbjct: 29 SSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88
Query: 68 ASNNLGSSQQFIQLSGIPNIPVFQKS 93
A G + L VF +S
Sbjct: 89 A----GDQRASAALRVTEKPSVFSRS 110
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 61.1 bits (148), Expect = 3e-12
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
I C +NP +F++G + RI H + LL + D G Y C+
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 68 ASNNLGSSQ 76
N +G Q
Sbjct: 289 VDNGVGKPQ 297
Score = 58.4 bits (141), Expect = 3e-11
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
I C V P V W + ++ GGR + L+++ +K+ D G Y C+A+N
Sbjct: 327 VTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVT----DSGLVIKGVKNGDKGYYGCRATN 381
Query: 71 NLGSSQQFIQLS 82
G +
Sbjct: 382 EHGDKYFETLVQ 393
Score = 56.1 bits (135), Expect = 2e-10
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 4 ITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
+ + + C + N K W +DG + + + ++ SL+ + +D G
Sbjct: 17 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEG 75
Query: 63 NYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 93
+Y C A G S + + + P
Sbjct: 76 HYQCFAETPAGVASSRVISFRKTYLIASPAKTHE 109
Score = 43.7 bits (103), Expect = 3e-06
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 11 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMH----VSSEKHSLLVRHIKDTD---FG 62
++ C + A P + W + + + + +L + D
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 63 NYMCQASNNLGSSQQ 77
Y+C A N +
Sbjct: 178 KYVCTAKNAAVDEEV 192
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 60.8 bits (147), Expect = 3e-12
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQA 68
C NP + W ++G RI + + ++ SL++ + +D GNY C
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 69 SNNLGSSQQFIQLS 82
N GS +Q L
Sbjct: 200 ENKFGSIRQTYTLD 213
Score = 53.1 bits (127), Expect = 2e-09
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
E+ C P W +DGT + R+ + L V + D G Y C+
Sbjct: 26 VELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQR 81
Query: 70 NNLGSSQQFIQL 81
F
Sbjct: 82 LTQRVLCHFSVR 93
Score = 52.3 bits (125), Expect = 3e-09
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 11 AEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIK 57
E C VY++ ++W + +G+ + G + V E L + ++
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299
Query: 58 DTDFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A N++G S L
Sbjct: 300 FEDAGEYTCLAGNSIGFSHHSAWLV 324
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 57.3 bits (139), Expect = 4e-12
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C + N P +W ++G + R+ + H L++ + D G+Y+
Sbjct: 24 EICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD 81
Query: 70 NNLGSSQQFIQLSGIPN 86
+ + + P+
Sbjct: 82 AYNVTLPAKVHVISGPS 98
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 60.5 bits (146), Expect = 5e-12
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 4/71 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A P + W + + +S+ G Y+ A N
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFHAEN 399
Query: 71 NLGSSQQFIQL 81
+ + L
Sbjct: 400 DDAQFTKMFTL 410
Score = 57.4 bits (138), Expect = 5e-11
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ V A W +++ D+ S+++ + +T G Y+ +
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQS 124
Query: 71 NLGSSQQFIQLSGIPNIPVF--QKSSRRLGPDGYRLVWQVDTY 111
+ +S I N ++ ++ R + LV ++
Sbjct: 125 EATNYTILFTVS-IRNTLLYTLRRPYFRKMENQDALVCISESV 166
Score = 56.6 bits (136), Expect = 9e-11
Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 6 APDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH------SLLVRHIKD 58
I C N + W + A+ G +M S V +
Sbjct: 240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299
Query: 59 TDFGNYMCQASNNLGSSQQ 77
D G Y C +S + S
Sbjct: 300 NDTGYYTCSSSKHPSQSAL 318
Score = 42.4 bits (99), Expect = 8e-06
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
++C + P VEW + V ++ + + + + C A N L
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGTDIRCCARNEL 214
Query: 73 GSSQ 76
G
Sbjct: 215 GREC 218
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 60.1 bits (145), Expect = 6e-12
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 4/71 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A P + W + + +S+ G Y+ A N
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFHAEN 399
Query: 71 NLGSSQQFIQL 81
+ + L
Sbjct: 400 DDAQFTKMFTL 410
Score = 57.4 bits (138), Expect = 6e-11
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ V A W +++ D+ + S+++ + +T G Y+ +
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 71 NLGSSQQFIQL 81
+ +
Sbjct: 125 EATNYTILFTV 135
Score = 54.3 bits (130), Expect = 7e-10
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 10 RAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH------SLLVRHIKDTDFG 62
I C N + W + A+ G +M S V + D G
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303
Query: 63 NYMCQASNNLGSS 75
Y C +S + S
Sbjct: 304 YYTCSSSKHPSQS 316
Score = 51.6 bits (123), Expect = 6e-09
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 3 SITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHS----------L 51
+ A ++ C P W + + I V + K +
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476
Query: 52 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ + C A N+LG+S + I L+
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
++C + P VEW + V ++ + + + + C A N L
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE----KVLHELFGTDIRCCARNEL 214
Query: 73 G---SSQQFIQLSGIPNIPVFQKS 93
G + I L+ P + Q
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQLF 238
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 57.0 bits (138), Expect = 6e-12
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTDFGNYMC 66
M C V NP K+ WF+DG I+ SL D GNY
Sbjct: 24 MPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83
Query: 67 QASNNLGSSQ 76
A+N G
Sbjct: 84 MAANPQGRIS 93
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 56.2 bits (136), Expect = 8e-12
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C +P +WF++ +T K +V ++ G Y C N+ S
Sbjct: 25 CVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCHVYNDRDS 75
Query: 75 SQ 76
Sbjct: 76 QD 77
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 59.4 bits (143), Expect = 1e-11
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C + N + W++D + + + K L K D G+Y C N+
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86
Query: 74 SSQQFIQLSGIPNIPVFQKSSR 95
+ I + N P +++
Sbjct: 87 CLRIKISAKFVENEPNLCYNAQ 108
Score = 54.7 bits (131), Expect = 5e-10
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRI------------DMHVSSEKHSLLVRHIK 57
+ ++ICNV W +G+ I + + S+ L + I+
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 58 DTDF-GNYMCQASNNLGSSQQFIQL 81
+ + C A N G +IQL
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 53.2 bits (127), Expect = 1e-09
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 11 AEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
++C N K++W++D + L H S K L+V ++ + GNY
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGNY 177
Query: 65 MCQASNNLGSSQ 76
C AS Q
Sbjct: 178 TCHASYTYLGKQ 189
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 58.4 bits (141), Expect = 1e-11
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C +P +WF++ +T K +V ++ G Y C N
Sbjct: 136 LVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCHVYN 186
Query: 71 NLGSSQ 76
+ S
Sbjct: 187 DRDSQD 192
Score = 54.5 bits (131), Expect = 3e-10
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C +P + +WF+ I + L+ + D G Y+C+ +NN
Sbjct: 40 CRATGHPFVQYQWFKMNKEIP---------NGNTSELIFNAVHVKDAGFYVCRVNNNFTF 90
Query: 75 SQQ 77
Sbjct: 91 EFS 93
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 59.3 bits (143), Expect = 1e-11
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
+P + W ++ +A T+ G + + ++ +L + D G Y+C N
Sbjct: 47 LWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC 106
Query: 75 SQQFIQLS 82
+ I+L
Sbjct: 107 DKMSIELR 114
Score = 52.8 bits (126), Expect = 2e-09
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++ K++W++D + + V LLV + D G Y C +
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTF 201
Query: 71 NLGSSQQFIQLS 82
Q I S
Sbjct: 202 AHEGQQYNITRS 213
Score = 43.5 bits (102), Expect = 3e-06
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%)
Query: 7 PDMRAEIICNVYA---NPPAKVEWFR----------DGTAITLGGRIDMHVSSEK---HS 50
R I C V+ P + W+ G +T G R + ++E
Sbjct: 240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVP 299
Query: 51 LLVRHIKDTDFG-NYMCQASNNLGSSQQFIQL 81
L+ + D ++ C N L +
Sbjct: 300 LIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 59.2 bits (143), Expect = 1e-11
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C A W+ +G ++ + R + +S+ +L + ++ D Y+C N
Sbjct: 485 VAFTCEPEAQNTT-YLWWVNGQSLPVSPR--LQLSNGNRTLTLFNVTRNDARAYVCGIQN 541
Query: 71 NLGSSQ 76
++ +++
Sbjct: 542 SVSANR 547
Score = 57.7 bits (139), Expect = 5e-11
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C+ +NP + W +G L + I + G Y C S
Sbjct: 576 NLNLSCHSASNPSPQYSWRINGIPQQHTQ-----------VLFIAKITPNNNGTYACFVS 624
Query: 70 NNLGSSQQFIQLS 82
N I S
Sbjct: 625 NLATGRNNSIVKS 637
Score = 56.1 bits (135), Expect = 2e-10
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C+ +NPPA+ WF +GT L + +I + G+Y CQA N
Sbjct: 221 LNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHN 269
Query: 71 NLGSSQQ----FIQLSGIPNIPVFQKSSRRLGPDG 101
+ + I + P P ++ D
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304
Score = 55.7 bits (134), Expect = 2e-10
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
P + + C+ +NPPA+ W DG L + +I + + G Y
Sbjct: 394 RPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYT 442
Query: 66 CQASNNLGSSQQ--FIQLSGIPNIPVFQKSS 94
CQA+N+ + ++ +P SS
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISS 473
Score = 55.3 bits (133), Expect = 3e-10
Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
C W+ + ++ + R + +S+ +L + ++ D +Y C+ N
Sbjct: 129 VAFTCEPETQDA-TYLWWVNNQSLPVSPR--LQLSNGNRTLTLFNVTRNDTASYKCETQN 185
Query: 71 NLGSSQQ---FIQLSGIPNIPVFQKSS 94
+ + + + + P+ P +
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLN 212
Score = 55.0 bits (132), Expect = 5e-10
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
C W+ + ++ + R+ +S++ +L + + D G Y C N L
Sbjct: 311 CEPEIQNTT-YLWWVNNQSLPVSPRL--QLSNDNRTLTLLSVTRNDVGPYECGIQNELSV 367
Query: 74 --SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ 107
S + + P+ P S P G L
Sbjct: 368 DHSDPVILNVLYGPDDPTISPSYTYYRP-GVNLSLS 402
Score = 42.2 bits (99), Expect = 1e-05
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH----------------SLLVR 54
++ + W++ I + +++ SLL++
Sbjct: 17 VLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQ 76
Query: 55 HIKDTDFGNYMCQASNNL-GSSQQFIQLSGIPNIPVFQKSS 94
+I D G Y + + + Q P +P SS
Sbjct: 77 NIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 58.1 bits (140), Expect = 1e-11
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 9 MRAEIICNVY-ANPPAKVEWFRDGTAITLGGRID--------MHVSSEKHSLLVRHIKDT 59
RA + C+ + +PP++ WF+DG ++ + + L+ +
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 60 DFGNYMCQASNNLGSSQQFIQL 81
D G Y CQA N G++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAA 201
Score = 45.7 bits (108), Expect = 4e-07
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 14/109 (12%)
Query: 11 AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFG 62
++ C +VEW G+ L + + + D G
Sbjct: 19 IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNG 78
Query: 63 NYMCQASNNLGS--SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQ 107
Y C S G + I L+ + P+ P S G R V
Sbjct: 79 EYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSV--TIGNRAVLT 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 59.0 bits (142), Expect = 1e-11
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 7/88 (7%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-------HSLLV 53
I +V P + W +G+ + I L +
Sbjct: 254 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 54 RHIKDTDFGNYMCQASNNLGSSQQFIQL 81
+ GNY A+N G + I
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQASASIMA 341
Score = 46.7 bits (110), Expect = 3e-07
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C V + W + + S L D + N C A N
Sbjct: 176 VLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL-GLTLANVTSDLNRKNVTCWAEN 234
Query: 71 NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD 109
++G ++ +Q+ + P + + + + + VD
Sbjct: 235 DVGRAEVSVQV--NVSFPASVQLHTAVEMHHWCIPFSVD 271
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 58.8 bits (142), Expect = 1e-11
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQ 67
++C P W++ T + + V +L+++ D G Y+C
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288
Query: 68 ASNNLGSSQQFIQLS 82
+N++G L+
Sbjct: 289 VNNSVGGESVETVLT 303
Score = 55.3 bits (133), Expect = 3e-10
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C NP V W +DG AI L + +K D G Y C N
Sbjct: 325 AVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRN 374
Query: 71 NLGSSQQFIQLS 82
+ S++ +L
Sbjct: 375 DRESAEASAELK 386
Score = 45.7 bits (108), Expect = 6e-07
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 12/97 (12%)
Query: 7 PDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF---- 61
AEI C NP ++ W R DGTA+ + S L+ + D+
Sbjct: 18 NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GKLVFPPFRAEDYRQEV 75
Query: 62 --GNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 93
Y C A N G S ++
Sbjct: 76 HAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK 112
Score = 39.9 bits (93), Expect = 7e-05
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 11 AEIICNV---YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNY 64
A I C + A+ V W D G ++ L +R + D + +Y
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 180
Query: 65 MCQASNNLGSSQQF 78
C+ + L +
Sbjct: 181 QCRTKHRLTGETRL 194
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 55.9 bits (135), Expect = 2e-11
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C +P + W +DG ++ E L +R+ K D G Y C AS
Sbjct: 25 TFVLSCVATGSPVPTILWRKDGVLVSTQDSR--IKQLENGVLQIRYAKLGDTGRYTCIAS 82
Query: 70 NNLGSSQQFIQL 81
G + +
Sbjct: 83 TPSGEATWSAYI 94
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 57.0 bits (137), Expect = 3e-11
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 10 RAEIICNVYANPPA-KVEWFRDGTAI------TLGGRIDMHVSSEKHSLLVRHIKDT-DF 61
A ++C + PP W++ + R + S + L + ++ D
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159
Query: 62 GNYMCQASNNLGSSQQFIQL 81
G Y C +++ GS Q I L
Sbjct: 160 GQYRCNGTSSKGSDQAIITL 179
Score = 50.4 bits (120), Expect = 6e-09
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD 58
++ + + C++ + W + G + + + D
Sbjct: 6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVDSD 58
Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS 93
+G Y C + IQL G P + + S
Sbjct: 59 DQWGEYSCVFLPEPMGTAN-IQLHGPPRVKAVKSS 92
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 56.7 bits (137), Expect = 3e-11
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQA 68
++ C+V ++W +DG + ++ + VS + L ++ ++ +D G Y CQ
Sbjct: 20 VKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79
Query: 69 SNNLGSSQ 76
+ +
Sbjct: 80 EDGGETEI 87
Score = 51.0 bits (122), Expect = 4e-09
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 6 APDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
P+ ++ C P P + W+R T I ++ T +
Sbjct: 111 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG---------GPAPSPSVLNVTGVTQSTMF 161
Query: 65 MCQASNNLGSSQ 76
C+A N G +
Sbjct: 162 SCEAHNLKGLAS 173
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 57.7 bits (139), Expect = 3e-11
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 9 MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYM 65
A+I+C+ + V + T + + + D H + + +L + + GNY
Sbjct: 202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYS 261
Query: 66 CQASNNLGSSQQFIQL 81
C ASN G +
Sbjct: 262 CVASNVQGKHSTSMFF 277
Score = 43.4 bits (102), Expect = 4e-06
Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 9/89 (10%)
Query: 11 AEIICNVYA-NPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
A + C + A V R G + S H + K +Y C A
Sbjct: 107 ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNY---SFSPWHGFTIHRAKFIQSQDYQCSA 163
Query: 69 SNNLGSSQ----QFIQLSGIPNIPVFQKS 93
+ IP P
Sbjct: 164 LMGGRKVMSISIRLKVQKVIPGPPALTLV 192
Score = 36.9 bits (85), Expect = 7e-04
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 9/81 (11%)
Query: 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
+ P + C VEW ++ L + +
Sbjct: 13 ELVVKPGATVTLRCVG----NGSVEWDGP-----PSPHWTLYSDGSSSILSTNNATFQNT 63
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
G Y C + I L
Sbjct: 64 GTYRCTEPGDPLGGSAAIHLY 84
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 56.8 bits (137), Expect = 4e-11
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 11 AEIICN-VYANPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNY 64
A + C P + W +DG + + SS + +LL+ +++ D GNY
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 65 MCQASNNLGSSQ 76
C A N +G+ +
Sbjct: 186 KCIAQNLVGTRE 197
Score = 52.6 bits (126), Expect = 2e-09
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS----SEKHSLLVRHIKDTDFGNYMC 66
A + C V P +EWF+DG ++ + V + ++ K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 QASNNLG---SSQQFIQLSGIPNIPVFQK 92
A N +G S +Q++ + F+
Sbjct: 87 VAKNRVGQAVSRHASLQIAVLR--DDFRV 113
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 55.1 bits (133), Expect = 4e-11
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ + A + A + C + + A VEW++ + G R + + L +R +
Sbjct: 26 LRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAE 83
Query: 60 DFGNYMCQASN 70
D G Y+C
Sbjct: 84 DAGEYLCMCGK 94
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 57.5 bits (139), Expect = 5e-11
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
A C V A+ P V W +D + + + + L + +K D G Y +A N
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Query: 71 NLGSSQQFIQL 81
+ G+ ++ + L
Sbjct: 560 SYGTKEEIVFL 570
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 53.9 bits (130), Expect = 7e-11
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAI-TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
A D A + C +P + W ++G R + E+ +L +++++ +D G Y
Sbjct: 21 AVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRISDTGTY 77
Query: 65 MCQASNNLGSSQQFIQLS 82
C A+++ G + L
Sbjct: 78 TCVATSSSGETSWSAVLD 95
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 53.3 bits (128), Expect = 1e-10
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
IC + +P + W R G++ L +R+++ +D G Y+C
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH-----NGKLPSRAMDFNGILTIRNVQPSDAGTYVCTG 81
Query: 69 SNNLGSSQQFIQLS 82
SN Q L
Sbjct: 82 SNMFAMDQGTATLH 95
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 56.2 bits (135), Expect = 1e-10
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 6 APDMRAEIICNVYANP-PAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDT 59
++I A P P +W T + L + +K T
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
+ G Y SN+ ++ +
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFNVY 408
Score = 55.4 bits (133), Expect = 3e-10
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGN 63
+ C + + W R+ + L + + + + +L + + D G
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV 287
Query: 64 YMCQASNNLGSSQQFIQLS--GIPNIPVF 90
+MC A+N GS+ L I +F
Sbjct: 288 FMCYANNTFGSANVTTTLEVVDKGFINIF 316
Score = 54.7 bits (131), Expect = 6e-10
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 15/101 (14%)
Query: 4 ITAPD-MRAEIICNVYANPPAKVEWF-------RDGTAITLGGRIDMHVSSEKH-----S 50
+T + + C P ++W+ R ++ ++ S
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475
Query: 51 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPV 89
+ G C+A N++G + + + G +
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI 516
Score = 41.6 bits (97), Expect = 2e-05
Identities = 5/66 (7%), Positives = 14/66 (21%), Gaps = 1/66 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C + +P + L + + ++ + C
Sbjct: 132 TLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ 190
Query: 71 NLGSSQ 76
S
Sbjct: 191 EGKSVL 196
Score = 38.5 bits (89), Expect = 2e-04
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
++C P V+W + +D ++++ + + T+ G Y C +
Sbjct: 54 IRLLCTD----PGFVKWTFEI--------LDETNENKQNEWITEKAEATNTGKYTCTNKH 101
Query: 71 NLGSS 75
L +S
Sbjct: 102 GLSNS 106
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 55.1 bits (132), Expect = 2e-10
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 9 MRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
++ C + P + EW + + T+ + V++ G Y C
Sbjct: 137 NDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP--WLAEMTSPVISVKNASSEYSGTYSCT 194
Query: 68 ASNNLGSSQQFIQLS 82
N +GS Q ++L
Sbjct: 195 VQNRVGSDQCMLRLD 209
Score = 39.3 bits (91), Expect = 9e-05
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 30/114 (26%)
Query: 11 AEIICNVYANP----PAKVEWFRDGTAIT---------------------LGGRI---DM 42
A + C +P P +EW + L GR+
Sbjct: 18 AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN 77
Query: 43 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSS 94
V S S+ V +++ +D G Y C+ G + + L+ P+
Sbjct: 78 DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDG 131
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 56.0 bits (134), Expect = 2e-10
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 3 SITAP-DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
+ T P + + +C + NP +++ +DGT G +
Sbjct: 379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES-------------VTVTRDLE 425
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
G Y+C+A + G + + ++
Sbjct: 426 GTYLCRARSTQGEVTREVTVN 446
Score = 44.1 bits (103), Expect = 3e-06
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 11 AEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
+ C V P V R + R + + V +D N+ C+
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCR 160
Query: 68 ASNNLGS 74
+L
Sbjct: 161 TELDLRP 167
Score = 38.7 bits (89), Expect = 2e-04
Identities = 5/72 (6%), Positives = 18/72 (25%), Gaps = 12/72 (16%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C + + + LL++ + + ++ C A+
Sbjct: 301 VTVKCEAHPRAKVTLNGVPAQP------------LGPRAQLLLKATPEDNGRSFSCSATL 348
Query: 71 NLGSSQQFIQLS 82
+ +
Sbjct: 349 EVAGQLIHKNQT 360
Score = 33.3 bits (75), Expect = 0.013
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 1 MHSITAPDMRAEIICNVYANPP---AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 57
+ D + ++C++ P A+V + S K S+ V +
Sbjct: 196 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AE 254
Query: 58 DTDFGNYMCQASNNLGSSQQFIQLS 82
D C S + ++
Sbjct: 255 DEGTQRLTCAVILGNQSQETLQTVT 279
Score = 28.7 bits (63), Expect = 0.46
Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C+ + P + L + + + + + ++++ MC ++
Sbjct: 17 VLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNC 69
Query: 71 NLGSSQQFIQLS 82
G S L+
Sbjct: 70 PDGQSTAKTFLT 81
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 55.5 bits (133), Expect = 2e-10
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGNY 64
++C V N EW + L + + D G Y
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257
Query: 65 MCQASNNLGSSQQFIQLS 82
C + ++ Q ++
Sbjct: 258 TCNVTESVNDHQDEKAIN 275
Score = 41.2 bits (96), Expect = 2e-05
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 13/98 (13%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
I C V +P V + L D + +Y+C+ +
Sbjct: 113 ITIPCRV-TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF---------EDRSYICKTTI 162
Query: 71 NLG---SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
S ++ + +I V + + + G +
Sbjct: 163 GDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Score = 36.6 bits (84), Expect = 0.001
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 8/87 (9%)
Query: 22 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ---- 77
A V W R + L + ++ D G Y C +++ G
Sbjct: 25 SAPVVWERMSQEPPQEMAKAQDGTFSS-VLTLTNLTGLDTGEYFCTHNDSRGLETDERKR 83
Query: 78 ---FIQLSGIPNIPVFQKSSRRLGPDG 101
F+ + +P + +
Sbjct: 84 LYIFVPDPTVGFLPNDAEELFIFLTEI 110
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 55.1 bits (132), Expect = 2e-10
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+C + NP +++ +DGT G + G Y+C+A +
Sbjct: 203 QTPMCQAWGNPLPELKCLKDGTFPLPIGES-------------VTVTRDLEGTYLCRARS 249
Query: 71 NLGSSQQFIQLS 82
G + + ++
Sbjct: 250 TQGEVTREVTVN 261
Score = 34.3 bits (78), Expect = 0.005
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 11 AEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
++C++ P +V + S K S+ V +D C
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCA 79
Query: 68 ASNNLGSSQQFIQLS 82
S + ++
Sbjct: 80 VILGNQSQETLQTVT 94
Score = 34.3 bits (78), Expect = 0.006
Identities = 5/67 (7%), Positives = 17/67 (25%), Gaps = 12/67 (17%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C + + + LL++ + + ++ C A+
Sbjct: 115 EVTVKCEAHPRAKVTLNGVPAQP------------LGPRAQLLLKATPEDNGRSFSCSAT 162
Query: 70 NNLGSSQ 76
+
Sbjct: 163 LEVAGQL 169
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 55.0 bits (132), Expect = 3e-10
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
A+I+C+ + G I L + + +L + + D G Y
Sbjct: 202 EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261
Query: 66 CQASNNLGSSQQFIQLS 82
C ASN++G+ +
Sbjct: 262 CVASNDVGTRTATMNFQ 278
Score = 50.3 bits (120), Expect = 2e-08
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A + C + V R+G L ++ S ++R K D Y+C+
Sbjct: 107 AVLPCLITDPALKDSVSLMREGGRQVLRKT--VYFFSPWRGFIIRKAKVLDSNTYVCKTM 164
Query: 70 NNLGSSQ-QFIQL---SGIPNIPVFQKSSRRL 97
N S I L P P + +L
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKL 196
Score = 36.5 bits (84), Expect = 9e-04
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C VEW + + S +L R+ + G Y C
Sbjct: 21 TVTLRCVS----NGSVEWDGPISP-----YWTLDPESPGSTLTTRNATFKNTGTYRCTEL 71
Query: 70 NNLGSSQQFIQLS 82
+ + I L
Sbjct: 72 EDPMAGSTTIHLY 84
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 54.7 bits (131), Expect = 4e-10
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 9 MRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE-------KHSLLVRHIKDTD 60
++C + + W + ++ + + +L + + D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Query: 61 FGNYMCQASNNLGSSQQFIQL 81
G +MC A+N GS+ L
Sbjct: 264 SGVFMCYANNTFGSANVTTTL 284
Score = 44.7 bits (105), Expect = 1e-06
Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 8/108 (7%)
Query: 4 ITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
D A + C + ++ DG ++ + + + +
Sbjct: 102 FGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITIKNVKRAYHRL 159
Query: 63 NYMCQASNNLG---SSQQFIQLSGIPNIP--VFQKSSRRLGPDGYRLV 105
C A + S + +++ V + L G
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207
Score = 38.6 bits (89), Expect = 2e-04
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C P V W + V ++K+ + + T G Y C S
Sbjct: 29 TLSLTCID----PDFVRWTFKT-------YFNEMVENKKNEWIQEKAEATRTGTYTCSNS 77
Query: 70 NNLGSSQQ-FIQLSGIPNIP 88
N L SS F++ +
Sbjct: 78 NGLTSSIYVFVRDPAKLFLV 97
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 53.9 bits (129), Expect = 4e-10
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 17/86 (19%)
Query: 14 ICNVYANPPAKVEWFRDGTAIT-----------------LGGRIDMHVSSEKHSLLVRHI 56
V P +V WF+ G G D+H S+ L+V
Sbjct: 15 WRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 74
Query: 57 KDTDFGNYMCQASNNLGSSQQFIQLS 82
+ GNY+C+ + LS
Sbjct: 75 NISHDGNYLCRMKLGETEVTKQEHLS 100
Score = 50.4 bits (120), Expect = 8e-09
Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 4/71 (5%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITL----GGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
+ C V A P V+W G + + +
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVT 180
Query: 66 CQASNNLGSSQ 76
C N+ +
Sbjct: 181 CVGKNDKEEAH 191
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 53.8 bits (129), Expect = 4e-10
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 18/105 (17%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 53
E+ C + W LG R D S L++
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 54 RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSSRRL 97
+++K D Y+C+ + Q L+ + + Q S L
Sbjct: 73 KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 117
Score = 52.7 bits (126), Expect = 9e-10
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ V+ GG+ +L V ++ D G + C
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 164
Query: 71 NLGSSQQFIQLSGIPNIPVFQKSS 94
N + I + + FQK+S
Sbjct: 165 NQKKVEFKIDIV----VLAFQKAS 184
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 52.7 bits (126), Expect = 1e-09
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ A ++W + ++ L R M +S L + IK D G Y C+ SN + +
Sbjct: 136 DIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190
Score = 35.8 bits (82), Expect = 0.001
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 19/99 (19%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-----------------HSLLVRHIK 57
+ W++ T + I V + SLL + I
Sbjct: 21 VHNLPLALGAFAWYKGNT-TAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT 79
Query: 58 DTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSR 95
D G Y ++ Q ++ +
Sbjct: 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT 118
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 53.3 bits (127), Expect = 1e-09
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 6 APDMRAEIICNVY----ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS----------L 51
P I C VY + +V W DG S HS L
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298
Query: 52 LVRHIKDTDFG-NYMCQASNNLGSSQQFIQLSGIPNIPVF 90
++ + D +Y+C A + G + ++ P +
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRY 338
Score = 51.4 bits (122), Expect = 8e-09
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-----HVSSEKHSLLVRHIKDTD 60
+ + + + + W+ L I+ +S EK L R D
Sbjct: 31 LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90
Query: 61 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSR 95
GNY C N S+ L + F +
Sbjct: 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMK 125
Score = 48.7 bits (115), Expect = 5e-08
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
++ + W+ I + E +L ++ GNY C +
Sbjct: 147 GYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLSFLIALISNNGNYTCVVTYPENG 202
Query: 75 SQ 76
Sbjct: 203 RT 204
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 51.8 bits (123), Expect = 2e-09
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C Y P +++ W + I S E H L + G Y+C
Sbjct: 130 TVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 70 NNLGSSQQF 78
+ F
Sbjct: 188 GSKPEDANF 196
Score = 42.6 bits (99), Expect = 6e-06
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 10/85 (11%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C+ + WF+DG I + L + KD G Y C+ S N
Sbjct: 25 CDA---EAKNITWFKDGKMIGFLTEDKKKWN------LGSNAKD-PRGMYQCKGSQNKSK 74
Query: 75 SQQFIQLSGIPNIPVFQKSSRRLGP 99
Q G + + +
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAK 99
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.0 bits (119), Expect = 3e-09
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 12/83 (14%)
Query: 11 AEIICNVYANPPAK---VEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 58
V K V+WF+ G + L D L + +
Sbjct: 22 ITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81
Query: 59 TDFGNYMCQASNNLGSSQQFIQL 81
G+Y C+ S L
Sbjct: 82 AFTGSYRCEVSTKDKFDCSNFNL 104
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 51.5 bits (123), Expect = 3e-09
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR---HIK 57
+ + E+ C P A+V W + G + E+ V I
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN 183
Query: 58 DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRR 96
T + C +L IP +P+ + R
Sbjct: 184 TTTNEIFYCTFRRLDPEENHTAELV-IPELPLAHPPNER 221
Score = 30.0 bits (67), Expect = 0.18
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 24/94 (25%)
Query: 11 AEIICNVYANPPA-----KVEWFRDGTAITL---------------GGRIDM---HVSSE 47
I C V W + I R + +S
Sbjct: 19 MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLG 78
Query: 48 KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81
+L + +K D G Y C S G+ + I +
Sbjct: 79 NAALQITDVKLQDAGVYRCMISYG-GADYKRITV 111
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 52.1 bits (124), Expect = 3e-09
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 18/102 (17%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 53
E+ C + W LG R D S L++
Sbjct: 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71
Query: 54 RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSS 94
+++K D Y+C+ + Q L+ + + Q S
Sbjct: 72 KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQS 113
Score = 51.3 bits (122), Expect = 7e-09
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 10/88 (11%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ V+ GG+ +L V ++ D G + C
Sbjct: 114 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 163
Query: 71 NLGSSQQFIQLSGIPNIPVFQKSSRRLG 98
N + I + + ++ G
Sbjct: 164 NQKKVEFKIDIVVLAFQKASSIVYKKEG 191
Score = 38.2 bits (88), Expect = 3e-04
Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 4/66 (6%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQASNNLGSS 75
+ ++ + +K +L + GN G
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL 283
Query: 76 QQFIQL 81
Q + L
Sbjct: 284 HQEVNL 289
Score = 34.4 bits (78), Expect = 0.005
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 4 ITAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
+ A ++ + C V+ K+ + + R + + +
Sbjct: 292 MRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEA 340
Query: 62 GNYMCQASNN 71
G + C S++
Sbjct: 341 GMWQCLLSDS 350
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 52.0 bits (125), Expect = 5e-09
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 9 MRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
+ +C +PP + W ++ + V + +L VR+ + D G Y+C
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTLEVRYAQVQDNGTYLCI 459
Query: 68 ASNNLGSSQQFIQL 81
A+N G+ L
Sbjct: 460 AANAGGNDSMPAHL 473
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 51.1 bits (122), Expect = 5e-09
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 15 CNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH---------SLLVRHIKDTDFGNY 64
C + P +V W RDG + L V + L + ++ +D G Y
Sbjct: 24 CQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQY 83
Query: 65 MCQASNNLG---SSQQFIQLSGIPNI 87
C S ++ L G+P
Sbjct: 84 QCLVFLGHQTFVSQPGYVGLEGLPYF 109
Score = 49.9 bits (119), Expect = 1e-08
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 6 APDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
A + + C P P + W +D + + SL V + T ++
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLNKT--SSF 171
Query: 65 MCQASNNLGSSQ 76
C+A N G +
Sbjct: 172 SCEAHNAKGVTT 183
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 51.1 bits (122), Expect = 8e-09
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 11 AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C+ + + V ++R+G A +L + + G Y C
Sbjct: 100 LALRCHAWKDKLVYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCSGM 151
Query: 70 NNLG--SSQQFIQLSGIPNIPVFQKSS 94
S+ + + + PV S
Sbjct: 152 GKHRYTSAGISVTVKELFPAPVLNASV 178
Score = 46.1 bits (109), Expect = 4e-07
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C V P + +WF +GTA + S + D G Y CQ +
Sbjct: 23 CEVLHLPGSSSTQWFLNGTAT----------QTSTPSYRITSASVNDSGEYRCQRGLSGR 72
Query: 74 SSQQFIQLSGIPNIPVFQKS 93
S +++ +
Sbjct: 73 SDPIQLEIHRGWLLLQVSSR 92
Score = 36.4 bits (84), Expect = 9e-04
Identities = 7/73 (9%), Positives = 18/73 (24%), Gaps = 13/73 (17%)
Query: 10 RAEIICNVYANPPA-----KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
+ C ++ + + + + D G Y
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTL--------RGRNTSSEYQILTARREDSGLY 238
Query: 65 MCQASNNLGSSQQ 77
C+A+ G+ +
Sbjct: 239 WCEAATEDGNVLK 251
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 49.8 bits (119), Expect = 9e-09
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C +P ++WF +G I + + D G Y CQ
Sbjct: 26 CQGARSPESDSIQWFHNGNLI----------PTHTQPSYRFKANNNDSGEYTCQTGQTSL 75
Query: 74 SSQQFIQLSGIPNIPV 89
S + + +
Sbjct: 76 SDPVHLTVLFEWLVLQ 91
Score = 47.1 bits (112), Expect = 8e-08
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 11 AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C+ + + P KV +F++G + S + + + G+Y C +
Sbjct: 103 IMLRCHSWKDKPLVKVTFFQNGKSQ--------KFSHLDPTFSIPQANHSHSGDYHCTGN 154
Query: 70 NNLGSSQ 76
Sbjct: 155 IGYTLFS 161
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 51.0 bits (122), Expect = 1e-08
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
I C+ KV + G + VS L + ++ D G Y C A
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLFFKKVQVEDGGVYTCYAMG 322
Query: 71 NLGSSQQFIQL 81
+ ++L
Sbjct: 323 ETFNETLSVEL 333
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 49.1 bits (117), Expect = 2e-08
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
CN + +WF +G+ SL + + K D G Y CQ
Sbjct: 26 CNGNNFFEVSSTKWFHNGSLS----------EETNSSLNIVNAKFEDSGEYKCQHQQVNE 75
Query: 74 SSQQFIQLSGIPNI------PVFQKSSRRL------GPDGYRLVW 106
S ++++ + V + L D Y++++
Sbjct: 76 SEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY 120
Score = 45.3 bits (107), Expect = 5e-07
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 11 AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C+ + N KV +++DG A+ E H++ + + D G Y C
Sbjct: 103 LFLRCHGWRNWDVYKVIYYKDGEAL--------KYWYENHNISITNATVEDSGTYYCTGK 154
Query: 70 NNLGSSQ 76
+
Sbjct: 155 VWQLDYE 161
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 48.5 bits (115), Expect = 2e-08
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 2 HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMH------VSSE 47
S E+ C +P +++W+ +G G R+D
Sbjct: 29 LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88
Query: 48 KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
++ + + + D G Y C+ASN+ +
Sbjct: 89 ASTISIDTLVEEDTGTYECRASNDPDRNH 117
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 47.5 bits (113), Expect = 3e-08
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHI-----KDTDFGN 63
A + C P +EW++ G + + SL I D G
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 64 YMCQASNNLGSS 75
Y+C A N LG +
Sbjct: 87 YVCVARNYLGEA 98
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 47.9 bits (114), Expect = 5e-08
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C +P +WF + + I SS+ S + D G Y CQ + +
Sbjct: 29 CQGAYSPEDNSTQWFHNESLI----------SSQASSYFIDAATVNDSGEYRCQTNLSTL 78
Query: 74 SSQQFIQLSGIPNIPV 89
S +++ +
Sbjct: 79 SDPVQLEVHIGWLLLQ 94
Score = 43.3 bits (102), Expect = 2e-06
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 15 CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C+ + N KV + ++G + D G+Y C+
Sbjct: 110 CHSWKNTALHKVTYLQNGKDR--------KYFHHNSDFHIPKATLKDSGSYFCRGLVGSK 161
Query: 74 S 74
+
Sbjct: 162 N 162
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 46.9 bits (111), Expect = 7e-08
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 11 AEIICNVYANPPA---KVEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 58
I V A ++WF+ G + L + H + + KD
Sbjct: 25 ITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84
Query: 59 TDFGNYMCQASNNLGSSQQFIQL------SGIPNIPVFQKS 93
GNY C+ + L PNI S
Sbjct: 85 NFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 48.0 bits (113), Expect = 1e-07
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 21/93 (22%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH--------------------- 49
+ C A V W+ T + K+
Sbjct: 154 ITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR 213
Query: 50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+L++R K TD G C+ + G +
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Score = 33.3 bits (75), Expect = 0.011
Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 40/125 (32%)
Query: 11 AEIICNVYA---NPPAKVEWFRDGTAITLGGRIDMH------------------------ 43
E+ C+ P + W + + +
Sbjct: 20 VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFL 79
Query: 44 -----VSSEKHSLLVRHIKDTDFGNYMCQASNNLGS--------SQQFIQLSGIPNIPVF 90
+ +L + H+ D G Y CQ + S P+ V
Sbjct: 80 GRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH 139
Query: 91 QKSSR 95
++
Sbjct: 140 VSTAE 144
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 47.2 bits (112), Expect = 1e-07
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
I+ + + C V ++ ++DG + L R ++ +
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSA 158
Query: 63 NYMCQASNNLGSSQQFIQLS 82
+ C A N + +S
Sbjct: 159 KFKCTAGNKVSKESSVEPVS 178
Score = 37.9 bits (88), Expect = 2e-04
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
S D +I ++ ++ ++ + + +L ++H+K D
Sbjct: 22 PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQ 78
Query: 62 GNYMCQASNNLGSS 75
Y + G +
Sbjct: 79 DIYKVSIYDTKGKN 92
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 46.4 bits (110), Expect = 2e-07
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C +P +WF + + I SS+ S + D G Y CQ +
Sbjct: 29 CQGAYSPEDQSTQWFHNESLI----------SSQASSYFIDAATVDDSGEYRCQTQLSTL 78
Query: 74 SSQQFIQLSGIPNIPV 89
S +++ +
Sbjct: 79 SDPVQLEVHIGWLLLQ 94
Score = 44.9 bits (106), Expect = 8e-07
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 15 CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C+ + N KV + ++G + D G+Y C+
Sbjct: 110 CHSWKNTALHKVTYLQNGKGR--------KYFHHNSDFYIPKATLKDSGSYFCRGLVGSK 161
Query: 74 ---SSQQFIQLSGIPNIPV 89
S I ++ +
Sbjct: 162 NVSSETVQITITQGLAVST 180
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 46.3 bits (109), Expect = 3e-07
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 10/83 (12%)
Query: 10 RAEIICNVYANPPAKVE--WFRDGTAITLGGRI--------DMHVSSEKHSLLVRHIKDT 59
+ + C ++ W + + + +L + + +
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D G Y C AS+ L + + +
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVR 204
Score = 40.5 bits (94), Expect = 3e-05
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 3/86 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
I C + V + K + + G C+A
Sbjct: 27 VVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKI 85
Query: 71 NLGS--SQQFIQLSGIPNIPVFQKSS 94
N S S +I + I S
Sbjct: 86 NDESYQSIMYIVVVVGYRIYDVVLSP 111
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 46.3 bits (110), Expect = 4e-07
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 9 MRAEIICNVYANPPAKVEWFRDG----TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
AE+ C P + V+W + + RI + +L H+ +D G Y
Sbjct: 368 RMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG---TLNFSHVLLSDTGVY 422
Query: 65 MCQASNNLGSSQQFIQL 81
C +N G+S L
Sbjct: 423 TCMVTNVAGNSNASAYL 439
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 44.1 bits (104), Expect = 5e-07
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRID---------MHVSSEKHSLLVRHIKDTDF 61
A + C V N ++W + S + S+ V + +D
Sbjct: 24 AILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE 83
Query: 62 GNYMCQASNNLGSSQQ 77
G Y C + +
Sbjct: 84 GQYTCSLFTMPVKTSK 99
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 46.3 bits (109), Expect = 5e-07
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 8/128 (6%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS---LLVRHIKDTDFGN 63
A C+ A + G + ++ V+S + V + D G
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 64 YMCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYSAIIQYL 118
Y C G S + P +P+ +G + ++ I+
Sbjct: 238 YRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVARE 297
Query: 119 LKFREREG 126
+++ G
Sbjct: 298 VEYCTASG 305
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 44.6 bits (105), Expect = 5e-07
Identities = 13/106 (12%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 1 MHSITAPD-MRAEIICNVYANPPAKVEWFR--------DGTAITLGGRIDM-HVSSEKHS 50
+IT + + C + ++W + + + + H S+ + S
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67
Query: 51 LLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSGIPNIPVFQKSSR 95
+ V ++ D G Y C ++ + + + + + + S
Sbjct: 68 ITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH 113
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.9 bits (109), Expect = 6e-07
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 9 MRAEIICNVYANPPAKVEWFR-DGTAIT---LGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
M AE+ C + V W +GT +T RI + +L ++ D G Y
Sbjct: 357 MAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG---TLNFTNVTVQDTGMY 412
Query: 65 MCQASNNLGSSQQFIQL--SGIPN 86
C SN++G++ L +G +
Sbjct: 413 TCMVSNSVGNTTASATLNVTGTHH 436
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 43.6 bits (102), Expect = 1e-06
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 10/83 (12%)
Query: 10 RAEIICNVYANPPAKVE--WFRDGTAITLGGRI--------DMHVSSEKHSLLVRHIKDT 59
+ + C ++ W + + + +L + + +
Sbjct: 25 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 84
Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
D G Y C AS+ L + + +
Sbjct: 85 DQGLYTCAASSGLMTKKNSTFVR 107
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 43.2 bits (101), Expect = 2e-06
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 29/101 (28%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAIT-----------------------------LGGRID 41
+ + +P V W + T GR+
Sbjct: 36 LRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVR 95
Query: 42 MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ + ++ V + D G Y N +G Q + +
Sbjct: 96 VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 43.1 bits (101), Expect = 4e-06
Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLG------GRIDM---HVSSEKHSLLVRHIKDTDF 61
+ C+ ++E R R + + K + ++ D
Sbjct: 20 VSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDS 79
Query: 62 GNYMCQASNNLGSSQQFIQLSGIPNIP-VFQKSSRRLGPDGYRL 104
G Y C +++ + + + + G +L
Sbjct: 80 GQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Score = 40.0 bits (93), Expect = 4e-05
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
++ C P A+V W + S+L +K N+ C
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLR--LKPQPSRNFSCM 175
Query: 68 ASNNLGSSQQFIQLSGIPNIPVF 90
N + + +
Sbjct: 176 FWNAHMKELTSAIIDPLSRMEPK 198
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 43.2 bits (101), Expect = 4e-06
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C+ W R L G++ ++ +L + + + +Y+C A+
Sbjct: 19 VSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTT--STLTMNPVSFGNEHSYLCTATC 75
Query: 71 NLGSSQQFIQL 81
++ IQ+
Sbjct: 76 ESRKLEKGIQV 86
Score = 40.9 bits (95), Expect = 2e-05
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 10 RAEIICNVYANPPA---KVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFG- 62
+ C+V P +++ + + D K + D G
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 63 NYMCQASNNLGSSQ 76
+C+A ++
Sbjct: 168 VLVCRAKLHIDEMD 181
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 41.9 bits (98), Expect = 7e-06
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 11/73 (15%)
Query: 3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
I A + C V +++ ++ + + M
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------A 153
Query: 63 NYMCQASNNLGSS 75
+ C+A N +
Sbjct: 154 PFKCKAVNRVSQE 166
Score = 39.9 bits (93), Expect = 5e-05
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 25 VEWFRDGTAI-TLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSS-- 75
V W R T + ++ + S L ++++ D G Y + G+
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89
Query: 76 QQFIQLSGIPNIP 88
+ + L + +
Sbjct: 90 NKALDLRILEMVS 102
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 42.5 bits (99), Expect = 7e-06
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 3 SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH------------ 49
S+ + CN NP K+ W+R+G + + ++
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
Query: 50 -SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 90
+L +R KD ++ C A +L + S ++ +
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 34.4 bits (78), Expect = 0.005
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 24/113 (21%)
Query: 11 AEIICNVYANPPAK-VEWFR---DGTAITL-----------------GGRIDMHVSSEKH 49
+ C +EWF G L GR + +
Sbjct: 18 VILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG 77
Query: 50 SLLVRHIKDTDFGNYMCQA-SNNLGSSQQFIQLS--GIPNIPVFQKSSRRLGP 99
L++ + D +Y+C + G+++ +L+ P + L
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSV 130
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.6 bits (94), Expect = 1e-05
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 12/84 (14%)
Query: 11 AEIICNVYANPPAK---VEWFRD---GTAITLGGRIDMHVSSEKHS------LLVRHIKD 58
A ++ V ++WF+ G R S S L + +
Sbjct: 30 AVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL 89
Query: 59 TDFGNYMCQASNNLGSSQQFIQLS 82
D G Y + +
Sbjct: 90 GDRGYYRLEVKAKDTCDSCGFNID 113
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 41.9 bits (97), Expect = 1e-05
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 15 CNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASNN 71
C + V G A GRI ++ + S+++ ++ D G Y+C A ++
Sbjct: 253 CRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD 312
Query: 72 LGSSQQFIQLSGIPNIPVFQKSSR 95
+ + + R
Sbjct: 313 GQLQEGSPIQAWQLFVNEESTIPR 336
Score = 37.7 bits (86), Expect = 4e-04
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD---TDFGNYMCQA 68
+ + P V GRI + + L I +D G Y+CQA
Sbjct: 145 KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204
Query: 69 SNNLGSSQQFIQ 80
++ S+++
Sbjct: 205 GDDSNSNKKNAD 216
Score = 35.0 bits (79), Expect = 0.004
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 8/95 (8%)
Query: 9 MRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHIKDTDF 61
+ C + +W G ++ +S SL + + D
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521
Query: 62 GNYMCQASNNLGSSQQF-IQLSGIPNIPVFQKSSR 95
G Y C + + ++ +
Sbjct: 522 GWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVS 556
Score = 35.0 bits (79), Expect = 0.004
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 16/93 (17%)
Query: 17 VYANPPAKVEWFRDGTAITL--------------GGRIDMHVSSEKHSLLVR--HIKDTD 60
N + W R G GR ++ E + +V + D
Sbjct: 27 TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86
Query: 61 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS 93
G Y C N + L + +
Sbjct: 87 SGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDT 119
Score = 30.4 bits (67), Expect = 0.15
Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 21/112 (18%)
Query: 10 RAEIICNVYANPPAKVEWF-----------------RDGTAITLGGR--IDMHVSSEKHS 50
++C ++++ GR + + +
Sbjct: 348 SVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407
Query: 51 LLVRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPD 100
+++ + D G Y C + + ++ + + G PN+ V + LG
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET 459
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 41.8 bits (97), Expect = 1e-05
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 16 NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
N+ + + FR+ +T +S S+ ++ +K++D G Y C S
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTG------DISRNDGSIKLQTVKESDQGIYTCSIYVGKLES 227
Query: 76 QQFIQLSGIPNIPVF 90
++ I L + +
Sbjct: 228 RKTIVLHVVQDEFQR 242
Score = 37.5 bits (86), Expect = 4e-04
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 11 AEIICNVYA---NPPAKVEWFRDGTAITLGGRIDMHVSSEKH------------------ 49
+ C V +V+W + + S+
Sbjct: 23 VLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHN 82
Query: 50 --SLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNIPVFQK 92
SLL++ ++ D G Y C+ S ++L +P P +
Sbjct: 83 DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR 129
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.6 bits (92), Expect = 2e-05
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDT 59
A ++ WF +G + R + +H L++ +K
Sbjct: 25 DAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82
Query: 60 DFGNYMCQASNNLGSS 75
D G + + + S
Sbjct: 83 DSGALVGFSCPGVQDS 98
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 40.2 bits (93), Expect = 3e-05
Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 1 MHSITAPDMR-AEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDM-HVSSEKHS 50
T + C V + + ++W RI + + + S
Sbjct: 45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS 104
Query: 51 LLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ + ++ D G Y C +
Sbjct: 105 ISISNVALADEGEYTCSIFTMPVRTA 130
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 40.6 bits (94), Expect = 3e-05
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
+ C + ++W +DG+ I+ +++ K++ + + G Y CQ +
Sbjct: 127 LTCGLTDKT---IKWLKDGSIIS-------PLNATKNTWNLGNNAKDPRGTYQCQGAKET 176
Query: 73 GSSQQ 77
+ Q
Sbjct: 177 SNPLQ 181
Score = 34.8 bits (79), Expect = 0.003
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQASN 70
E+ C + ++ ++W ++G + L+++ + D G Y+C
Sbjct: 18 ELTCPLDSDEN--LKWEKNGQELP---------QKHDKHLVLQDFSEVEDSGYYVCYTPA 66
Query: 71 NLGSS 75
+ ++
Sbjct: 67 SNKNT 71
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 38.9 bits (90), Expect = 5e-05
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 11 AEIICNVYANP--PAKVEWFRDGTAI--------TLGGRIDMHVSSEKHSLLVRHIKDTD 60
C+ ++ P W D A+ + L +R+++ T
Sbjct: 28 VSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS 87
Query: 61 FGNYMCQASNNLGSSQ 76
G Y C SN+ GSS
Sbjct: 88 EGXYQCVISNHFGSSY 103
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 39.1 bits (90), Expect = 1e-04
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 9/115 (7%)
Query: 15 CN-VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
C V A V W A + LL+R ++ D GNY C +
Sbjct: 28 CPGVEPEDNATVHWVLRKPAAGSHPS---RWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA 84
Query: 74 SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSAIIQYLLKFREREG 126
+ L +P R+ W + +L R+ +
Sbjct: 85 GTVHL--LVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSL-TTKAVLLVRKFQN 136
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 38.3 bits (89), Expect = 2e-04
Identities = 6/68 (8%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C V +++ ++ + + M + C+A N +
Sbjct: 122 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APFKCKAVNRVSQ 170
Query: 75 SQQFIQLS 82
+ ++
Sbjct: 171 ESEMEVVN 178
Score = 37.6 bits (87), Expect = 3e-04
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 25 VEWFRDGTAITLGGRID--MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79
+E+F +G + + +L + ++ D G+Y + + +
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKIT 99
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 38.3 bits (88), Expect = 2e-04
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 14/65 (21%)
Query: 15 CNVYANPPAK----VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
V + P W +D + +L V + G+Y +
Sbjct: 24 ATVAGDEPLPSNLTYTWTKDDQPHE----------NNTATLTVADATSENAGSYKVTVQD 73
Query: 71 NLGSS 75
+
Sbjct: 74 TDTMT 78
Score = 34.8 bits (79), Expect = 0.003
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 20 NPPAKVEWF--RDGTAITL------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
N K W+ R+G G ++ + L D + C A
Sbjct: 221 NLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLY 280
Query: 72 LGSSQQFIQLSG 83
+ ++++
Sbjct: 281 QQIEDETVEVAA 292
Score = 32.9 bits (74), Expect = 0.017
Identities = 6/58 (10%), Positives = 11/58 (18%), Gaps = 11/58 (18%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
N W + I + ++ G Y + S
Sbjct: 126 DNYELHYSWSKGEDVI-----------DTTQDITIQEFTADKNGVYTVKVWGESEDSA 172
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 38.2 bits (87), Expect = 3e-04
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80
A+V W + + + +LL+ ++ + D G Y C + ++ Q
Sbjct: 560 NLARVFWKFQNGVLKA--ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEER-VKNKTVFQ 616
Query: 81 LS 82
+
Sbjct: 617 VV 618
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 37.9 bits (87), Expect = 3e-04
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 7 PDMRAEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
+ C V P V R L + +E + ++ N
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGAN 156
Query: 64 YMCQASNNLGS 74
+ C+ +L
Sbjct: 157 FSCRTELDLRP 167
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 37.3 bits (85), Expect = 5e-04
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
+ A W + S L + ++ +G+Y C+A
Sbjct: 526 SRHATYSWRHKENVEQ---SCEPGHQSPNCILFIENLTAQQYGHYFCEAQEG 574
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 36.6 bits (83), Expect = 9e-04
Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 9/88 (10%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
+ W D + V +L ++ + D G Y C + S
Sbjct: 30 TPEEDGITWTLDQS---------SEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL 80
Query: 79 IQLSGIPNIPVFQKSSRRLGPDGYRLVW 106
+ I + P +
Sbjct: 81 LLHKKEDGIWSTDILKDQKEPKNKTFLR 108
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 16/99 (16%)
Query: 11 AEIICNVYANPPAK---VEWFRDGTAI-TLGGRIDMHVSSEKH---------SLLVRHIK 57
+ C+ ++ A+ V W + + + H+S L ++ +
Sbjct: 21 IILQCH-LSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLT 79
Query: 58 DTDFGNYMCQ-ASNNLGSSQQFIQLSGIPNIPVFQKSSR 95
D G Y C + G+ I L + V + +R
Sbjct: 80 VNDTGEYFCIYHTYPDGTYTGRIFLE-VLESSVAEHGAR 117
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 35.4 bits (81), Expect = 0.002
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 7/91 (7%)
Query: 10 RAEIICNVYANPPA---KVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNY 64
+ C V P + R + + V ++ N+
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANF 165
Query: 65 MCQASNNLGSS--QQFIQLSGIPNIPVFQKS 93
C+A +L F S + F S
Sbjct: 166 SCRAELDLRPHGLGLFENSSAPRELRTFSLS 196
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 35.5 bits (81), Expect = 0.002
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 7 PDMRAEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
+ + C V P V R L + +E + ++
Sbjct: 100 VGKQLTLRCQVEGGAPRAQLTVVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGAQ 156
Query: 64 YMCQASNNLGS 74
+ C+ +L
Sbjct: 157 FSCRTELDLRP 167
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 34.6 bits (79), Expect = 0.003
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 17/106 (16%)
Query: 20 NPPAKVEWFRDGTAI---------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
+ W + T++ T + ++ +SL + ++K D G+Y
Sbjct: 26 EKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSY 85
Query: 65 MCQASNNLGSSQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQV 108
Q S + L + S+ L
Sbjct: 86 RAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Score = 31.1 bits (70), Expect = 0.067
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 12/69 (17%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNLG 73
A+ W G + S + +L V + + +Y C A N +
Sbjct: 132 SVEDADDNVSFRWEALG-----------NTLSSQPNLTVSWDPRISSEQDYTCIAENAVS 180
Query: 74 SSQQFIQLS 82
+ +
Sbjct: 181 NLSFSVSAQ 189
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.0 bits (77), Expect = 0.003
Identities = 10/58 (17%), Positives = 17/58 (29%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
P +++ W + I S E H L + G Y+C +
Sbjct: 30 QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 34.7 bits (79), Expect = 0.004
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 1 MHSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHI 56
+ C PPA++ W D + ++ +S + ++
Sbjct: 124 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPS 183
Query: 57 KDTDFGNYMCQASN 70
D C+ +
Sbjct: 184 SQVDGKQVTCKVEH 197
Score = 32.7 bits (74), Expect = 0.020
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 26/121 (21%)
Query: 11 AEIICNVYANPPA-----KVEWFRDGTAITL------------------GGRIDMHVSSE 47
+ C + ++ W R G + ++ +
Sbjct: 17 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 76
Query: 48 KHSLLVRHIKDTDFGNYMCQ-ASNNLGSSQQFIQLS--GIPNIPVFQKSSRRLGPDGYRL 104
SL + ++ D G+Y C + GS I L P + + G
Sbjct: 77 DASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 136
Query: 105 V 105
Sbjct: 137 R 137
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 34.5 bits (78), Expect = 0.004
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
A+ A V+W T +LG + + + L VR+ + G +C S + Q
Sbjct: 34 ADRGASVQWRGLDT--SLGA---VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 88
Query: 79 IQLS--GIPNIPVFQKS 93
+QL PN +
Sbjct: 89 VQLLVYAFPNQLTVSPA 105
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 32.7 bits (74), Expect = 0.015
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
AKV + + I G + MH+ + + ++D D G Y Q + +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHST 125
Query: 79 IQLSG 83
+ L G
Sbjct: 126 LVLIG 130
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 32.9 bits (75), Expect = 0.015
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ + +G+ + R K + + G Y C S+
Sbjct: 30 GAVEYQLHFEGSLFAVD-RPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 84
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 32.6 bits (74), Expect = 0.020
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ + +G+ + R K + + G Y C S+
Sbjct: 33 GAVEYQLHFEGSLFAVD-RPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 87
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 32.1 bits (73), Expect = 0.026
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ ++ + R + K + + + G Y C + +G SQ
Sbjct: 31 EAREYRLDKEESPAPWD-RQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQ 85
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 31.8 bits (72), Expect = 0.032
Identities = 5/68 (7%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
C V +++ ++ + + + C+A N +
Sbjct: 112 CEVLEGTDVELKLYQGKE-----------HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160
Query: 75 SQQFIQLS 82
+ ++
Sbjct: 161 ESEMEVVN 168
Score = 31.8 bits (72), Expect = 0.035
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 20 NPPAKVEWFRDGTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
P +V W + + + R+ + S SL + ++ +D Y +
Sbjct: 21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS--GSLTIYNLTSSDEDEYEME 78
Query: 68 ASNNLGSSQ 76
+ N + +
Sbjct: 79 SPNITDTMK 87
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 31.6 bits (71), Expect = 0.043
Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 23/118 (19%)
Query: 11 AEIICNVYANPPAK---VEWFRDGT-----------------AITLGGRIDMHVSSEKH- 49
A++ C+++ A+ ++W + GR +
Sbjct: 22 ADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAG 81
Query: 50 --SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
+L + ++ +D G Y+C + + ++L + G L
Sbjct: 82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLE 139
Score = 30.4 bits (68), Expect = 0.10
Identities = 8/82 (9%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
P +++W + + + ++ ++ + C ++L +
Sbjct: 147 PQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI--MRGSSGEGVSCTIRSSLLGLE 204
Query: 77 QFIQLSGIPNIPVFQKSSRRLG 98
+ +S I + P F+ +
Sbjct: 205 KTASIS-IAD-PFFRSAQHHHH 224
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 31.0 bits (70), Expect = 0.074
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ ++G+ + K + + + G Y C + G S+
Sbjct: 31 EAQEYRLVKEGSPEPWD-TQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSE 85
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.8 bits (69), Expect = 0.085
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSRRLG--------- 98
SL + I+ + G Y C+ +Q +QL P +
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCES 142
Query: 99 ----PDGYRLVWQVD 109
P+ + W+
Sbjct: 143 SGFYPEAINITWEKQ 157
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 30.3 bits (68), Expect = 0.096
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 6/61 (9%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
P + W +G + + S L T ++MC
Sbjct: 135 PEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD--FNMTTNHSFMCLIKYGHLRVN 192
Query: 77 Q 77
Q
Sbjct: 193 Q 193
Score = 26.1 bits (57), Expect = 3.1
Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 25 VEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
+ W ++ + R + S+++ ++ +D G Y C
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYECVVLKYE 88
Query: 73 GSSQQFIQLSGI 84
+ + L+ +
Sbjct: 89 KDAFKREHLAEV 100
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 30.2 bits (67), Expect = 0.12
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 20 NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQ 77
PP W + + + SSE L + + N CQ ++++
Sbjct: 154 GPPLTFSWTGNALSPLDP---ETTRSSE---LTLTPRPEDHGTNLTCQMKRQGAQVTTER 207
Query: 78 FIQLS 82
+QL+
Sbjct: 208 TVQLN 212
Score = 29.0 bits (64), Expect = 0.33
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 19/75 (25%)
Query: 16 NVYANPPAKVEWFRDGTAITLG-----------------GRIDM--HVSSEKHSLLVRHI 56
+ Y++PP V WFRDG GR + V + SL +
Sbjct: 30 SWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA 89
Query: 57 KDTDFGNYMCQASNN 71
+ D G+Y +
Sbjct: 90 RMEDTGSYFFRVERG 104
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.8 bits (66), Expect = 0.13
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 38 GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 84
GR + +L + H+ D G Y CQ + ++ + +
Sbjct: 82 GRAS-VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 127
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.4 bits (66), Expect = 0.14
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 25 VEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79
+E+ + T GR+ + ++ +L + +++ D G Y + + +
Sbjct: 47 LEYNYNSTKTIFESEFKGRVYLEENN--GALHISNVRKEDKGTYYMRVLRETENELKIT 103
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 29.1 bits (65), Expect = 0.18
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 25 VEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF-IQ 80
VEW + GR+ + + +L + ++ D Y+ + G+ Q++ I+
Sbjct: 48 VEWDSRKSKYFESKFKGRV--RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIK 105
Query: 81 LS 82
L
Sbjct: 106 LQ 107
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.4 bits (63), Expect = 0.20
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 17/70 (24%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL-LVRHIKDTDFGNYMCQASNN 71
+ CN + W L S+ L L + I D G Y C ++
Sbjct: 14 VNCNT------SITWVEGTVGTLL---------SDITRLDLGKRILDPR-GIYRCNGTDI 57
Query: 72 LGSSQQFIQL 81
+ +Q+
Sbjct: 58 YKDKESTVQV 67
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 28.8 bits (65), Expect = 0.27
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 6 APDMRAEIICNVYANPPAKVEWFR--DGTA----ITLGGRIDMHVSSEKHSLLVRHIKDT 59
+ C Y N + WFR ++ GRI + ++L +++I+
Sbjct: 30 KRSSMVKFHC--YTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYE 87
Query: 60 DFGNYMCQASNNLGSSQQF 78
D G Y C+ + +
Sbjct: 88 DNGIYFCKQKCDSANHNVT 106
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 28.6 bits (64), Expect = 0.29
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 24/97 (24%)
Query: 10 RAEIICNVYANPPAK-----VEWFRDGTAITL-------------GGRI-----DMHVSS 46
+ C + + W R G + ++ R+ +
Sbjct: 17 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 76
Query: 47 EKHSLLVRHIKDTDFGNYMCQ-ASNNLGSSQQFIQLS 82
SL + ++ D GNY C + GS I L
Sbjct: 77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.4 bits (63), Expect = 0.37
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 38 GRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASN--NLGSSQQFIQLSGIPNIP 88
RI S+++ ++ +D G + C N ++ + L +P
Sbjct: 68 ERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.3 bits (63), Expect = 0.41
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81
S+ V +++ +D G Y C+ G + + I L
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 29.0 bits (64), Expect = 0.43
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 43 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP 99
++E + LL + + + + N+ A N LG S+ + + +
Sbjct: 336 APTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINS 395
Query: 100 DGYRLVWQVDTYSAIIQYLLKFRERE 125
+L W + A I +L + ++
Sbjct: 396 TAVKLSWHLPGNFAKINFLCEIEIKK 421
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 28.8 bits (63), Expect = 0.43
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Query: 18 YANPPAKVEWFRDGTAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASNNLGSS 75
++ ++G D + + ++ G Y+
Sbjct: 221 TPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG 280
Query: 76 QQFIQLS--GIPNIPVFQKSSRRLGPDG 101
Q ++L+ P + + + R P
Sbjct: 281 QVTLELAVYKPPKVSLMPATLARAAPGE 308
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 28.6 bits (64), Expect = 0.45
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 22 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
P V+ +R ++ ++ L + +K + G Y C N S
Sbjct: 32 PPGVDLYRLE-------KLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSL 79
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 28.4 bits (63), Expect = 0.53
Identities = 7/85 (8%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 11 AEIICNV--YANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGN 63
C ++ ++WF++G ++ V + V ++
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194
Query: 64 YMCQASNNLGSSQQFIQLSGIPNIP 88
+C+ ++ + +
Sbjct: 195 VICEVAHVTLQGDPLRGTANLSETI 219
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.0 bits (62), Expect = 0.57
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81
+L +++++ +D G Y C ++ + ++L
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer
cell, HLA, major histocompatibility complex class I
(MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 257
Score = 28.4 bits (63), Expect = 0.58
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 21 PPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
R+G I + H K + + + G Y C S Q
Sbjct: 33 RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQ 89
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 28.3 bits (63), Expect = 0.58
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 38 GRIDMHVS-SEKHSLLVRHIKDT---DFGNYMCQASNNLGSSQQFIQLSGIPNIP----- 88
GR + + EK L HI D+ D Y C AS+N QL PNI
Sbjct: 59 GRFTIFFNKREKKFSL--HIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPA 116
Query: 89 VFQKSSRRLGP 99
V+Q R
Sbjct: 117 VYQLKDPRSQD 127
>1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility
antigen, immune system; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B* 1fng_B*
1ktd_B* 1ieb_B* 1kt2_B* 3o6f_B 3t0e_B
Length = 224
Score = 27.8 bits (62), Expect = 0.90
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 13 IICNVYANPPA--KVEWFRDGTAITLG 37
++C+V P +V WFR+G G
Sbjct: 141 LVCSVSDFYPGNIEVRWFRNGKEEKTG 167
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 27.5 bits (61), Expect = 0.92
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNNLGSSQQ 77
+ +R+ RI +K + I G Y C S+ G S+
Sbjct: 31 ETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSES 87
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 28.0 bits (61), Expect = 0.94
Identities = 9/89 (10%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 43 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP 99
+++E + L V+ + N+ N LG S+ + + +
Sbjct: 341 GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINS 400
Query: 100 DGYRLVWQV--DTYSAIIQYLLKFREREG 126
W + + + ++ +
Sbjct: 401 TVVTFSWYLPGNFTKINLLCQIEICKANS 429
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.98
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 12 EIICNV-YANPPAKVEW--FRDGTAITLGGRIDMHVSSEKHSLLVRHIKD---TDFGNYM 65
E+ C V Y V W T + L R + S + H + D G+Y
Sbjct: 30 ELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYR 89
Query: 66 CQASNNLGS 74
C A+
Sbjct: 90 CSANFQSNL 98
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 26.8 bits (60), Expect = 1.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 46 SEKHSLLVRHIKDT---DFGNYMCQASNNLGSSQQF 78
EK L HI D+ D Y C AS N G+ Q+F
Sbjct: 67 REKKLSL--HIADSQPGDSATYFCAASANSGTYQRF 100
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 1.2
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 42 MHVSSEKHSLLVRHIKDTDFGNYMCQ 67
+H ++L++ ++ D G+Y
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKAD 90
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 27.2 bits (60), Expect = 1.2
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 21 PPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
R+G I + H K + + + G Y C S Q
Sbjct: 34 MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQ 90
>3lqz_B HLA-DP2 beta chain linked with DRA peptide; MHC, immune, disulfide
bond, glycoprotein, immune respo membrane, MHC II,
transmembrane, immune system; HET: NAG NDG; 3.25A {Homo
sapiens}
Length = 212
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 11 AEIICNVYANPPA--KVEWFRDGTAITLG 37
++C+V P +V WF +G T G
Sbjct: 134 NLLVCHVTDFYPGSIQVRWFLNGQEETAG 162
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 27.3 bits (60), Expect = 1.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 99 PDGYRLVWQVDTYSAIIQYLLKFREREG 126
P+ + + W S I +Y+L++R +
Sbjct: 15 PNSHPIQWNAPQPSHISKYILRWRPKNS 42
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 27.1 bits (60), Expect = 1.6
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 11/114 (9%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLGSSQQ-- 77
++G + + + + + G Y C S Q
Sbjct: 145 MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSA 204
Query: 78 -----FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG 126
I ++G P G + + S+ Y L REG
Sbjct: 205 PSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHL---SREG 255
Score = 27.1 bits (60), Expect = 1.8
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+++ H + S + + GNY C+ S+
Sbjct: 50 RFNNFMLYKEDRIHI----PIFHGRIFQESFNMSPVTTAHAGNYTCRGSH 95
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.8 bits (59), Expect = 1.8
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 26 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
++ T +G R+ + ++ H+ G Y CQ +
Sbjct: 42 MIIKNSTYREIGRRLKFW-NETDPEFVIDHMDANKAGRYQCQYRIGHYRFR 91
>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC,
immune system; 3.05A {Triticum aestivum}
Length = 250
Score = 26.7 bits (59), Expect = 2.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 11 AEIICNVYANPPA--KVEWFRDGTAITLG 37
++C+V PA KV WFR+ T G
Sbjct: 146 NLLVCSVTDFYPAQIKVRWFRNDQEETAG 174
>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET:
NAG; 2.60A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 222
Score = 26.7 bits (59), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 13 IICNVYANPPA--KVEWFRDGTAITLG 37
++C+V PA KV WFR+G T+G
Sbjct: 141 LVCSVTDFYPAKIKVRWFRNGQEETVG 167
>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B*
1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D
2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...
Length = 198
Score = 26.6 bits (59), Expect = 2.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 11 AEIICNVYANPPA--KVEWFRDGTAITLG 37
++C+V P KV WFR+ T G
Sbjct: 111 NLLVCSVTDFYPGQIKVRWFRNDQEETAG 139
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 26.1 bits (57), Expect = 2.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 50 SLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLS 82
+L + + D GNY C+ + GS + L
Sbjct: 94 TLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR 127
>4ah2_B HLA class II histocompatibility antigen gamma CHA class II
histocompatibility antigen\,DRB1-1...; MHC II, immune
system, SELF antigen; 2.36A {Homo sapiens}
Length = 229
Score = 25.9 bits (57), Expect = 3.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 11 AEIICNVYANPPA--KVEWFRDGTAITLG 37
++C+V P +V WFR+G G
Sbjct: 144 NLLVCSVSGFYPGSIEVRWFRNGQEEKAG 172
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 25.7 bits (56), Expect = 4.5
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 11 AEIICNV----YANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDF 61
E+ C V + +P K W+ DG + L V H +
Sbjct: 42 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 101
Query: 62 GNYMCQASN 70
Y C+ SN
Sbjct: 102 KEYKCKVSN 110
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 25.6 bits (56), Expect = 4.6
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 11 AEIICNV----YANPPAKVEWFRDGTAITLGG-----RIDMHVSSEKHSLLVRHIKDTDF 61
E+ C V + +P K W+ DG + L V H +
Sbjct: 21 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 80
Query: 62 GNYMCQASNN 71
Y C+ SN
Sbjct: 81 KEYKCKVSNK 90
>2p24_B H-2 class II histocompatibility antigen, A-U beta; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} PDB: 3cup_B* 1es0_B 3rdt_D 1lnu_B* 3c5z_D
3c60_D 3c6l_D
Length = 259
Score = 25.7 bits (56), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 13 IICNVYANPPA--KVEWFRDGTAITLG 37
++C+V PA KV WFR+G T+G
Sbjct: 166 LVCSVTDFYPAKIKVRWFRNGQEETVG 192
>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune
response, membrane, transmembrane, GTP-binding,
methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B
1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B*
2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B
1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...
Length = 190
Score = 25.4 bits (56), Expect = 5.0
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 13 IICNVYANPPA--KVEWFRDGTAITLG 37
++C+V P +V WFR+G G
Sbjct: 115 LVCSVSGFYPGSIEVRWFRNGQEEKTG 141
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 25.1 bits (55), Expect = 5.3
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 27 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
R + + + + +T G+Y C S + S+
Sbjct: 41 MVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSE 90
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 25.1 bits (55), Expect = 5.5
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 27 WFRD--GTA----ITLGGRIDMHV-SSEKH-SLLVRHIKDT---DFGNYMCQASNNLGSS 75
W+R G+ I++GGR V K SL I D D G Y CQA +
Sbjct: 36 WYRTKLGSTNEQSISIGGRYVETVNKGSKSFSL---RISDLRVEDSGTYKCQAFYVFFAE 92
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 24.8 bits (53), Expect = 6.1
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 12 EIICNV-YANPPAKVEW--FRDGTAITLGGRIDMHVSSEKH---SLLVRHIKDT---DFG 62
+I C V Y V W + L ++ S E++ + V H K D G
Sbjct: 33 KIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNG 92
Query: 63 NYMCQASNNLG 73
+Y C + N
Sbjct: 93 SYSCSTNFNSQ 103
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 24.9 bits (54), Expect = 6.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 50 SLLVRHIKDTDFGNYMCQ-ASNNLGSSQQFIQL 81
SLL+++I D G Y ++L + + Q
Sbjct: 73 SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQF 105
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation,
crystallography, phosphorylation, sigma factor,
sporulation; HET: SEP; 1.16A {Bacillus sphaericus}
SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Length = 117
Score = 24.6 bits (54), Expect = 7.0
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 24 KVEWFRDGTAI-TLGGRIDMHVSSE 47
++E T + L G +D H +
Sbjct: 4 QLEMVTRETVVIRLFGELDHHAVEQ 28
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 24.9 bits (54), Expect = 7.0
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 38 GRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80
GR+ + SL + ++ D +Y C+ + Q I+
Sbjct: 66 GRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIR 109
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 25.2 bits (55), Expect = 7.3
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 17 VYANPPAKVEWFRDGTAITLGGRIDMHV 44
A V DG + LG R + V
Sbjct: 128 ACAWDALPVRAVADGEWLELGPRHRLQV 155
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine;
2.2A {Bacillus anthracis}
Length = 312
Score = 24.9 bits (55), Expect = 8.2
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 61 FGN-YMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPD 100
+ Y+ A + S++ I G I V +SR P
Sbjct: 36 PADCYLEPAMSA---SRKIIDRFGKNTIEVAASNSRGKNPF 73
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 24.6 bits (53), Expect = 9.1
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 25/87 (28%)
Query: 10 RAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKH------ 49
+ +++C V + W + + D ++S K
Sbjct: 26 KVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD 85
Query: 50 -----SLLVRHIKDTDFGNYMCQASNN 71
L + + G Y C +N
Sbjct: 86 TNNKYVLTLNKFSKENEGYYFCSVISN 112
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 24.4 bits (52), Expect = 9.3
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 17/75 (22%)
Query: 25 VEWFRDGTAI-TLGGRIDMHVSSEKH---------------SLLVRHIKDTD-FGNYMCQ 67
V+W G I T G ++ SL + GNY C+
Sbjct: 38 VKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCE 97
Query: 68 ASNNLGSSQQFIQLS 82
+ + I+L
Sbjct: 98 VTELTREGETIIELK 112
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold,
structure 2 function project, S2F, unknown function;
1.45A {Escherichia coli} SCOP: b.40.10.1
Length = 109
Score = 24.5 bits (53), Expect = 9.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 23 AKVEWFRDGTAITLGGRIDMHVSSEKH 49
+ RD T +TL G I +S + +
Sbjct: 29 ESAKSLRDDTWVTLRGNIVERISDDLY 55
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.7 bits (53), Expect = 9.6
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 84 IPNIPVFQKSSRRLGPDGYRLV--------WQVDTYSAIIQYLLKFRERE 125
+P + + + + + W + +Q+ K E+E
Sbjct: 178 LPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQE 227
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 24.2 bits (53), Expect = 9.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 14 ICNVYA-NPPA-KVEWFRDGTAIT 35
IC V +PP +E ++G I
Sbjct: 24 ICYVSGFHPPDISIELLKNGEVIA 47
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 24.3 bits (53), Expect = 9.8
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 14 ICNVYANPPA--KVEWFRDGTAIT 35
C V P +++ ++G I
Sbjct: 44 NCYVTQFHPPHIEIQMLKNGKKIP 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.418
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,945,277
Number of extensions: 102595
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 394
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)